ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI3668 check: MH S KOG0310 Function unknown Conserved WD40 repeat-containing protein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI3668 1276532 1278091 520
(520 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YMR093w [S] KOG0310 Conserved WD40 repeat-containing protein 776 0.0
SPBC428.19c [S] KOG0310 Conserved WD40 repeat-containing protein 266 4e-71
7290304 [S] KOG0310 Conserved WD40 repeat-containing protein 220 5e-57
At2g47990 [S] KOG0310 Conserved WD40 repeat-containing protein 195 1e-49
CE25232 [S] KOG0310 Conserved WD40 repeat-containing protein 112 2e-24
Hs14149857 [S] KOG0310 Conserved WD40 repeat-containing protein 102 1e-21
ECU11g1170 [S] KOG0310 Conserved WD40 repeat-containing protein 75 2e-13
Hs4758560 [A] KOG0265 U5 snRNP-specific protein-like factor and ... 70 8e-12
Hs13629793 [A] KOG0265 U5 snRNP-specific protein-like factor and... 70 1e-11
7290305 [S] KOG0310 Conserved WD40 repeat-containing protein 68 3e-11
Hs21071067 [K] KOG0263 Transcription initiation factor TFIID sub... 67 5e-11
CE00901 [R] KOG0266 WD40 repeat-containing protein 64 4e-10
At1g79990 [U] KOG0276 Vesicle coat complex COPI beta' subunit 60 6e-09
Hs4758032 [U] KOG0276 Vesicle coat complex COPI beta' subunit 60 8e-09
At3g15980 [U] KOG0276 Vesicle coat complex COPI beta' subunit 60 1e-08
Hs9506645 [R] KOG0266 WD40 repeat-containing protein 59 2e-08
At1g52360 [U] KOG0276 Vesicle coat complex COPI beta' subunit 59 2e-08
At2g21390 [U] KOG0292 Vesicle coat complex COPI alpha subunit 59 2e-08
CE11860 [B] KOG0264 Nucleosome remodeling factor subunit CAF1/NU... 58 3e-08
At2g43770 [A] KOG0265 U5 snRNP-specific protein-like factor and ... 58 3e-08
CE27713 [A] KOG0265 U5 snRNP-specific protein-like factor and re... 58 4e-08
Hs16554627 [R] KOG0266 WD40 repeat-containing protein 57 5e-08
7290331 [R] KOG0266 WD40 repeat-containing protein 57 5e-08
At1g62020 [U] KOG0292 Vesicle coat complex COPI alpha subunit 56 1e-07
YGL137w [U] KOG0276 Vesicle coat complex COPI beta' subunit 55 2e-07
CE18578 [A] KOG0265 U5 snRNP-specific protein-like factor and re... 55 2e-07
SPBPJ4664.04 [U] KOG0292 Vesicle coat complex COPI alpha subunit 55 3e-07
CE27762 [R] KOG0274 Cdc4 and related F-box and WD-40 proteins 55 3e-07
CE25007 [R] KOG0274 Cdc4 and related F-box and WD-40 proteins 55 3e-07
CE18673 [U] KOG0276 Vesicle coat complex COPI beta' subunit 55 3e-07
At4g02730 [R] KOG0266 WD40 repeat-containing protein 55 3e-07
At3g49660 [R] KOG0266 WD40 repeat-containing protein 55 3e-07
At2g32700 [R] KOG0266 WD40 repeat-containing protein 55 3e-07
SPAC630.14c [R] KOG0266 WD40 repeat-containing protein 54 4e-07
At2g41500 [A] KOG0272 U4/U6 small nuclear ribonucleoprotein Prp4... 54 4e-07
SPBC15D4.14 [K] KOG0263 Transcription initiation factor TFIID su... 54 6e-07
SPAC18B11.10 [R] KOG0266 WD40 repeat-containing protein 54 7e-07
7296245 [A] KOG0265 U5 snRNP-specific protein-like factor and re... 53 1e-06
7292122 [U] KOG0292 Vesicle coat complex COPI alpha subunit 52 2e-06
CE29136 [U] KOG0292 Vesicle coat complex COPI alpha subunit 52 3e-06
7291072 [R] KOG0315 G-protein beta subunit-like protein (contain... 52 3e-06
YCR084c [R] KOG0266 WD40 repeat-containing protein 51 4e-06
SPCC5E4.03c [K] KOG0263 Transcription initiation factor TFIID su... 51 4e-06
CE20251_2 [U] KOG0276 Vesicle coat complex COPI beta' subunit 51 4e-06
CE02043 [R] KOG0289 mRNA splicing factor 51 5e-06
SPAC227.12 [A] KOG0272 U4/U6 small nuclear ribonucleoprotein Prp... 50 6e-06
SPAC12G12.14c [A] KOG0284 Polyadenylation factor I complex subun... 50 6e-06
Hs5174447 [T] KOG0279 G protein beta subunit-like protein 50 6e-06
Hs5031817 [D] KOG0267 Microtubule severing protein katanin p80 s... 50 6e-06
SPBC713.05 [S] KOG0316 Conserved WD40 repeat-containing protein 50 8e-06
CE06574 [R] KOG0266 WD40 repeat-containing protein 50 8e-06
>YMR093w [S] KOG0310 Conserved WD40 repeat-containing protein
Length = 513
Score = 776 bits (2004), Expect = 0.0
Identities = 380/520 (73%), Positives = 441/520 (84%), Gaps = 7/520 (1%)
Query: 1 MSSVRPRVTPVKAPVLPKQTTPEQRYWRSYSSTQLVKEHNAVTHIAFNPQHPHDFAVTSS 60
MS+ RPR+ KAP+LP+QTTPEQRYWR Y+S QLVKEHN+VTHI+FNPQHPHDFAVTSS
Sbjct: 1 MSTARPRIITSKAPLLPQQTTPEQRYWRQYTSAQLVKEHNSVTHISFNPQHPHDFAVTSS 60
Query: 61 TRVQVFSSRTRQVIKTFSRFKDVVHSATFRQDGKLLVAGDATGLVSVYDSYNPRTLLLSI 120
TRVQ+FSSRTRQVIKTFSRFKDVV+SA+FR DGKLL AGDATGLVSVYDSYNPRT+LLSI
Sbjct: 61 TRVQIFSSRTRQVIKTFSRFKDVVYSASFRSDGKLLCAGDATGLVSVYDSYNPRTILLSI 120
Query: 121 QASSHPTHVTKFHDQDNKTLVTANDDRVVRLWDVSHAYEPTLQLTGASDYVRSVCFVPNA 180
AS+HPTHVTKFH QDNK L TA+DDRV RLWD+S+AYEP L+LTGA+DYVR++ F+P A
Sbjct: 121 NASTHPTHVTKFHTQDNKILATASDDRVTRLWDISNAYEPQLELTGATDYVRTLSFIPAA 180
Query: 181 PHMVATGSYDGVVRLYDIRTKSDKPQTTLDHGLPVEDITAISPTQLASCGGNGFKVWDLT 240
PH+VATGSYDG++RLYD R+ P +L+H PVE++ A+SPTQ+ SCGGN FKVWDLT
Sbjct: 181 PHLVATGSYDGLIRLYDTRSSGSTPIYSLNHDQPVENVIAVSPTQIVSCGGNNFKVWDLT 240
Query: 241 SDRALCERQNFAKTVTCLNYTNMGEESPMSSVLVASSLDGHVKIFSPLENFQFKFGWKFS 300
S++ L ER NF K VTCL+Y +SPM S L+ASSLDGHVK+F PL+NFQ KFGWKFS
Sbjct: 241 SNKKLYERGNFNKAVTCLDYVE-NFDSPMQSALIASSLDGHVKVFDPLDNFQVKFGWKFS 299
Query: 301 NAVLSCAVSPGDAQGNKHFVAGLSSGILAIXXXXXXXXINLADVSDLEDLPLQQQEKSAK 360
VLSCAVSP AQGN+H VAGLSSG+LAI SD E+ P K+AK
Sbjct: 300 GPVLSCAVSPSTAQGNRHLVAGLSSGLLAIRTKKKEKR-----SSDKENAP-ASFNKNAK 353
Query: 361 SNNFQRMMRGSEYRGDQEHIIHNDKPNPQRKLRQFERHINQFKWSDALDSAFIPGMAKEL 420
SNNFQRMMRGSEY+GDQEHIIHNDK QR++R FER+INQFKWS+ALD+AF+PGMAKEL
Sbjct: 354 SNNFQRMMRGSEYQGDQEHIIHNDKVRSQRRMRAFERNINQFKWSEALDNAFVPGMAKEL 413
Query: 421 TLTVLQELRKRGKIKVALYGRDESSLEPLLNWCLKGIEDVRSAPIVADWIAVVIELYGSV 480
TLTVLQELRKRGK++VALYGRDES+LEPLLNWCLKGIEDVRSA IVADW+AVV+ELYG+
Sbjct: 414 TLTVLQELRKRGKVRVALYGRDESTLEPLLNWCLKGIEDVRSASIVADWVAVVLELYGNT 473
Query: 481 LEKSPVLEEMVITLKKRVREEIRKAKEAQKIEGMLQLLTN 520
LE SPVL+E++I LK +VR EI K+KEAQ+IEGMLQLLT+
Sbjct: 474 LESSPVLQELMIDLKTKVRHEIHKSKEAQRIEGMLQLLTS 513
>SPBC428.19c [S] KOG0310 Conserved WD40 repeat-containing protein
Length = 494
Score = 266 bits (681), Expect = 4e-71
Identities = 171/527 (32%), Positives = 292/527 (54%), Gaps = 42/527 (7%)
Query: 1 MSSVRPRVTPVKAPVLPKQTTPEQRYWRSYSSTQLVKEHNAVTHIAFNPQHPHDFAVTSS 60
MS+ R+ P + LP T E ++WRS+ + KE++A+T I F+ + P+DFAVTS
Sbjct: 1 MSAPAGRLQPQRFAALPNPVTAENKFWRSFKVPVVAKEYSAITSIHFSAESPYDFAVTSG 60
Query: 61 TRVQVFSSRTRQVIKTFSRFKDVVHSATFRQDGKLLVAGDATGLVSVYDSYNPRTLLLSI 120
RVQ++ + +R V KT +RFKD +S R+DGKLL+AGDATGLV ++D + R++L ++
Sbjct: 61 ARVQIYGASSRSVKKTIARFKDTAYSGNIRKDGKLLLAGDATGLVQIFD-LSTRSILRAL 119
Query: 121 QASSHPTHVTKFHDQDNKTLVTANDDRVVRLWDVSHAYEPTLQLTGASDYVRSVCFVPNA 180
A P HVT+F N T ++ +DD+ V++WD+S L+G DYVR+ ++ +A
Sbjct: 120 DAHQFPVHVTQFCPYANTTFLSGSDDKTVKVWDLSTG-AVQYDLSGHEDYVRTASWM-SA 177
Query: 181 PHMVATGSYDGVVRLYDIRTKSDKPQTTLDHGLPVEDITAI-SPTQLASCGGNGFKVWDL 239
+V +G YDG +RL+D R +D + HG ++ + + S + + S GG KVWDL
Sbjct: 178 TRLV-SGGYDGTIRLWDTRI-ADPEVMSFSHGEAIDVVLPMQSGSTVISAGGPSIKVWDL 235
Query: 240 TSDRALCERQ--NFAKTVTCLNYTNMGEESPMSSVLVASSLDGHVKIFSPLENFQFKFGW 297
+ R ++ N K++TCL M E ++ L++ LDGHVKI++ + +++ G
Sbjct: 236 VAGRQTPTKKLSNHQKSITCL---AMNSE---NTRLLSGGLDGHVKIYN-ISDWKVVHGM 288
Query: 298 KFSNAVLSCAVSPGDAQGNKHFVAGLSSGILA-----IXXXXXXXXINLADVSDLEDLPL 352
K+S +LS +SP + V G+S+G L+ I L V +
Sbjct: 289 KYSGPILSMGLSPDSC----NLVVGMSNGTLSQRTRRITKQTSSKTPFLGGVGSAFGVVG 344
Query: 353 QQQEKSAKSNNFQRMMRGSEYRGDQEHIIHNDKPNPQRKLRQFERHINQFKWSDALDSAF 412
++++ Y+G+ + + +++LR F++ + F +SDALD
Sbjct: 345 KKKQ---------------IYKGENDEFYVEEA--RRKRLRPFDKALKSFCYSDALDMVL 387
Query: 413 IPGMAKELTLTVLQELRKRGKIKVALYGRDESSLEPLLNWCLKGIEDVRSAPIVADWIAV 472
G + L +T+L EL G +++AL RD+ SL PL+N+ K I D R + + +
Sbjct: 388 ENG-SPVLIITMLIELLHVGGLRIALSNRDDLSLTPLINFLRKYIRDPRFSETLCIVTST 446
Query: 473 VIELYGSVLEKSPVLEEMVITLKKRVREEIRKAKEAQKIEGMLQLLT 519
++++YG+ L S ++E + L+++V +E+ + A ++ GMLQ+L+
Sbjct: 447 ILDIYGAALGGSVMVENAISKLREKVEQEVAVTQRANELVGMLQMLS 493
>7290304 [S] KOG0310 Conserved WD40 repeat-containing protein
Length = 535
Score = 220 bits (560), Expect = 5e-57
Identities = 158/508 (31%), Positives = 256/508 (50%), Gaps = 41/508 (8%)
Query: 21 TPEQRYWRSYSSTQLVKEHNAVTHIAFNPQHPHDFAVTSSTRVQVFSSRTRQVIKTFSRF 80
TP+ YW + +L+KEHN + ++ F+P P +F VT S RVQ+++ T V+K SRF
Sbjct: 21 TPDTVYWDRLAKPELLKEHNTIDYLDFSPSDPDNFVVTCSVRVQIYNLVTMLVVKNLSRF 80
Query: 81 KDVVHSATFRQDGKLLVAGDATGLVSVYDSYNPRTLLLSIQASSHPTHVTKFHDQDNKTL 140
+ + ATFRQDG+LL AGD G V ++D+ R +L + + P H T F D L
Sbjct: 81 QKTAYGATFRQDGRLLAAGDEEGHVKLFDT-TSRNILRLFKGHTAPVHRT-FFTADKLQL 138
Query: 141 VTANDDRVVRLWDVSHAYEPTLQLTGASDYVRSVCFVPNAPHMVATGSYDGVVRLYDIRT 200
+ DD+ VRLWDV++ +DYVR+ P A HM +G YDG ++LYD R
Sbjct: 139 ASFGDDKSVRLWDVANEKVVQTYEDTHTDYVRAGAMHPQAGHMFVSGGYDGKIKLYDTRA 198
Query: 201 KSDKPQTTLDHGLPVEDITAI-SPTQLASCGGNGFKVWDLTSD-RALCERQNFAKTVTCL 258
++ Q TLDHG PVE + + + + S GG+ +VWDL S R L KTVTCL
Sbjct: 199 ET-AVQRTLDHGAPVESMLFLPNGSIFVSAGGSQVRVWDLISGCRLLTMMSQHHKTVTCL 257
Query: 259 NYTNMGEESPMSSVLVASSLDGHVKIFSPLENFQFKFGWKFSNAVLSCAVSPGDAQGNKH 318
+ G L++ LD HVKI+ + ++ + NAV+S AV+ GD +
Sbjct: 258 RLGSDGRR------LLSGGLDRHVKIYD-VSTYKTVHTLTYPNAVVSMAVADGD----QA 306
Query: 319 FVAGLSSGILAIXXXXXXXXINLADVSDLEDLPLQQQEK----SAKSNNFQRMMRGSEYR 374
VAG+ G+++I + S L+ + + K + ++NN Q +
Sbjct: 307 VVAGMVDGLVSIRRMMVD-----SKPSHLKKIRADRARKYFVSTKRTNNTQEV------- 354
Query: 375 GDQEHIIHNDKPNPQRKLRQFERHINQFKWSDALDSAFIPGMAK---ELTLTVLQELRKR 431
+H I + P L+ ++ H+ QF ALD + EL + V+ +L R
Sbjct: 355 ---DHTIKDHVKGP--GLKSYDVHLRQFNHKKALDDVMNAQKMQYQPELIVAVITDLLHR 409
Query: 432 GKIKVALYGRDESSLEPLLNWCLKGIEDVRSAPIVADWIAVVIELYGS-VLEKSPVLEEM 490
G + AL GR E++L +++ + +VR + + V++++ ++ S L +
Sbjct: 410 GSLGKALTGRHEAALVRFIDFICNHLGEVRFMRPLMMAASTVLDVFEQRLVAYSQKLMKA 469
Query: 491 VITLKKRVREEIRKAKEAQKIEGMLQLL 518
+ L ++EE+R E +++G + +L
Sbjct: 470 LQRLSLAMQEEVRLTAELMRMKGAVDML 497
>At2g47990 [S] KOG0310 Conserved WD40 repeat-containing protein
Length = 530
Score = 195 bits (496), Expect = 1e-49
Identities = 150/519 (28%), Positives = 250/519 (47%), Gaps = 34/519 (6%)
Query: 14 PVLPKQT--------TPEQRYWRSYSSTQLVKEHNAVTHIAFNPQHPHDFAVTSSTRVQV 65
PV PK T TPE RYW S+ + ++V +AF+P HPH AV S V +
Sbjct: 19 PVKPKSTAKPVSESETPESRYWSSFKNHSTPNLVSSVAALAFSPVHPHSLAVAHSATVSL 78
Query: 66 FSSRTRQVIKTFSRFKDVVHSATFRQDGKLLVAGDATGLVSVYDSYNPRTLLLSIQASSH 125
FSS++ + FS F+DVV S FR DG L A D +G+V V+D R L ++++ S
Sbjct: 79 FSSQSLSSSRRFS-FRDVVSSVCFRSDGALFAACDLSGVVQVFD-IKERMALRTLRSHSA 136
Query: 126 PTHVTKFHDQDNKTLVTANDDRVVRLWDVSHAYEPTLQLTGASDYVRSVCFVPNAPHMVA 185
P K+ QD LV+ DD VV+ WDV+ A L G DYVR P M+
Sbjct: 137 PARFVKYPVQDKLHLVSGGDDGVVKYWDVAGA-TVISDLLGHKDYVRCGDCSPVNDSMLV 195
Query: 186 TGSYDGVVRLYDIRTKSDKPQTTLDHGLPVEDITAI-SPTQLASCGGNGFKVWDLT-SDR 243
TGSYD V+++D R + ++HGLPVED+ + S +A+ GGN KVWDL +
Sbjct: 196 TGSYDHTVKVWDARVHTSNWIAEINHGLPVEDVVYLPSGGLIATAGGNSVKVWDLIGGGK 255
Query: 244 ALCERQNFAKTVTCLNYTNMGEESPMSSVLVASSLDGHVKIFSPLENFQFKFGWKFSNAV 303
+C ++ KTVT L M S LV+ +LDG++K+F + + +F +
Sbjct: 256 MVCSMESHNKTVTSLRVARM---ESAESRLVSVALDGYMKVFD-YGRAKVTYSMRFPAPL 311
Query: 304 LSCAVSPGDAQGNKHFVAGLSSGILA------IXXXXXXXXINL-ADVSDLEDLPLQQQE 356
+S +SP G+ + G + + A +NL + +SD++ + +
Sbjct: 312 MSLGLSP---DGSTRVIGGSNGMVFAGKKKVRDVVGGQKKSLNLWSLISDVD----ESRR 364
Query: 357 KSAKSNNFQRMMRGSEYRGDQEHIIHNDKPNPQRKLRQFERHINQFKWSDALDSAFIPGM 416
++ + F+ RG + ++ + +K KL + ++ + +F+ +AL S +
Sbjct: 365 RALRPTYFRYFQRGQSEKPSKDDYLVKEKKG--LKLTRHDKLLKKFRHKEALVSV-LEEK 421
Query: 417 AKELTLTVLQELRKRGKIKVALYGRDESSLEPLLNWCLKGIEDVRSAPIVADWIAVVIEL 476
+ V++EL R K+ + +E L LL + + R + ++ V+E
Sbjct: 422 KPANVVAVMEELVARRKLMKCVSNMEEGELGMLLGFLQRYCTVQRYSGLLMGLTKKVLET 481
Query: 477 YGSVLEKSPVLEEMVITLKKRVREEIRKAKEAQKIEGML 515
++ + ++ LK+ V +EIR + +I+G++
Sbjct: 482 RAEDIKGKNEFKGLLRNLKREVNQEIRIQQSLLEIQGVI 520
>CE25232 [S] KOG0310 Conserved WD40 repeat-containing protein
Length = 547
Score = 112 bits (279), Expect = 2e-24
Identities = 118/504 (23%), Positives = 208/504 (40%), Gaps = 41/504 (8%)
Query: 22 PEQRYWRSYSSTQLVKEHN--AVTHIAFNPQHPHDFAVTSSTRVQVFSSRTRQVIKTFSR 79
P +++ T L+ E V+ + +P+ P+ A TSS R+ ++ + + + FSR
Sbjct: 7 PAEKFLSRKQETILLDEDEPAVVSSVRISPKKPYHVATTSSVRLTLYDTVVCEPLNLFSR 66
Query: 80 FKDVVHSATFRQDGKLLVAGDATGLVSVYD----SYNPRTLLLSIQASSHPTHVTKFHDQ 135
FK V S FR DG+LL G G V ++D + + + L +QAS F +
Sbjct: 67 FKKGVCSIDFRHDGRLLAIGGDEGKVRIFDVEKTTGSSKVALRVMQASQSTVKSVHFSPR 126
Query: 136 DNKTLVTANDDRVVRLWDVSHAY----EPTLQLTGASDYVRSVCFVPNAPHMVATGSYDG 191
+ A+D ++ + AY P +++ D +R H+V TG YD
Sbjct: 127 GDTVFSMADDGKIKQYRVADTAYGVNAVPIIEIQAHEDAIRCGAVSSINDHIVLTGGYDH 186
Query: 192 VVRLYDIRTKSDKPQTTLDHGLPVEDITAISPTQL-ASCGGNGFKVWDLTSDRALCERQN 250
VRL+DIR+K + +H PVE + + QL A+ G K+WD T+ R L Q
Sbjct: 187 KVRLWDIRSKEKSLELDCEH--PVESVLFLPGEQLIATAAGPIVKIWDTTTGRQLTALQA 244
Query: 251 FAKTVTCLNYTNMGEESPMSSVLVASSLDGHVKIFSPLENFQFKFGWKFSNAVLSCAVSP 310
KTVT L + S+ L+++ +D V F N+ W + VL VS
Sbjct: 245 HYKTVTSLRL------ATNSTCLLSAGIDRRVNAFR-TTNYSLINSWSMPSPVLDIDVSR 297
Query: 311 GDAQGNKHFVAGLSSGILAIXXXXXXXXINLADVSDLEDLPLQQQEKSAKSNNFQRMMRG 370
D +AI A++ ++K + ++
Sbjct: 298 DDQ-------------TMAIGMGNLLALYRRAEIKKEATASAAIEDKRSLIRTSAPPVKL 344
Query: 371 SEYRGDQEHIIHNDKPNPQRKLRQFERHINQFKWSDALDSAFIPGMAKELTLTVLQELR- 429
E D + + K + K+ + + ++ FK + + F + V+ LR
Sbjct: 345 VEKDRDMQKVDVVAKNADKLKIPKIDGMLSNFKHAAVIKLLFGGKFRSAMDTAVVSYLRV 404
Query: 430 --KRGKIKVALYGRDESSLEPLLNWCLKGIEDVRSAPIVADWIAVVIELYGSVLEKSPVL 487
RG I AL G++ S + +L + + + + + + ++Y LEK L
Sbjct: 405 IVMRGAIHRALAGQERSVQKNILVFLNHNLYKAQYFSTLKEVVNAFFDVY--ALEK---L 459
Query: 488 EEMVITLKKRVREEIRKAKEAQKI 511
++ V+ + +R + + E QK+
Sbjct: 460 DKDVVKHVQSLRGSLGRELEVQKM 483
>Hs14149857 [S] KOG0310 Conserved WD40 repeat-containing protein
Length = 285
Score = 102 bits (255), Expect = 1e-21
Identities = 74/284 (26%), Positives = 148/284 (52%), Gaps = 32/284 (11%)
Query: 239 LTSDRALCERQNFAKTVTCLNYTNMGEESPMSSVLVASSLDGHVKIFSPLENFQFKFGWK 298
L + L +N KTVTCL ++ G+ L++ SLD VK++S +++ +
Sbjct: 2 LKGGQLLVSLKNHHKTVTCLCLSSSGQR------LLSGSLDRKVKVYSTT-SYKVVHSFD 54
Query: 299 FSNAVLSCAVSPGDAQGNKHFVAGLSSGILAIXXXXXXXXINLADVSDLEDLPLQQQEKS 358
++ ++LS A++ D + V G+++GIL++ + E LP +++
Sbjct: 55 YAASILSLALAHED----ETIVVGMTNGILSVKHRKSE--------AKKESLPRRRRPA- 101
Query: 359 AKSNNFQRMMRGSEYRGDQEHIIHNDKPNPQRK-LRQFERHINQFKWSDALDSAFIPGMA 417
++ ++G Y ++ I+ N P +K L ++R + F+ S ALD P
Sbjct: 102 -----YRTFIKGKNYMKQRDDILIN---RPAKKHLELYDRDLKHFRISKALDRVLGPTCT 153
Query: 418 ---KELTLTVLQELRKRGKIKVALYGRDESSLEPLLNWCLKGIEDVRSAPIVADWIAVVI 474
E+T+++++EL +RG + AL GRDE + +LN+ ++ + R AP++ + ++I
Sbjct: 154 IKTPEITVSIIKELNRRGVLANALAGRDEKEISHVLNFLIRNLSQPRFAPVLINAAEIII 213
Query: 475 ELYGSVLEKSPVLEEMVITLKKRVREEIRKAKEAQKIEGMLQLL 518
++Y V+ +SPV+++ + L+ V +EI +E + GM+ +L
Sbjct: 214 DIYLPVIGQSPVVDKKFLLLQGLVEKEIDYQRELLETLGMMDML 257
>ECU11g1170 [S] KOG0310 Conserved WD40 repeat-containing protein
Length = 446
Score = 75.1 bits (183), Expect = 2e-13
Identities = 92/410 (22%), Positives = 172/410 (41%), Gaps = 55/410 (13%)
Query: 93 GKLLVAGDATGLVSVYDSYNPRTLLLSIQASSHPTHVTKFHDQDNKTLVTANDDRVVRLW 152
G+L GD +G + V + Q H + + D LV+ +DD ++++
Sbjct: 74 GELAACGDESGHIKVIGKMKS----IVRQYYEHEARINEIRI-DGTMLVSCSDDMKIKIF 128
Query: 153 DVSHAYEPTLQLTGASDYVRSVCFVPNAPHMVATGSYDGVVRLYDIRTKSDKPQTTLDHG 212
D+S A E ++ ++DYVRS+ V +V +GSYDG VR + ++T S + + G
Sbjct: 129 DLSKA-ESVATISDSTDYVRSIDIVDG---IVFSGSYDGFVRGHCLKTLSRVVE--YNAG 182
Query: 213 LPVEDITAISPTQLASCGGNGFKVWDLTSDRALCERQNFAKTVTCLNYTNMGEESPMSSV 272
+ I A+ +++A GN +V D++ + + + + + Y +
Sbjct: 183 CRISRICALGSSRIALASGNEVRVIDVSGGIEIGRFFHIKEVTSMVFYGHR--------- 233
Query: 273 LVASSLDGHVKIFSPLENFQFKFGWKFSNAVLSCAVSPGDAQGNKHFVAGLSSGILAIXX 332
L +SLD +V++F+ K + V G+ GIL I
Sbjct: 234 LYTASLDANVRVFTT--------DLKMISRV------------------GVRGGILDISI 267
Query: 333 XXXXXXINLADVSDLEDLPLQQQEKSAKSNNFQRMMRGSEYRGDQEHIIHNDKPNPQRKL 392
+ L D LE + +EK KS M+ + G + + + NP +L
Sbjct: 268 FDDVVYLGLEDGGVLELV----KEKPKKS----PMVPKDKGDGLHDEVRVDIVRNPVERL 319
Query: 393 RQFERHINQFKWSDALDSAFIPGMAKELTLTVLQELRKRGKIKVALYGRDESSLEPLLNW 452
E+ +N+F++ ++ A +E+ + KRG ++ AL L +L+
Sbjct: 320 TYLEKRLNRFEYKKSMMHAMEKRDVQEMFAAMSYIHEKRGFVR-ALQDLSRKELAGVLDV 378
Query: 453 CLKGIEDVRSAPIVADWIAVVIELYGSVLEKSPVLEEMVITLKKRVREEI 502
++ PI ++ I V++ LY +E P+L + L V +E+
Sbjct: 379 IVEFFTVKEFVPIFSECIGVILSLYERDIEDDPMLAGRIEALASVVDDEV 428
>Hs4758560 [A] KOG0265 U5 snRNP-specific protein-like factor and related
proteins
Length = 357
Score = 70.1 bits (170), Expect = 8e-12
Identities = 67/249 (26%), Positives = 112/249 (44%), Gaps = 24/249 (9%)
Query: 74 IKTFSRFKDVVHSATFRQDGKLLVAGDATGLVSVYDSYNPRTLLLSIQASSHPTHVTKFH 133
I S + V+ F +G L + L+ +++ Y +++ H V + H
Sbjct: 59 IMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKG--HSGAVMELH 116
Query: 134 -DQDNKTLVTANDDRVVRLWDVSHAYEPTLQLTGASDYVRSVCFVPNAPHMVATGSYDGV 192
+ D L +A+ D+ V +WD S E +L G + +V S +P +V TGS DG
Sbjct: 117 YNTDGSMLFSASTDKTVAVWD-SETGERVKRLKGHTSFVNSCYPARKSPQLVCTGSDDGT 175
Query: 193 VRLYDIRTKSDKPQTTLDHGLPVEDITAISPTQLASCGG--NGFKVWDLTSDRALCERQN 250
V+L+DIR K+ T + V +T + GG N KVWDL ++ +
Sbjct: 176 VKLWDIRKKA--AIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRG 233
Query: 251 FAKTVTCLNYTNMGEESPMSSVLVASSLDGHVKI-----FSPLEN----FQFKFGWKFSN 301
A +VT L+ ++ G S L+++++D V++ F+P E FQ F
Sbjct: 234 HADSVTGLSLSSEG------SYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNV-HNFEK 286
Query: 302 AVLSCAVSP 310
+L C+ SP
Sbjct: 287 NLLRCSWSP 295
>Hs13629793 [A] KOG0265 U5 snRNP-specific protein-like factor and related
proteins
Length = 357
Score = 69.7 bits (169), Expect = 1e-11
Identities = 67/249 (26%), Positives = 111/249 (43%), Gaps = 24/249 (9%)
Query: 74 IKTFSRFKDVVHSATFRQDGKLLVAGDATGLVSVYDSYNPRTLLLSIQASSHPTHVTKFH 133
I S + V+ F +G L + L+ +++ Y +++ H V + H
Sbjct: 59 IMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKG--HSGAVMELH 116
Query: 134 -DQDNKTLVTANDDRVVRLWDVSHAYEPTLQLTGASDYVRSVCFVPNAPHMVATGSYDGV 192
+ D L +A+ D+ V +WD S E +L G + +V S P +V TGS DG
Sbjct: 117 YNTDGSMLFSASTDKTVAVWD-SETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGT 175
Query: 193 VRLYDIRTKSDKPQTTLDHGLPVEDITAISPTQLASCGG--NGFKVWDLTSDRALCERQN 250
V+L+DIR K+ T + V +T + GG N KVWDL ++ +
Sbjct: 176 VKLWDIRKKA--AIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRG 233
Query: 251 FAKTVTCLNYTNMGEESPMSSVLVASSLDGHVKI-----FSPLEN----FQFKFGWKFSN 301
A +VT L+ ++ G S L+++++D V++ F+P E FQ F
Sbjct: 234 HADSVTGLSLSSEG------SYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNV-HNFEK 286
Query: 302 AVLSCAVSP 310
+L C+ SP
Sbjct: 287 NLLRCSWSP 295
>7290305 [S] KOG0310 Conserved WD40 repeat-containing protein
Length = 381
Score = 68.2 bits (165), Expect = 3e-11
Identities = 47/175 (26%), Positives = 76/175 (42%), Gaps = 31/175 (17%)
Query: 21 TPEQRYWRSYSSTQLVKEHNAVTHIAFNPQHPHDFAVTSSTRVQVFSSRTRQVIKTFSRF 80
TP+ YW + +L+KEHN + ++ F+P P +F VT S RVQ+++ T V+K SRF
Sbjct: 21 TPDTVYWDRLAKPELLKEHNTIDYLDFSPSDPDNFVVTCSVRVQIYNLVTMLVVKNLSRF 80
Query: 81 KDVVHSATFRQDGKLLVAGDATGLVSVYDSYNPRTLLLSIQASSHPTHVTKFHDQDNKTL 140
+ + LL++ + H T D + L
Sbjct: 81 QKTAYGCR----------------------------LLTMMSQHHKTVTCLRLGSDGRRL 112
Query: 141 VTANDDRVVRLWDVSHAYEPTLQLTGASDYVRSVCFVPNAPHMVATGSYDGVVRL 195
++ DR V+++DVS Y+ LT + V V + V G DG+V +
Sbjct: 113 LSGGLDRHVKIYDVS-TYKTVHTLTYPNAVVSMA--VADGDQAVVAGMVDGLVSI 164
Score = 66.2 bits (160), Expect = 1e-10
Identities = 69/284 (24%), Positives = 128/284 (44%), Gaps = 36/284 (12%)
Query: 243 RALCERQNFAKTVTCLNYTNMGEESPMSSVLVASSLDGHVKIFSPLENFQFKFGWKFSNA 302
R L KTVTCL + G L++ LD HVKI+ + ++ + NA
Sbjct: 88 RLLTMMSQHHKTVTCLRLGSDGRR------LLSGGLDRHVKIYD-VSTYKTVHTLTYPNA 140
Query: 303 VLSCAVSPGDAQGNKHFVAGLSSGILAIXXXXXXXXINLADVSDLEDLPLQQQEK----S 358
V+S AV+ GD + VAG+ G+++I + S L+ + + K +
Sbjct: 141 VVSMAVADGD----QAVVAGMVDGLVSIRRMMVD-----SKPSHLKKIRADRARKYFVST 191
Query: 359 AKSNNFQRMMRGSEYRGDQEHIIHNDKPNPQRKLRQFERHINQFKWSDALDSAFIPGMAK 418
++NN Q + +H I + P L+ ++ H+ QF ALD +
Sbjct: 192 KRTNNTQEV----------DHTIKDHVKGPG--LKSYDVHLRQFNHKKALDDVMNAQKMQ 239
Query: 419 ---ELTLTVLQELRKRGKIKVALYGRDESSLEPLLNWCLKGIEDVRSAPIVADWIAVVIE 475
EL + V+ +L RG + AL GR E++L +++ + +VR + + V++
Sbjct: 240 YQPELIVAVITDLLHRGSLGKALTGRHEAALVRFIDFICNHLGEVRFMRPLMMAASTVLD 299
Query: 476 LYGS-VLEKSPVLEEMVITLKKRVREEIRKAKEAQKIEGMLQLL 518
++ ++ S L + + L ++EE+R E +++G + +L
Sbjct: 300 VFEQRLVAYSQKLMKALQRLSLAMQEEVRLTAELMRMKGAVDML 343
>Hs21071067 [K] KOG0263 Transcription initiation factor TFIID subunit TAF5
(also component of histone acetyltransferase SAGA)
Length = 800
Score = 67.4 bits (163), Expect = 5e-11
Identities = 58/231 (25%), Positives = 100/231 (43%), Gaps = 13/231 (5%)
Query: 64 QVFSSRTRQVIKTFSRFKDVVHSATFRQDGKLLVAGDATGLVSVYDSYNPRTLLLSIQAS 123
++ +T +K V+ A+F D L++ G V ++ S T L+ +
Sbjct: 526 RIMDEKTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLW-SLQTFTCLVGYKGH 584
Query: 124 SHPTHVTKFHDQDNKTLVTANDDRVVRLWDVSHAYEPTLQLTGASDYVRSVCFVPNAPHM 183
++P T+F V+ DRV RLW H Y+P G V F PN+ +
Sbjct: 585 NYPVWDTQFSPY-GYYFVSGGHDRVARLWATDH-YQPLRIFAGHLADVNCTRFHPNSNY- 641
Query: 184 VATGSYDGVVRLYDIRTKSDKPQTTLDHGLPVEDITAISPTQLASCGGNGFKV--WDLTS 241
VATGS D VRL+D+ + + H P+ +T + + G +V WD+
Sbjct: 642 VATGSADRTVRLWDV-LNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGH 700
Query: 242 DRALCERQNFAKTVTCLNYTNMGEESPMSSVLVASSLDGHVKIFSPLENFQ 292
+ E + TV L ++ GE +L + S+D V+++ ++ F+
Sbjct: 701 GLMVGELKGHTDTVCSLRFSRDGE------ILASGSMDNTVRLWDAIKAFE 745
>CE00901 [R] KOG0266 WD40 repeat-containing protein
Length = 376
Score = 64.3 bits (155), Expect = 4e-10
Identities = 45/172 (26%), Positives = 81/172 (46%), Gaps = 5/172 (2%)
Query: 33 TQLVKEHNAVTHIA-FNPQHPHDFAVTSSTRVQVFSSRTRQVIKTFSRFKDVVHSATFRQ 91
T+ +K HN FNPQ + + V+++ +T IKT D V + +F +
Sbjct: 164 TKTLKGHNNYVFCCNFNPQSSLVVSGSFDESVRIWDVKTGMCIKTLPAHSDPVSAVSFNR 223
Query: 92 DGKLLVAGDATGLVSVYDSYNPRTLLLSIQASSHPTHVTKFHDQDNKTLVTANDDRVVRL 151
DG L+ +G GLV ++D+ N + + + + P KF + K ++ +N D ++L
Sbjct: 224 DGSLIASGSYDGLVRIWDTANGQCIKTLVDDENPPVAFVKF-SPNGKYILASNLDSTLKL 282
Query: 152 WDVSHAYEPTLQLTG--ASDYVRSVCFVPNAPHMVATGSYDGVVRLYDIRTK 201
WD S + Q TG S Y F + +GS D + +++++T+
Sbjct: 283 WDFSKG-KTLKQYTGHENSKYCIFANFSVTGGKWIISGSEDCKIYIWNLQTR 333
>At1g79990 [U] KOG0276 Vesicle coat complex COPI beta' subunit
Length = 913
Score = 60.5 bits (145), Expect = 6e-09
Identities = 68/298 (22%), Positives = 125/298 (41%), Gaps = 27/298 (9%)
Query: 42 VTHIAFNPQHPHDFAVTSSTRVQVFSSRTRQVIKTFSRFKDVVHSATFRQDGKLLVAGDA 101
V + +P P A S + +++ +T+ ++K+F + V SA F + +VAG
Sbjct: 11 VKSVDLHPTEPWILASLYSGTLCIWNYQTQTMVKSFDVTELPVRSAKFIARKQWVVAGAD 70
Query: 102 TGLVSVYDSYNPRTLLLSIQASSHPTHVTKFHDQDNKTLVTANDDRVVRLWDVSHAYEPT 161
+ VY+ YN + +A + H L +++DD +++LWD + T
Sbjct: 71 DMFIRVYN-YNTMDKIKVFEAHADYIRCVAVHPTLPYVL-SSSDDMLIKLWDWEKGWLCT 128
Query: 162 LQLTGASDYVRSVCFVPNAPHMVATGSYDGVVRLYDIRTKSDKPQTTLDHGLP----VED 217
G S YV V F P + A+ S D ++++++ S P TLD L V+
Sbjct: 129 QIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNL--GSPDPNFTLDAHLKGVNCVDY 186
Query: 218 IT-AISPTQLASCGGNGFKVWDLTSDRALCERQNFAKTVTCLNYTNMGEESPMSSVLVAS 276
T P + + KVWD + + + V+ +++ P +++
Sbjct: 187 FTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVSF------HPELPIIITG 240
Query: 277 SLDGHVKIFSP----LENFQFKFGWKFSNAVLSCAVSPGDAQGNKHFVAGLSSGILAI 330
S DG V+I+ LEN +G + A+ G +G++ V G G + +
Sbjct: 241 SEDGTVRIWHATTYRLEN-TLNYGLERVWAI-------GHIKGSRRVVIGYDEGSIMV 290
>Hs4758032 [U] KOG0276 Vesicle coat complex COPI beta' subunit
Length = 906
Score = 60.1 bits (144), Expect = 8e-09
Identities = 56/257 (21%), Positives = 108/257 (41%), Gaps = 15/257 (5%)
Query: 34 QLVKEHNAVTHIAFNPQHPHDFAVTSSTRVQVFSSRTRQVIKTFSRFKDVVHSATFRQDG 93
+L + V + +P P A + V V++ T+ ++KTF V +A F
Sbjct: 10 KLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPVRAAKFVARK 69
Query: 94 KLLVAGDATGLVSVYDSYNPRTLLLSIQASSHPTHVTKFHDQDNKTLVTANDDRVVRLWD 153
+V G + V++ YN + +A S H ++T++DD +++LWD
Sbjct: 70 NWVVTGADDMQIRVFN-YNTLERVHMFEAHSDYIRCIAVHPTQ-PFILTSSDDMLIKLWD 127
Query: 154 VSHAYEPTLQLTGASDYVRSVCFVPNAPHMVATGSYDGVVRLYDIRTKSDKPQTTLD-HG 212
+ + G + YV + P + A+ S D ++++ + + S P TL+ H
Sbjct: 128 WDKKWSCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSS--PNFTLEGHE 185
Query: 213 LPVEDITAIS----PTQLASCGGNGFKVWDLTSDRALCERQNFAKTVTCLNYTNMGEESP 268
V I S P ++ K+WD + + + A+ V+C ++ P
Sbjct: 186 KGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASF------HP 239
Query: 269 MSSVLVASSLDGHVKIF 285
+++ S DG V+I+
Sbjct: 240 ELPIIITGSEDGTVRIW 256
>At3g15980 [U] KOG0276 Vesicle coat complex COPI beta' subunit
Length = 921
Score = 59.7 bits (143), Expect = 1e-08
Identities = 59/249 (23%), Positives = 105/249 (41%), Gaps = 15/249 (6%)
Query: 42 VTHIAFNPQHPHDFAVTSSTRVQVFSSRTRQVIKTFSRFKDVVHSATFRQDGKLLVAGDA 101
V + +P P A S V +++ +T+ + K+F + V SA F + +VAG
Sbjct: 21 VKSVDLHPTEPWILASLYSGTVCIWNYQTQTITKSFEVTELPVRSAKFIPRKQWVVAGAD 80
Query: 102 TGLVSVYDSYNPRTLLLSIQASSHPTHVTKFHDQDNKTLVTANDDRVVRLWDVSHAYEPT 161
+ VY+ YN + +A S H L +++DD +++LWD + + T
Sbjct: 81 DMYIRVYN-YNTMDKVKVFEAHSDYIRCVAVHPTLPYVL-SSSDDMLIKLWDWENGWACT 138
Query: 162 LQLTGASDYVRSVCFVPNAPHMVATGSYDGVVRLYDIRTKSDKPQTTLD-HGLPVEDITA 220
G S YV V F P + A+ S D ++++++ S P TLD H V +
Sbjct: 139 QIFEGHSHYVMQVVFNPKDTNTFASASLDRTIKIWNL--GSPDPNFTLDAHQKGVNCVDY 196
Query: 221 IS----PTQLASCGGNGFKVWDLTSDRALCERQNFAKTVTCLNYTNMGEESPMSSVLVAS 276
+ P + + KVWD + + V+ + + P +++
Sbjct: 197 FTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCF------HPELPIIITG 250
Query: 277 SLDGHVKIF 285
S DG V+I+
Sbjct: 251 SEDGTVRIW 259
>Hs9506645 [R] KOG0266 WD40 repeat-containing protein
Length = 330
Score = 58.9 bits (141), Expect = 2e-08
Identities = 48/179 (26%), Positives = 83/179 (45%), Gaps = 9/179 (5%)
Query: 28 RSYSSTQLVKEH-NAVTHIAFNPQHPHDFAVTSS--TRVQVFSSRTRQVIKTFSRFKDVV 84
RS + +K H N V FNP P + ++ S V+++ +T + +KT S D V
Sbjct: 113 RSGKCLKTLKGHSNYVFCCNFNP--PSNLIISGSFDETVKIWEVKTGKCLKTLSAHSDPV 170
Query: 85 HSATFRQDGKLLVAGDATGLVSVYDSYNPRTLLLSIQASSHPTHVTKFHDQDNKTLVTAN 144
+ F G L+V+G GL ++D+ + + L + + P KF + K ++TA
Sbjct: 171 SAVHFNCSGSLIVSGSYDGLCRIWDAASGQCLKTLVDDDNPPVSFVKF-SPNGKYILTAT 229
Query: 145 DDRVVRLWDVSHAYEPTLQLTGASD--YVRSVCFVPNAPHMVATGSYDGVVRLYDIRTK 201
D ++LWD S TG + Y F + +GS D +V +++++TK
Sbjct: 230 LDNTLKLWDYSRG-RCLKTYTGQKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 287
Score = 50.1 bits (118), Expect = 8e-06
Identities = 42/167 (25%), Positives = 83/167 (49%), Gaps = 9/167 (5%)
Query: 82 DVVHSATFRQDGKLLVAGDATGLVSVYDSYNPRTLLLSIQASSHPTHVTKFH-DQDNKTL 140
+ V S F +G+ L + A L+ ++ +Y+ + H ++ D+ L
Sbjct: 42 EAVSSVKFSPNGEWLASSSADRLIIIWGAYDGK---YEKTLYGHNLEISDVAWSSDSSRL 98
Query: 141 VTANDDRVVRLWDVSHAYEPTLQLTGASDYVRSVCFVPNAPHMVATGSYDGVVRLYDIRT 200
V+A+DD+ ++LWDV + + L G S+YV F P + +++ +GS+D V++++++T
Sbjct: 99 VSASDDKTLKLWDV-RSGKCLKTLKGHSNYVFCCNFNPPS-NLIISGSFDETVKIWEVKT 156
Query: 201 KSDKPQTTLDHGLPVEDI-TAISPTQLASCGGNGF-KVWDLTSDRAL 245
+T H PV + S + + S +G ++WD S + L
Sbjct: 157 -GKCLKTLSAHSDPVSAVHFNCSGSLIVSGSYDGLCRIWDAASGQCL 202
>At1g52360 [U] KOG0276 Vesicle coat complex COPI beta' subunit
Length = 926
Score = 58.9 bits (141), Expect = 2e-08
Identities = 59/257 (22%), Positives = 108/257 (41%), Gaps = 15/257 (5%)
Query: 34 QLVKEHNAVTHIAFNPQHPHDFAVTSSTRVQVFSSRTRQVIKTFSRFKDVVHSATFRQDG 93
+L + V + +P P A S + +++ +T+ + K+F + V SA F
Sbjct: 10 KLAQRSERVKSVDLHPTEPWILASLYSGTLCIWNYQTQVMAKSFEVTELPVRSAKFVARK 69
Query: 94 KLLVAGDATGLVSVYDSYNPRTLLLSIQASSHPTHVTKFHDQDNKTLVTANDDRVVRLWD 153
+ +VAG + VY+ YN + +A S H L +++DD +++LWD
Sbjct: 70 QWVVAGADDMYIRVYN-YNTMDKVKVFEAHSDYIRCVAVHPTLPYVL-SSSDDMLIKLWD 127
Query: 154 VSHAYEPTLQLTGASDYVRSVCFVPNAPHMVATGSYDGVVRLYDIRTKSDKPQTTLD-HG 212
+ T G S YV V F P + A+ S D ++++++ S P TLD H
Sbjct: 128 WEKGWACTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNL--GSPDPNFTLDAHQ 185
Query: 213 LPVEDITAIS----PTQLASCGGNGFKVWDLTSDRALCERQNFAKTVTCLNYTNMGEESP 268
V + + P + + KVWD + + + V+ + + P
Sbjct: 186 KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCF------HP 239
Query: 269 MSSVLVASSLDGHVKIF 285
+++ S DG V+I+
Sbjct: 240 ELPIIITGSEDGTVRIW 256
>At2g21390 [U] KOG0292 Vesicle coat complex COPI alpha subunit
Length = 1218
Score = 58.5 bits (140), Expect = 2e-08
Identities = 45/178 (25%), Positives = 79/178 (44%), Gaps = 4/178 (2%)
Query: 33 TQLVKEHNAVTHIAFNPQHPHDFAVTSSTRVQVFSSRTRQVIKTFSRFKDVVHSATFRQD 92
T+ + N V ++F+P+ P A S +Q++ R +I F + V F
Sbjct: 3 TKFETKSNRVKGLSFHPKRPWILASLHSGVIQLWDYRMGTLIDRFDEHEGPVRGVHFHNS 62
Query: 93 GKLLVAGDATGLVSVYDSYNPRTLLLSIQASSHPTHVTKFHDQDNKTLVTANDDRVVRLW 152
L V+G + V++ Y L ++ +FH +N +V+A+DD+ +R+W
Sbjct: 63 QPLFVSGGDDYKIKVWN-YKTHRCLFTLLGHLDYIRTVQFH-HENPWIVSASDDQTIRIW 120
Query: 153 DVSHAYEPTLQLTGASDYVRSVCFVPNAPHMVATGSYDGVVRLYDIRTKSDKPQTTLD 210
+ ++ LTG + YV F P +V + S D VR++DI K + D
Sbjct: 121 NWQSRTCISV-LTGHNHYVMCASFHPK-EDLVVSASLDQTVRVWDIGALKKKSASPAD 176
>CE11860 [B] KOG0264 Nucleosome remodeling factor subunit CAF1/NURF55/MSI1
Length = 412
Score = 58.2 bits (139), Expect = 3e-08
Identities = 49/160 (30%), Positives = 77/160 (47%), Gaps = 13/160 (8%)
Query: 91 QDGKLLVAGDATGLVSVYDSYNPRTLLLSIQASS----HPTHV--TKFHDQDNKTLVTAN 144
++G LL AGD G++ +D +T+ I S H ++ FH N +
Sbjct: 183 REGHLLTAGD-DGMICHWDINANQTISGQIVPQSKFKGHSSNAEDVSFHALHNFVFGSVG 241
Query: 145 DDRVVRLWDVSHAYEPTLQLTGASDYVRSVCFVPNAPHMVATGSYDGVVRLYDIRTKSDK 204
DDR + LWD+ + +P L G + V + F P + +++ATGS D V L+D+R K
Sbjct: 242 DDRKLNLWDLRQS-KPQLTAVGHTAEVNCITFNPFSEYILATGSVDKTVALWDMRNMRKK 300
Query: 205 PQTTLDHGLPVEDITAISP---TQLASCGGNG-FKVWDLT 240
T H + + + SP T LAS G + VWD++
Sbjct: 301 MYTLKHHNDEIFQV-SFSPHYETVLASSGSDDRVIVWDIS 339
>At2g43770 [A] KOG0265 U5 snRNP-specific protein-like factor and related
proteins
Length = 343
Score = 58.2 bits (139), Expect = 3e-08
Identities = 54/218 (24%), Positives = 93/218 (41%), Gaps = 20/218 (9%)
Query: 74 IKTFSRFKDVVHSATFRQDGKLLVAGDATGLVSVYDSYNPRTLLLSIQASSHPTHVTKFH 133
I S V++ F G L+ +G + ++ + + ++ H + H
Sbjct: 46 IMLLSGHPSAVYTMKFNPAGTLIASGSHDREIFLWRVHGDCKNFMVLKG--HKNAILDLH 103
Query: 134 -DQDNKTLVTANDDRVVRLWDVSHAYEPTLQLTGASDYVRSVCFVPNAPHMVATGSYDGV 192
D +V+A+ D+ VR WDV + ++ S +V S C P ++ +GS DG
Sbjct: 104 WTSDGSQIVSASPDKTVRAWDVETGKQ-IKKMAEHSSFVNSCCPTRRGPPLIISGSDDGT 162
Query: 193 VRLYDIRTKSDKPQTTLDHGLPVEDITAISPTQLAS---CGG--NGFKVWDLTSDRALCE 247
+L+D+R + QT D ITA+S + A GG N KVWDL A
Sbjct: 163 AKLWDMRQRG-AIQTFPDK----YQITAVSFSDAADKIFTGGVDNDVKVWDLRKGEATMT 217
Query: 248 RQNFAKTVTCLNYTNMGEESPMSSVLVASSLDGHVKIF 285
+ T+T ++ SP S L+ + +D + ++
Sbjct: 218 LEGHQDTITGMSL------SPDGSYLLTNGMDNKLCVW 249
>CE27713 [A] KOG0265 U5 snRNP-specific protein-like factor and related
proteins
Length = 331
Score = 57.8 bits (138), Expect = 4e-08
Identities = 51/234 (21%), Positives = 95/234 (39%), Gaps = 10/234 (4%)
Query: 84 VHSATFRQDGKLLVAGDATGLVSVYDSYNPRTLLLSIQASSHPTHVTKFHDQDNKTLVTA 143
++++ F DG L + + +++ + ++ KF+ D+ LV+A
Sbjct: 39 IYTSQFSSDGSFLASAGYDQQIFLWNVFGECENFAVLKGHKGAIMEVKFN-ADSSHLVSA 97
Query: 144 NDDRVVRLWDVSHAYEPTLQLTGASDYVRSVCFVPNAPHMVATGSYDGVVRLYDIRTKSD 203
D+ VR+WD+ +D V SV P M+ + S DG V ++D+R+K
Sbjct: 98 GTDKTVRVWDMETG-SCIRNFKSHTDIVNSVDVNRRGPQMICSASDDGTVMVHDMRSKEA 156
Query: 204 KPQTTLDHGLPVEDITAISPTQLASCGG--NGFKVWDLTSDRALCERQNFAKTVTCLNYT 261
+ + +T CGG N KVWD+ + T+T L+ +
Sbjct: 157 AKKFICKYQQTA--VTFNDAADNVICGGIDNQIKVWDMLRNDVRYVLSGHRDTITSLSVS 214
Query: 262 NMGEESPMSSVLVASSLDGHVKIFSPLENFQFKF---GWKFSNAVLSCAVSPGD 312
+ G +S+ + S + ++ F P + ++ F +L C SP D
Sbjct: 215 HNG-NFLLSNSMDCSLMSWDIRPFVPAQRLVARYQGASHNFEKNLLKCGWSPRD 267
>Hs16554627 [R] KOG0266 WD40 repeat-containing protein
Length = 334
Score = 57.4 bits (137), Expect = 5e-08
Identities = 56/246 (22%), Positives = 106/246 (42%), Gaps = 11/246 (4%)
Query: 3 SVRPRVTPVKAPVLPKQTTPEQRYWRSYSSTQLVKEHNAVTHIAFNPQHPHDFAVTSSTR 62
+ R + TP + K T + Y ++ L AV+ + F+P + ++
Sbjct: 12 AARAQPTPSSSATQSKPTPVKPNYALKFT---LAGHTKAVSSVKFSPNGEWLASSSADKL 68
Query: 63 VQVFSSRTRQVIKTFSRFKDVVHSATFRQDGKLLVAGDATGLVSVYDSYNPRTLLLSIQA 122
++++ + + KT S K + + D LLV+ + ++D + + L +++
Sbjct: 69 IKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKG 127
Query: 123 SSHPTHVTKFHDQDNKTLVTANDDRVVRLWDVSHAYEPTLQLTGASDYVRSVCFVPNAPH 182
S+ F+ Q N +V+ + D VR+WDV + L SD V +V F +
Sbjct: 128 HSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTG-KCLKTLPAHSDPVSAVHFNRDG-S 184
Query: 183 MVATGSYDGVVRLYDIRTKSDKPQTTLDHGLPVEDITAISPTQ---LASCGGNGFKVWDL 239
++ + SYDG+ R++D +T +D P SP LA+ N K+WD
Sbjct: 185 LIVSSSYDGLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 243
Query: 240 TSDRAL 245
+ + L
Sbjct: 244 SKGKCL 249
Score = 56.6 bits (135), Expect = 9e-08
Identities = 40/157 (25%), Positives = 73/157 (46%), Gaps = 4/157 (2%)
Query: 47 FNPQHPHDFAVTSSTRVQVFSSRTRQVIKTFSRFKDVVHSATFRQDGKLLVAGDATGLVS 106
FNPQ + + V+++ +T + +KT D V + F +DG L+V+ GL
Sbjct: 137 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 196
Query: 107 VYDSYNPRTLLLSIQASSHPTHVTKFHDQDNKTLVTANDDRVVRLWDVSHAYEPTLQLTG 166
++D+ + + L I + P KF + K ++ A D ++LWD S + TG
Sbjct: 197 IWDTASGQCLKTLIDDDNPPVSFVKF-SPNGKYILAATLDNTLKLWDYSKG-KCLKTYTG 254
Query: 167 ASD--YVRSVCFVPNAPHMVATGSYDGVVRLYDIRTK 201
+ Y F + +GS D +V +++++TK
Sbjct: 255 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 291
Score = 55.8 bits (133), Expect = 1e-07
Identities = 54/215 (25%), Positives = 102/215 (47%), Gaps = 18/215 (8%)
Query: 76 TFSRFKDVVHSATFRQDGKLLVAGDATGLVSVYDSYNPRTLLLSIQASSHPTHVTKFH-D 134
T + V S F +G+ L + A L+ ++ +Y+ + S H ++
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTISGHKLGISDVAWS 96
Query: 135 QDNKTLVTANDDRVVRLWDVSHAYEPTLQLTGASDYVRSVCFVPNAPHMVATGSYDGVVR 194
D+ LV+A+DD+ +++WDVS + L G S+YV F P + +++ +GS+D VR
Sbjct: 97 SDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVR 154
Query: 195 LYDIRTKSDKPQTTLDHGLPVEDITAISPTQL-ASCGGNGF-KVWDLTSDRALCERQNFA 252
++D++T +T H PV + L S +G ++WD S + L
Sbjct: 155 IWDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL------- 206
Query: 253 KTVTCLNY--TNMGEESPMSSVLVASSLDGHVKIF 285
KT+ + + + SP ++A++LD +K++
Sbjct: 207 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 241
>7290331 [R] KOG0266 WD40 repeat-containing protein
Length = 361
Score = 57.4 bits (137), Expect = 5e-08
Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 5/173 (2%)
Query: 32 STQLVKEH-NAVTHIAFNPQHPHDFAVTSSTRVQVFSSRTRQVIKTFSRFKDVVHSATFR 90
S + +K H N V FNPQ + + V+++ RT + +KT D V + F
Sbjct: 148 SLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFN 207
Query: 91 QDGKLLVAGDATGLVSVYDSYNPRTLLLSIQASSHPTHVTKFHDQDNKTLVTANDDRVVR 150
+DG L+V+ GL ++D+ + + L I + P KF + K ++ A D ++
Sbjct: 208 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF-SPNGKYILAATLDNTLK 266
Query: 151 LWDVSHAYEPTLQLTGASD--YVRSVCFVPNAPHMVATGSYDGVVRLYDIRTK 201
LWD S + TG + Y F + +GS D +V ++++++K
Sbjct: 267 LWDYSKG-KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQSK 318
Score = 52.4 bits (124), Expect = 2e-06
Identities = 51/215 (23%), Positives = 102/215 (46%), Gaps = 18/215 (8%)
Query: 76 TFSRFKDVVHSATFRQDGKLLVAGDATGLVSVYDSYNPRTLLLSIQASSHPTHVTKFH-D 134
T + V + F +G+ L + A L+ ++ +Y+ + S H ++
Sbjct: 67 TLAGHTKAVSAVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTISGHKLGISDVAWS 123
Query: 135 QDNKTLVTANDDRVVRLWDVSHAYEPTLQLTGASDYVRSVCFVPNAPHMVATGSYDGVVR 194
D++ LV+ +DD+ +++W++S + L G S+YV F P + +++ +GS+D VR
Sbjct: 124 SDSRLLVSGSDDKTLKVWELSTG-KSLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVR 181
Query: 195 LYDIRTKSDKPQTTLDHGLPVEDITAISPTQL-ASCGGNGF-KVWDLTSDRALCERQNFA 252
++D+RT +T H PV + L S +G ++WD S + L
Sbjct: 182 IWDVRT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL------- 233
Query: 253 KTVTCLNY--TNMGEESPMSSVLVASSLDGHVKIF 285
KT+ + + + SP ++A++LD +K++
Sbjct: 234 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 268
>At1g62020 [U] KOG0292 Vesicle coat complex COPI alpha subunit
Length = 1216
Score = 55.8 bits (133), Expect = 1e-07
Identities = 49/199 (24%), Positives = 86/199 (42%), Gaps = 10/199 (5%)
Query: 33 TQLVKEHNAVTHIAFNPQHPHDFAVTSSTRVQVFSSRTRQVIKTFSRFKDVVHSATFRQD 92
T+ + N V ++F+P+ P A S +Q++ R +I F + V F
Sbjct: 3 TKFETKSNRVKGLSFHPKRPWILASLHSGVIQLWDYRMGTLIDRFDEHEGPVRGVHFHNS 62
Query: 93 GKLLVAGDATGLVSVYDSYNPRTLLLSIQASSHPTHVTKFHDQDNKTLVTANDDRVVRLW 152
L V+G + V++ N R L + + +FH + +V+A+DD+ +R+W
Sbjct: 63 QPLFVSGGDDYKIKVWNYKNHRCLFTLLGHLDY-IRTVQFH-HEYPWIVSASDDQTIRIW 120
Query: 153 DVSHAYEPTLQLTGASDYVRSVCFVPNAPHMVATGSYDGVVRLYDIRTKSDKPQTTLDHG 212
+ ++ LTG + YV F P +V + S D VR++DI K +
Sbjct: 121 NWQSRTCVSV-LTGHNHYVMCASFHPK-EDLVVSASLDQTVRVWDIGALRKKTVS----- 173
Query: 213 LPVEDITAISPTQLASCGG 231
P +DI ++ GG
Sbjct: 174 -PADDIMRLTQMNSDLFGG 191
>YGL137w [U] KOG0276 Vesicle coat complex COPI beta' subunit
Length = 889
Score = 55.5 bits (132), Expect = 2e-07
Identities = 65/337 (19%), Positives = 134/337 (39%), Gaps = 21/337 (6%)
Query: 42 VTHIAFNPQHPHDFAVTSSTRVQVFSSRTRQVIKTFSRFKDVVHSATFRQDGKLLVAGDA 101
V I F+P P S RV++++ T+ +++ + V + F ++ G
Sbjct: 16 VKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD 75
Query: 102 TGLVSVYDSYNPRTLLLSIQASSHPTHVTKFHDQDNKTLV-TANDDRVVRLWDVSHAYEP 160
+ V+ +YN ++ +A HP ++ K V + +DD V+LW+ + +
Sbjct: 76 DFRIRVF-NYNTGEKVVDFEA--HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL 132
Query: 161 TLQLTGASDYVRSVCFVPNAPHMVATGSYDGVVRLYDI--RTKSDKPQTTLDHGLPVEDI 218
G +V V F P P A+G D V+++ + T + T + G+ D
Sbjct: 133 EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDY 192
Query: 219 TAI--SPTQLASCGGNGFKVWDLTSDRALCERQNFAKTVTCLNYTNMGEESPMSSVLVAS 276
+ P + + K+WD + + + V+ + P ++++
Sbjct: 193 YPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF------HPTLPIIISG 246
Query: 277 SLDGHVKIFSPLENFQFKFGWKFSNAVLSCAVSPGDAQGNKHFVA-GLSSGILAIXXXXX 335
S DG +KI++ + +K + + G K+++A G +G +
Sbjct: 247 SEDGTLKIWN---SSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGND 303
Query: 336 XXXINLADVSDLEDLPLQQQEKSAKSNNFQRMMRGSE 372
++L V L + +A S+ F ++RG+E
Sbjct: 304 EPTLSLDPVG---KLVWSGGKNAAASDIFTAVIRGNE 337
>CE18578 [A] KOG0265 U5 snRNP-specific protein-like factor and related
proteins
Length = 331
Score = 55.5 bits (132), Expect = 2e-07
Identities = 57/239 (23%), Positives = 98/239 (40%), Gaps = 22/239 (9%)
Query: 57 VTSSTRVQVFSSRTRQVIKTFSRF----------KDVVHSATFRQDGKLLVAGDATGLVS 106
VTSS + V S +Q + FS + +++ F DG L +
Sbjct: 4 VTSSGQQLVSSGFPQQTAQRFSNLMAPTMVLLGHEGEIYTGAFSPDGTCLATSGYDQKIF 63
Query: 107 VYDSYNPRTLLLSIQASSHPTHVTKFHDQDNKTLVTANDDRVVRLWDVSHAYEPTLQLTG 166
++ Y +I+ S KF D+ +LV+ D+ VR+WD+ +
Sbjct: 64 FWNVYGECENFSTIKGHSGAVMDLKF-TTDSSSLVSCGTDKSVRVWDMETG-TCARRFRT 121
Query: 167 ASDYVRSVCFVPNAPHMVATGSYDGVVRLYDIRTKSDKPQTTLDHGLPVEDITAISPTQL 226
+D+V +V +VA+ S DG R++D+RTK +P T + +T +
Sbjct: 122 HTDFVNAVHPSRRGVTLVASASDDGTCRVHDMRTK--EPVKTYTNRYQQTAVTFNDSSDQ 179
Query: 227 ASCGG--NGFKVWDLTSDRALCERQNFAKTVTCLNYTNMGEESPMSSVLVASSLDGHVK 283
GG N KVWD+ D T+T ++ SP ++++S+D V+
Sbjct: 180 VISGGIDNVLKVWDMRRDEITYTLTGHRDTITGISL------SPSGKFIISNSMDCTVR 232
>SPBPJ4664.04 [U] KOG0292 Vesicle coat complex COPI alpha subunit
Length = 1207
Score = 54.7 bits (130), Expect = 3e-07
Identities = 41/154 (26%), Positives = 70/154 (44%), Gaps = 4/154 (2%)
Query: 45 IAFNPQHPHDFAVTSSTRVQVFSSRTRQVIKTFSRFKDVVHSATFRQDGKLLVAGDATGL 104
+AF+P P + R+Q++ R ++ F V F L V+G
Sbjct: 17 VAFHPTQPWILTSLHNGRIQLWDYRMGTLLDRFDGHDGPVRGIAFHPTQPLFVSGGDDYK 76
Query: 105 VSVYDSYNPRTLLLSIQASSHPTHVTKFHDQDNKTLVTANDDRVVRLWDVSHAYEPTLQL 164
V+V+ +Y R LL S+ V FH + +++ +DD+ +R+W+ + L
Sbjct: 77 VNVW-NYKSRKLLFSLCGHMDYVRVCTFH-HEYPWILSCSDDQTIRIWN-WQSRNCIAIL 133
Query: 165 TGASDYVRSVCFVPNAPHMVATGSYDGVVRLYDI 198
TG S YV F P + ++ + S D VR++DI
Sbjct: 134 TGHSHYVMCAAFHP-SEDLIVSASLDQTVRVWDI 166
>CE27762 [R] KOG0274 Cdc4 and related F-box and WD-40 proteins
Length = 585
Score = 54.7 bits (130), Expect = 3e-07
Identities = 46/179 (25%), Positives = 78/179 (42%), Gaps = 21/179 (11%)
Query: 63 VQVFSSRTRQVIKTFSRFKDVVHSATFRQDGKLLVAGDATGLVSVYDSYNPRTLLLSIQA 122
V+++++ T + I+T + + V+S F + ++ +G + V+D P
Sbjct: 398 VKIWNAHTGRCIRTLTGHNNRVYSLLFESERSIVCSGSLDTSIRVWDFTRPEGQECVALL 457
Query: 123 SSHPTHVTKFHDQDNKTLVTANDDRVVRLWDVSHAYEPTLQLTGASDYVRSVCFVPNAPH 182
H T +T LV+ N D VR+WD+ H L+G + S+ + +
Sbjct: 458 QGH-TSLTSGMQLRGNILVSCNADSHVRVWDI-HEGTCVHMLSGHRSAITSLQWF--GRN 513
Query: 183 MVATGSYDGVVRLYDIRTKSDKPQTTLDHGLPVEDITAISPTQLASCGGNGFKVWDLTS 241
MVAT S DG V+L+DI + G + D+ + GGNG +W L S
Sbjct: 514 MVATSSDDGTVKLWDI-----------ERGALIRDLVTL------DSGGNGGCIWRLCS 555
>CE25007 [R] KOG0274 Cdc4 and related F-box and WD-40 proteins
Length = 587
Score = 54.7 bits (130), Expect = 3e-07
Identities = 46/179 (25%), Positives = 78/179 (42%), Gaps = 21/179 (11%)
Query: 63 VQVFSSRTRQVIKTFSRFKDVVHSATFRQDGKLLVAGDATGLVSVYDSYNPRTLLLSIQA 122
V+++++ T + I+T + + V+S F + ++ +G + V+D P
Sbjct: 400 VKIWNAHTGRCIRTLTGHNNRVYSLLFESERSIVCSGSLDTSIRVWDFTRPEGQECVALL 459
Query: 123 SSHPTHVTKFHDQDNKTLVTANDDRVVRLWDVSHAYEPTLQLTGASDYVRSVCFVPNAPH 182
H T +T LV+ N D VR+WD+ H L+G + S+ + +
Sbjct: 460 QGH-TSLTSGMQLRGNILVSCNADSHVRVWDI-HEGTCVHMLSGHRSAITSLQWF--GRN 515
Query: 183 MVATGSYDGVVRLYDIRTKSDKPQTTLDHGLPVEDITAISPTQLASCGGNGFKVWDLTS 241
MVAT S DG V+L+DI + G + D+ + GGNG +W L S
Sbjct: 516 MVATSSDDGTVKLWDI-----------ERGALIRDLVTL------DSGGNGGCIWRLCS 557
>CE18673 [U] KOG0276 Vesicle coat complex COPI beta' subunit
Length = 1000
Score = 54.7 bits (130), Expect = 3e-07
Identities = 57/251 (22%), Positives = 93/251 (36%), Gaps = 51/251 (20%)
Query: 10 PVKAPVLPKQTTPEQRYWRSYSSTQLVKEHNA----VTHIAFNPQHPHDFAVTSSTRVQV 65
PV+ +L W +Y + LVK V F P+ + ++V
Sbjct: 25 PVETWLLAALYNGNVHIW-NYETQTLVKSFEVCDVPVRAAKFVPRKSWVVTGSDDMHIRV 83
Query: 66 FSSRTRQVIKTFSRFKDVVHSATFRQDGKLLVAGDATGLVSVYDSYNPRTLLLSIQASSH 125
F+ T + + F D + S +++ LV ++D N + S + +H
Sbjct: 84 FNYNTLERVHQFEAHSDYLRSLVVHPTLPYVISSSDDMLVKMWDWDNKWAMKQSFEGHTH 143
Query: 126 PTHVTKFHDQDNKTLVTANDDRVVRLW---------------------DVSHAYEPTLQL 164
+ +DN T TA+ D+ V++W D H E +
Sbjct: 144 YVMQIAINPKDNNTFATASLDKTVKVWQFGSNVPNFTLEGHEKGVNCVDYYHGGEKPYII 203
Query: 165 TGASDY----------------------VRSVCFVPNAPHMVATGSYDGVVRLYDIRTKS 202
+GA D+ V SVCF P P ++ TGS D VRL+ T
Sbjct: 204 SGADDHLVKIWDYQNKTCVQTLDGHAQNVSSVCFHPELP-LIITGSEDSTVRLWHANTY- 261
Query: 203 DKPQTTLDHGL 213
+ +TTL++GL
Sbjct: 262 -RLETTLNYGL 271
Score = 50.8 bits (120), Expect = 5e-06
Identities = 54/195 (27%), Positives = 92/195 (46%), Gaps = 15/195 (7%)
Query: 96 LVAGDATGLVSVYDSYNPRTLLLSIQASSHPTHVTKFHDQDNKTLVTANDDRVVRLWDVS 155
L+A G V +++ Y +TL+ S + P KF + + +VT +DD +R+++ +
Sbjct: 30 LLAALYNGNVHIWN-YETQTLVKSFEVCDVPVRAAKFVPRKS-WVVTGSDDMHIRVFNYN 87
Query: 156 HAYEPTLQLTGASDYVRSVCFVPNAPHMVATGSYDGVVRLYDIRTKSDKPQTTLDHGLPV 215
E Q SDY+RS+ P P+++++ S D +V+++D K Q+ H V
Sbjct: 88 -TLERVHQFEAHSDYLRSLVVHPTLPYVISS-SDDMLVKMWDWDNKWAMKQSFEGHTHYV 145
Query: 216 EDITAISP----TQLASCGGNGFKVWDLTSDRALCERQNFAKTVTCLNYTNMGEESPMSS 271
I AI+P T + KVW S+ + K V C++Y + GE+
Sbjct: 146 MQI-AINPKDNNTFATASLDKTVKVWQFGSNVPNFTLEGHEKGVNCVDYYHGGEKP---- 200
Query: 272 VLVASSLDGH-VKIF 285
+ S D H VKI+
Sbjct: 201 -YIISGADDHLVKIW 214
>At4g02730 [R] KOG0266 WD40 repeat-containing protein
Length = 333
Score = 54.7 bits (130), Expect = 3e-07
Identities = 56/265 (21%), Positives = 106/265 (39%), Gaps = 40/265 (15%)
Query: 74 IKTFSRFKDVVHSATFRQDGKLLVAGDATGLVSVYDSYNPRTLLLSIQASSHPTHVTKFH 133
+KT + F DG LL + + ++ + N L + H + ++
Sbjct: 36 LKTLEGHTAAISCVKFSNDGNLLASASVDKTMILWSATN---YSLIHRYEGHSSGISDLA 92
Query: 134 -DQDNKTLVTANDDRVVRLWDVSHAYEPTLQLTGASDYVRSVCFVPNAPHMVATGSYDGV 192
D+ +A+DD +R+WD YE L G +++V V F P + +++ +GS+D
Sbjct: 93 WSSDSHYTCSASDDCTLRIWDARSPYECLKVLRGHTNFVFCVNFNPPS-NLIVSGSFDET 151
Query: 193 VRLYDIRTKSDKPQTTLDHGLPVEDI-------TAISPTQLASCGGNGFKVWDLTSDRAL 245
+R+++++T + H +P+ + +S + SC K+WD
Sbjct: 152 IRIWEVKT-GKCVRMIKAHSMPISSVHFNRDGSLIVSASHDGSC-----KIWD------- 198
Query: 246 CERQNFAKTVTCLN--------YTNMGEESPMSSVLVASSLDGHVKIFSPLENFQFKFGW 297
AK TCL + + SP ++ ++LD +K+ + K
Sbjct: 199 ------AKEGTCLKTLIDDKSPAVSFAKFSPNGKFILVATLDSTLKLSNYATGKFLKVYT 252
Query: 298 KFSNAVLSCAVSPGDAQGNKHFVAG 322
+N V C S K+ V+G
Sbjct: 253 GHTNKVF-CITSAFSVTNGKYIVSG 276
>At3g49660 [R] KOG0266 WD40 repeat-containing protein
Length = 317
Score = 54.7 bits (130), Expect = 3e-07
Identities = 39/168 (23%), Positives = 72/168 (42%), Gaps = 2/168 (1%)
Query: 35 LVKEHNAVTHIAFNPQHPHDFAVTSSTRVQVFSSRTRQVIKTFSRFKDVVHSATFRQDGK 94
L+ N + FNPQ + + V+++ T + +K D V + F +DG
Sbjct: 109 LIGHTNYAFCVNFNPQSNMIVSGSFDETVRIWDVTTGKCLKVLPAHSDPVTAVDFNRDGS 168
Query: 95 LLVAGDATGLVSVYDSYNPRTLLLSIQASSHPTHVTKFHDQDNKTLVTANDDRVVRLWDV 154
L+V+ GL ++DS + I + P +F + K ++ D +RLW++
Sbjct: 169 LIVSSSYDGLCRIWDSGTGHCVKTLIDDENPPVSFVRF-SPNGKFILVGTLDNTLRLWNI 227
Query: 155 SHA-YEPTLQLTGASDYVRSVCFVPNAPHMVATGSYDGVVRLYDIRTK 201
S A + T + Y S F + +GS D V ++++ +K
Sbjct: 228 SSAKFLKTYTGHVNAQYCISSAFSVTNGKRIVSGSEDNCVHMWELNSK 275
Score = 51.2 bits (121), Expect = 4e-06
Identities = 35/129 (27%), Positives = 63/129 (48%), Gaps = 5/129 (3%)
Query: 75 KTFSRFKDVVHSATFRQDGKLLVAGDATGLVSVY--DSYNPRTLLLSIQASSHPTHVTKF 132
+T + V S F DG+LL + A + Y ++ N + + H ++
Sbjct: 18 QTLTSHNRAVSSVKFSSDGRLLASASADKTIRTYTINTINDPIAEPVQEFTGHENGISDV 77
Query: 133 -HDQDNKTLVTANDDRVVRLWDVSHAYEPTLQLTGASDYVRSVCFVPNAPHMVATGSYDG 191
D + +V+A+DD+ ++LWDV L G ++Y V F P + +M+ +GS+D
Sbjct: 78 AFSSDARFIVSASDDKTLKLWDVETG-SLIKTLIGHTNYAFCVNFNPQS-NMIVSGSFDE 135
Query: 192 VVRLYDIRT 200
VR++D+ T
Sbjct: 136 TVRIWDVTT 144
Score = 50.1 bits (118), Expect = 8e-06
Identities = 50/251 (19%), Positives = 104/251 (40%), Gaps = 13/251 (5%)
Query: 40 NAVTHIAFNPQHPHDFAVTSSTRVQVFSSRTRQVIKTFSRFKDVVHSATFRQDGKLLVAG 99
N ++ +AF+ + + ++++ T +IKT + F ++V+G
Sbjct: 72 NGISDVAFSSDARFIVSASDDKTLKLWDVETGSLIKTLIGHTNYAFCVNFNPQSNMIVSG 131
Query: 100 DATGLVSVYDSYNPRTLLLSIQASSHPTHVTKFHDQDNKTLVTANDDRVVRLWDVSHAYE 159
V ++D + L + + A S P F ++D +V+++ D + R+WD +
Sbjct: 132 SFDETVRIWDVTTGKCLKV-LPAHSDPVTAVDF-NRDGSLIVSSSYDGLCRIWDSGTGHC 189
Query: 160 PTLQLTGASDYVRSVCFVPNAPHMVATGSYDGVVRLYDIRTKSDKPQTTLDHGLPVEDIT 219
+ + V V F PN + G+ D +RL++I + T +
Sbjct: 190 VKTLIDDENPPVSFVRFSPNG-KFILVGTLDNTLRLWNISSAKFLKTYTGHVNAQYCISS 248
Query: 220 AISPTQ----LASCGGNGFKVWDLTSDRALCERQNFAKTVTCLNYTNMGEESPMSSVLVA 275
A S T ++ N +W+L S + L + + +TV + P +++ +
Sbjct: 249 AFSVTNGKRIVSGSEDNCVHMWELNSKKLLQKLEGHTETVMNVAC------HPTENLIAS 302
Query: 276 SSLDGHVKIFS 286
SLD V+I++
Sbjct: 303 GSLDKTVRIWT 313
>At2g32700 [R] KOG0266 WD40 repeat-containing protein
Length = 787
Score = 54.7 bits (130), Expect = 3e-07
Identities = 42/190 (22%), Positives = 79/190 (41%), Gaps = 7/190 (3%)
Query: 62 RVQVFSSRTRQVIKTFSRFKDVVHSATFRQDGKLLVAGDATGLVSVYDSYNPRTLLLSIQ 121
+V +++ T QV T ++ FR + L + ++D+ +P L +I
Sbjct: 533 KVFIWNMETLQVESTPEEHAHIITDVRFRPNSTQLATSSFDKTIKIWDASDPGYFLRTIS 592
Query: 122 ASSHPTHVTKFHDQDNKTLVTANDDRVVRLWDVSHAYEPTLQLTGASDYVRSVCFVPNAP 181
+ P FH + + L + + + +R WD++ + ++ GAS VR F P
Sbjct: 593 GHAAPVMSIDFHPKKTELLCSCDSNNDIRFWDINASCVRAVK--GASTQVR---FQPRTG 647
Query: 182 HMVATGSYDGVVRLYDIRTKSDKPQTTLDHGLPVEDITAISPTQL-ASCGGNGFKVWDLT 240
+A S + V ++DI + + H V + +L AS + K+W L+
Sbjct: 648 QFLAAAS-ENTVSIFDIENNNKRVNIFKGHSSNVHSVCWSPNGELVASVSEDAVKLWSLS 706
Query: 241 SDRALCERQN 250
S + E N
Sbjct: 707 SGDCIHELSN 716
>SPAC630.14c [R] KOG0266 WD40 repeat-containing protein
Length = 586
Score = 54.3 bits (129), Expect = 4e-07
Identities = 38/163 (23%), Positives = 77/163 (46%), Gaps = 8/163 (4%)
Query: 42 VTHIAFNPQHPHDFAVTSSTRVQVFSSRTRQVIKTFSRFKDVVHSATFRQDGKLLVAGDA 101
V +AF+P + +++++ ++V + + + ++S F +DGK LV+G
Sbjct: 337 VRSVAFSPDGKYLATGVEDQQIRIWDIAQKRVYRLLTGHEQEIYSLDFSKDGKTLVSGSG 396
Query: 102 TGLVSVYD-SYNPRTLLLSIQASSHPTHVTKFHDQDNKTLVTANDDRVVRLWDVSHAYEP 160
V ++D + L+L T D + + + D+V+R+W S
Sbjct: 397 DRTVCLWDVEAGEQKLILHTDDGV----TTVMFSPDGQFIAAGSLDKVIRIWTSSGTL-- 450
Query: 161 TLQLTGASDYVRSVCFVPNAPHMVATGSYDGVVRLYDIRTKSD 203
QL G + V SV F P+ ++V +GS D ++L++++ S+
Sbjct: 451 VEQLHGHEESVYSVAFSPDGKYLV-SGSLDNTIKLWELQCVSN 492
>At2g41500 [A] KOG0272 U4/U6 small nuclear ribonucleoprotein Prp4 (contains
WD40 repeats)
Length = 554
Score = 54.3 bits (129), Expect = 4e-07
Identities = 46/182 (25%), Positives = 83/182 (45%), Gaps = 13/182 (7%)
Query: 88 TFRQDGKLLVAGDATGLVSVYDSYNPRTLLLSIQASSHPTHVTKFHDQDNKTLVTANDDR 147
+F +DGK+L +G+ +++ + ++ F D+ L TA+ DR
Sbjct: 262 SFSRDGKILATCSLSGVTKLWEMPQVTNTIAVLKDHKERATDVVFSPVDD-CLATASADR 320
Query: 148 VVRLWDVSHAYEPTLQLTGASDYVRSVCFVPNAPHMVATGSYDGVVRLYDIRTKSD---- 203
+LW T + G D + V F P+ ++ T SYD RL+DI T ++
Sbjct: 321 TAKLWKTDGTLLQTFE--GHLDRLARVAFHPSGKYL-GTTSYDKTWRLWDINTGAELLLQ 377
Query: 204 KPQTTLDHGLPVEDITAISPTQLASCGGNGF-KVWDLTSDRALCERQNFAKTVTCLNYTN 262
+ + +G+ + A++ ASCG + +VWDL + R++ Q K V +N++
Sbjct: 378 EGHSRSVYGIAFQQDGALA----ASCGLDSLARVWDLRTGRSILVFQGHIKPVFSVNFSP 433
Query: 263 MG 264
G
Sbjct: 434 NG 435
>SPBC15D4.14 [K] KOG0263 Transcription initiation factor TFIID subunit TAF5
(also component of histone acetyltransferase SAGA)
Length = 642
Score = 53.9 bits (128), Expect = 6e-07
Identities = 38/101 (37%), Positives = 48/101 (46%), Gaps = 3/101 (2%)
Query: 142 TANDDRVVRLWDVSHAYEPTLQLTGASDYVRSVCFVPNAPHMVATGSYDGVVRLYDIRTK 201
TA+ D+ RLWDV HA P G + V V F PNA ++ ATGS D R++D+RT
Sbjct: 462 TASHDQTARLWDVEHA-APLRVFVGHQNDVDCVSFHPNAAYL-ATGSSDHTTRMWDVRTG 519
Query: 202 SDKPQTTLDHGLPVEDITAISPTQLASCGGNG-FKVWDLTS 241
H + LAS +G KVWDL S
Sbjct: 520 GTVRVFNAHHSPVSALCMSADGLSLASADESGIIKVWDLRS 560
>SPAC18B11.10 [R] KOG0266 WD40 repeat-containing protein
Length = 614
Score = 53.5 bits (127), Expect = 7e-07
Identities = 57/211 (27%), Positives = 95/211 (45%), Gaps = 22/211 (10%)
Query: 83 VVHSATFRQDGKLLVAGDATGLVSVYDSYNPRTLLLSIQASSHPTHV----TKFHDQDNK 138
VV F +GK L G +V+D + L + S P+ T D K
Sbjct: 315 VVCCVKFSNNGKYLATG-CNQAANVFDVQTGKKLFTLHEESPDPSRDLYVRTIAFSPDGK 373
Query: 139 TLVTANDDRVVRLWDVSHAYEPTLQLTGASDYVRSVCFVPNAPHMVATGSYDGVVRLYDI 198
LVT +DR ++LWD+S + +G + S+ F N + +GS D RL+D+
Sbjct: 374 YLVTGTEDRQIKLWDLS-TQKVRYVFSGHEQDIYSLDFSHNG-RFIVSGSGDRTARLWDV 431
Query: 199 RTKSDKPQTTLDHGLPVEDITAISPT-QLASCGG--NGFKVWDLTSDRALCER-QNFAKT 254
T + +++G+ AISP Q + G +VW ++ L ER + ++
Sbjct: 432 ETGQCILKLEIENGVTA---IAISPNDQFIAVGSLDQIIRVWSVSG--TLVERLEGHKES 486
Query: 255 VTCLNYTNMGEESPMSSVLVASSLDGHVKIF 285
V + + SP SS+L++ SLD +K++
Sbjct: 487 VYSIAF------SPDSSILLSGSLDKTIKVW 511
>7296245 [A] KOG0265 U5 snRNP-specific protein-like factor and related
proteins
Length = 347
Score = 52.8 bits (125), Expect = 1e-06
Identities = 50/239 (20%), Positives = 101/239 (41%), Gaps = 22/239 (9%)
Query: 84 VHSATFRQDGKLLVAGDATGLVSVYDSYNPRTLLLSIQASSHPTHVTKFH-DQDNKTLVT 142
+ +A F +G+LL++ + ++ Y ++++ S H V + H D + T
Sbjct: 58 IFTAEFHPEGELLLSSGFDRQIYIWQVYEDCENVMAM--SGHSGAVMEAHFTPDGSHIFT 115
Query: 143 ANDDRVVRLWDVSHAYEPTLQLTGASDYVRSVCFVPNAPHMVATGSYDGVVRLYDIRTKS 202
+ D+ + WD++ + G ++V SV ++ +GS D ++++D R K
Sbjct: 116 CSTDKTLAFWDIATGQRQR-RFKGHGNFVNSVQGSRRGQQLLCSGSDDRTIKIWDARKKH 174
Query: 203 DKPQTTLDHGLPVEDITAISPTQLASCGG--NGFKVWDLTSDRALCERQNFAKTVTCLNY 260
TL+ V + + GG N K+WD+ L + + T+T ++
Sbjct: 175 --AAHTLESPFQVTAVCFGDTGEQVISGGIDNEVKIWDIRKQAVLHHLRGHSDTITGMSL 232
Query: 261 TNMGEESPMSSVLVASSLDGHVKI-----FSPLENFQFKF---GWKFSNAVLSCAVSPG 311
SP ++ +++D +++ ++P E F F +L CA SPG
Sbjct: 233 ------SPEGDFILTNAMDNTLRVWDVRPYAPGERCVKVFQGHQHNFEKNLLRCAWSPG 285
>7292122 [U] KOG0292 Vesicle coat complex COPI alpha subunit
Length = 1234
Score = 52.4 bits (124), Expect = 2e-06
Identities = 39/157 (24%), Positives = 71/157 (44%), Gaps = 4/157 (2%)
Query: 42 VTHIAFNPQHPHDFAVTSSTRVQVFSSRTRQVIKTFSRFKDVVHSATFRQDGKLLVAGDA 101
V ++F+P+ P S +Q++ R +++ F V F Q L V+G
Sbjct: 12 VKGLSFHPKRPWILVSLHSGVIQLWDYRMHTLLEKFDEHDGPVRGVAFHQQMPLFVSGGD 71
Query: 102 TGLVSVYDSYNPRTLLLSIQASSHPTHVTKFHDQDNKTLVTANDDRVVRLWDVSHAYEPT 161
+ V+ +Y R + ++ A FH + +++A+DD+ +R+W+ +
Sbjct: 72 DYKIKVW-NYKQRRCIFTLLAHLDYVRTVAFH-HEYPWILSASDDQTIRIWN-WQSRNCI 128
Query: 162 LQLTGASDYVRSVCFVPNAPHMVATGSYDGVVRLYDI 198
LTG + YV F P +V + S D VR++DI
Sbjct: 129 CVLTGHNHYVMCAQFHPTEDQIV-SASLDQTVRVWDI 164
>CE29136 [U] KOG0292 Vesicle coat complex COPI alpha subunit
Length = 1232
Score = 51.6 bits (122), Expect = 3e-06
Identities = 40/157 (25%), Positives = 71/157 (44%), Gaps = 4/157 (2%)
Query: 42 VTHIAFNPQHPHDFAVTSSTRVQVFSSRTRQVIKTFSRFKDVVHSATFRQDGKLLVAGDA 101
V I+F+P P S +Q++ R +++ F V F D + V+G
Sbjct: 14 VKGISFHPTRPWVLTSLHSGVIQLWDYRMCVLLEKFDEHDGPVRGICFHHDQPIFVSGGD 73
Query: 102 TGLVSVYDSYNPRTLLLSIQASSHPTHVTKFHDQDNKTLVTANDDRVVRLWDVSHAYEPT 161
+ V++ Y + + ++ T FH + +++A+DD+ VR+W+
Sbjct: 74 DYKIKVWN-YKQKRCIFTLLGHLDYIRTTFFHHK-YPWIISASDDQTVRIWNWQSRNSIA 131
Query: 162 LQLTGASDYVRSVCFVPNAPHMVATGSYDGVVRLYDI 198
+ LTG + YV F P +VA+ S D VR++DI
Sbjct: 132 I-LTGHNHYVMCAQFHP-TEDLVASASLDQTVRVWDI 166
>7291072 [R] KOG0315 G-protein beta subunit-like protein (contains WD40
repeats)
Length = 362
Score = 51.6 bits (122), Expect = 3e-06
Identities = 59/228 (25%), Positives = 103/228 (44%), Gaps = 9/228 (3%)
Query: 63 VQVFSSRTRQVIKTFSRFKDVVHSATFRQDGKLLVAGDATGLVSVYDSYNPRTLLLSIQA 122
++V+ + T IKT + +A R K +A + +YD + T + I
Sbjct: 18 IKVWQAHTGNCIKTMRFVETSQVNALDRTPDKTRLAACGYQCIRLYDLESNCTAPV-INF 76
Query: 123 SSHPTHVTKF-HDQDNKTLVTANDDRVVRLWDVSHAYEPTLQLTGASDYVRSVCFVPNAP 181
+VT+ +D + TA +D VR+WD+ A ++ V + C PN
Sbjct: 77 DGVQKNVTRLGFQEDGNWMFTAGEDHHVRIWDMIAAPPHCSRIFDCEAPVNAACLHPNQV 136
Query: 182 HMVATGSYDGVVRLYDIRTKSDKPQTTLDHGLPVEDITAISP--TQLASCGGNG-FKVWD 238
+A GS +G V L+D++++ + + + ++D+ AISP LA+ G +W
Sbjct: 137 E-IAMGSQNGSVFLWDVKSERHE-RIVPEVDASIQDV-AISPDGRYLAAANNKGNCYIWS 193
Query: 239 LTS-DRALCERQNFAKTVTCLNYTNMGEESPMSSVLVASSLDGHVKIF 285
LTS D+ + + K Y + SP S +L+ +S DG V I+
Sbjct: 194 LTSQDQKMSTLRPNRKIPAHSRYILRCKFSPDSRLLLTTSGDGTVCIW 241
>YCR084c [R] KOG0266 WD40 repeat-containing protein
Length = 713
Score = 51.2 bits (121), Expect = 4e-06
Identities = 61/259 (23%), Positives = 105/259 (39%), Gaps = 22/259 (8%)
Query: 84 VHSATFRQDGKLLVAGDATGLVSVYDSYNPRTLLLSIQASSHPTHVTKFHDQDNKTLVTA 143
+ S F DGK L G L+ ++D N R +++ +Q + + +K LV+
Sbjct: 446 IRSVCFSPDGKFLATGAEDRLIRIWDIEN-RKIVMILQGHEQDIYSLDYFPSGDK-LVSG 503
Query: 144 NDDRVVRLWDVSHAYEPTLQLTGASDYVRSVCFVPNAPHMVATGSYDGVVRLYDIRT--- 200
+ DR VR+WD+ + +L L+ D V +V P +A GS D VR++D T
Sbjct: 504 SGDRTVRIWDL-RTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL 561
Query: 201 ---KSDKPQTTLDHGLPVEDITAISPTQLASCGG--NGFKVWDLTSDRALCERQNFAKTV 255
+ ++ H V + Q G K+W+L + + + +
Sbjct: 562 VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKT-PNSG 620
Query: 256 TCLNYTNMGEESPMSSV--------LVASSLDGHVKIFSPLENFQFKFGWKFSNAVLSCA 307
TC T +G + + SV +++ S D V + N+V+S A
Sbjct: 621 TC-EVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVA 679
Query: 308 VSPGDAQGNKHFVAGLSSG 326
V+ G G ++ V SG
Sbjct: 680 VANGSPLGPEYNVFATGSG 698
>SPCC5E4.03c [K] KOG0263 Transcription initiation factor TFIID subunit TAF5
(also component of histone acetyltransferase SAGA)
Length = 643
Score = 51.2 bits (121), Expect = 4e-06
Identities = 58/234 (24%), Positives = 102/234 (42%), Gaps = 18/234 (7%)
Query: 84 VHSATFRQDGKLLVAGDATGLVSVYDSYNPRTLLLSIQASSHPTHVTKFHDQDNKTLVTA 143
V+ TF D K L++ ++ S + +T L++ + + P F + TA
Sbjct: 382 VYGTTFSPDNKYLLSCSEDASARLW-SVDTKTALVAYKGHTGPVWDVAFGPFGHY-FATA 439
Query: 144 NDDRVVRLWDVSHAYEPTLQLTGASDYVRSVCFVPNAPHMVATGSYDGVVRLYDIRTKSD 203
+ D+ +LW H Y P G V V F PN+ + V TGS D RL+D+ +
Sbjct: 440 SHDQTAQLWSCDHIY-PLRVFAGHLSDVDCVTFHPNSAY-VLTGSSDKTCRLWDVH-RGH 496
Query: 204 KPQTTLDHGLPVEDITAISPT--QLASCGGNG-FKVWDLTSDRALCERQNFAKTVTCLNY 260
+ H PV + AI+P +AS G +WD+ + R + + + L++
Sbjct: 497 SVRVFNGHTQPVTAV-AIAPDGHTMASADSEGLIHLWDIGTGRRIKTMRGHRGNIYSLSF 555
Query: 261 TNMGEESPMSSVLVASSLDGHVKIFSPLENFQFKFGWKFSNAVLSCAVSPGDAQ 314
S S+VLV+ D V+ + + F+ + S+++ V+P A+
Sbjct: 556 ------SRESTVLVSGGSDCTVRAW---DVFKTNYNNPVSSSLTGSVVTPFSAK 600
>CE20251_2 [U] KOG0276 Vesicle coat complex COPI beta' subunit
Length = 287
Score = 51.2 bits (121), Expect = 4e-06
Identities = 52/298 (17%), Positives = 119/298 (39%), Gaps = 20/298 (6%)
Query: 36 VKEHNAVTHIAFNPQHPHDFAVTSSTRVQVFSSRTRQVIKTFSRFKDVVHSATFRQDGKL 95
V + V + F+ + P + VQ+++ T+ ++K + +A F
Sbjct: 5 VSHSDRVKSVDFHSEKPWILTALHTGNVQIWNYDTKTLVKAMEVSEKSTRAAKFIHRKNW 64
Query: 96 LVAGDATGLVSVYDSYNPRTLLLSIQASSHPTHVTKFHDQDNKT-LVTANDDRVVRLWDV 154
+ + ++D+ T L + ++H + L++A+DDR +R+WD
Sbjct: 65 IATASDDQQIRIFDA---ETFSLINEFTAHSDFIRSLTVHPTLPYLISASDDRKIRVWDW 121
Query: 155 SHAYEPTLQLTGASDYVRSVCFVPNAPHMVATGSYDGVVRLYDIRTKSDKPQTTLDHGLP 214
+ + + + Y+ + P P M +GS D ++++ + + + T H
Sbjct: 122 ENEWRMEQEFQEHAHYIMQIAVNPEDPEMFVSGSLDKTLKVWKL-GEQESICTLEGHEKG 180
Query: 215 VEDITAISPTQLASCGGN-GFKVWDLTSDRALCERQNFAKTVTCLNYTNMGEESPMSSVL 273
V + ++ ++ S + VWD+ + + + +T+ + N+ +P + +
Sbjct: 181 VNCVEFLTGGRIVSGSDDCSICVWDIQTQKCI-------ETLKNAHKNNVTFVTPFKTWI 233
Query: 274 VASSLDGHVKIFSPLENFQFKFGWKFSNAVLSC-AVSPGDAQGNKHFVAGLSSGILAI 330
++ + D VKI++ + F + F C A DA G SG + +
Sbjct: 234 ISGAEDSTVKIWNS-QTFSLEKELNFEKGRAWCVAAGKSDA-----IAVGFDSGAVTV 285
>CE02043 [R] KOG0289 mRNA splicing factor
Length = 509
Score = 50.8 bits (120), Expect = 5e-06
Identities = 55/256 (21%), Positives = 107/256 (41%), Gaps = 12/256 (4%)
Query: 34 QLVKEHNA-VTHIAFNPQHPHDFAVTSSTRVQVFSSRTRQVIKTFSRFKDVVHSATFRQD 92
Q K HN + + +P + + ++ + ++V+S+ + V +
Sbjct: 262 QTFKGHNKKINAVVLHPDNITAISASADSHIRVWSATDSSSKAIIDVHQAPVTDISLNAS 321
Query: 93 GKLLVAGDATGLVSVYDSYNPRTLL-LSIQASSH-PTHVTKFHDQDNKTLVTANDDRVVR 150
G +++ + D + ++L +S++ S H +FH D T D VV+
Sbjct: 322 GDYILSASDDSYWAFSDIRSGKSLCKVSVEPGSQIAVHSIEFHP-DGLIFGTGAADAVVK 380
Query: 151 LWDVSHAYEPTLQLTGASDYVRSVCFVPNAPHMVATGSYDGVVRLYDIRTKSDKPQTTLD 210
+WD+ + G + VRS+ F N + +ATGS DG V+L+D+R + +
Sbjct: 381 IWDLKNQ-TVAAAFPGHTAAVRSIAFSENG-YYLATGSEDGEVKLWDLRKLKNLKTFANE 438
Query: 211 HGLPVEDITAISPTQLASCGGNGFKVWDLTSDRALCERQNFAKTVTCLNYTNMGEESPMS 270
P+ ++ GG +V + S + + + VT + + GE +
Sbjct: 439 EKQPINSLSFDMTGTFLGIGGQKVQVLHVKSWSEVVSLSDHSGPVTGVRF---GEN---A 492
Query: 271 SVLVASSLDGHVKIFS 286
LV SLD +++FS
Sbjct: 493 RSLVTCSLDKSLRVFS 508
>SPAC227.12 [A] KOG0272 U4/U6 small nuclear ribonucleoprotein Prp4 (contains
WD40 repeats)
Length = 462
Score = 50.4 bits (119), Expect = 6e-06
Identities = 56/196 (28%), Positives = 89/196 (44%), Gaps = 13/196 (6%)
Query: 96 LVAGDATGLVSVYDSYNPRTLLLSIQASSHPTHVTKFHDQDNKTLVTANDDRVVRLWDVS 155
L G A V ++ + + T LL ++ FH + LV+A+ D RLWDV
Sbjct: 238 LATGAADNTVCLWKA-SQSTPLLRLEGHLARVGRVAFHPSGDY-LVSASFDTTWRLWDVH 295
Query: 156 HAYEPTLQLTGASDYVRSVCFVPNAPHMVATGSYDGVVRLYDIRTKSDKPQTTLDHGLPV 215
E +Q G S+ + S+ P+ +V++G D + R++D+R S K LD +
Sbjct: 296 TGVELLMQ-EGHSEGIFSIACQPDGS-LVSSGGNDAIGRIWDLR--SGKSIMVLDEHIRQ 351
Query: 216 EDITAISPT--QLA-SCGGNGFKVWDLTSDRALCERQNFAKTVTCLNYTNMGEESPMSSV 272
A SP QLA S + K+WDL + V+ + Y ES ++
Sbjct: 352 IVAMAWSPNGYQLATSSADDTVKIWDLRKVSLAHTIPAHSSLVSDVRYI----ESGVNRF 407
Query: 273 LVASSLDGHVKIFSPL 288
+ S DG VK+++PL
Sbjct: 408 IATSGYDGCVKLWNPL 423
>SPAC12G12.14c [A] KOG0284 Polyadenylation factor I complex subunit PFS2
Length = 509
Score = 50.4 bits (119), Expect = 6e-06
Identities = 36/117 (30%), Positives = 62/117 (52%), Gaps = 5/117 (4%)
Query: 84 VHSATFRQDGKLLVAGDATGLVSVYDSYNPRTLLLSIQASSHPTHVTKFHDQDNKTLVTA 143
V A + DG+ L++GD G+V ++ + +QA F D+K VTA
Sbjct: 126 VRCAEWSTDGRWLISGDGGGMVKYFEPNLNNVKI--VQAHEMEVRDVAFSPNDSK-FVTA 182
Query: 144 NDDRVVRLWDVSHAYEPTLQLTGASDYVRSVCFVPNAPHMVATGSYDGVVRLYDIRT 200
+DD +++W+ H L+LTG V++V + P + ++A+GS D +V+ +D RT
Sbjct: 183 SDDGSLKVWNF-HMSTEELKLTGHGWDVKTVDWHP-SKGLLASGSKDNLVKFWDPRT 237
>Hs5174447 [T] KOG0279 G protein beta subunit-like protein
Length = 317
Score = 50.4 bits (119), Expect = 6e-06
Identities = 52/224 (23%), Positives = 98/224 (43%), Gaps = 21/224 (9%)
Query: 36 VKEHNA-VTHIAFNPQHPHDFAVTSSTRVQVFSSRTR---------QVIKTFSRF-KDVV 84
+K HN VT IA PQ P S + + TR + ++ S F DVV
Sbjct: 11 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 70
Query: 85 HSATFRQDGKLLVAGDATGLVSVYDSYNPRTLLLSIQASSHPTHVTKFHDQDNKTLVTAN 144
S+ DG+ ++G G + ++D T + + V DN+ +V+ +
Sbjct: 71 ISS----DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVA--FSSDNRQIVSGS 124
Query: 145 DDRVVRLWDVSHAYEPTLQLTGASDYVRSVCFVPNAPH-MVATGSYDGVVRLYDIRTKSD 203
D+ ++LW+ + T+Q S++V V F PN+ + ++ + +D +V+++++
Sbjct: 125 RDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL 184
Query: 204 KPQTTLDHGLPVEDITAISPTQLASCGGNGFK--VWDLTSDRAL 245
K + H + +T L + GG + +WDL + L
Sbjct: 185 K-TNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL 227
>Hs5031817 [D] KOG0267 Microtubule severing protein katanin p80 subunit B
(contains WD40 repeats)
Length = 655
Score = 50.4 bits (119), Expect = 6e-06
Identities = 36/143 (25%), Positives = 69/143 (48%), Gaps = 4/143 (2%)
Query: 56 AVTSSTRVQVFSSRTRQVIKTFSRFKDVVHSATFRQDGKLLVAGDATGLVSVYDSYNPRT 115
A + S ++V+ ++++T K + S F G+ + +G + ++D +
Sbjct: 80 AGSQSGSIRVWDLEAAKILRTLMGLKANICSLDFHPYGEFVASGSQDTNIKLWD-IRRKG 138
Query: 116 LLLSIQASSHPTHVTKFHDQDNKTLVTANDDRVVRLWDVSHAYEPTLQLTGASDYVRSVC 175
+ + S +F D K L +A DD V+LWD++ A + + G + V V
Sbjct: 139 CVFRYRGHSQAVRCLRF-SPDGKWLASAADDHTVKLWDLT-AGKMMSEFPGHTGPVNVVE 196
Query: 176 FVPNAPHMVATGSYDGVVRLYDI 198
F PN +++A+GS DG +R +D+
Sbjct: 197 FHPN-EYLLASGSSDGTIRFWDL 218
>SPBC713.05 [S] KOG0316 Conserved WD40 repeat-containing protein
Length = 297
Score = 50.1 bits (118), Expect = 8e-06
Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 10/97 (10%)
Query: 133 HDQDNKTLVTANDDRVVRLWDV-SHAYEPTLQLTGASDYVRSVCFVPNAPHMVATGSYDG 191
+++D+ L + + D VRLWD S+++ P L A D V S+ A H++ TGS DG
Sbjct: 106 YNEDSSILASGSFDSKVRLWDCRSNSFSPIQVLADAKDSVSSIDI---AEHLIVTGSTDG 162
Query: 192 VVRLYDIRTKSDKPQTTLDHGLPVEDITAISPTQLAS 228
+R YDIR + TL IT++ ++ AS
Sbjct: 163 TLRTYDIR------KGTLSSDYFSHPITSVKTSKSAS 193
>CE06574 [R] KOG0266 WD40 repeat-containing protein
Length = 501
Score = 50.1 bits (118), Expect = 8e-06
Identities = 49/207 (23%), Positives = 84/207 (39%), Gaps = 15/207 (7%)
Query: 40 NAVTHIAFNPQHPHDFAVTSSTRVQVFSSRTRQVIKTFSRFKDVVHSATFRQDGKLLVAG 99
N V +FNPQ + V+V+ +T +K D + S ++ DG +
Sbjct: 298 NYVFCCSFNPQSSLIASAGFDETVRVWDFKTGLCVKCIPAHSDPITSISYNHDGNTMATS 357
Query: 100 DATGLVSVYDSYNPRTLLLSIQASSHPTHVTKFHDQDNKTLVTANDDRVVRLWDVSHAYE 159
G + V+D+ + L + P F + K L++A D ++LWD A +
Sbjct: 358 SYDGCIRVWDAASGSCLKTLVDTDHAPVTFVCF-SPNGKYLLSAQLDSSLKLWDPKKA-K 415
Query: 160 PTLQLTGASDYVRSVCF-----VPNAPHMVATGSYDGVVRLYDIRTKSDKPQTTLDHGLP 214
P G + + C VP H++ +GS DG + ++ I+TK Q H P
Sbjct: 416 PLKYYNGHKN--KKYCLFANMSVPLGKHII-SGSEDGRILVWSIQTK-QIVQILEGHTTP 471
Query: 215 VEDITAISPTQLASCGG----NGFKVW 237
V + + + GG N ++W
Sbjct: 472 VLATDSHPTLNIIASGGLEPDNVIRIW 498
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.318 0.132 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,543,202
Number of Sequences: 60738
Number of extensions: 1281438
Number of successful extensions: 5614
Number of sequences better than 1.0e-05: 51
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 5415
Number of HSP's gapped (non-prelim): 128
length of query: 520
length of database: 30,389,216
effective HSP length: 111
effective length of query: 409
effective length of database: 23,647,298
effective search space: 9671744882
effective search space used: 9671744882
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)