ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI3704 check: MH A KOG0348 RNA processing and modification ATP-dependent RNA helicase
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI3704 1292228 1290009 -740
(740 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YKR024c [A] KOG0348 ATP-dependent RNA helicase 877 0.0
SPBC21H7.04 [A] KOG0348 ATP-dependent RNA helicase 421 e-117
Hs17505907 [A] KOG0348 ATP-dependent RNA helicase 283 7e-76
7293348 [A] KOG0348 ATP-dependent RNA helicase 272 2e-72
At2g40700 [A] KOG0348 ATP-dependent RNA helicase 269 1e-71
At5g65900 [A] KOG0342 ATP-dependent RNA helicase pitchoune 211 3e-54
YMR290c [A] KOG0342 ATP-dependent RNA helicase pitchoune 204 4e-52
7300808 [A] KOG0342 ATP-dependent RNA helicase pitchoune 204 5e-52
At3g18600 [A] KOG0342 ATP-dependent RNA helicase pitchoune 202 2e-51
SPAC1F7.02c [A] KOG0342 ATP-dependent RNA helicase pitchoune 199 1e-50
Hs13787206 [A] KOG0342 ATP-dependent RNA helicase pitchoune 197 4e-50
Hs20336298 [A] KOG0348 ATP-dependent RNA helicase 193 7e-49
SPAC1093.05 [A] KOG0343 RNA Helicase 193 9e-49
CE26853 [A] KOG0342 ATP-dependent RNA helicase pitchoune 191 5e-48
YJL033w [A] KOG0343 RNA Helicase 180 8e-45
Hs20149629 [A] KOG0330 ATP-dependent RNA helicase 174 6e-43
SPBC24C6.02 [A] KOG0345 ATP-dependent RNA helicase 172 2e-42
ECU10g1680 [A] KOG0343 RNA Helicase 171 5e-42
7293369 [A] KOG0343 RNA Helicase 164 6e-40
7298752 [A] KOG0330 ATP-dependent RNA helicase 162 1e-39
Hs13514831 [A] KOG0343 RNA Helicase 160 7e-39
CE00337 [A] KOG0330 ATP-dependent RNA helicase 159 2e-38
YGL078c [A] KOG0331 ATP-dependent RNA helicase 158 3e-38
CE25231 [A] KOG0343 RNA Helicase 155 2e-37
At2g42520 [A] KOG0335 ATP-dependent RNA helicase 155 2e-37
YHR065c [A] KOG0330 ATP-dependent RNA helicase 154 4e-37
ECU10g0690 [A] KOG0345 ATP-dependent RNA helicase 154 5e-37
At3g58570 [A] KOG0335 ATP-dependent RNA helicase 153 8e-37
At5g54910 [A] KOG0343 RNA Helicase 152 1e-36
At5g05450 [A] KOG0345 ATP-dependent RNA helicase 152 1e-36
Hs19743937 [A] KOG0338 ATP-dependent RNA helicase 152 2e-36
Hs13514809 [A] KOG0335 ATP-dependent RNA helicase 151 3e-36
7299006 [A] KOG0345 ATP-dependent RNA helicase 151 4e-36
At3g58510 [A] KOG0335 ATP-dependent RNA helicase 150 5e-36
SPBC17D1.06 [A] KOG0331 ATP-dependent RNA helicase 150 9e-36
SPAC30D11.03 [A] KOG0338 ATP-dependent RNA helicase 149 1e-35
ECU10g0440 [A] KOG0330 ATP-dependent RNA helicase 149 1e-35
At1g71370 [A] KOG0345 ATP-dependent RNA helicase 149 1e-35
Hs13514813 [A] KOG0335 ATP-dependent RNA helicase 149 2e-35
CE28031 [A] KOG0334 RNA helicase 149 2e-35
CE27427 [A] KOG0334 RNA helicase 149 2e-35
SPBC691.04 [A] KOG0342 ATP-dependent RNA helicase pitchoune 148 3e-35
Hs13129006 [A] KOG0331 ATP-dependent RNA helicase 148 3e-35
7299061 [A] KOG0335 ATP-dependent RNA helicase 148 3e-35
7295314 [A] KOG0331 ATP-dependent RNA helicase 146 1e-34
YLL008w [A] KOG0338 ATP-dependent RNA helicase 146 1e-34
YFL002c [A] KOG0345 ATP-dependent RNA helicase 145 2e-34
SPAC823.08c [A] KOG0330 ATP-dependent RNA helicase 145 2e-34
At3g06480 [A] KOG0331 ATP-dependent RNA helicase 145 3e-34
CE26887 [A] KOG0333 U5 snRNP-like RNA helicase subunit 144 4e-34
CE24878 [A] KOG0333 U5 snRNP-like RNA helicase subunit 144 4e-34
YDR194c [A] KOG0342 ATP-dependent RNA helicase pitchoune 144 6e-34
7290853 [A] KOG0331 ATP-dependent RNA helicase 142 1e-33
SPCC10H11.01 [A] KOG0334 RNA helicase 142 2e-33
Hs7662318 [A] KOG0334 RNA helicase 141 3e-33
CE22474 [A] KOG0336 ATP-dependent RNA helicase 139 1e-32
At2g33730 [A] KOG0333 U5 snRNP-like RNA helicase subunit 139 1e-32
7304081 [A] KOG0338 ATP-dependent RNA helicase 139 2e-32
Hs5453840_1 [A] KOG0331 ATP-dependent RNA helicase 139 2e-32
Hs13787209 [A] KOG0331 ATP-dependent RNA helicase 137 5e-32
7298204 [A] KOG0335 ATP-dependent RNA helicase 137 6e-32
At5g08610 [A] KOG0342 ATP-dependent RNA helicase pitchoune 137 8e-32
Hs19923595 [A] KOG0337 ATP-dependent RNA helicase 136 1e-31
7294797 [A] KOG0339 ATP-dependent RNA helicase 136 1e-31
At4g34910 [A] KOG0346 RNA helicase 136 1e-31
SPCC285.03 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 135 2e-31
At5g60990 [A] KOG0330 ATP-dependent RNA helicase 135 2e-31
YPL119c [A] KOG0335 ATP-dependent RNA helicase 135 2e-31
YHR169w [A] KOG0340 ATP-dependent RNA helicase 135 2e-31
At3g01540 [A] KOG0331 ATP-dependent RNA helicase 134 5e-31
At5g08620 [A] KOG0342 ATP-dependent RNA helicase pitchoune 133 9e-31
At1g77050 [A] KOG0337 ATP-dependent RNA helicase 133 9e-31
At1g16280 [A] KOG0340 ATP-dependent RNA helicase 132 1e-30
7296646 [A] KOG0331 ATP-dependent RNA helicase 132 1e-30
Hs4758138 [A] KOG0331 ATP-dependent RNA helicase 132 2e-30
7298459 [A] KOG0333 U5 snRNP-like RNA helicase subunit 132 2e-30
7293060 [A] KOG0334 RNA helicase 132 2e-30
At1g63250 [A] KOG0342 ATP-dependent RNA helicase pitchoune 131 3e-30
YDR243c [A] KOG0333 U5 snRNP-like RNA helicase subunit 130 6e-30
SPCC1795.11 [A] KOG0335 ATP-dependent RNA helicase 130 6e-30
YNR038w [A] KOG0350 DEAD-box ATP-dependent RNA helicase 130 7e-30
SPBC543.06c [A] KOG0340 ATP-dependent RNA helicase 130 7e-30
Hs21071032 [A] KOG0341 DEAD-box protein abstrakt 130 1e-29
At3g22330 [A] KOG0331 ATP-dependent RNA helicase 130 1e-29
YOR204w [A] KOG0335 ATP-dependent RNA helicase 129 1e-29
Hs9507237 [A] KOG0335 ATP-dependent RNA helicase 129 1e-29
CE03821 [A] KOG0345 ATP-dependent RNA helicase 129 1e-29
At5g63630 [A] KOG0342 ATP-dependent RNA helicase pitchoune 129 1e-29
CE27030 [A] KOG0338 ATP-dependent RNA helicase 129 2e-29
At1g72730 [J] KOG0327 Translation initiation factor 4F helicase ... 129 2e-29
7297048 [J] KOG0327 Translation initiation factor 4F helicase su... 129 2e-29
At2g47330 [A] KOG0339 ATP-dependent RNA helicase 129 2e-29
At1g55150 [A] KOG0331 ATP-dependent RNA helicase 129 2e-29
YDL031w [A] KOG0337 ATP-dependent RNA helicase 127 5e-29
CE23814 [A] KOG0340 ATP-dependent RNA helicase 127 5e-29
YBR237w [A] KOG0334 RNA helicase 127 6e-29
Hs11321632 [A] KOG0339 ATP-dependent RNA helicase 127 6e-29
CE18785 [A] KOG0331 ATP-dependent RNA helicase 127 6e-29
At5g51280 [A] KOG0341 DEAD-box protein abstrakt 127 6e-29
ECU08g1080 [A] KOG0331 ATP-dependent RNA helicase 126 1e-28
CE23832 [A] KOG0341 DEAD-box protein abstrakt 126 1e-28
At5g63120 [A] KOG0331 ATP-dependent RNA helicase 126 1e-28
Hs10346129 [A] KOG0336 ATP-dependent RNA helicase 125 2e-28
At5g14610 [A] KOG0331 ATP-dependent RNA helicase 125 2e-28
At2g07750 [A] KOG0342 ATP-dependent RNA helicase pitchoune 125 2e-28
7296891 [A] KOG0341 DEAD-box protein abstrakt 125 2e-28
SPCC1494.06c [A] KOG0346 RNA helicase 124 5e-28
ECU02g0670 [A] KOG0335 ATP-dependent RNA helicase 124 5e-28
CE25121 [A] KOG0335 ATP-dependent RNA helicase 124 5e-28
SPAC1006.07 [J] KOG0327 Translation initiation factor 4F helicas... 123 9e-28
CE09012 [A] KOG0335 ATP-dependent RNA helicase 123 9e-28
At4g33370 [A] KOG0341 DEAD-box protein abstrakt 123 9e-28
YLR276c [A] KOG0346 RNA helicase 123 1e-27
CE07736 [A] KOG0335 ATP-dependent RNA helicase 123 1e-27
SPAC31A2.07c [A] KOG0337 ATP-dependent RNA helicase 122 2e-27
YDR021w [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 122 3e-27
At3g13920 [J] KOG0327 Translation initiation factor 4F helicase ... 122 3e-27
SPBP8B7.16c [A] KOG0331 ATP-dependent RNA helicase 121 3e-27
Hs22054507 [A] KOG0342 ATP-dependent RNA helicase pitchoune 121 3e-27
YNL112w [A] KOG0331 ATP-dependent RNA helicase 121 4e-27
CE01341 [J] KOG0327 Translation initiation factor 4F helicase su... 121 4e-27
At1g20920 [A] KOG0334 RNA helicase 120 6e-27
7298989 [A] KOG0336 ATP-dependent RNA helicase 120 6e-27
CE11190 [A] KOG0347 RNA helicase 120 8e-27
At3g22310 [A] KOG0331 ATP-dependent RNA helicase 120 8e-27
SPAC22F3.08c [A] KOG0344 ATP-dependent RNA helicase 119 2e-26
Hs4503529 [J] KOG0327 Translation initiation factor 4F helicase ... 117 5e-26
At5g62190 [A] KOG0331 ATP-dependent RNA helicase 117 5e-26
At1g54270 [J] KOG0327 Translation initiation factor 4F helicase ... 117 5e-26
7291960_2 [A] KOG0337 ATP-dependent RNA helicase 117 5e-26
7302399 [A] KOG0347 RNA helicase 117 6e-26
CE09901 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 117 8e-26
Hs22057246 [A] KOG0336 ATP-dependent RNA helicase 115 2e-25
Hs4503531 [J] KOG0327 Translation initiation factor 4F helicase ... 115 2e-25
7294064 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 115 3e-25
7303950 [A] KOG0340 ATP-dependent RNA helicase 114 5e-25
At3g16840 [A] KOG0347 RNA helicase 114 7e-25
CE27553 [A] KOG0337 ATP-dependent RNA helicase 113 1e-24
YBR142w [A] KOG0347 RNA helicase 112 3e-24
SPBC4F6.07c [A] KOG0347 RNA helicase 112 3e-24
SPAC1F5.10 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1... 112 3e-24
CE28369 [A] KOG0335 ATP-dependent RNA helicase 110 8e-24
CE24451 [A] KOG0335 ATP-dependent RNA helicase 110 8e-24
YDL160c [A] KOG0326 ATP-dependent RNA helicase 109 2e-23
7294824 [K] KOG4284 DEAD box protein 109 2e-23
7293941 [A] KOG0344 ATP-dependent RNA helicase 109 2e-23
At1g12770_1 [J] KOG0327 Translation initiation factor 4F helicas... 109 2e-23
Hs7661920 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 108 3e-23
CE27728 [A] KOG0346 RNA helicase 107 5e-23
CE06239 [A] KOG0344 ATP-dependent RNA helicase 107 7e-23
Hs13775232 [A] KOG0331 ATP-dependent RNA helicase 107 9e-23
At3g19760 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 107 9e-23
YKR059w [J] KOG0327 Translation initiation factor 4F helicase su... 106 1e-22
YJL138c [J] KOG0327 Translation initiation factor 4F helicase su... 106 1e-22
Hs8922976 [A] KOG0330 ATP-dependent RNA helicase 106 1e-22
7299019 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 105 2e-22
At3g06980 [A] KOG0331 ATP-dependent RNA helicase 105 3e-22
Hs15316941 [A] KOG0344 ATP-dependent RNA helicase 104 6e-22
Hs4758140 [A] KOG0326 ATP-dependent RNA helicase 103 1e-21
At4g15850 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 103 1e-21
At3g61240 [A] KOG0326 ATP-dependent RNA helicase 102 2e-21
YGL171w [A] KOG0344 ATP-dependent RNA helicase 102 3e-21
ECU09g1640 [A] KOG0326 ATP-dependent RNA helicase 102 3e-21
SPCC63.11 [A] KOG0333 U5 snRNP-like RNA helicase subunit 100 1e-20
Hs9506609 [A] KOG0340 ATP-dependent RNA helicase 99 2e-20
7297629 [A] KOG0326 ATP-dependent RNA helicase 99 2e-20
CE11402 [A] KOG0334 RNA helicase 98 4e-20
At2g45810 [A] KOG0326 ATP-dependent RNA helicase 98 4e-20
CE25531 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 98 5e-20
Hs4759278 [A] KOG0333 U5 snRNP-like RNA helicase subunit 97 7e-20
Hs17474597 [A] KOG0333 U5 snRNP-like RNA helicase subunit 97 7e-20
At1g51380 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 96 2e-19
Hs9966805 [A] KOG0347 RNA helicase 96 3e-19
Hs9506931 [A] KOG0346 RNA helicase 96 3e-19
CE00839 [A] KOG0326 ATP-dependent RNA helicase 94 6e-19
At1g71280 [A] KOG0345 ATP-dependent RNA helicase 94 6e-19
Hs20551983 [A] KOG0345 ATP-dependent RNA helicase 94 8e-19
At1g31970 [A] KOG0331 ATP-dependent RNA helicase 94 1e-18
7296165 [A] KOG0330 ATP-dependent RNA helicase 94 1e-18
ECU09g1200 [J] KOG0327 Translation initiation factor 4F helicase... 93 2e-18
7295505 [A] KOG0346 RNA helicase 92 3e-18
YOR046c [A] KOG0332 ATP-dependent RNA helicase 91 5e-18
Hs14251212 [K] KOG4284 DEAD box protein 91 6e-18
At3g09720 [A] KOG0344 ATP-dependent RNA helicase 91 8e-18
SPAC17G6.14c [A] KOG0329 ATP-dependent RNA helicase 89 2e-17
7296530 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 89 2e-17
Hs4826686 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 88 4e-17
ECU02g1520 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1... 88 4e-17
At5g11170 [A] KOG0329 ATP-dependent RNA helicase 88 5e-17
At4g09730 [A] KOG0331 ATP-dependent RNA helicase 86 2e-16
At5g11200 [A] KOG0329 ATP-dependent RNA helicase 86 2e-16
CE17559 [A] KOG0339 ATP-dependent RNA helicase 85 4e-16
At4g16630 [A] KOG0338 ATP-dependent RNA helicase 85 4e-16
CE00456 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 84 6e-16
Hs8922886 [A] KOG0332 ATP-dependent RNA helicase 84 1e-15
At3g09620 [A] KOG0334 RNA helicase 84 1e-15
SPBC12C2.06 [A] KOG0332 ATP-dependent RNA helicase 80 1e-14
Hs6005743 [A] KOG0332 ATP-dependent RNA helicase 79 2e-14
At3g53110 [A] KOG0332 ATP-dependent RNA helicase 79 2e-14
Hs21327697 [A] KOG0332 ATP-dependent RNA helicase 79 3e-14
CE18221 [A] KOG0332 ATP-dependent RNA helicase 79 3e-14
CE18220 [A] KOG0332 ATP-dependent RNA helicase 79 3e-14
CE18219 [A] KOG0332 ATP-dependent RNA helicase 79 3e-14
YGL064c [A] KOG0335 ATP-dependent RNA helicase 78 6e-14
HsM7019399 [A] KOG0332 ATP-dependent RNA helicase 78 6e-14
CE29052 [A] KOG0335 ATP-dependent RNA helicase 77 1e-13
CE29051 [A] KOG0335 ATP-dependent RNA helicase 75 3e-13
CE26264 [A] KOG0335 ATP-dependent RNA helicase 73 1e-12
SPBC776.09 [A] KOG0326 ATP-dependent RNA helicase 72 3e-12
CE03025 [A] KOG0329 ATP-dependent RNA helicase 70 1e-11
YDL084w [A] KOG0329 ATP-dependent RNA helicase 70 2e-11
Hs22070384 [A] KOG0342 ATP-dependent RNA helicase pitchoune 65 3e-10
ECU05g1270 [A] KOG0331 ATP-dependent RNA helicase 64 8e-10
7296990 [A] KOG0329 ATP-dependent RNA helicase 64 1e-09
Hs21040373 [A] KOG0329 ATP-dependent RNA helicase 60 2e-08
Hs21040371 [A] KOG0329 ATP-dependent RNA helicase 60 2e-08
CE27336 [A] KOG0334 RNA helicase 59 2e-08
ECU07g1060 [A] KOG0344 ATP-dependent RNA helicase 59 3e-08
At4g00660 [A] KOG0326 ATP-dependent RNA helicase 59 3e-08
Hs22045464 [A] KOG0343 RNA Helicase 59 4e-08
CE28485 [K] KOG4284 DEAD box protein 58 5e-08
CE01338 [J] KOG0327 Translation initiation factor 4F helicase su... 58 5e-08
CE27320 [A] KOG0335 ATP-dependent RNA helicase 58 6e-08
At1g59990 [A] KOG0333 U5 snRNP-like RNA helicase subunit 57 8e-08
Hs4758112 [A] KOG0329 ATP-dependent RNA helicase 57 1e-07
Hs22044561 [A] KOG0331 ATP-dependent RNA helicase 54 9e-07
Hs17474878 [A] KOG0333 U5 snRNP-like RNA helicase subunit 54 1e-06
Hs4826688 [J] KOG0327 Translation initiation factor 4F helicase ... 53 1e-06
Hs17475661 [J] KOG0327 Translation initiation factor 4F helicase... 53 2e-06
>YKR024c [A] KOG0348 ATP-dependent RNA helicase
Length = 742
Score = 877 bits (2265), Expect = 0.0
Identities = 447/753 (59%), Positives = 554/753 (73%), Gaps = 32/753 (4%)
Query: 6 DDDGMLLNFTTDVSDASETVSRG-KITGGKWKDRRKAKMMMEG------RKPRVRGEKRP 58
D+D MLLNFTT+ A + + K+TGG+WKDRR+ KM +EG RK G++
Sbjct: 3 DEDSMLLNFTTNEDTAGSSYKQAAKVTGGRWKDRRRMKMKLEGKTVSRKRKANTTGDEGI 62
Query: 59 LESDGAPTFEELEASSSNSTSAQAPVEPKRSRFDNSSNVEQPARVTQPLQLNSQIVSSLF 118
+ G + ++L SS S+ Q + + N+ N + + L +SQ VSSLF
Sbjct: 63 IPGRGENSIKKLHKESSYSSEEQEKYKGR-----NAHNTQG-----RTLPADSQFVSSLF 112
Query: 119 TSSRNIDTVTNSNAHDEKAEVTYSNAPLVGDTFDSFGITDTMVSHLNVKMKISKPTKIQK 178
TS+R I T N+N HDE + SNAPL GD F S G++ +VSHL KM+I KPT IQK
Sbjct: 113 TSNREITTAVNTNIHDENVAINPSNAPLKGDQFASLGVSSLLVSHLEQKMRIKKPTSIQK 172
Query: 179 LVIPPFL--QAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVTPTRE 236
IP + +ND FIHAQTGSGKTL++LLPI +IL++ ++ R SG FALV+ PTRE
Sbjct: 173 QAIPQIIGNAGKNDFFIHAQTGSGKTLSYLLPIISTILNMDTHVDRTSGAFALVIAPTRE 232
Query: 237 LANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLDHLQNTKV 296
LA+QIY V S L CCH+LVPCLLIGGERKKSEKARLRKG NFIIGTPGRVLDHLQNTKV
Sbjct: 233 LASQIYHVCSTLVSCCHYLVPCLLIGGERKKSEKARLRKGCNFIIGTPGRVLDHLQNTKV 292
Query: 297 IKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRILHVLCSA 356
IKEQL+ SLRY+VLDEGDKLMELGF+ET+ EI+ I+H I I++ +FPKLP +++H+LCSA
Sbjct: 293 IKEQLSQSLRYIVLDEGDKLMELGFDETISEIIKIVHDIPINSEKFPKLPHKLVHMLCSA 352
Query: 357 TVKGNVTKLGNVTLQNYKLISSGQKQTE--TTTVPDQLLQKIVIVPPKLRLVTLAGSLTT 414
T+ V +L NV L++YKLIS+G K+ T PDQLLQ+I IVPPKLRLVTLA +L
Sbjct: 353 TLTDGVNRLRNVALKDYKLISNGTKKDSDIVTVAPDQLLQRITIVPPKLRLVTLAATLNN 412
Query: 415 ITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILP 474
IT+ G +S RTIVF+SCSDSV+FHY+ FS DG+H+ L GD+ RLLTKGN++ P
Sbjct: 413 ITKDFIASGQQSKTLRTIVFVSCSDSVEFHYDAFSGSDGHHKNLTGDSVRLLTKGNTMFP 472
Query: 475 CFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHV 534
CF+D+ DP+V+ YKLHGSLSQQ RT+TL+HFA +N+ATKGKHLI+FCTDVASRGLDLPHV
Sbjct: 473 CFSDSRDPDVVIYKLHGSLSQQMRTSTLQHFARDNEATKGKHLIMFCTDVASRGLDLPHV 532
Query: 535 STVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEEEGYMDYIKPYHPKGWKLLTY 594
+VIE+DPPFAVEDHLHR+GRTARAG +GESLLFLLPGEEE YMDYI+PYHP GW+LL +
Sbjct: 533 GSVIELDPPFAVEDHLHRVGRTARAGEKGESLLFLLPGEEEKYMDYIQPYHPMGWELLKF 592
Query: 595 DEQVLRPAFEGLNVRRTDK---KKEDWDKH-----EAQAWDNNATTWHLNVERRVIEDSH 646
D+++L PAF+ +NV R DK K E K+ + WD NATTWHLN+ERRV+ DS
Sbjct: 593 DKEILMPAFKDVNVNRNDKFIRKDEKSSKNKDVGDKEYEWDTNATTWHLNIERRVVGDSA 652
Query: 647 FKELAVKGYMSHIRAYATHLSIEKKFFNLKCLHLGHLAKSFALRERPKSMXXXXXXXXXX 706
FK LAVKG++SH+RAYATH+S EKKFFN+K LHLGHLAKSF LRERPK+M
Sbjct: 653 FKNLAVKGFISHVRAYATHISQEKKFFNVKFLHLGHLAKSFGLRERPKAMGLQSSKDGNS 712
Query: 707 XXXXXXXPKEDSKSKMLRMAKMAMRQSNDEFNF 739
KE+SK+KM RMA+MA +Q EFN+
Sbjct: 713 EKKPT---KENSKNKMFRMARMAEKQIASEFNY 742
>SPBC21H7.04 [A] KOG0348 ATP-dependent RNA helicase
Length = 709
Score = 421 bits (1081), Expect = e-117
Identities = 279/759 (36%), Positives = 400/759 (51%), Gaps = 81/759 (10%)
Query: 7 DDGMLLNFTTDVSDASETVSRGKITGGKWKDRRKAKMMMEGRKPRVRGEKRPLESDGAPT 66
D+ +LLNF D +A + +W DR + + + +KR T
Sbjct: 3 DEPLLLNFVVD--NAQSRKPEALKSSRRWTDRARDR----------KRQKRNSNESSKST 50
Query: 67 FEELEASSSNSTSAQAPVEPKRSRFDNSSNVEQPARVTQPLQLNSQIVSSLFTS--SRNI 124
+ S +N S K + + +PA + + ++ V+SLFT S +
Sbjct: 51 VKR--NSGTNGASTDYKNSQKEKVINPVFDPRKPAHELKGNKRDNTFVTSLFTGDDSEHF 108
Query: 125 DTVTNSNAHDEKAE-----VTYSNAPLVGDTFDSFGITDTMVSHLNVKMKISKPTKIQKL 179
N D + SNAP+ F + + HLN KM IS PT IQ
Sbjct: 109 SQDVGQNLEDNQISNIGTTKEASNAPIKTTNFAGVQLDTQLADHLNNKMNISAPTAIQSC 168
Query: 180 VIPPFLQAQN-DLFIHAQTGSGKTLAFLLPIFQSILSLGQNI-TRQSGCFALVVTPTREL 237
+P L + D FI AQTGSGKTLA+LLPI Q ++ L +N+ TR SG +A+++ PTREL
Sbjct: 169 CLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTREL 228
Query: 238 ANQIYQVTSELAQ--CCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLDHLQNTK 295
QIY V ++L H++V C +IGGE+KKSEKAR+RKG N +IGTPGR+ DHL+NT+
Sbjct: 229 CQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIGTPGRLADHLENTE 288
Query: 296 VIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRILHVLCS 355
+ +R+VVLDEGD+LM++GFEETL +IL+ + + +P R + +LCS
Sbjct: 289 ALD---VSQVRWVVLDEGDRLMDMGFEETLTKILSYLESQSSIIKKDLSIPSRKVTMLCS 345
Query: 356 ATVKGNVTKLGNVTLQNYKLISSG---QKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSL 412
AT+K V +L + L++ + S + + P+QLLQ+ V+VPPKLRLV+L L
Sbjct: 346 ATMKDTVKRLSDSALKDALYLKSSIVEETNDGYSQAPEQLLQRYVVVPPKLRLVSLVALL 405
Query: 413 TTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSI 472
+ + + K I+FLSCSDSVDFH+E F + ++G+ I
Sbjct: 406 RSHVRSYKK---------IIIFLSCSDSVDFHFEAFRCAINADEMEEAVKEKPDSEGDII 456
Query: 473 --LPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLD 530
P NV Y+LHGSLSQQ RT+TL F+++ D+ G H++L CTDVA+RGLD
Sbjct: 457 SNAPALRIDGKSNV--YRLHGSLSQQIRTSTLNLFSSSEDS--GSHILL-CTDVAARGLD 511
Query: 531 LPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEEEGYMDYIK-------- 582
LP+V V++ D PF+ +D+LHRIGRTARAG G +++FLLP E E Y++ +K
Sbjct: 512 LPNVDLVVQYDAPFSTDDYLHRIGRTARAGHNGAAIMFLLPKESE-YINLLKSSVSANIL 570
Query: 583 --PYHPKGWKLLTYDEQVLRPAFEGLNVRRTDKKKEDWDKHEAQAWDNNATTWHLNVERR 640
P P G +L F D W + AT W L +ER
Sbjct: 571 EQPNGPSG---------LLSAGFSQGKTNTND-------------WQDRATEWQLELERF 608
Query: 641 VIEDSHFKELAVKGYMSHIRAYATHLSIEKKFFNLKCLHLGHLAKSFALRERPKSMXXXX 700
++E+ + +A + + S++RAYATHLS E+ FN++ LHLGH+AKSFALRE P +
Sbjct: 609 ILENEPMRNIAKRAFTSYVRAYATHLSSERSIFNMRDLHLGHIAKSFALREAPGKISGAN 668
Query: 701 XXXXXXXXXXXXXPK-EDSKSKMLRMAKMAMRQSNDEFN 738
K + SK M + AM + E N
Sbjct: 669 SSKPRKQGGSVDKGKSKSSKDIAALMHRKAMEHYSTEHN 707
>Hs17505907 [A] KOG0348 ATP-dependent RNA helicase
Length = 851
Score = 283 bits (724), Expect = 7e-76
Identities = 213/685 (31%), Positives = 337/685 (49%), Gaps = 101/685 (14%)
Query: 48 RKPRVRGEKRPLESDGAPTFEELEASSSNST------SAQAPVEPKRSRFDNSSNVEQPA 101
RK + E P + +F + +S T +AQ PK+ S ++
Sbjct: 137 RKYQASSEAPPAKRRNETSFLPAKKTSVKETQRTFKGNAQKMFSPKKHSVSTSDRNQEER 196
Query: 102 RVTQPLQLNSQIVSSLFTSSRNIDTVTNSNAHDEKAEVTYSNAPLVGDTFDSFGITDTMV 161
+ + SSLF ++ +I + + +V S A F G+ ++
Sbjct: 197 QCIK--------TSSLFKNNPDIPELHRPVVKQVQEKVFTSAA------FHELGLHPHLI 242
Query: 162 SHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNIT 221
S +N +K+S T +QK IP L+ + D + +QTGSGKTLA+ +P+ QS+ ++ I
Sbjct: 243 STINTVLKMSSMTSVQKQSIPVLLEGR-DALVRSQTGSGKTLAYCIPVVQSLQAMESKIQ 301
Query: 222 RQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFII 281
R G +ALV+ PTRELA Q + +L + ++VP +L+GGE++KSEKARLRKG N +I
Sbjct: 302 RSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILI 361
Query: 282 GTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQ 341
TPGR++DH+++TK I LR++V DE D++++LGFE+ + ILN ++
Sbjct: 362 STPGRLVDHIKSTKNIHFS---RLRWLVFDEADRILDLGFEKDITVILNAVNA------- 411
Query: 342 FPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQK-------------------- 381
+ KR +VL SAT+ VT+L +++L + IS K
Sbjct: 412 --ECQKR-QNVLLSATLTEGVTRLADISLHDPVSISVLDKSHDQLNPKDKAVQEVCPPPA 468
Query: 382 --QTETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSD 439
+ ++ +P+ L Q + +VP KLRLV LA + + + ++E K +VF S +
Sbjct: 469 GDKLDSFAIPESLKQHVTVVPSKLRLVCLAAFI--LQKCKFEEDQKM-----VVFFSSCE 521
Query: 440 SVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRT 499
V+FHY +F LL+ + + + +LHG + Q+ RT
Sbjct: 522 LVEFHYSLFLQ-------------TLLSSSGAPASGQLPSASMRLKFLRLHGGMEQEERT 568
Query: 500 ATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARA 559
A + F+ + +L CTDVA+RGLDLP V+ +++ + P + +++HRIGRTAR
Sbjct: 569 AVFQEFSHSRRG------VLLCTDVAARGLDLPQVTWIVQYNAPSSPAEYIHRIGRTARI 622
Query: 560 GCEGESLLFLLPGEEEGYMDYIKPYHPKGWKLLTYDEQVLRPAFEGL---NVRRTDKKKE 616
GC G SLL L P E E Y+ L ++ V E + R K +
Sbjct: 623 GCHGSSLLILAPSEAE----YVN-------SLASHKINVSEIKMEDILCVLTRDDCFKGK 671
Query: 617 DWDKHEAQAWDNNATTWHLNVERRVIED-SHFKELAV----KGYMSHIRAYATHLSIEKK 671
W ++ A V + V ED H E V K S I+AYAT+ K
Sbjct: 672 RWGAQKSHAVGPQEIRERATVLQTVFEDYVHSSERRVSWAKKALQSFIQAYATYPRELKH 731
Query: 672 FFNLKCLHLGHLAKSFALRERPKSM 696
F+++ LHLGH+AKSF LR+ P+++
Sbjct: 732 IFHVRSLHLGHVAKSFGLRDAPRNL 756
>7293348 [A] KOG0348 ATP-dependent RNA helicase
Length = 975
Score = 272 bits (695), Expect = 2e-72
Identities = 205/700 (29%), Positives = 332/700 (47%), Gaps = 89/700 (12%)
Query: 37 DRRKAKMMMEGRKPRVRGEKRPLESDGAPTFEELEASSSNSTSAQAPVEPKRSRFDNSSN 96
D AK G PRV+ ES + E+ + S SA + EP S +
Sbjct: 212 DEEDAKNNSGGGSPRVKPSSAVKESKKSSDIED--SGESGEESATSDEEPDESSAQSPGQ 269
Query: 97 VEQPARVTQPLQLNSQIVSSLFTSSRNIDTVTNSNAH-----DEKAEVTYSNAPLVGDTF 151
++P + + + S+ ++ I S+ ++A G
Sbjct: 270 EKEPKQTAKKPPKAEETSSTNRFRTKKIGLFDQSDVEALKQLGQRAVKPVKETIFTGSKI 329
Query: 152 DSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQ 211
+ G+ V +L + I + T +Q+ IP LQ + D+ + +QTGSGKTLA+ LP+ +
Sbjct: 330 STLGLHPHAVKNLEDLLSIRELTSVQQKTIPEVLQGK-DVLVRSQTGSGKTLAYALPLVE 388
Query: 212 SILSLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKA 271
+ I R+ G ALV+ PTREL Q Y++ +L + ++VP L+GGE +KSEKA
Sbjct: 389 LLQKQQPRIQRKDGVLALVIVPTRELVMQTYELIQKLVKPYTWIVPGSLLGGESRKSEKA 448
Query: 272 RLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNI 331
RLRKG N +IGTPGR++DHL +T K L++++LDE D+L+ELG+E +K+++
Sbjct: 449 RLRKGINILIGTPGRLVDHLLHTASFK---LTKLQFLILDEADRLLELGYERDVKQLVEA 505
Query: 332 I--HGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISS----------- 378
I + + + P+L + +L SAT+ V +L +TL+N I +
Sbjct: 506 IDKQRAECEDKELPQLQRMLL----SATLTSQVQQLAGLTLKNPLYIDNSDEAASAALKS 561
Query: 379 -------------------GQKQTETT---TVPDQLLQKIVIVPPKLRLVTLAGSLTTIT 416
G+ Q + T ++P+ L V+VPPKLRLV L+ L
Sbjct: 562 KDGYQKETIEALLEVDDGLGEYQEDVTGVLSIPENLQLSYVVVPPKLRLVALSSLLAKEV 621
Query: 417 QKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILPCF 476
K+ + IVF+S ++ V+FH+++ + V D KG+S
Sbjct: 622 DASPKQ------FKAIVFMSTTEMVNFHHDMLNEALTRR---VLDEEDEQEKGDS----D 668
Query: 477 NDTDDP---NVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPH 533
+D D P + +KLHGS++Q R + F D +L TDV RG+D+P
Sbjct: 669 DDGDIPLLQGLRFFKLHGSMTQTERQGVFRGF---RDCAS---CVLLATDVVGRGIDVPD 722
Query: 534 VSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEEEGYMDYIKPYHPKGWKLLT 593
+ V++ PP D +HR+GRTARAG +G ++LFL P E + +++ K ++
Sbjct: 723 IKLVVQYTPPQTTADFVHRVGRTARAGRKGRAVLFLTPSEAQ----FVRHLEKKRIRIQQ 778
Query: 594 YDEQVLRPAFEGLNVRRTDKKKEDWDKHEAQAWDNNATTWHLNVERRVIEDSHFKELAVK 653
D +T K+D EA+ A+ + + +D + + K
Sbjct: 779 GDMYA---------YLQTLLPKDD----EARTVQEAASNLQHKFQTLLEDDRELHDKSCK 825
Query: 654 GYMSHIRAYATHLSIEKKFFNLKCLHLGHLAKSFALRERP 693
++S ++ Y+T K FN++ H+GH AKSFAL+E P
Sbjct: 826 AFVSWMKFYSTFPKELKPIFNVRIAHMGHFAKSFALKEAP 865
>At2g40700 [A] KOG0348 ATP-dependent RNA helicase
Length = 609
Score = 269 bits (688), Expect = 1e-71
Identities = 186/584 (31%), Positives = 283/584 (47%), Gaps = 86/584 (14%)
Query: 150 TFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPI 209
+F S G+ + L +M PT +Q IP L + D+ ++A TG+GKT+A+L P+
Sbjct: 30 SFSSLGLDTKLSDQLKERMGFEAPTLVQAQAIPVILSGR-DVLVNAPTGTGKTIAYLAPL 88
Query: 210 FQSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSE 269
+ + R G FALV+ PTREL Q+Y+ +L H++VP ++GGE+K E
Sbjct: 89 IHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGEKKAKE 148
Query: 270 KARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEIL 329
KARLRKG + +I TPGR+LDHL+NT + +LR+V+ DE D ++ELG+ + +++I+
Sbjct: 149 KARLRKGISILIATPGRLLDHLKNTASFVHK---NLRWVIFDEADSILELGYGKEIEQII 205
Query: 330 NII-HGIDIDTHQFPKLPKRI--LHVLCSATVKGNVTKLGNVTLQNYKLI---------- 376
++ G + + +PK I ++L SAT+ V L ++L + +I
Sbjct: 206 KLLGSGQNEQGEEDDIVPKGIQKQNLLLSATLNDKVNDLAKLSLDDPVMIGLDNTKLQQN 265
Query: 377 ---------------------SSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTI 415
S +E +P QL+Q+ + VP RLV L L +
Sbjct: 266 LSIESPAAPDSDAEDMVIHVNKSANPLSEDYGIPSQLVQRYLRVPCGARLVALLSVLKNL 325
Query: 416 TQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHD--GNHRGLVGDTARLLTKGNSIL 473
++ + + +VF S D+VDFHY + S N T L K +
Sbjct: 326 FEREASQ-------KVVVFFSTRDAVDFHYSLLSEFQWPPNSETEEEGTKELFLKCKT-- 376
Query: 474 PCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPH 533
++LHGS+ Q+ R + F T K +L TDVA+RGLD P
Sbjct: 377 -------------FRLHGSMEQEDRRSAFGTFKTE------KQAVLLSTDVAARGLDFPK 417
Query: 534 VSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEEEGYMDYIKPYHPKGWKLLT 593
V +I+ D P +++HR+GRTAR G +GE+LLFL P E +DY+K G L
Sbjct: 418 VRCIIQYDCPGEATEYVHRVGRTARIGEKGEALLFLQPIE----IDYLKELKKHGASLTE 473
Query: 594 YDEQVLRPAFEGLNVRRTDKKKEDWDKHEAQAWDNNATTWHLNVERRV----IEDSHFKE 649
Y + F KK + H W ++++R + + K
Sbjct: 474 YPLMKVLDKFPIPGNMPRIKKVLSLESH----------PWVISLQRALESLTYAEPKMKS 523
Query: 650 LAVKGYMSHIRAYATHLSIEKKFFNLKCLHLGHLAKSFALRERP 693
LA ++S +R YA H K F +K LHLGH+AKSFALRE+P
Sbjct: 524 LAKNAFVSWVRGYAAHKGELKSIFVVKKLHLGHVAKSFALREQP 567
>At5g65900 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 633
Score = 211 bits (537), Expect = 3e-54
Identities = 176/577 (30%), Positives = 269/577 (46%), Gaps = 109/577 (18%)
Query: 119 TSSRNIDTVTNSNAHDEKAEVTYSNAPLVGDTFDSFGITDTMVSHLNVKMKISKPTKIQK 178
T +++ + ++K E T + + TF+S ++D + +M ++ T+IQ
Sbjct: 127 TEAKSEEEEVEDKEEEKKLEET---SIMTNKTFESLSLSDNTYKSIK-EMGFARMTQIQA 182
Query: 179 LVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVTPTRELA 238
IPP + + D+ A+TGSGKTLAFL+P + + + T ++G LV+ PTRELA
Sbjct: 183 KAIPPLMMGE-DVLGAARTGSGKTLAFLIPAVELLYRV--KFTPRNGTGVLVICPTRELA 239
Query: 239 NQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLDHLQNTKVIK 298
Q Y V EL + H +IGGE++K+E L KG N ++ TPGR+LDHL+NT
Sbjct: 240 IQSYGVAKELLKY-HSQTVGKVIGGEKRKTEAEILAKGVNLLVATPGRLLDHLENTNGF- 297
Query: 299 EQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRILHVLCSATV 358
+ +L+++V+DE D+++E FEE LK+ILN+ LPK L SAT
Sbjct: 298 --IFKNLKFLVMDEADRILEQNFEEDLKKILNL-------------LPKTRQTSLFSATQ 342
Query: 359 KGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQK 418
V L V+L + I + + E T + L Q +VP +RL+ L L
Sbjct: 343 SAKVEDLARVSLTSPVYIDVDEGRKEVTN--EGLEQGYCVVPSAMRLLFLLTFLKRF--- 397
Query: 419 HYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFND 478
+G K + +VF S S FH E+F R + D
Sbjct: 398 ---QGKK----KIMVFFSTCKSTKFHAELF-------RYIKFD----------------- 426
Query: 479 TDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVI 538
C ++ G + Q RT T F K + IL CT+VA+RGLD PHV ++
Sbjct: 427 -------CLEIRGGIDQNKRTPTFLQF------IKAETGILLCTNVAARGLDFPHVDWIV 473
Query: 539 EMDPPFAVEDHLHRIGRTARA-GCEGESLLFLLPGEEEGYMDYIKPYHPKGWKLLTYDEQ 597
+ DPP D++HR+GRTAR G +G++LL L P +E ++ Y+K
Sbjct: 474 QYDPPDNPTDYIHRVGRTARGEGAKGKALLVLTP-QELKFIQYLK--------------- 517
Query: 598 VLRPAFEGLNVRRTDKKKEDWDKHEAQAWDNNATTWHLNVERRVIEDSHFKELAVKGYMS 657
K ++HE + + VE + E+ KE A + Y +
Sbjct: 518 ---------------AAKIPVEEHEFE--EKKLLDVKPFVENLISENYALKESAKEAYKT 560
Query: 658 HIRAYATHLSIEKKFFNLKCLHLGHLAKSFALRERPK 694
+I Y +H K FN+ L+L +A SF + PK
Sbjct: 561 YISGYDSHSM--KDVFNVHQLNLTEVATSFGFSDPPK 595
>YMR290c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 505
Score = 204 bits (519), Expect = 4e-52
Identities = 172/568 (30%), Positives = 269/568 (47%), Gaps = 111/568 (19%)
Query: 134 DEKAEVTYSNAPLVGDT------FDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQA 187
DEK+ +NA G+ F+ ++ + + KM + T +Q IPP L A
Sbjct: 21 DEKSTSKQNNAAPEGEQTTCVEKFEELKLSQPTLKAIE-KMGFTTMTSVQARTIPPLL-A 78
Query: 188 QNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSE 247
D+ A+TGSGKTLAFL+P + + SL ++G +V+TPTRELA QI+ V E
Sbjct: 79 GRDVLGAAKTGSGKTLAFLIPAIELLHSL--KFKPRNGTGIIVITPTRELALQIFGVARE 136
Query: 248 LAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRY 307
L + H ++IGG ++ E +L KG N +I TPGR+LDHLQNTK + +L+
Sbjct: 137 LMEF-HSQTFGIVIGGANRRQEAEKLMKGVNMLIATPGRLLDHLQNTKGF---VFKNLKA 192
Query: 308 VVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGN 367
+++DE D+++E+GFE+ +++I+ I+ D + +L SAT V L
Sbjct: 193 LIIDEADRILEIGFEDEMRQIIKILPNEDRQS------------MLFSATQTTKVEDLAR 240
Query: 368 VTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSD 427
++L+ L + +T+ +T D L Q V+ R + L L ++
Sbjct: 241 ISLRPGPLFINVVPETDNSTA-DGLEQGYVVCDSDKRFLLLFSFL-----------KRNQ 288
Query: 428 VTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICY 487
+ IVFLS +SV ++ E+ + D LP
Sbjct: 289 KKKIIVFLSSCNSVKYYAELLNYID--------------------LPVL----------- 317
Query: 488 KLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVE 547
+LHG QQ RT T F +A +G IL CTDVA+RGLD+P V +I+ DPP
Sbjct: 318 ELHGKQKQQKRTNTFFEFC---NAERG---ILICTDVAARGLDIPAVDWIIQFDPPDDPR 371
Query: 548 DHLHRIGRTAR-AGCEGESLLFLLPGEEEGYMDYIKPYHPKGWKLLTYDEQVLRPAFEGL 606
D++HR+GRTAR +G+SL+FL P E G++ Y+K
Sbjct: 372 DYIHRVGRTARGTKGKGKSLMFLTP-NELGFLRYLK------------------------ 406
Query: 607 NVRRTDKKKEDWDKHEAQAWDNNATTWHLNVERRVIEDSHFKELAVKGYMSHIRAYATHL 666
K +++E +N +E+ + + + + A GY S+++AYA+H
Sbjct: 407 ------ASKVPLNEYEFP--ENKIANVQSQLEKLIKSNYYLHQTAKDGYRSYLQAYASHS 458
Query: 667 SIEKKFFNLKCLHLGHLAKSFALRERPK 694
K + + L L +AKS+ PK
Sbjct: 459 L--KTVYQIDKLDLAKVAKSYGFPVPPK 484
>7300808 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 663
Score = 204 bits (518), Expect = 5e-52
Identities = 165/528 (31%), Positives = 257/528 (48%), Gaps = 105/528 (19%)
Query: 167 KMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGC 226
+M ++ T+IQ + P L+ + DL AQTGSGKTLAFL+P + I L ++G
Sbjct: 187 EMGFTEMTEIQSKSLTPLLKGR-DLVGAAQTGSGKTLAFLIPAVELINKL--RFMPRNGT 243
Query: 227 FALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGR 286
++++PTREL+ Q + V EL H L++GG ++ E +L KG N ++ TPGR
Sbjct: 244 GVIIISPTRELSMQTFGVLKELMAHHHHTYG-LVMGGSNRQVESEKLGKGINILVATPGR 302
Query: 287 VLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLP 346
+LDHLQN+ + L +L+ +++DE D+++E+GFEE LK+I+N+ LP
Sbjct: 303 LLDHLQNS---PDFLYKNLQCLIIDEVDRILEIGFEEELKQIINL-------------LP 346
Query: 347 KRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLV 406
KR +L SAT + L + L++ + +T TV D L Q ++ P + RL+
Sbjct: 347 KRRQTMLFSATQTARIEALSKLALKSEPIYVGVHDNQDTATV-DGLEQGYIVCPSEKRLL 405
Query: 407 TLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLL 466
L T +K+ K+ + +VF S SV +H+E+F+ D
Sbjct: 406 V----LFTFLKKNRKK-------KVMVFFSSCMSVKYHHELFNYID-------------- 440
Query: 467 TKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVAS 526
LP + +HG Q RT T F +A G IL CTDVA+
Sbjct: 441 ------LPVTS-----------IHGKQKQTKRTTTFFQFC---NAESG---ILLCTDVAA 477
Query: 527 RGLDLPHVSTVIEMDPPFAVEDHLHRIGRTAR-AGCEGESLLFLLPGEEEGYMDYIKPYH 585
RGLD+P V +++ DPP +++HR+GRTAR +G G +LL + P EE G++ Y+K
Sbjct: 478 RGLDIPQVDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLLMRP-EELGFLRYLKA-- 534
Query: 586 PKGWKLLTYDEQVLRPAFEGLNVRRTDKKKEDWDKHEAQAWDNNATTWHLNVERRVIEDS 645
+V FE W K L +E+ + ++
Sbjct: 535 ----------AKVPLNEFE-----------FSWQK---------IADIQLQLEKLIAKNY 564
Query: 646 HFKELAVKGYMSHIRAYATHLSIEKKFFNLKCLHLGHLAKSFALRERP 693
+ A + + S++RAY +H K+ FN+ L L +AKSF P
Sbjct: 565 FLNQSAKEAFKSYVRAYDSHQL--KQIFNVNTLDLQAVAKSFGFLVPP 610
>At3g18600 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 568
Score = 202 bits (514), Expect = 2e-51
Identities = 176/565 (31%), Positives = 258/565 (45%), Gaps = 107/565 (18%)
Query: 131 NAHDEKAEVTYSNAPLVGDTFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQND 190
+ DEK V + TFDS +++ S +M T+IQ I P L+ + D
Sbjct: 71 DGEDEKNIVIVGKGIMTNVTFDSLDLSE-QTSIAIKEMGFQYMTQIQAGSIQPLLEGK-D 128
Query: 191 LFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQ 250
+ A+TGSGKTLAFL+P + + + + ++G +V+ PTRELA Q V EL +
Sbjct: 129 VLGAARTGSGKTLAFLIPAVELLFK--ERFSPRNGTGVIVICPTRELAIQTKNVAEELLK 186
Query: 251 CCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVL 310
H ++IGG ++SE R+ G+N +I TPGR+LDHLQNTK + L+ +V+
Sbjct: 187 H-HSQTVSMVIGGNNRRSEAQRIASGSNLVIATPGRLLDHLQNTKAF---IYKHLKCLVI 242
Query: 311 DEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTL 370
DE D+++E FEE + +IL I LPK L SAT V L V+L
Sbjct: 243 DEADRILEENFEEDMNKILKI-------------LPKTRQTALFSATQTSKVKDLARVSL 289
Query: 371 QNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTR 430
+ + + + T + L Q +VP K RL+ L L K +
Sbjct: 290 TSPVHVDVDDGRRKVTN--EGLEQGYCVVPSKQRLILLISFLKKNLNK-----------K 336
Query: 431 TIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLH 490
+VF S SV FH E+ D D D +H
Sbjct: 337 IMVFFSTCKSVQFHTEIMKISD------------------------VDVSD-------IH 365
Query: 491 GSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHL 550
G + Q RT T F K K IL CTDVA+RGLD+P V +I+ DPP +++
Sbjct: 366 GGMDQNRRTKTFFDF------MKAKKGILLCTDVAARGLDIPSVDWIIQYDPPDKPTEYI 419
Query: 551 HRIGRTARA-GCEGESLLFLLPGEEEGYMDYIKPYHPKGWKLLTYDEQVLRPAFEGLNVR 609
HR+GRTAR G +G++LL L+P EE ++ Y+K K L ++E+ L NV+
Sbjct: 420 HRVGRTARGEGAKGKALLVLIP-EELQFIRYLKAAKVP-VKELEFNEKRLS------NVQ 471
Query: 610 RTDKKKEDWDKHEAQAWDNNATTWHLNVERRVIEDSHFKELAVKGYMSHIRAYATHLSIE 669
+E+ V +D + +LA Y +++ AY +H
Sbjct: 472 SA-------------------------LEKCVAKDYNLNKLAKDAYRAYLSAYNSHSL-- 504
Query: 670 KKFFNLKCLHLGHLAKSFALRERPK 694
K FN+ L L +A+SF PK
Sbjct: 505 KDIFNVHRLDLLAVAESFCFSSPPK 529
>SPAC1F7.02c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 578
Score = 199 bits (507), Expect = 1e-50
Identities = 188/634 (29%), Positives = 289/634 (44%), Gaps = 127/634 (20%)
Query: 82 APVEPKRSRFDNSSNVEQPARVTQPLQLNSQIVSSL-------FTSSRNIDTVTNSNAHD 134
A E KR + S N E + +PL+ + +I L N D N++
Sbjct: 2 AKSELKRKKHQ-SGNEEVKEKRQKPLKNDKKIAEELPQDEDDYEQEEENEDADQNTSVES 60
Query: 135 EKAEVTYSNAPL---------VGDTFDSFGITDTMVSHLNVKMKISKP-----TKIQKLV 180
E E+ N T D +D +S N++ I + T+IQK
Sbjct: 61 ESEELDNENEDERVQKSVNLNASSTSDIEKFSDLQLSE-NIQKAIKEMGFETMTEIQKRS 119
Query: 181 IPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVTPTRELANQ 240
IPP L A D+ A+TGSGKTLAFL+P + + +L ++G ++++PTRELA Q
Sbjct: 120 IPPLL-AGRDVLGAAKTGSGKTLAFLIPTIEMLYAL--KFKPRNGTGVIIISPTRELALQ 176
Query: 241 IYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQ 300
I+ V EL + H ++IGG +++E +L KG N ++ TPGR+LDHLQNTK
Sbjct: 177 IFGVAKELLKYHHQTFG-IVIGGANRRAEADKLVKGVNLLVATPGRLLDHLQNTKGF--- 232
Query: 301 LAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRILHVLCSATVKG 360
+ +LR +V+DE D+++E+GFE+ +++I+ I+ + T +L SAT
Sbjct: 233 VFRNLRSLVIDEADRILEIGFEDEMRQIMKILPSENRQT------------LLFSATQTT 280
Query: 361 NVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHY 420
V L ++L+ L + T+TV + L Q V+V R + L L +K
Sbjct: 281 KVEDLARISLKPGPLYVNVDSGKPTSTV-EGLEQGYVVVDSDKRFLLLFSFLKRNLKK-- 337
Query: 421 KEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTD 480
+ IVF+S SV + E+ + D LP +
Sbjct: 338 ---------KVIVFMSSCASVKYMAELLNYID--------------------LPVLD--- 365
Query: 481 DPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEM 540
LHG QQ RT T F +A KG IL CT+VA+RGLD+P V +++
Sbjct: 366 --------LHGKQKQQRRTNTFFEFC---NAEKG---ILLCTNVAARGLDIPAVDWIVQY 411
Query: 541 DPPFAVEDHLHRIGRTAR-AGCEGESLLFLLPGEEEGYMDYIKPYHPKGWKLLTYDEQVL 599
DPP D++HR+GRTAR G+SL+FL P E G++ Y+K
Sbjct: 412 DPPDDPRDYIHRVGRTARGTKGTGKSLMFLAP-SELGFLRYLK----------------- 453
Query: 600 RPAFEGLNVRRTDKKKEDWDKHEAQAWDNNATTWHLNVERRVIEDSHFKELAVKGYMSHI 659
K ++ E A N +E+ V ++ + ++ A GY S++
Sbjct: 454 -------------TAKVSLNEFEFPA--NKVANVQSQLEKLVSKNYYLQQSAKDGYRSYL 498
Query: 660 RAYATHLSIEKKFFNLKCLHLGHLAKSFALRERP 693
+AYA++ K F++ L L +AKSF P
Sbjct: 499 QAYASYSL--KSIFDINKLDLAKVAKSFGFAHPP 530
>Hs13787206 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 670
Score = 197 bits (502), Expect = 4e-50
Identities = 181/629 (28%), Positives = 284/629 (44%), Gaps = 112/629 (17%)
Query: 71 EASSSNSTSAQAPVEPKRSRFDNSSNVEQPARVTQPLQLNSQIVSSLFTSSRNIDTVTNS 130
EA+ +S S + K+ + N + + T+ + + S T+ + V
Sbjct: 97 EAAMQSSNSESKKKKKKKRKMVNDAEPDTKKAKTENKGKSEE--ESAETTKETENNVEKP 154
Query: 131 NAHDEKAEVTYSNAPLVGDTFD-SFGITDTMVSHLNVK----MKISKPTKIQKLVIPPFL 185
+ ++++EV L G D SF +V+ +K M + T+IQ I P L
Sbjct: 155 DNDEDESEVPSLPLGLTGAFEDTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLL 214
Query: 186 QAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVTPTRELANQIYQVT 245
+ + DL A+TGSGKTLAFL+P + I+ L ++G L+++PTRELA Q + V
Sbjct: 215 EGR-DLLAAAKTGSGKTLAFLIPAVELIVKL--RFMTRNGTGVLILSPTRELAMQTFGVL 271
Query: 246 SELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSL 305
EL H L++GG + +E +L G N I+ TPGR+LDH+QNT + +L
Sbjct: 272 KEL-MTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGF---MYKNL 327
Query: 306 RYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKL 365
+ +V+DE D+++++GFEE LK+I+ + LP R +L SAT V L
Sbjct: 328 QCLVIDEADRILDVGFEEELKQIIKL-------------LPTRRQTMLFSATQTRKVEDL 374
Query: 366 GNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSK 425
++L+ L TV D L Q V+ P + R + L T +K+ K+
Sbjct: 375 ARISLKKEPLYVGVDDDKANATV-DGLEQGYVVCPSEKRFLL----LFTFLKKNRKK--- 426
Query: 426 SDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVI 485
+ +VF S SV +HYE+ + D LP
Sbjct: 427 ----KLMVFFSSCMSVKYHYELLNYID--------------------LPVL--------- 453
Query: 486 CYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFA 545
+HG Q RT T F + T L CTDVA+RGLD+P V +++ DPP
Sbjct: 454 --AIHGKQKQNKRTTTFFQFCNADSGT------LLCTDVAARGLDIPEVDWIVQYDPPDD 505
Query: 546 VEDHLHRIGRTARA-GCEGESLLFLLPGEEEGYMDYIKPYHPKGWKLLTYDEQVLRPAFE 604
++++HR+GRTAR G +LL L P EE G++ Y+K +V F+
Sbjct: 506 PKEYIHRVGRTARGLNGRGHALLILRP-EELGFLRYLK------------QSKVPLSEFD 552
Query: 605 GLNVRRTDKKKEDWDKHEAQAWDNNATTWHLNVERRVIEDSHFKELAVKGYMSHIRAYAT 664
W K + +E+ + ++ + A + Y S+IRAY +
Sbjct: 553 -----------FSWSK---------ISDIQSQLEKLIEKNYFLHKSAQEAYKSYIRAYDS 592
Query: 665 HLSIEKKFFNLKCLHLGHLAKSFALRERP 693
H K+ FN+ L+L +A SF + P
Sbjct: 593 HSL--KQIFNVNNLNLPQVALSFGFKVPP 619
>Hs20336298 [A] KOG0348 ATP-dependent RNA helicase
Length = 585
Score = 193 bits (491), Expect = 7e-49
Identities = 148/503 (29%), Positives = 244/503 (48%), Gaps = 82/503 (16%)
Query: 48 RKPRVRGEKRPLESDGAPTFEELEASSSNST------SAQAPVEPKRSRFDNSSNVEQPA 101
RK + E P + +F + +S T +AQ PK+ S ++
Sbjct: 137 RKYQASSEAPPAKRRNETSFLPAKKTSVKETQRTFKGNAQKMFSPKKHSVSTSDRNQEER 196
Query: 102 RVTQPLQLNSQIVSSLFTSSRNIDTVTNSNAHDEKAEVTYSNAPLVGDTFDSFGITDTMV 161
+ + SSLF ++ +I + + +V S A F G+ ++
Sbjct: 197 QCIK--------TSSLFKNNPDIPELHRPVVKQVQEKVFTSAA------FHELGLHPHLI 242
Query: 162 SHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNIT 221
S +N +K+S T +QK IP L+ + D + +QTGSGKTLA+ +P+ QS+ ++ I
Sbjct: 243 STINTVLKMSSMTSVQKQSIPVLLEGR-DALVRSQTGSGKTLAYCIPVVQSLQAMESKIQ 301
Query: 222 RQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFII 281
R G +ALV+ PTRELA Q + +L + ++VP +L+GGE++KSEKARLRKG N +I
Sbjct: 302 RSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILI 361
Query: 282 GTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQ 341
TPGR++DH+++TK I LR++V DE D++++LGFE+ + ILN ++
Sbjct: 362 STPGRLVDHIKSTKNIH---FSRLRWLVFDEADRILDLGFEKDITVILNAVNA------- 411
Query: 342 FPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQK-------------------- 381
+ KR +VL SAT+ VT+L +++L + IS K
Sbjct: 412 --ECQKR-QNVLLSATLTEGVTRLADISLHDPVSISVLDKSHDQLNPKDKAVQEVCPPPA 468
Query: 382 --QTETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSD 439
+ ++ +P+ L Q + +VP KLRLV LA + + + ++E K +VF S +
Sbjct: 469 GDKLDSFAIPESLKQHVTVVPSKLRLVCLAAFI--LQKCKFEEDQK-----MVVFFSSCE 521
Query: 440 SVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRT 499
V+FHY +F LL+ + + + +LHG + Q+ RT
Sbjct: 522 LVEFHYSLF-------------LQTLLSSSGAPASGQLPSASMRLKFLRLHGGMEQEERT 568
Query: 500 ATLKHFATNNDATKGKHLILFCT 522
A + F + + +L CT
Sbjct: 569 AVFQEF------SHSRRGVLLCT 585
>SPAC1093.05 [A] KOG0343 RNA Helicase
Length = 735
Score = 193 bits (490), Expect = 9e-49
Identities = 173/564 (30%), Positives = 257/564 (44%), Gaps = 108/564 (19%)
Query: 134 DEKAEVTYSNAPLVGDTFDSFG---ITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQND 190
+E+ E S + +T D F +T S L I+ T+IQK IP L+ + D
Sbjct: 21 EEEIEELNSQIEALSETVDHFAELPLTQPTKSALKNAHFITL-TEIQKQCIPSALKGR-D 78
Query: 191 LFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQ 250
+ A+TGSGKTLAF++P+ +++ + T G ALV++PTRELA Q ++ ++ +
Sbjct: 79 ILGAAKTGSGKTLAFIVPLIENLYR--KKWTSLDGLGALVISPTRELAIQTFETLVKIGR 136
Query: 251 CCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVL 310
H L+IGG K EK RL + N ++ TPGR+L H+ L+ ++L
Sbjct: 137 L-HSFSAGLIIGGNNYKEEKERLSR-MNILVCTPGRLLQHIDQAVNFDTS---GLQMLIL 191
Query: 311 DEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTL 370
DE D+++++GF TL I++ LP +L SAT +V L ++L
Sbjct: 192 DEADRILDMGFRTTLDAIVS-------------SLPVHRQTMLFSATQTKSVKDLARLSL 238
Query: 371 QNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTR 430
QN IS + T +T P L Q + VP +L L G + T H K +
Sbjct: 239 QNPDFISVHENDTSST--PSNLNQFYLTVPLTEKLDILFGFIRT----HLK-------FK 285
Query: 431 TIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLH 490
TIVFLS V F YE F R + G S+L LH
Sbjct: 286 TIVFLSSCKQVRFVYETF---------------RRMRPGISLL--------------HLH 316
Query: 491 GSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHL 550
G Q TRT F T +H++LFCTD+ +RGLD P V VI++D P V+ ++
Sbjct: 317 GKQKQTTRTEVTAKF------TSSRHVVLFCTDIVARGLDFPAVDWVIQLDAPEDVDTYI 370
Query: 551 HRIGRTARAGCEGESLLFLLPGEEEGYMDYIKPYHPKGWKLLTYDEQVLRPAFEGLNVRR 610
HR+GRTAR G +LL LLP EE ++K K + A E +NV+
Sbjct: 371 HRVGRTARYNRSGNALLLLLPSEEA----FLKRLESK------------KIAVERINVK- 413
Query: 611 TDKKKEDWDKHEAQAWDNNATTWHLNVERRVIEDSHFKELAVKGYMSHIRAYATHLSIEK 670
D T+ ++ +D+ K + K ++S++R + +L +K
Sbjct: 414 ----------------DGKKTSIRNQLQNLCFKDNDIKYIGQKAFISYLR--SIYLQKDK 455
Query: 671 KFFNLKCLHLGHLAKSFALRERPK 694
F L L + A S L PK
Sbjct: 456 DVFQLDKLPVEAFADSLGLPGTPK 479
>CE26853 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 544
Score = 191 bits (484), Expect = 5e-48
Identities = 156/521 (29%), Positives = 246/521 (46%), Gaps = 105/521 (20%)
Query: 174 TKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVTP 233
T+IQ I P L+ + D+ A+TGSGKTLAFLLP + + L N + +G ++V+P
Sbjct: 92 TEIQAKSIDPLLEGK-DVLASAKTGSGKTLAFLLPAIELLHKL--NWKQHNGTGVIIVSP 148
Query: 234 TRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLDHLQN 293
TREL+ Q Y V SEL + + L L++GG + +EK +L KG + ++ TPGR+LDHLQN
Sbjct: 149 TRELSMQTYGVLSELLEGSN-LTYGLVMGGSNRSAEKDKLAKGVSILVATPGRLLDHLQN 207
Query: 294 TKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRILHVL 353
T L +++ +++DE D+++++GFE ++++L LPK+ +L
Sbjct: 208 T---DNFLVRNMKCLIIDEADRILDIGFEIEMQQVLR-------------HLPKQRQSML 251
Query: 354 CSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSLT 413
SAT V +L + L + + S ++ E TV + L Q ++ P RL+ L L
Sbjct: 252 FSATHSPKVDELVKLALHSNPVRVSVHEKAEEATV-EGLQQGYIVAPSDKRLLLLFTFL- 309
Query: 414 TITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSIL 473
K+ + +VF S +SV FH+E+ + D
Sbjct: 310 ----------KKNKTKKVMVFFSSCNSVKFHHELLNYID--------------------- 338
Query: 474 PCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPH 533
+ C +HG QQ RT T F A G IL CTDVA+RGLD+P
Sbjct: 339 ----------IPCMSIHGKQKQQKRTTTFFQFC---QAETG---ILLCTDVAARGLDIPA 382
Query: 534 VSTVIEMDPPFAVEDHLHRIGRTAR-AGCEGESLLFLLPGEEEGYMDYIKPYHPKGWKLL 592
V +++ DP +++HR+GRTAR G++LL L P EE G++ Y+K
Sbjct: 383 VDWIVQYDPTDEPREYIHRVGRTARGTNGSGKALLVLRP-EELGFLRYLKA--------- 432
Query: 593 TYDEQVLRPAFEGLNVRRTDKKKEDWDKHEAQAWDNNATTWHLNVERRVIEDSHFKELAV 652
+V FE W K +E + ++ + + A
Sbjct: 433 ---AKVTLNEFE-----------FSWSK---------VANIQSQLENLISKNYYLNKSAK 469
Query: 653 KGYMSHIRAYATHLSIEKKFFNLKCLHLGHLAKSFALRERP 693
+ Y ++RAY +H K F++ + L ++KSF P
Sbjct: 470 EAYKCYLRAYDSHSL--KDIFDVTNMDLTAVSKSFGFSVPP 508
>YJL033w [A] KOG0343 RNA Helicase
Length = 770
Score = 180 bits (456), Expect = 8e-45
Identities = 160/549 (29%), Positives = 252/549 (45%), Gaps = 108/549 (19%)
Query: 151 FDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIF 210
F I+D + L I K T+IQ IP LQ +D+ A+TGSGKTLAFL+P+
Sbjct: 43 FKDLPISDPTLKGLRESSFI-KLTEIQADSIPVSLQG-HDVLAAAKTGSGKTLAFLVPVI 100
Query: 211 QSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEK 270
+ + + T G AL+++PTRELA QIY+V +++ F L+IGG+ K E
Sbjct: 101 EKLYR--EKWTEFDGLGALIISPTRELAMQIYEVLTKIGSHTSFSAG-LVIGGKDVKFEL 157
Query: 271 ARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILN 330
R+ + N +IGTPGR+L HL + +L+ +VLDE D+ +++GF++TL I++
Sbjct: 158 ERISR-INILIGTPGRILQHLDQAVGLNTS---NLQMLVLDEADRCLDMGFKKTLDAIVS 213
Query: 331 IIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISS-----GQKQTET 385
+ P R +L SAT +V L ++L +YK + + G E
Sbjct: 214 TLS------------PSRQT-LLFSATQSQSVADLARLSLTDYKTVGTHDVMDGSVNKEA 260
Query: 386 TTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHY 445
+T P+ L Q + VP L L + + H K + IVFLS S V F Y
Sbjct: 261 ST-PETLQQFYIEVP----LADKLDILFSFIKSHLK-------CKMIVFLSSSKQVHFVY 308
Query: 446 EVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHF 505
E F P + LHG Q+ RT TL F
Sbjct: 309 ETFRKMQ-----------------------------PGISLMHLHGRQKQRARTETLDKF 339
Query: 506 ATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGES 565
+ + + LF TDV +RG+D P V V+++D P V+ ++HR+GR AR G +G+S
Sbjct: 340 ------NRAQQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRVGRCARYGKKGKS 393
Query: 566 LLFLLPGEEEGYMDYIKPYHPKGWKLLTYDEQVLRPAFEGLNVRRTDKKKEDWDKHEAQA 625
L+ L P E+E ++ + + + + P LN++++ KK
Sbjct: 394 LIMLTPQEQEAFLKRL-------------NARKIEPG--KLNIKQSKKK----------- 427
Query: 626 WDNNATTWHLNVERRVIEDSHFKELAVKGYMSHIRAYATHLSIEKKFFNLKCLHLGHLAK 685
+ ++ + +D K L K ++S++R + ++ +K+ F L A
Sbjct: 428 ------SIKPQLQSLLFKDPELKYLGQKAFISYVR--SIYVQKDKQVFKFDELPTEEFAY 479
Query: 686 SFALRERPK 694
S L PK
Sbjct: 480 SLGLPGAPK 488
>Hs20149629 [A] KOG0330 ATP-dependent RNA helicase
Length = 455
Score = 174 bits (440), Expect = 6e-43
Identities = 160/527 (30%), Positives = 243/527 (45%), Gaps = 102/527 (19%)
Query: 132 AHDEKAEVTYSNAPLVGD----TFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQA 187
A +E T ++ P+V + TF G+TD + + ++ +KPTKIQ IP LQ
Sbjct: 3 APEEHDSPTEASQPIVEEEETKTFKDLGVTDVLCEACD-QLGWTKPTKIQIEAIPLALQG 61
Query: 188 QNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSE 247
+ D+ A+TGSGKT AF LPI ++L Q + FALV+TPTRELA QI +
Sbjct: 62 R-DIIGLAETGSGKTGAFALPILNALLETPQRL------FALVLTPTRELAFQISEQFEA 114
Query: 248 LAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRY 307
L + +++GG S+ L K + II TPGR++DHL+NTK + +L+Y
Sbjct: 115 LGSSIG-VQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLR---ALKY 170
Query: 308 VVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGN 367
+V+DE D+++ + FE + +IL +I P+ L SAT+ V KL
Sbjct: 171 LVMDEADRILNMDFETEVDKILKVI-------------PRDRKTFLFSATMTKKVQKLQR 217
Query: 368 VTLQN-YKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKS 426
L+N K S + QT ++L Q + +P K + L L + +
Sbjct: 218 AALKNPVKCAVSSKYQT-----VEKLQQYYIFIPSKFKDTYLVYILNELAGNSF------ 266
Query: 427 DVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTK-GNSILPCFNDTDDPNVI 485
++F S ++ TA LL G + +P
Sbjct: 267 -----MIFCSTCNNTQ------------------RTALLLRNLGFTAIP----------- 292
Query: 486 CYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFA 545
LHG +SQ R +L F IL TDVASRGLD+PHV V+ D P
Sbjct: 293 ---LHGQMSQSKRLGSLNKFKAK------ARSILLATDVASRGLDIPHVDVVVNFDIPTH 343
Query: 546 VEDHLHRIGRTARAGCEGESLLFLLPGEEEGYMDYIKPYHPKGWKL---LTYDEQVL--- 599
+D++HR+GRTARAG G+++ F+ + E + + H G KL T D++V+
Sbjct: 344 SKDYIHRVGRTARAGRSGKAITFVTQYDVELFQ---RIEHLIGKKLPGFPTQDDEVMMLT 400
Query: 600 -----RPAFEGLNVRRTDKKKEDWDKHEAQAWDNNATTWHLNVERRV 641
F + +R +KK+ + A DN+ T + V +V
Sbjct: 401 ERVAEAQRFARMELREHGEKKK---RSREDAGDNDDTEGAIGVRNKV 444
>SPBC24C6.02 [A] KOG0345 ATP-dependent RNA helicase
Length = 606
Score = 172 bits (436), Expect = 2e-42
Identities = 162/557 (29%), Positives = 250/557 (44%), Gaps = 111/557 (19%)
Query: 150 TFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPI 209
+F S I D + + K T +Q IP FL+ DL + A TGSGKTLA+LLP
Sbjct: 2 SFQSINI-DKWLKNAVAAQGFKKMTPVQANAIPLFLK-NKDLVVEAVTGSGKTLAYLLPC 59
Query: 210 FQSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSEL-------AQCCHFLVPCLLIG 262
F + + T ++G AL+V PTRELA QI+ VT EL LV + IG
Sbjct: 60 FDKVT---RRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIG 116
Query: 263 GE-RKKSEKARLR-KGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELG 320
G+ ++ A R K + +IGTPGR+ + L + + L ++LDE D L+++G
Sbjct: 117 GKGTLTNDLASFREKNPSVVIGTPGRLNEMLSHIS------SKHLEILILDEADTLIDMG 170
Query: 321 FEETLKEILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVT-LQNYKLIS-- 377
F+ TL+ I++ +LPK+ L SAT+ V+ + L+N +S
Sbjct: 171 FQRTLQSIIS-------------QLPKQRRTGLFSATMNDTVSSFLKIAGLRNSVRVSVT 217
Query: 378 SGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSC 437
K+ +T T P L + +++PP ++ + L TI + + IVF S
Sbjct: 218 VTSKKIDTRT-PSSLAIQSLVIPPIYKVQCMIHLLCTI-----------EYEKAIVFFSS 265
Query: 438 SDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQT 497
SV++ +F ++ LP LHG Q
Sbjct: 266 CASVEYFNSLFLTYK--------------------LP---------FEIVALHGQQVQSN 296
Query: 498 RTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTA 557
R+ + F +N K +LF TD+ASRGLD+P+V V+++DPP + HR GR
Sbjct: 297 RSRNFEKFKKSN-----KKTVLFTTDIASRGLDIPNVDFVLQLDPPLDPKSFSHRCGRAG 351
Query: 558 RAGCEGESLLFLLPGEEEGYMDYIKPYHPKGWKLLTYDEQVLRPAFEGLNVRRTDKKKED 617
RAG G +++ L G EE Y E++LR + + R D E
Sbjct: 352 RAGRAGVAIVLLNDGREEEY------------------EELLR--VRKVPITRIDTPIEA 391
Query: 618 WDKHEAQAWDNNATTWHLNVERRVIEDSHFKELAVKGYMSHIRAYATHLSIEKKFFNLKC 677
D + + + + V +D + ++ ++SH+RAY H + F +K
Sbjct: 392 LDLSRLKVLTH-------ELRKIVSKDRDLYDKGLRAFVSHVRAYTKHHA--SFIFRIKD 442
Query: 678 LHLGHLAKSFALRERPK 694
L LG LA ++AL PK
Sbjct: 443 LDLGQLATAYALLHLPK 459
>ECU10g1680 [A] KOG0343 RNA Helicase
Length = 452
Score = 171 bits (432), Expect = 5e-42
Identities = 140/415 (33%), Positives = 210/415 (49%), Gaps = 77/415 (18%)
Query: 175 KIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVTPT 234
++Q+ VIP L+ +D+ +QTG+GKTLAFL+P Q ++SLG GC LV+TPT
Sbjct: 29 EVQQKVIPMALEG-HDIIGSSQTGTGKTLAFLVPTLQRLVSLGWGGGDGLGC--LVITPT 85
Query: 235 RELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLDHLQNT 294
RELA QI+ V S +A+ L L++GG + E ++ + N ++ TPGR+L HLQ
Sbjct: 86 RELALQIFDVLSRIAKYT-VLSTGLIMGGLEAEDELLKVNQ-MNILVCTPGRLLQHLQEN 143
Query: 295 KVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRILHVLC 354
+ +++ ++LDE DK++E+GF+E L++IL I P++ +L
Sbjct: 144 PYLS---TANVQILILDEADKMIEMGFKEVLEDILEYI-------------PQKKQTLLF 187
Query: 355 SATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSLTT 414
SAT K + ++ + L++ ++IS +++ P QL Q ++ +
Sbjct: 188 SATPKASTARI--LKLEDPRIISIYKEE----GFPSQLRQYFYMM----------RTGDK 231
Query: 415 ITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILP 474
I H GS +V + IVF S V FH +F RL +
Sbjct: 232 INYLHTFIGSNPEV-KGIVFFSTCKEVKFHCLLFE--------------RLKLRN----- 271
Query: 475 CFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHV 534
+ C L G +SQ+ R K F K K+ ILFCTD+ SRGLD P V
Sbjct: 272 --------RIFC--LSGGMSQKQRIDVFKRF------VKEKNGILFCTDLGSRGLDFPKV 315
Query: 535 STVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEEEGYMDYIKPYHPKGW 589
VI+ D P VE ++HR+GRTAR GES ++L+ GEE+ D K KGW
Sbjct: 316 DVVIQYDCPCNVETYVHRVGRTARNSERGESYVYLVHGEEKLLTDIQK----KGW 366
>7293369 [A] KOG0343 RNA Helicase
Length = 805
Score = 164 bits (414), Expect = 6e-40
Identities = 149/540 (27%), Positives = 241/540 (44%), Gaps = 114/540 (21%)
Query: 169 KISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFA 228
K PT++Q+ I P LQ + D+ A TGSGKTLAFL+P+ + + +R G A
Sbjct: 91 KFVHPTQVQRDSIGPALQGK-DVLGAAITGSGKTLAFLIPVLEHLFM--NKWSRTDGVGA 147
Query: 229 LVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVL 288
++++PTRELA QI++ ++ + H L+IGG+ K E+ R+ + N +I TPGR+L
Sbjct: 148 IIISPTRELAYQIFETLKKVGK-HHDFSAGLIIGGKNLKFERTRMDQ-CNILICTPGRLL 205
Query: 289 DHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKR 348
H+ + ++ +VLDE D+ +++GF++TL I+ FP + +
Sbjct: 206 QHMDENPLFN---TSTMEMLVLDEADRCLDMGFQKTLNSII----------ENFPPVRQT 252
Query: 349 ILHVLCSATVKGNVTKLGNVTLQNYKLI-----------SSGQKQTETT---TVPDQLLQ 394
+L SAT V L + L++ + S+ K+T T VP+ L Q
Sbjct: 253 LLF---SATQTNTVQDLARLNLKDPVYVGYGGATPREEPSASTKKTPNTAVLAVPELLQQ 309
Query: 395 KIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGN 454
V+ L L L + + H K+ + IVF++ + YE+F
Sbjct: 310 SYVV----LNLEDKITMLWSFIKNHLKQ-------KIIVFVASCKQAKYLYEIFCK---- 354
Query: 455 HRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKG 514
L G+ +L L+G+L Q R A + F +
Sbjct: 355 -----------LRPGSPLL--------------ALYGTLHQDRRIAIYEDF------LRK 383
Query: 515 KHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEE 574
H+++F TDVASRGLD P V+ V+++D P V ++HR GR+AR GE LL L P EE
Sbjct: 384 SHVVMFSTDVASRGLDFPAVNWVVQLDCPEDVSQYIHRAGRSARNKTRGECLLVLTPSEE 443
Query: 575 EGYMDYIKPYHPKGWKLLTYDEQVLRPAFEGLNVRRTDKKKEDWDKHEAQAWDNNATTWH 634
E + +K E LN+ D Q +
Sbjct: 444 EYMISALK---------------------EQLNI----------DIRCVQIDPKKLFSPR 472
Query: 635 LNVERRVIEDSHFKELAVKGYMSHIRAYATHLSIEKKFFNLKCLHLGHLAKSFALRERPK 694
+ +E + + + A + ++S+I+ + L K+ FN+ L L A+S L P+
Sbjct: 473 VKIEAFLAQFPELRATAQRAFLSYIK--SVFLMRNKRLFNVFSLDLDAFAQSLGLAVTPR 530
>7298752 [A] KOG0330 ATP-dependent RNA helicase
Length = 507
Score = 162 bits (411), Expect = 1e-39
Identities = 137/431 (31%), Positives = 208/431 (47%), Gaps = 83/431 (19%)
Query: 150 TFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPI 209
T+ G+ + + + ++K P+KIQ+ IP LQ + D+ A+TGSGKT AF LPI
Sbjct: 62 TWKDLGLNEALCQACD-ELKWKAPSKIQREAIPVALQGK-DVIGLAETGSGKTGAFALPI 119
Query: 210 FQSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSE 269
++L Q FALV+TPTRELA QI + L C+++GG ++
Sbjct: 120 LHALLENPQRY------FALVLTPTRELAFQIGEQFEALGSGIGIKC-CVVVGGMDMVAQ 172
Query: 270 KARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEIL 329
+L K + II TPGR++DHL+N K +++Y+V+DE D+++ + FE L +IL
Sbjct: 173 GLQLAKKPHIIIATPGRLVDHLENMKGFN---LKAIKYLVMDEADRILNMDFEVELDKIL 229
Query: 330 NIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQN-YKLISSGQKQTETTTV 388
+ LP+ L SAT+ V KL +L++ K+ S + QT
Sbjct: 230 KV-------------LPRERRTFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQT----- 271
Query: 389 PDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLS-CSDSVDFHYEV 447
+QL Q + +P K + V L L + + ++F S C+++V
Sbjct: 272 VEQLQQSYLFIPVKYKDVYLVHILNELAGNSF-----------MIFCSTCNNTV------ 314
Query: 448 FSSHDGNHRGLVGDTARLL-TKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFA 506
TA +L G + +P LHG +SQ R A L F
Sbjct: 315 -------------KTALMLRALGLAAIP--------------LHGQMSQNKRLAALNKFK 347
Query: 507 TNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESL 566
N + IL TDVASRGLD+PHV V+ D P +D++HR+GRTARAG G+++
Sbjct: 348 AKNRS------ILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAI 401
Query: 567 LFLLPGEEEGY 577
+ + E Y
Sbjct: 402 TLVSQYDIELY 412
>Hs13514831 [A] KOG0343 RNA Helicase
Length = 875
Score = 160 bits (405), Expect = 7e-39
Identities = 147/521 (28%), Positives = 235/521 (44%), Gaps = 104/521 (19%)
Query: 174 TKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVTP 233
T+IQK I LQ + D+ A+TGSGKTLAFL+P+ +++ L T G L+++P
Sbjct: 93 TEIQKQTIGLALQGK-DVLGAAKTGSGKTLAFLVPVLEALYRL--QWTSTDGLGVLIISP 149
Query: 234 TRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLDHLQN 293
TRELA Q ++V ++ + H L+IGG+ K E R+ N ++ TPGR+L H+
Sbjct: 150 TRELAYQTFEVLRKVGK-NHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDE 207
Query: 294 TKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRILHVL 353
T A L+ +VLDE D+++++GF +T+ ++ LPK+ +L
Sbjct: 208 TVSFH---ATDLQMLVLDEADRILDMGFADTMNAVIE-------------NLPKKRQTLL 251
Query: 354 CSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSLT 413
SAT +V L ++L+N + + +K +T P L Q ++ + ++ L L
Sbjct: 252 FSATQTKSVKDLARLSLKNPEYVWVHEKAKYST--PATLEQNYIVCELQQKISVLYSFL- 308
Query: 414 TITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSIL 473
+ H K+ ++IVF S V + Y VF L G SIL
Sbjct: 309 ---RSHLKK-------KSIVFFSSCKEVQYLYRVFCR---------------LRPGVSIL 343
Query: 474 PCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPH 533
LHG Q R F A +LF TD+A+RGLD P
Sbjct: 344 --------------ALHGRQQQMRRMEVYNEFVRKRAA------VLFATDIAARGLDFPA 383
Query: 534 VSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEEEGYMDYIKPYHPKGWKLLT 593
V+ V++ D P ++HR GRTAR +GE+LL LLP E+
Sbjct: 384 VNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEK------------------A 425
Query: 594 YDEQVLRPAFEGLNVRRTDKKKEDWDKHEAQAWDNNATTWHLNVERRVIEDSHFKELAVK 653
+Q+L+ ++ +K D K +E + +D KE A +
Sbjct: 426 MVQQLLQKKVPVKEIKINPEKLIDVQK---------------KLESILAQDQDLKERAQR 470
Query: 654 GYMSHIRAYATHLSIEKKFFNLKCLHLGHLAKSFALRERPK 694
++S++R + +L +K+ F++ L + A S L P+
Sbjct: 471 CFVSYVR--SVYLMKDKEVFDVSKLPIPEYALSLGLAVAPR 509
>CE00337 [A] KOG0330 ATP-dependent RNA helicase
Length = 489
Score = 159 bits (401), Expect = 2e-38
Identities = 123/406 (30%), Positives = 189/406 (46%), Gaps = 76/406 (18%)
Query: 172 KPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVV 231
KP+KIQ+ +P LQ + D+ A+TGSGKT AF +P+ QS+L Q F LV+
Sbjct: 66 KPSKIQQAALPHALQGK-DVIGLAETGSGKTGAFAIPVLQSLLDHPQAF------FCLVL 118
Query: 232 TPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLDHL 291
TPTRELA QI Q L L+ +++GG ++ L + + I+ TPGR++DHL
Sbjct: 119 TPTRELAFQIGQQFEALGSGIG-LIAAVIVGGVDMAAQAMALARRPHIIVATPGRLVDHL 177
Query: 292 QNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRILH 351
+NTK +L+++++DE D+++ + FE L +IL +I P+
Sbjct: 178 ENTKGFN---LKALKFLIMDEADRILNMDFEVELDKILKVI-------------PRERRT 221
Query: 352 VLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGS 411
L SAT+ V+KL +L++ +S + D L Q + VP K + L
Sbjct: 222 YLFSATMTKKVSKLERASLRDPARVSVSSRYKTV----DNLKQHYIFVPNKYKETYLV-- 275
Query: 412 LTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNS 471
Y + + + +C+ ++ L G
Sbjct: 276 --------YLLNEHAGNSAIVFCATCATTMQI------------------AVMLRQLGMQ 309
Query: 472 ILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDL 531
+P LHG +SQ+ R +L F + IL CTDVA+RGLD+
Sbjct: 310 AVP--------------LHGQMSQEKRLGSLNKFKSK------AREILVCTDVAARGLDI 349
Query: 532 PHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEEEGY 577
PHV VI D P +D++HR+GRTARAG G ++ + + E Y
Sbjct: 350 PHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQYDVEAY 395
>YGL078c [A] KOG0331 ATP-dependent RNA helicase
Length = 523
Score = 158 bits (399), Expect = 3e-38
Identities = 143/476 (30%), Positives = 220/476 (46%), Gaps = 83/476 (17%)
Query: 92 DNSSNVEQPARVTQPLQLNSQIVSSLFTSSRNIDTVTNSNAHDEKAEVTYSNAPLVGDTF 151
++ E + V + S+ ++SL S +ID N + + + PL+ +F
Sbjct: 61 ESEKKPEPTSAVASEFYVQSEALTSLPQS--DIDEYFKENEIAVEDSLDLALRPLL--SF 116
Query: 152 DSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQ 211
D + ++ + ++ K KPT IQ V P+L + D+ A+TGSGKT AF +P
Sbjct: 117 DYLSLDSSIQAEIS---KFPKPTPIQA-VAWPYLLSGKDVVGVAETGSGKTFAFGVPAIS 172
Query: 212 SILSLGQNITRQSGCFALVVTPTRELANQIYQ----VTSELAQCCHFLVPCLLIGGERKK 267
++ N ++ G LV++PTRELA+QIY +T ++ C C + GG K
Sbjct: 173 HLM----NDQKKRGIQVLVISPTRELASQIYDNLIVLTDKVGMQC-----CCVYGGVPKD 223
Query: 268 SEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKE 327
++ +L+K + ++ TPGR+LD LQ V Q+ Y+VLDE D+++E GFEE +K
Sbjct: 224 EQRIQLKK-SQVVVATPGRLLDLLQEGSVDLSQV----NYLVLDEADRMLEKGFEEDIK- 277
Query: 328 ILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTT 387
NII D Q ++ +AT V +L + + N +S G T+ T
Sbjct: 278 --NIIRETDASKRQ---------TLMFTATWPKEVRELASTFMNNPIKVSIG--NTDQLT 324
Query: 388 VPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEV 447
++ Q + +V P+ + L L K Y G K + I L ++
Sbjct: 325 ANKRITQIVEVVDPRGKERKLLELL-----KKYHSGPKKNEKVLIFALYKKEAARVE--- 376
Query: 448 FSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFAT 507
L G ++ +HG LSQQ RT L F +
Sbjct: 377 ---------------RNLKYNGYNVA--------------AIHGDLSQQQRTQALNEFKS 407
Query: 508 NNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEG 563
GK +L TDVA+RGLD+P+V TVI + P VED++HRIGRT RAG G
Sbjct: 408 ------GKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQTG 457
>CE25231 [A] KOG0343 RNA Helicase
Length = 732
Score = 155 bits (393), Expect = 2e-37
Identities = 143/526 (27%), Positives = 234/526 (44%), Gaps = 107/526 (20%)
Query: 171 SKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALV 230
+KPT+IQ+ I L +D+ A+TGSGKTLA ++P+ +++ + G AL+
Sbjct: 97 TKPTEIQRDTIAYSLTG-SDVVGAAKTGSGKTLALVIPVLEALWRA--KWSPDYGLGALI 153
Query: 231 VTPTRELANQIYQVTSELAQCCHFLVPC-LLIGGERKKSEKARLRKGANFIIGTPGRVLD 289
++PTRELA Q + + + H C L+IGG E+ R+ G N I+ TPGR+L
Sbjct: 154 ISPTRELALQTFSTINAVG--AHHGFSCGLVIGGSDVAFERNRI-SGINIIVCTPGRLLQ 210
Query: 290 HLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRI 349
H+ + SL+ +VLDE D+++++GF + L I+N LP
Sbjct: 211 HMDENA---QMSCDSLQVLVLDEADRMLDMGFSKQLNSIIN-------------NLPAER 254
Query: 350 LHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLA 409
+L SAT NV L V + +S + + T PD L Q VIV + ++
Sbjct: 255 QTLLFSATQTRNVKDLCRVCTNDPVFVSVHENASAAT--PDNLKQSYVIVEEEHKI---- 308
Query: 410 GSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKG 469
+L + + H K+ +++VF+S F E FS
Sbjct: 309 NALWSFIEAHRKK-------KSLVFVSSCKQARFLTEAFSQLR----------------- 344
Query: 470 NSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGL 529
P + L G+++Q+ R T F + K +L TDVASRGL
Sbjct: 345 ------------PGLPVMGLWGTMNQKKRIETFTKF------DESKAAVLIATDVASRGL 386
Query: 530 DLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEEEGYMDYIKPYHPKGW 589
D H+ VI++D P ++D++HR+GR+AR G SLL + P +EE + ++ +
Sbjct: 387 DFEHIDWVIQVDCPAQIDDYIHRVGRSARMDDSGNSLLMVSPSQEEAMIGKLEKHS---- 442
Query: 590 KLLTYDEQVLRP-AFEGLNVRRTDKKKEDWDKHEAQAWDNNATTWHLNVERRVIEDSHFK 648
+ +E + P A + V+ + + E K
Sbjct: 443 --IPIEELKIHPDAMSDVRVK---------------------------LRAILAESQELK 473
Query: 649 ELAVKGYMSHIRAYATHLSIEKKFFNLKCLHLGHLAKSFALRERPK 694
E A K ++++R+ T +KK F+++ + LA SF L P+
Sbjct: 474 EYAQKSIVAYLRSIYT--MKDKKVFDVEAIDAAALADSFGLVSVPR 517
>At2g42520 [A] KOG0335 ATP-dependent RNA helicase
Length = 633
Score = 155 bits (393), Expect = 2e-37
Identities = 135/489 (27%), Positives = 224/489 (45%), Gaps = 74/489 (15%)
Query: 92 DNSSNVEQPARVTQPLQLNSQIVSSLFTSSRNIDTVTNSNAHDE-KAEVTYSNAPLVGDT 150
+ S ++ R P + + FT N TV N +A+++ E + N P +T
Sbjct: 103 NRSGGWDRREREVNPFENDDSEPEPAFTEQDN--TVINFDAYEDIPIETSGDNVPPPVNT 160
Query: 151 FDSFGITDTMVSHLNVKM-KISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPI 209
F + + + +LN++ K KPT +Q+ IP L+ + DL AQTGSGKT AF PI
Sbjct: 161 FAEIDLGEAL--NLNIRRCKYVKPTPVQRHAIPILLEGR-DLMACAQTGSGKTAAFCFPI 217
Query: 210 FQSILSLGQNITRQSGC-----FALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGE 264
I+ Q++ R G A++++PTRELA+QI+ + + V + GG
Sbjct: 218 ISGIMK-DQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGVKV-VVAYGGT 275
Query: 265 RKKSEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEET 324
+ L +G + ++ TPGR+ D L+ +V + +R++ LDE D+++++GFE
Sbjct: 276 PINQQLRELERGVDILVATPGRLNDLLERARVSMQM----IRFLALDEADRMLDMGFEPQ 331
Query: 325 LKEILNIIHGIDIDTHQFPKLPKRILH-VLCSATVKGNVTKLGNVTLQNYKLISSGQKQT 383
+++I+ Q P+ + +L SAT + +L L NY ++ G+ +
Sbjct: 332 IRKIV----------EQMDMPPRGVRQTLLFSATFPREIQRLAADFLANYIFLAVGRVGS 381
Query: 384 ETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDF 443
T D ++Q++ V + L + + G + T+VF+ D
Sbjct: 382 ST----DLIVQRVEFVLDSDK----RSHLMDLLHAQRENGIQGKQALTLVFVETKRGAD- 432
Query: 444 HYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLK 503
+ N + C N ++ HG +QQ R LK
Sbjct: 433 -----------------------SLENWL--CINGFPATSI-----HGDRTQQEREVALK 462
Query: 504 HFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEG 563
F + G+ IL TDVA+RGLD+PHV+ V+ D P ++D++HRIGRT RAG G
Sbjct: 463 AFKS------GRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSG 516
Query: 564 ESLLFLLPG 572
+ F G
Sbjct: 517 LATAFFNDG 525
>YHR065c [A] KOG0330 ATP-dependent RNA helicase
Length = 543
Score = 154 bits (390), Expect = 4e-37
Identities = 137/451 (30%), Positives = 206/451 (45%), Gaps = 88/451 (19%)
Query: 117 LFTSSRNIDTVTNSNAHDEKAEVTYSNAPLVGDTFDSFGITDTMVSHLNVKMKISKPTKI 176
L + S++ + N N +++++ ++S LV + + +LN SKPT I
Sbjct: 101 LKSKSKSTVSTQNENTNEDESFESFSELNLVPELIQA-------CKNLNY----SKPTPI 149
Query: 177 QKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVTPTRE 236
Q IPP L+ +D+ AQTGSGKT AF +PI + Q +A ++ PTRE
Sbjct: 150 QSKAIPPALEG-HDIIGLAQTGSGKTAAFAIPILNRLWH------DQEPYYACILAPTRE 202
Query: 237 LANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLDHLQNTKV 296
LA QI + L C+ +GG + L + + II TPGR++DHL+NTK
Sbjct: 203 LAQQIKETFDSLGSLMGVRSTCI-VGGMNMMDQARDLMRKPHIIIATPGRLMDHLENTKG 261
Query: 297 IKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRILHVLCSA 356
+ L+++V+DE D+L+++ F L IL II + T+ F SA
Sbjct: 262 FSLR---KLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTYLF------------SA 306
Query: 357 TVKGNVTKLGNVTLQN-YKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTI 415
T+ + KL +L N K S + QT D L+Q +++VP L+ L L
Sbjct: 307 TMTSKIDKLQRASLTNPVKCAVSNKYQT-----VDTLVQTLMVVPGGLKNTYLIYLLNEF 361
Query: 416 TQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILPC 475
+ +T++ +F+ N L G LL
Sbjct: 362 ------------IGKTMI-------------IFTRTKANAERLSG-LCNLLE-------- 387
Query: 476 FNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVS 535
F+ T LHG L+Q R +L F GK IL TDVA+RGLD+P V
Sbjct: 388 FSAT--------ALHGDLNQNQRMGSLDLFKA------GKRSILVATDVAARGLDIPSVD 433
Query: 536 TVIEMDPPFAVEDHLHRIGRTARAGCEGESL 566
V+ D P + ++HR+GRTARAG G+S+
Sbjct: 434 IVVNYDIPVDSKSYIHRVGRTARAGRSGKSI 464
>ECU10g0690 [A] KOG0345 ATP-dependent RNA helicase
Length = 463
Score = 154 bits (389), Expect = 5e-37
Identities = 142/448 (31%), Positives = 210/448 (46%), Gaps = 95/448 (21%)
Query: 172 KPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVV 231
K T++Q IP L+ + D+ + + TG+GKT+AFL PI I G+ R G A+V+
Sbjct: 26 KMTEVQLKCIPEVLKGK-DVVVQSPTGTGKTMAFLAPILSCIYD-GKGRGRP-GVTAVVI 82
Query: 232 TPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLDHL 291
TPTRELA QI +V C IGG + + R+++ + +GTPGR+L+ +
Sbjct: 83 TPTRELALQIREVAGLFDVKCE-----CFIGGMSIEEDYKRMKEEFSIAVGTPGRLLEIV 137
Query: 292 -QNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRIL 350
+ TK SL ++VLDE DKL+ GFEE L ++L KLP+ +
Sbjct: 138 GKETKKFS-----SLSHLVLDEADKLLGFGFEEKLMQLL-------------AKLPRNRV 179
Query: 351 HVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAG 410
L SAT +V KL V L+N I+ G + + ++V P +L+ L
Sbjct: 180 TGLFSATRNDSVDKLSRVFLRNPVSINVGNNEMPVAL-------EYIVVSPMEKLLVLMD 232
Query: 411 SLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGN 470
+T R IVF + VDF FS GLV GN
Sbjct: 233 IVTG--------------RRCIVFFATCSEVDF----FS-------GLVSRAG----FGN 263
Query: 471 SILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLD 530
IC K+HG +SQ R + F + +LFCTDVA+RG+D
Sbjct: 264 --------------IC-KIHGKISQDERNRVYEEFFQRDG-------LLFCTDVAARGID 301
Query: 531 LPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEEEGYMDYIK----PYHP 586
V V+ D P +HR GRTAR G +GES+LF++P E Y++++K P
Sbjct: 302 FRGVDLVVHFDVPKEYSSIVHRSGRTARNGSKGESVLFVMP-NERAYVEFLKLKGIPAVE 360
Query: 587 KGWKL---LTYDE--QVLRPAFEGLNVR 609
+++ L+Y + ++ P GL+V+
Sbjct: 361 SSYRMKSSLSYQDIKSMISPELLGLSVK 388
>At3g58570 [A] KOG0335 ATP-dependent RNA helicase
Length = 646
Score = 153 bits (387), Expect = 8e-37
Identities = 131/452 (28%), Positives = 210/452 (45%), Gaps = 72/452 (15%)
Query: 125 DTVTNSNAHDE-KAEVTYSNAPLVGDTFDSFGITDTMVSHLNV-KMKISKPTKIQKLVIP 182
+TV N A+++ E + N P +TF + + + +LN+ + K KPT +Q+ IP
Sbjct: 121 NTVINFEAYEDIPIETSGDNVPPPVNTFAEIDLGEAL--NLNIQRCKYVKPTPVQRNAIP 178
Query: 183 PFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGC-----FALVVTPTREL 237
L A DL AQTGSGKT AF PI I+ Q+I R G A++++PTREL
Sbjct: 179 -ILAAGRDLMACAQTGSGKTAAFCFPIISGIMK-DQHIERPRGVRGVYPLAVILSPTREL 236
Query: 238 ANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLDHLQNTKVI 297
A QI+ + + V + GG + L +G + ++ TPGR+ D L+ +V
Sbjct: 237 ACQIHDEARKFSYQTGVKV-VVAYGGTPVNQQIRELERGVDILVATPGRLNDLLERGRVS 295
Query: 298 KEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRILH-VLCSA 356
+ +R++ LDE D+++++GFE +++I+ Q P + +L SA
Sbjct: 296 LQM----VRFLALDEADRMLDMGFEPQIRKIV----------QQMDMPPPGVRQTMLFSA 341
Query: 357 TVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTIT 416
T + +L + L NY ++ G+ + T D ++Q++ V + L +
Sbjct: 342 TFPREIQRLASDFLSNYIFLAVGRVGSST----DLIVQRVEFVHDSDK----RSHLMDLL 393
Query: 417 QKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILPCF 476
+ G++ T+VF+ D + N + C
Sbjct: 394 HAQRENGNQGKQALTLVFVETKKGAD------------------------SLENWL--CI 427
Query: 477 NDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVST 536
N + HG SQQ R L+ F T G+ IL TDVA+RGLD+PHV+
Sbjct: 428 NGFPATTI-----HGDRSQQEREVALRSFKT------GRTPILVATDVAARGLDIPHVAH 476
Query: 537 VIEMDPPFAVEDHLHRIGRTARAGCEGESLLF 568
V+ D P ++D++HRIGRT RAG G + F
Sbjct: 477 VVNFDLPNDIDDYVHRIGRTGRAGNSGLATAF 508
>At5g54910 [A] KOG0343 RNA Helicase
Length = 739
Score = 152 bits (385), Expect = 1e-36
Identities = 120/403 (29%), Positives = 191/403 (46%), Gaps = 70/403 (17%)
Query: 174 TKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVTP 233
T +Q IP L + D+ A+TGSGKTLAF++PI + + + + + G ++++P
Sbjct: 95 TDVQSAAIPHALCGR-DILGAARTGSGKTLAFVIPILEKLHR--ERWSPEDGVGCIIISP 151
Query: 234 TRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLDHLQN 293
TRELA Q + V +++ + F L+ G E EK R+ + N ++ PGR+L H+
Sbjct: 152 TRELAAQTFGVLNKVGKFHKFSAGLLIGGREGVDVEKERVHE-MNILVCAPGRLLQHMDE 210
Query: 294 TKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRILHVL 353
T + P L+ ++LDE D++++ F+ L I++ +LPK +L
Sbjct: 211 TPNFE---CPQLQILILDEADRVLDSAFKGQLDPIIS-------------QLPKHRQTLL 254
Query: 354 CSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSLT 413
SAT V L ++L++ + IS + T P L+Q ++IVP + +L L +
Sbjct: 255 FSATQTKKVKDLARLSLRDPEYISVHAE--AVTATPTSLMQTVMIVPVEKKLDMLWSFIK 312
Query: 414 TITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSIL 473
T +R +VFLS V F +E F+
Sbjct: 313 THLN-----------SRILVFLSTKKQVKFVHEAFNKL---------------------- 339
Query: 474 PCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPH 533
P + LHG +SQ+ R F + +LFCTDV +RGLD
Sbjct: 340 -------RPGIPLKSLHGKMSQEKRMGVYSQFIE-------RQSVLFCTDVLARGLDFDK 385
Query: 534 -VSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEEE 575
V V+++D P V ++HR+GRTAR +G+SLLFL P EE+
Sbjct: 386 AVDWVVQVDCPEDVASYIHRVGRTARFYTQGKSLLFLTPSEEK 428
>At5g05450 [A] KOG0345 ATP-dependent RNA helicase
Length = 593
Score = 152 bits (385), Expect = 1e-36
Identities = 150/576 (26%), Positives = 243/576 (42%), Gaps = 118/576 (20%)
Query: 128 TNSNAHDEKAEVTYSNA--PLVGDTFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFL 185
+++N + E +S+ PL GD ++ +D T +Q IP L
Sbjct: 3 SSANINKALTETRFSDLEPPLSGDIIEALNQSDFEFC-----------TPVQAATIP-LL 50
Query: 186 QAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVTPTRELANQIYQVT 245
+ D+ + A TGSGKTLAF++P+ + + + ++++PTREL+ QIY V
Sbjct: 51 CSYKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPPKPHQVMGVIISPTRELSTQIYNVA 110
Query: 246 SELAQCCHFLVPCLLIGGERKKSE-KARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPS 304
+ LL+GG K++ K +G N +IGTPGR+ D ++ +++ + +
Sbjct: 111 QPFVSTLANVNSVLLVGGREVKADMKIIEEEGCNVLIGTPGRLSDIMERMEILDFR---N 167
Query: 305 LRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTK 364
L ++LDE D+L+E+GF+ + I++ +LPK+ L SAT V +
Sbjct: 168 LEILILDEADRLLEMGFQRQVNYIIS-------------RLPKQRRTGLFSATQTEGVEE 214
Query: 365 LGNVTLQN-------YKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQ 417
L L+N K S +Q + P L + + + L L
Sbjct: 215 LAKAGLRNPVRVEVRAKSKSESSQQLTNSKTPSGLHLEYMECEADKKSSQLVDLLI---- 270
Query: 418 KHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFN 477
SD + F++C+ SVD+ GLV L K S++P
Sbjct: 271 ------KNSDKKLIVFFMTCA-SVDYW------------GLVLSKIPAL-KSISLIP--- 307
Query: 478 DTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTV 537
+HG + Q R L F TK L CTDVA+RGLD+P + V
Sbjct: 308 -----------IHGDMKQNARDKALASF------TKASSGALLCTDVAARGLDIPGIDYV 350
Query: 538 IEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEEEGYMDYIKPYHPKGWKLLTYDEQ 597
++ DPP HR GRTAR G +G +++FLLP +EE Y+++++
Sbjct: 351 VQYDPPQDPNMFNHRAGRTARLGRQGRAIVFLLP-KEEAYVEFMR--------------- 394
Query: 598 VLRPAFEGLNVRRTDKKKEDWDKHEAQAWDNNATTWHLNVERRVIEDSHFKELAVKGYMS 657
+RR E + +A+ + ++D E +K ++S
Sbjct: 395 ----------IRRVPL--------EERKCSEDASDVIPIIRSAAMKDRAVMEKGLKAFVS 436
Query: 658 HIRAYATHLSIEKKFFNLKCLHLGHLAKSFALRERP 693
+RAY H F K L +G LA + L P
Sbjct: 437 FVRAYKEHHC--SFIFRWKDLEIGKLAMGYGLLYLP 470
>Hs19743937 [A] KOG0338 ATP-dependent RNA helicase
Length = 796
Score = 152 bits (383), Expect = 2e-36
Identities = 132/416 (31%), Positives = 197/416 (46%), Gaps = 82/416 (19%)
Query: 168 MKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQN--ITRQSG 225
M +PT IQK IP L + D+ A TG+GKT AF LP+ + ++ + +TR
Sbjct: 236 MGFKQPTPIQKACIPVGLLGK-DICACAATGTGKTAAFALPVLERLIYKPRQAPVTR--- 291
Query: 226 CFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPG 285
LV+ PTREL Q++ VT +LAQ C+ + CL +GG KS++A LR + +I TPG
Sbjct: 292 --VLVLVPTRELGIQVHSVTRQLAQFCN-ITTCLAVGGLDVKSQEAALRAAPDILIATPG 348
Query: 286 RVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKL 345
R++DHL N S+ ++LDE D++++ FEE +KEI+ + +H +
Sbjct: 349 RLIDHLHNCPSFH---LSSIEVLILDEADRMLDEYFEEQMKEIIRMC------SHHRQTM 399
Query: 346 PKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRL 405
L SAT+ V L +V+L+N I T V L Q+ + + P
Sbjct: 400 -------LFSATMTDEVKDLASVSLKNPVRIF----VNSNTDVAPFLRQEFIRIRPN--- 445
Query: 406 VTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNH--RGLVGDTA 463
+EG + + ++ + +D V + H GL+G
Sbjct: 446 ---------------REGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMG--- 487
Query: 464 RLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHL-ILFCT 522
L G +LHG+LSQ R L+ F K + + IL T
Sbjct: 488 --LQVG------------------ELHGNLSQTQRLEALRRF-------KDEQIDILVAT 520
Query: 523 DVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEEEGYM 578
DVA+RGLD+ V TVI P ++ ++HR+GRTARAG G S+ L GE+E M
Sbjct: 521 DVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSV--SLVGEDERKM 574
>Hs13514809 [A] KOG0335 ATP-dependent RNA helicase
Length = 660
Score = 151 bits (382), Expect = 3e-36
Identities = 133/479 (27%), Positives = 220/479 (45%), Gaps = 85/479 (17%)
Query: 104 TQPLQLNSQIVSSLFTSSRNIDTVTNSNAHDE-KAEVTYSNAPLVGDTFDSFGITDTMVS 162
++PL + ++ LF+ +T N +D+ E T SN P + F + + ++
Sbjct: 135 SKPLPPSERLEQELFSGG---NTGINFEKYDDIPVEATGSNCPPHIENFSDIDMGEIIMG 191
Query: 163 HLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQ---- 218
++ + + ++PT +QK IP ++ + DL AQTGSGKT AFLLPI I + G
Sbjct: 192 NIELT-RYTRPTPVQKHAIP-IIKGKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEAL 249
Query: 219 NITRQSGCF--------ALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEK 270
+++G + +LV+ PTRELA QIY+ + + + PC++ GG +
Sbjct: 250 KAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSR-VRPCVVYGGADIGQQI 308
Query: 271 ARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILN 330
L +G + ++ TPGR++D ++ K+ + +Y+VLDE D+++++GFE ++ I
Sbjct: 309 RDLERGCHLLVATPGRLVDMMERGKIGLD----FCKYLVLDEADRMLDMGFEPQIRRI-- 362
Query: 331 IIHGIDIDTHQFPKLPKRILH-VLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVP 389
++ DT PK + H ++ SAT + L L Y ++ G+ +
Sbjct: 363 ----VEQDTMP----PKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR----VGSTS 410
Query: 390 DQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFS 449
+ + QK+V V + L L G+ + T+VF+ D E F
Sbjct: 411 ENITQKVVWVEDLDKRSFLLDIL----------GATGSDSLTLVFVETKKGAD-SLEDFL 459
Query: 450 SHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNN 509
H+G C +HG SQ+ R L F +
Sbjct: 460 YHEG------------------------------YACTSIHGDRSQRDREEALHQFRS-- 487
Query: 510 DATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLF 568
GK IL T VA+RGLD+ +V VI D P +E+++HRIGRT R G G + F
Sbjct: 488 ----GKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSF 542
>7299006 [A] KOG0345 ATP-dependent RNA helicase
Length = 613
Score = 151 bits (381), Expect = 4e-36
Identities = 149/530 (28%), Positives = 236/530 (44%), Gaps = 99/530 (18%)
Query: 174 TKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNIT----RQSGCFAL 229
T +Q IP L A+ D+ A TGSGKTLAFL+P+ + IL T ++ G AL
Sbjct: 31 TPVQTAAIP-LLLARKDVSAEAVTGSGKTLAFLVPMLE-ILQRRHKETPWGPKEIG--AL 86
Query: 230 VVTPTRELANQIYQVTSELA--QCCHFLVPCLLIGGERKKSEKARLRKGAN-FIIGTPGR 286
V++PTRELA QI +V ++ + L L++GG + + A LR+ ++ TPGR
Sbjct: 87 VISPTRELARQISEVLAQFLEHEDLEHLNQQLIVGGNSIEEDIATLRRETPCILVCTPGR 146
Query: 287 VLDHLQ--NTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPK 344
+ D Q + SL ++VLDE D+L++LGF+ ++ IL
Sbjct: 147 LEDLFQRKGDDLNLAAQVKSLEFLVLDEADRLLDLGFKTSVNNILGY------------- 193
Query: 345 LPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLR 404
LP++ L SAT VT L L+N L+S +K + T P +L IV P+L+
Sbjct: 194 LPRQRRTGLFSATQTTEVTDLIRAGLRNPVLVSVKEKASVNT--PARLQNFYRIVEPELK 251
Query: 405 LVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTAR 464
V L L++ + + + +VF V++ E
Sbjct: 252 FVALLEFLSS---------PATVIGKVMVFFPTCACVEYWAEALPP-------------- 288
Query: 465 LLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDV 524
LL K + +HG + + R ++ F A +L CTDV
Sbjct: 289 LLPKRTVL---------------GIHGKMKNK-RANVVEKFRNTPQA------VLLCTDV 326
Query: 525 ASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEEEGYMDYIKPY 584
+RGLD+P + V++ DPP +HR+GRTAR G EG +L+FLLP E+ Y+ ++K
Sbjct: 327 LARGLDVPEIEWVVQWDPPSTASSFVHRVGRTARQGNEGNALVFLLP-SEDAYVHFLK-- 383
Query: 585 HPKGWKLLTYDEQVLRPAFEGLNVRRTDKKKEDWDKHEAQAWDNNATTWHLNVERRVIED 644
+ E + + + D +K + A + + R D
Sbjct: 384 --------------INQKVELTKLLTEEAEDADREKKKLPAVLD-------QLHRLQAAD 422
Query: 645 SHFKELAVKGYMSHIRAYATHLSIEKKFFNLKCLHLGHLAKSFALRERPK 694
+ ++ ++SH+RAY H LK L LG +A ++ L + P+
Sbjct: 423 KGVYDKGMRAFVSHVRAYTKHEC--SAILRLKDLDLGKMATAYGLLQLPR 470
>At3g58510 [A] KOG0335 ATP-dependent RNA helicase
Length = 603
Score = 150 bits (380), Expect = 5e-36
Identities = 132/460 (28%), Positives = 213/460 (45%), Gaps = 85/460 (18%)
Query: 117 LFTSSRNIDTVTNSNAHDE-KAEVTYSNAPLVGDTFDSFGITDTMVSHLNVKM-KISKPT 174
+FT N T N +A+++ E + + P +TF + D + +LN++ K +PT
Sbjct: 120 VFTEQEN--TGINFDAYEDIPVETSGGDVPPPVNTFADIDLGDAL--NLNIRRCKYVRPT 175
Query: 175 KIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGC-----FAL 229
+Q+ IP L A+ DL AQTGSGKT AF PI I+ Q++ R G FA+
Sbjct: 176 PVQRHAIP-ILLAERDLMACAQTGSGKTAAFCFPIISGIMK-DQHVERPRGSRAVYPFAV 233
Query: 230 VVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLD 289
+++PTRELA QI+ + + V + GG + L +G + ++ TPGR+ D
Sbjct: 234 ILSPTRELACQIHDEAKKFSYQTGVKV-VVAYGGTPIHQQLRELERGCDILVATPGRLND 292
Query: 290 HLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRI 349
L+ +V + +R++ LDE D+++++GFE +++I+ Q P+ +
Sbjct: 293 LLERARVSMQM----IRFLALDEADRMLDMGFEPQIRKIV----------EQMDMPPRGV 338
Query: 350 LH-VLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTL 408
+L SAT + +L + NY ++ G+ + T D + Q++ V
Sbjct: 339 RQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVGSST----DLITQRVEFV--------- 385
Query: 409 AGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTK 468
+E K S +D + + D RG DT
Sbjct: 386 ------------QESDKR-----------SHLMDLLHAQRETQDKTKRG--ADTLENWL- 419
Query: 469 GNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRG 528
C N+ ++ HG +QQ R L+ F T G+ IL TDVA+RG
Sbjct: 420 ------CMNEFPATSI-----HGDRTQQEREVALRSFKT------GRTPILVATDVAARG 462
Query: 529 LDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLF 568
LD+PHV+ V+ D P ++D++HRIGRT RAG G + F
Sbjct: 463 LDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAF 502
>SPBC17D1.06 [A] KOG0331 ATP-dependent RNA helicase
Length = 578
Score = 150 bits (378), Expect = 9e-36
Identities = 142/488 (29%), Positives = 220/488 (44%), Gaps = 88/488 (18%)
Query: 96 NVEQPARVTQPLQLNSQIVSSLFTSSRNIDTVTNSNAHDEKAEVTYSNAPLVG--DTFDS 153
N E+ A++ QP I + SN +DE+A Y + D S
Sbjct: 117 NAEEGAKIAQPA----------------IGSANASNHNDEEAYDRYIKKHNISFADPKSS 160
Query: 154 FGITDTM-VSHLNVKMKISKPTKIQKLVIP------PFLQAQNDLFIHAQTGSGKTLAFL 206
+ + L+V K+ + K K P P+L A D+ A+TGSGKT+AF
Sbjct: 161 ENLLPILQFDELDVSAKLREGLKNYKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFG 220
Query: 207 LPIFQSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERK 266
+P Q + L N +S LVV+PTRELA Q Y+ + L Q + + +++ G
Sbjct: 221 IPALQYLNGLSDN---KSVPRVLVVSPTRELAIQTYENLNSLIQGTN--LKAVVVYGGAP 275
Query: 267 KSEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLK 326
KSE+AR K A+ IIGTPGR+LD + + + Q+ Y+VLDE D++++ GFE+ ++
Sbjct: 276 KSEQARAAKNASVIIGTPGRLLDLINDGSIDCSQVG----YLVLDEADRMLDTGFEQDIR 331
Query: 327 EILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETT 386
I++ H D P V SAT +V L L++ I+ G + +
Sbjct: 332 NIIS--HTPD------PTRNGSRQTVFFSATWPESVRALAATFLKDPVKITIGSDELAAS 383
Query: 387 TVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYE 446
Q+++ + K R+ L + +KH G K D + ++F+
Sbjct: 384 QNITQIVEILDDPRSKERM------LDNLLRKHLSSGGKDD--KILIFV----------- 424
Query: 447 VFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFA 506
++ G L K N + +HG +SQ R L
Sbjct: 425 LYKKEAARVEG------TLARKYNVV---------------GIHGDMSQGARLQAL---- 459
Query: 507 TNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESL 566
ND GK +L TDVA+RGLD+P V VI + P +ED++HRIGRT RA +G ++
Sbjct: 460 --NDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHRIGRTGRANTKGTAI 517
Query: 567 LFLLPGEE 574
F P ++
Sbjct: 518 TFFTPQDK 525
>SPAC30D11.03 [A] KOG0338 ATP-dependent RNA helicase
Length = 754
Score = 149 bits (377), Expect = 1e-35
Identities = 140/522 (26%), Positives = 227/522 (42%), Gaps = 80/522 (15%)
Query: 80 AQAPVEPKRSRFDNSSNVEQPARVTQPL---------QLNSQIVSSLFTSSRNIDTVTNS 130
A A E + + S E+ +T+P+ NS + S + + +
Sbjct: 181 AGAIAENEDESSQDESESEEEDDITEPVPSFANISTQDFNSDSAAGSSDSEEDEEEIAKK 240
Query: 131 NAHDEKAEVTYSNAPLVGDTFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQND 190
NA + + S +F S ++ ++ L+ + PT+IQ IP L + D
Sbjct: 241 NAFFAEGDKEKSMMTTTHSSFQSMNLSRPILKGLS-NLGFEVPTQIQDKTIPLALLGK-D 298
Query: 191 LFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQ 250
+ A TGSGKT AF++PI + +L + + L++ PTRELA Q + V +++A
Sbjct: 299 IVGAAVTGSGKTAAFIVPILERLLYRPKKVPTTR---VLILCPTRELAMQCHSVATKIAS 355
Query: 251 CCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVL 310
+V CL IGG K ++ LRK + +I TPGR +DH++N++ + ++ +V+
Sbjct: 356 FTDIMV-CLCIGGLSLKLQEQELRKRPDIVIATPGRFIDHMRNSQGFTVE---NIEIMVM 411
Query: 311 DEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTL 370
DE D+++E GF + L EI+ PK +L SAT+ V L ++L
Sbjct: 412 DEADRMLEDGFADELNEIIQ-------------ACPKSRQTMLFSATMTDKVDDLIRLSL 458
Query: 371 QNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTR 430
+ K+T L Q+ V V P+ L+ A + + ++ R
Sbjct: 459 NRPVRVFVDNKKTTAKL----LTQEFVRVRPQRELLRPAMLIYLCKELFHR--------R 506
Query: 431 TIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLH 490
TI+F F + F+ GL+ A ++H
Sbjct: 507 TIIF--------FRSKAFAHKMRVIFGLLSLNAT-----------------------EIH 535
Query: 491 GSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHL 550
GSLSQ+ R L+ F GK L TDVASRG+D+ + VI + P E +L
Sbjct: 536 GSLSQEQRVRALEDF------RDGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVYL 589
Query: 551 HRIGRTARAGCEGESLLFLLPGEEEGYMDYIKPYHPKGWKLL 592
HR+GRTARAG G ++ G+ + K + KL+
Sbjct: 590 HRVGRTARAGRSGRAITLAGEGDRKVLKGVFKNSSAQNTKLV 631
>ECU10g0440 [A] KOG0330 ATP-dependent RNA helicase
Length = 400
Score = 149 bits (377), Expect = 1e-35
Identities = 124/402 (30%), Positives = 192/402 (46%), Gaps = 87/402 (21%)
Query: 170 ISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFAL 229
I++PT++Q+ VIP L D+ +QTGSGKTLAF+LPI +L ++ + L
Sbjct: 21 ITRPTEVQRQVIPAVLGG-GDVIAVSQTGSGKTLAFVLPIVSHLLQKNRSF------YCL 73
Query: 230 VVTPTRELANQIYQVTSELAQCCHF-----LVPCLLIGGERKKSEKARLRKGANFIIGTP 284
VV PTREL++QI A+C + L CLL+GG + +L K + ++GTP
Sbjct: 74 VVAPTRELSSQI-------AECFNMFQATGLRVCLLVGGANFNVQANQLSKRPHVVVGTP 126
Query: 285 GRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPK 344
GR+ +H+ TK + + +R VLDE D+ E F E L+ I+ P
Sbjct: 127 GRIAEHVLKTKSFRTE---RVRKFVLDEADRFFEQDFVEDLETII-------------PS 170
Query: 345 LPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLR 404
L ++ +L +AT+ ++KL + L+ K I + +K TVP L + + V K +
Sbjct: 171 LREKRQTLLFTATMSDEISKLSSSILKRPKTIRTAEKY---ETVP-ALKEYYLFVAMKWK 226
Query: 405 LVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTAR 464
L L S IVF+S + TAR
Sbjct: 227 NSALVELL-----------EMSQGMSVIVFVS----------------------MCVTAR 253
Query: 465 LLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDV 524
+++ + L ++ LHG LSQ+ R ++ F + + +L CTD+
Sbjct: 254 VMSLALARLGFCSEA---------LHGELSQEKREEAMRSF------KESRFNVLVCTDL 298
Query: 525 ASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESL 566
SRGLD+ HV VI D P + +D++HR+GRTARAG G ++
Sbjct: 299 GSRGLDISHVDLVINFDVPKSGKDYIHRVGRTARAGRSGTAI 340
>At1g71370 [A] KOG0345 ATP-dependent RNA helicase
Length = 558
Score = 149 bits (377), Expect = 1e-35
Identities = 135/513 (26%), Positives = 230/513 (44%), Gaps = 101/513 (19%)
Query: 183 PFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVTPTRELANQIY 242
PFL + D+ + A TGSGKTLAFLLP + I + ++++PTREL+ QI+
Sbjct: 48 PFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIH 107
Query: 243 QVTSELAQCCHFLVPCLLIGGERKKSEKARL-RKGANFIIGTPGRVLDHLQNTKVIKEQL 301
+V + LL+GG +++ L +GAN +IGTPGR+ D ++ + + +
Sbjct: 108 KVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEGANLLIGTPGRLSDMMKRMEFLDFR- 166
Query: 302 APSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGN 361
+L ++LDE D+L+++GF++ + I++ +LPK+ L SAT
Sbjct: 167 --NLEILILDEADRLLDMGFQKQVNYIIS-------------RLPKQRRTGLFSATQTQA 211
Query: 362 VTKLGNVTLQN-YKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHY 420
V L L+N ++IS + +++T++ K +LV L I K+
Sbjct: 212 VADLAKAGLRNAMEVISGAESKSKTSSGLYCEYLKCEADQKSSQLVHL-----LIENKNK 266
Query: 421 KEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTD 480
K + F++C+ VD+ V S +P
Sbjct: 267 K--------LVVFFMTCA-CVDYWGLVLSK----------------------IPTLK--- 292
Query: 481 DPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEM 540
++ + HG + Q+ R L F +A+ G +L CTDVA+RGLD+P + V++
Sbjct: 293 --SISFFSTHGKMDQKGRDTALASF---TEASSG---VLLCTDVAARGLDIPGIDYVVQY 344
Query: 541 DPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEEEGYMDYIKPYHPKGWKLLTYDEQVLR 600
DPP + +HR+GRTAR +G +++FL+P E DY+
Sbjct: 345 DPPQDPDVFIHRVGRTARMERQGRAIVFLMPKE----TDYV------------------- 381
Query: 601 PAFEGLNVRRTDKKKEDWDKHEAQAWDNNATTWHLNVERRVIEDSHFKELAVKGYMSHIR 660
E + +RR ++ + NA+ + I+D E ++ ++S +R
Sbjct: 382 ---EFMRIRRVPLQE--------RKCSENASDVIPIIRSLAIKDRAVLEKGLQAFVSFVR 430
Query: 661 AYATHLSIEKKFFNLKCLHLGHLAKSFALRERP 693
AY H F+ K L +G LA + + P
Sbjct: 431 AYKEHHC--SYIFSWKGLEIGKLAMGYGILSFP 461
>Hs13514813 [A] KOG0335 ATP-dependent RNA helicase
Length = 662
Score = 149 bits (376), Expect = 2e-35
Identities = 132/479 (27%), Positives = 220/479 (45%), Gaps = 85/479 (17%)
Query: 104 TQPLQLNSQIVSSLFTSSRNIDTVTNSNAHDE-KAEVTYSNAPLVGDTFDSFGITDTMVS 162
++PL + ++ LF+ +T N +D+ E T +N P ++F + + ++
Sbjct: 137 SKPLPPSERLEQELFSGG---NTGINFEKYDDIPVEATGNNCPPHIESFSDVEMGEIIMG 193
Query: 163 HLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQ---- 218
++ + + ++PT +QK IP ++ + DL AQTGSGKT AFLLPI I S G
Sbjct: 194 NIELT-RYTRPTPVQKHAIP-IIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEAL 251
Query: 219 NITRQSGCF--------ALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEK 270
+++G + +LV+ PTRELA QIY+ + + + PC++ GG +
Sbjct: 252 RAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSR-VRPCVVYGGADIGQQI 310
Query: 271 ARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILN 330
L +G + ++ TPGR++D ++ K+ + +Y+VLDE D+++++GFE ++ I
Sbjct: 311 RDLERGCHLLVATPGRLVDMMERGKIGLD----FCKYLVLDEADRMLDMGFEPQIRRI-- 364
Query: 331 IIHGIDIDTHQFPKLPKRILH-VLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVP 389
++ DT PK + H ++ SAT + L L Y ++ G+ +
Sbjct: 365 ----VEQDTMP----PKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR----VGSTS 412
Query: 390 DQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFS 449
+ + QK+V V + L L + + T+VF+ D E F
Sbjct: 413 ENITQKVVWVEESDKRSFLLDLLNATGKD----------SLTLVFVETKKGAD-SLEDFL 461
Query: 450 SHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNN 509
H+G C +HG SQ+ R L F +
Sbjct: 462 YHEG------------------------------YACTSIHGDRSQRDREEALHQFRS-- 489
Query: 510 DATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLF 568
GK IL T VA+RGLD+ +V VI D P +E+++HRIGRT R G G + F
Sbjct: 490 ----GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSF 544
>CE28031 [A] KOG0334 RNA helicase
Length = 747
Score = 149 bits (375), Expect = 2e-35
Identities = 132/426 (30%), Positives = 200/426 (45%), Gaps = 68/426 (15%)
Query: 150 TFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPI 209
T+ G+ M++ L K + SKPT IQ IP + ++ + I A+TGSGKTLAFLLP+
Sbjct: 305 TWAQCGVNLKMMNVLK-KFEYSKPTSIQAQAIPSIMSGRDVIGI-AKTGSGKTLAFLLPM 362
Query: 210 FQSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSE 269
F+ IL + + G A+++ PTRELA Q Y+ ++ A+ V C GG +
Sbjct: 363 FRHILDQPE-LEEGDGPIAVILAPTRELAMQTYKEANKFAKPLGLKVACTY-GGVGISEQ 420
Query: 270 KARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEIL 329
A L++GA ++ TPGR++D L L + Y+VLDE D++ + GFE + +++
Sbjct: 421 IADLKRGAEIVVCTPGRMIDVLAANSGKVTNLR-RVTYLVLDEADRMFDKGFEPQIMKVV 479
Query: 330 NIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVP 389
N I D T VL SAT ++ L L I G K + V
Sbjct: 480 NNIRP-DKQT------------VLFSATFPRHMEALARKVLDKPVEILVGGK----SVVC 522
Query: 390 DQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFS 449
+ Q VI + + L + +Y+EGS +IVF+ + D
Sbjct: 523 SDITQNAVICAEHQKFL----KLLELLGMYYEEGS------SIVFVDKQEKAD------- 565
Query: 450 SHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNN 509
+V R T NS+ P LHG + Q R +++ F T
Sbjct: 566 -------DIVDQLMR--TGYNSVAP--------------LHGGIDQHDRDSSIADFKT-- 600
Query: 510 DATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFL 569
G +L T VA+RGLD+ ++ V+ D P ED++HR+GRT RAG +G + F+
Sbjct: 601 ----GVIKVLVATSVAARGLDVKNLILVVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTFV 656
Query: 570 LPGEEE 575
LP +E
Sbjct: 657 LPEHQE 662
>CE27427 [A] KOG0334 RNA helicase
Length = 970
Score = 149 bits (375), Expect = 2e-35
Identities = 132/426 (30%), Positives = 200/426 (45%), Gaps = 68/426 (15%)
Query: 150 TFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPI 209
T+ G+ M++ L K + SKPT IQ IP + ++ + I A+TGSGKTLAFLLP+
Sbjct: 305 TWAQCGVNLKMMNVLK-KFEYSKPTSIQAQAIPSIMSGRDVIGI-AKTGSGKTLAFLLPM 362
Query: 210 FQSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSE 269
F+ IL + + G A+++ PTRELA Q Y+ ++ A+ V C GG +
Sbjct: 363 FRHILDQPE-LEEGDGPIAVILAPTRELAMQTYKEANKFAKPLGLKVACTY-GGVGISEQ 420
Query: 270 KARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEIL 329
A L++GA ++ TPGR++D L L + Y+VLDE D++ + GFE + +++
Sbjct: 421 IADLKRGAEIVVCTPGRMIDVLAANSGKVTNLR-RVTYLVLDEADRMFDKGFEPQIMKVV 479
Query: 330 NIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVP 389
N I D T VL SAT ++ L L I G K + V
Sbjct: 480 NNIRP-DKQT------------VLFSATFPRHMEALARKVLDKPVEILVGGK----SVVC 522
Query: 390 DQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFS 449
+ Q VI + + L + +Y+EGS +IVF+ + D
Sbjct: 523 SDITQNAVICAEHQKFL----KLLELLGMYYEEGS------SIVFVDKQEKAD------- 565
Query: 450 SHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNN 509
+V R T NS+ P LHG + Q R +++ F T
Sbjct: 566 -------DIVDQLMR--TGYNSVAP--------------LHGGIDQHDRDSSIADFKT-- 600
Query: 510 DATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFL 569
G +L T VA+RGLD+ ++ V+ D P ED++HR+GRT RAG +G + F+
Sbjct: 601 ----GVIKVLVATSVAARGLDVKNLILVVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTFV 656
Query: 570 LPGEEE 575
LP +E
Sbjct: 657 LPEHQE 662
>SPBC691.04 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 535
Score = 148 bits (374), Expect = 3e-35
Identities = 125/412 (30%), Positives = 198/412 (47%), Gaps = 63/412 (15%)
Query: 172 KPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVV 231
K T +Q+ V+ + + + A+TG+GKTLAFLL F+ +L G+ S ++++
Sbjct: 60 KMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLK-GKPRLNSSKIHSVIL 118
Query: 232 TPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLDHL 291
+PTRELA QI++ +L V + G + + E A R AN +I TPGR+ DHL
Sbjct: 119 SPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRLEDHL 178
Query: 292 QNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRILH 351
QN ++++ S +LDE D+LM++GF E+ ILNI + T + KL
Sbjct: 179 QNPRILESLSTDSF---ILDEADRLMDMGFAES---ILNIHEA--VTTTKTRKL------ 224
Query: 352 VLCSATVKGNVTKLGNVTL-QNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAG 410
SAT+ V+ + L ++KLI+ + P ++ KL V +
Sbjct: 225 -CFSATMPPKVSNVFRGILGTDFKLINC----LDPNEPPTHERVPQFVIETKLDKV-FSS 278
Query: 411 SLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGN 470
SL+ + Q S + +R IVFL VDF V +H
Sbjct: 279 SLSLLQQL----TSSNPSSRIIVFLPTISMVDFVGGVLENH------------------- 315
Query: 471 SILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLD 530
+ C+ LH L+ R + + F K + ILF TDV +RG+D
Sbjct: 316 -----------LKIPCFILHSGLTTAQRRSITESF------RKCQSGILFATDVVARGMD 358
Query: 531 LPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEEEGYMDYIK 582
P+++ V+++ P +D++HRIGRT RAG GE+ L LL +E+ +++ IK
Sbjct: 359 FPNITQVVQITGPSNTDDYIHRIGRTGRAGKTGEAYLILLE-QEKPFLNSIK 409
>Hs13129006 [A] KOG0331 ATP-dependent RNA helicase
Length = 737
Score = 148 bits (373), Expect = 3e-35
Identities = 150/553 (27%), Positives = 251/553 (45%), Gaps = 86/553 (15%)
Query: 37 DRRKAKMMM---EGRKPRVRGEKRPLESDGAPTFEELEASSSNSTSAQAPVEPKRSRFDN 93
DRRK++ E + R G L++ A + E + ++ + + S+
Sbjct: 31 DRRKSRHHYDSDEKSETRENGVTDDLDAPKAKKSKMKEKLNGDTEEGFNRLSDEFSKSHK 90
Query: 94 SSNVEQPARVTQPLQLNSQIVSSLFTSSRNIDTVTNSNAHDEKAEVTYSNAPLVGDTFDS 153
S + P + S+ VSSL TS+ + D K E T + G F +
Sbjct: 91 SRRKDLPNGDIDEYEKKSKRVSSLDTSTHK--------SSDNKLEETLTREQKEG-AFSN 141
Query: 154 FGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSI 213
F I++ + L + ++ IQ P + + DL A+TG+GKT +F +P+ + +
Sbjct: 142 FPISEETIKLLKGR-GVTYLFPIQVKTFGPVYEGK-DLIAQARTGTGKTFSFAIPLIERL 199
Query: 214 LSLGQNITRQSGCFALVVTPTRELANQIYQ----VTSELAQCCHFLVPCLLIGGERKKSE 269
+ I + LV+ PTRELANQ+ + +T +L+ C + GG +S+
Sbjct: 200 QRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFY-------GGTSYQSQ 252
Query: 270 KARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEIL 329
+R G + ++GTPGR+ DHLQ+ ++ + LR+VVLDE D++++LGF E +++I+
Sbjct: 253 INHIRNGIDILVGTPGRIKDHLQSGRLDLSK----LRHVVLDEVDQMLDLGFAEQVEDII 308
Query: 330 NIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVP 389
+ + D + + P+ +L SAT V K+ K + S +Q + +
Sbjct: 309 HESYKTDSEDN-----PQTLLF---SATCPQWVYKVAK------KYMKSRYEQVD---LV 351
Query: 390 DQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFS 449
++ QK L + Q H+ + + V ++ +V+S
Sbjct: 352 GKMTQKAATTVEHLAI-----------QCHWSQ--RPAVIGDVL------------QVYS 386
Query: 450 SHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNN 509
+G R ++ TK N N N C LHG ++Q R TLK F
Sbjct: 387 GSEG--RAII----FCETKKNVTEMAMNPHIKQNAQC--LHGDIAQSQREITLKGF---- 434
Query: 510 DATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFL 569
+G +L T+VA+RGLD+P V VI+ PP VE ++HR GRT RAG G + F
Sbjct: 435 --REGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFY 492
Query: 570 LPGEEEGYMDYIK 582
P E G + Y++
Sbjct: 493 QP-RERGQLRYVE 504
>7299061 [A] KOG0335 ATP-dependent RNA helicase
Length = 798
Score = 148 bits (373), Expect = 3e-35
Identities = 146/541 (26%), Positives = 237/541 (42%), Gaps = 80/541 (14%)
Query: 40 KAKMMMEGRKPRVRGEKRPLESDGAPTFEELEASSSNSTSAQAPVEPKRSRFDNS--SNV 97
+A+ + R R + +RP DG+ + + S + + SR+ SNV
Sbjct: 190 QAQQQQQPRNDRWQEPERPAGFDGSEGGQSAGGNRSYNNRGERGGGGYNSRWKEGGGSNV 249
Query: 98 EQPARVTQPLQLNSQIVSSLFTSSRNIDTVTNSNAHDEKAEVTYSNAPLVGDTFDSFGIT 157
+ + +L ++ + + N D D E T N P +FD +T
Sbjct: 250 DYTKLGARDERLEVELFG-VGNTGINFDKY-----EDIPVEATGQNVPPNITSFDDVQLT 303
Query: 158 DTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLG 217
+ + +++ + + KPT +QK IP + + DL AQTGSGKT AFL+PI + LG
Sbjct: 304 EIIRNNVALA-RYDKPTPVQKHAIPIIINGR-DLMACAQTGSGKTAAFLVPILNQMYELG 361
Query: 218 ---------QNITRQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKS 268
Q R+ LV+ PTRELA QI++ + A + P +L GG
Sbjct: 362 HVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSR-MRPAVLYGGNNTSE 420
Query: 269 EKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEI 328
+ L +G + I+ TPGR+ D + KV E ++R++VLDE D+++++GFE ++ I
Sbjct: 421 QMRELDRGCHLIVATPGRLEDMITRGKVGLE----NIRFLVLDEADRMLDMGFEPQIRRI 476
Query: 329 LNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTV 388
++ P +R ++ SAT + +L + L NY ++ G+ + + +
Sbjct: 477 --------VEQLNMPPTGQR-QTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENI 527
Query: 389 PDQLLQKIVIVPPKLR-LVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEV 447
+L V P K L+ L S+ + E +K + T++F+ D E
Sbjct: 528 TQTILW--VYEPDKRSYLLDLLSSI-----RDGPEYTKDSL--TLIFVETKKGADSLEEF 578
Query: 448 FSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFAT 507
+ NH +HG +Q+ R L+ F +
Sbjct: 579 L--YQCNHP-----------------------------VTSIHGDRTQKEREEALRCFRS 607
Query: 508 NNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLL 567
G IL T VA+RGLD+PHV VI D P VE+++HRIGRT R G G +
Sbjct: 608 ------GDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATS 661
Query: 568 F 568
F
Sbjct: 662 F 662
>7295314 [A] KOG0331 ATP-dependent RNA helicase
Length = 811
Score = 146 bits (369), Expect = 1e-34
Identities = 131/414 (31%), Positives = 191/414 (45%), Gaps = 71/414 (17%)
Query: 151 FDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIF 210
F+ G D +++ + K +KPT IQ P + + DL AQTGSGKTLA++LP
Sbjct: 152 FEEGGFPDYVMNEIR-KQGFAKPTAIQAQGWPIAMSGR-DLVGVAQTGSGKTLAYVLPAV 209
Query: 211 QSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEK 270
I + + + R G ALV+ PTRELA QI QV E H C + GG K +
Sbjct: 210 VHINNQPR-LERGDGPIALVLAPTRELAQQIQQVAIEFGSNTHVRNTC-IFGGAPKGQQA 267
Query: 271 ARLRKGANFIIGTPGRVLDHLQ-NTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEIL 329
L +G +I TPGR++D L+ T +K Y+VLDE D+++++GFE +++I+
Sbjct: 268 RDLERGVEIVIATPGRLIDFLERGTTSLKR-----CTYLVLDEADRMLDMGFEPQIRKIM 322
Query: 330 NIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVP 389
I P R + ++ SAT V +L L NY ++ G + + +
Sbjct: 323 QQIR------------PDRQV-LMWSATWPKEVRQLAEEFLNNYIQVNIG---SLSLSAN 366
Query: 390 DQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFS 449
+LQ + + +L+ L LT I S + T+TI+F+ VD E+
Sbjct: 367 HNILQIVDVCDENEKLMKLIKLLTDI--------SAENETKTIIFVETKKRVD---EI-- 413
Query: 450 SHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNN 509
T + +G +HG SQQ R L F
Sbjct: 414 ------------TRNISRQGWR--------------ACAIHGDKSQQERDFVLSSF---- 443
Query: 510 DATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEG 563
G+H IL TDVA+RGLD+ V VI D P ED++HRIGRT R+ G
Sbjct: 444 --RNGRHSILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTG 495
>YLL008w [A] KOG0338 ATP-dependent RNA helicase
Length = 752
Score = 146 bits (368), Expect = 1e-34
Identities = 144/553 (26%), Positives = 239/553 (43%), Gaps = 105/553 (18%)
Query: 38 RRKA---KMMMEGRKPRVRGEKRPLESDGAPTFEELEA---------SSSNSTSAQAPVE 85
RRK KM K EK +E + EEL ++ + ++ E
Sbjct: 115 RRKGGLVKMAHIDSKQEEETEKEKVEKENDSDDEELAMDGFGMGAPMNNGDENQSEEEEE 174
Query: 86 PKRSRFDNSSNVEQPARVTQPLQLNSQIVSSLFTSSRNIDTVTNSNAHDEKAEVTYSNAP 145
+ + EQ + + +I + D DE + Y N
Sbjct: 175 EEEKEEEEEEEEEQEEMTLEKGGKDDEIDEEDDSEEAKADFYAPETEGDEAKKQMYEN-- 232
Query: 146 LVGDTFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAF 205
F+S ++ ++ L + KP+ IQ IP L + D+ A TGSGKT AF
Sbjct: 233 -----FNSLSLSRPVLKGL-ASLGYVKPSPIQSATIPIALLGK-DIIAGAVTGSGKTAAF 285
Query: 206 LLPIFQSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGER 265
++PI + +L I +V+ PTRELA Q+ V ++A+ + L +GG
Sbjct: 286 MIPIIERLLYKPAKIASTR---VIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLN 342
Query: 266 KKSEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETL 325
+ ++ L+ + +I TPGR +DH++N+ S+ +V+DE D+++E GF++ L
Sbjct: 343 LRQQEQMLKSRPDIVIATPGRFIDHIRNSASFN---VDSVEILVMDEADRMLEEGFQDEL 399
Query: 326 KEILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQN-YKLISSGQKQTE 384
EI+ + LP ++L SAT+ + L +++L+ +++ K+
Sbjct: 400 NEIMGL-------------LPSNRQNLLFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAA 446
Query: 385 TTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFH 444
T +L Q+ V + + L L + +K G K R +VF++ ++
Sbjct: 447 T-----KLTQEFVRIRKRDHL--KPALLFNLIRKLDPTGQK----RIVVFVARKETA--- 492
Query: 445 YEVFSSHDGNHR-----GLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRT 499
HR GL+G + +LHGSL+Q+ R
Sbjct: 493 ----------HRLRIIMGLLGMSVG-----------------------ELHGSLTQEQRL 519
Query: 500 ATLKHFATNNDATKGKHL---ILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRT 556
++ F K+L +L CTD+ASRGLD+P + VI D P + E +LHR+GRT
Sbjct: 520 DSVNKF---------KNLEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRT 570
Query: 557 ARAGCEGESLLFL 569
ARAG EG S+ F+
Sbjct: 571 ARAGREGRSVTFV 583
>YFL002c [A] KOG0345 ATP-dependent RNA helicase
Length = 606
Score = 145 bits (367), Expect = 2e-34
Identities = 142/530 (26%), Positives = 225/530 (41%), Gaps = 103/530 (19%)
Query: 174 TKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITR--QSGCFALVV 231
T +Q IP L D+ + + TGSGKT AF++P+ + ++ N ++ ++ +L++
Sbjct: 31 TPVQASTIP-MLAGNKDVVVDSVTGSGKTAAFVIPVLEKVVKEEANTSKFKKAHFHSLII 89
Query: 232 TPTRELANQIYQVTSELAQCCH---FLVPCLLIGGERKKSEKAR----LRKGANFIIGTP 284
PTREL+ QI V + F + C L+ G + + + LR +IGTP
Sbjct: 90 APTRELSRQIESVVLSFLEHYPSDLFPIKCQLLVGTNEATVRDDVSNFLRNRPQILIGTP 149
Query: 285 GRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPK 344
GRVLD LQ V + VV+DE D+L+++ F + ++IL +
Sbjct: 150 GRVLDFLQMPAV----KTSACSMVVMDEADRLLDMSFIKDTEKILRL------------- 192
Query: 345 LPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLR 404
LPK+ L SAT++ + + L+N I+ K P L +V P +
Sbjct: 193 LPKQRRTGLFSATMRSAGSDIFKTGLRNPVRITVNSKNQ----APSSLKLNYCVVNPAEK 248
Query: 405 LVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTAR 464
L L L K + IV+ SV + Y F + G LV +
Sbjct: 249 LQLLVSILNNYKFK-----------KCIVYFPTCVSVSYFYS-FIQYLGKRNILVNE--- 293
Query: 465 LLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDV 524
V + LHG L RT TL F + + +LF TDV
Sbjct: 294 -------------------VEIFSLHGKLQTSARTKTLTAFTDSLSNS-----VLFTTDV 329
Query: 525 ASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEEEGYMDYIKPY 584
A+RG+D+P V VI++DPP + +HR GRT RA G+++ FL G EE D+I
Sbjct: 330 AARGIDIPDVDLVIQLDPPTNTDMFMHRCGRTGRANRVGKAITFLNEGREE---DFIPFM 386
Query: 585 HPKGWKLLTYDEQVLRPAFEGLNVRRTDKKKEDWDKHEAQAWDNNATTWHLNVERRVIED 644
K +L D +V +G+ T ++ + ++ED
Sbjct: 387 QVKNVELEELDLEV-----KGI-----------------------TTNFYEDFRNWILED 418
Query: 645 SHFKELAVKGYMSHIRAYATHLSIEKKFFNLKCLHLGHLAKSFALRERPK 694
+ VK Y++ I+ Y+ H + F L+ L +AK + L P+
Sbjct: 419 RDRFDKGVKAYVAFIKYYSNHSA--TSIFRLQSLDYVGIAKLYGLFRLPR 466
>SPAC823.08c [A] KOG0330 ATP-dependent RNA helicase
Length = 465
Score = 145 bits (366), Expect = 2e-34
Identities = 138/476 (28%), Positives = 208/476 (42%), Gaps = 98/476 (20%)
Query: 110 NSQIVSSLFTSSRNIDTVTNSNAHDEKAEVTYSNAPLVGDTFDSFGITDTMVSHLNVKMK 169
NS + + TS+ + + + +N D + + AP TF G+ D + K+
Sbjct: 14 NSSLNKKIETSNSSSEKSSENNNGDSQN----NEAP---KTFKELGVIDELCEACE-KLG 65
Query: 170 ISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFAL 229
PT IQ+ IP L + D+ AQTGSGKT AF LP+ Q + + S FA+
Sbjct: 66 FKTPTPIQQEAIPVVLN-KRDVIGLAQTGSGKTAAFALPVIQELWN------NPSPFFAV 118
Query: 230 VVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLD 289
V+ PTRELA QI + + + +++GG ++ L K + ++ TPGR++D
Sbjct: 119 VLAPTRELAYQISEQFEAIGGSIG-VRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLMD 177
Query: 290 HLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRI 349
HL+NTK +L+Y+++DE D+L+++ F + +IL II P
Sbjct: 178 HLENTKGFS---LKNLKYLIMDEADRLLDMDFGPIIDKILKII-------------PHER 221
Query: 350 LHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLR---LV 406
+L SAT+ V KL +L ++ K + D L+Q+ + P K + LV
Sbjct: 222 RTLLFSATMTSKVEKLQRASLHQPVRVAVSSK----FSTVDTLIQRYLFFPFKHKDTYLV 277
Query: 407 TLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLL 466
L L I+F V DT RL
Sbjct: 278 YLVNELAG--------------NSIIIFAR---------------------TVNDTQRLA 302
Query: 467 ----TKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCT 522
T G S +P LHG LSQ R L F + G L T
Sbjct: 303 ILLRTLGFSAIP--------------LHGQLSQSNRLGALNKFKS------GARSTLVAT 342
Query: 523 DVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEEEGYM 578
DVA+RGLD+P V VI D P + ++HR+GRTARAG G+S+ + + E ++
Sbjct: 343 DVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVTQYDLEPFL 398
>At3g06480 [A] KOG0331 ATP-dependent RNA helicase
Length = 1088
Score = 145 bits (365), Expect = 3e-34
Identities = 134/475 (28%), Positives = 214/475 (44%), Gaps = 74/475 (15%)
Query: 110 NSQIVSSLFTSSRNIDTVTNSNAHDEKAEVTYS--NAPLVGDTFDSFGITDTMVSHLNVK 167
N +V F +S ++ ++ + ++ EVT + N P TF+S G+ ++ L +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEIYRKQHEVTTTGENIPAPYITFESSGLPPEILREL-LS 452
Query: 168 MKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCF 227
PT IQ P LQ++ D+ A+TGSGKTL +L+P F +L +N +R +G
Sbjct: 453 AGFPSPTPIQAQTWPIALQSR-DIVAIAKTGSGKTLGYLIPAF-ILLRHCRNDSR-NGPT 509
Query: 228 ALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRV 287
L++ PTRELA QI + CL GG K + L +GA+ ++ TPGR+
Sbjct: 510 VLILAPTRELATQIQDEALRFGRSSRISCTCLY-GGAPKGPQLKELERGADIVVATPGRL 568
Query: 288 LDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPK 347
D L+ + +Q++ +VLDE D+++++GFE +++I+N ++P
Sbjct: 569 NDILEMKMIDFQQVS----LLVLDEADRMLDMGFEPQIRKIVN-------------EIPP 611
Query: 348 RILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVT 407
R ++ +AT V K+ + L N ++ G + + + Q + +VP +
Sbjct: 612 RRQTLMYTATWPKEVRKIASDLLVNPVQVNIG--RVDELAANKAITQYVEVVPQMEKERR 669
Query: 408 LAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLT 467
L L + + GSK I+F S D + G H G V
Sbjct: 670 LEQIL-----RSQERGSK-----VIIFCSTKRLCDH----LARSVGRHFGAV-------- 707
Query: 468 KGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASR 527
+HG +Q R L F + GK +L TDVA+R
Sbjct: 708 --------------------VIHGDKTQGERDWVLNQFRS------GKSCVLIATDVAAR 741
Query: 528 GLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEEEGYMDYIK 582
GLD+ + VI D P VED++HRIGRT RAG G + F + + D IK
Sbjct: 742 GLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTEQDWKYAPDLIK 796
>CE26887 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 730
Score = 144 bits (364), Expect = 4e-34
Identities = 123/423 (29%), Positives = 200/423 (47%), Gaps = 73/423 (17%)
Query: 172 KPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQ---NITRQSGCFA 228
+PT IQ+ IP LQ D+ A+TGSGKT AFLLP+ I SL + R G +A
Sbjct: 323 EPTPIQRQAIPIGLQ-NRDVIGVAETGSGKTAAFLLPLLVWITSLPKMERQEHRDLGPYA 381
Query: 229 LVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVL 288
+++ PTRELA QI + T++ + + +IGG ++ + +LR G +I TPGR+L
Sbjct: 382 IIMAPTRELAQQIEEETNKFGKLLG-IKTVSVIGGASREDQGMKLRMGVEVVIATPGRLL 440
Query: 289 DHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDI--DTHQFPK-- 344
D L+N ++ Q YV+LDE D+++++GFE ++++L + ++ DT +F
Sbjct: 441 DVLENRYLLLNQCT----YVILDEADRMLDMGFEPDVQKVLEYMPDTNMKKDTDEFDNEE 496
Query: 345 --------LPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKI 396
K V+ +AT+ + +L L+ ++ G + P + ++++
Sbjct: 497 ALMKGFSTREKYRQTVMFTATMSSAIERLARQYLRRPAVVHIG-----SAGKPTERVEQV 551
Query: 397 VIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHR 456
V + P+ R L + + ++ I+F++ D
Sbjct: 552 VYMVPEDR---KRKKLVEVLESQFQ-------PPIIIFVNQKKGAD-------------- 587
Query: 457 GLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKH 516
+L+KG + L F T LHG Q R L+ +G
Sbjct: 588 --------MLSKGLTKLG-FKPT--------VLHGGKGQDQREYALQAL------KEGTS 624
Query: 517 LILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEEEG 576
IL TDVA RG+D+ VS V+ D ++ED+ HRIGRT RAG G+++ FL P +
Sbjct: 625 DILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHRIGRTGRAGKHGKAITFLTPDDTAV 684
Query: 577 YMD 579
Y D
Sbjct: 685 YFD 687
>CE24878 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 769
Score = 144 bits (364), Expect = 4e-34
Identities = 123/423 (29%), Positives = 200/423 (47%), Gaps = 73/423 (17%)
Query: 172 KPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQ---NITRQSGCFA 228
+PT IQ+ IP LQ D+ A+TGSGKT AFLLP+ I SL + R G +A
Sbjct: 323 EPTPIQRQAIPIGLQ-NRDVIGVAETGSGKTAAFLLPLLVWITSLPKMERQEHRDLGPYA 381
Query: 229 LVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVL 288
+++ PTRELA QI + T++ + + +IGG ++ + +LR G +I TPGR+L
Sbjct: 382 IIMAPTRELAQQIEEETNKFGKLLG-IKTVSVIGGASREDQGMKLRMGVEVVIATPGRLL 440
Query: 289 DHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDI--DTHQFPK-- 344
D L+N ++ Q YV+LDE D+++++GFE ++++L + ++ DT +F
Sbjct: 441 DVLENRYLLLNQCT----YVILDEADRMLDMGFEPDVQKVLEYMPDTNMKKDTDEFDNEE 496
Query: 345 --------LPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKI 396
K V+ +AT+ + +L L+ ++ G + P + ++++
Sbjct: 497 ALMKGFSTREKYRQTVMFTATMSSAIERLARQYLRRPAVVHIG-----SAGKPTERVEQV 551
Query: 397 VIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHR 456
V + P+ R L + + ++ I+F++ D
Sbjct: 552 VYMVPEDR---KRKKLVEVLESQFQ-------PPIIIFVNQKKGAD-------------- 587
Query: 457 GLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKH 516
+L+KG + L F T LHG Q R L+ +G
Sbjct: 588 --------MLSKGLTKLG-FKPT--------VLHGGKGQDQREYALQAL------KEGTS 624
Query: 517 LILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEEEG 576
IL TDVA RG+D+ VS V+ D ++ED+ HRIGRT RAG G+++ FL P +
Sbjct: 625 DILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHRIGRTGRAGKHGKAITFLTPDDTAV 684
Query: 577 YMD 579
Y D
Sbjct: 685 YFD 687
>YDR194c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 664
Score = 144 bits (362), Expect = 6e-34
Identities = 124/433 (28%), Positives = 203/433 (46%), Gaps = 60/433 (13%)
Query: 150 TFDSF---GITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQN-DLFIHAQTGSGKTLAF 205
T DS G+ D + +M+ T +Q+ I P L +++ D+ A+TG+GKT AF
Sbjct: 103 TLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAF 162
Query: 206 LLPIFQSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQCCHFL--VPCL-LIG 262
L+PIFQ +++ Q A++V PTR+LA QI ++ + L C+ L+G
Sbjct: 163 LIPIFQHLIN--TKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVG 220
Query: 263 GERKKSEKARLRK-GANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGF 321
G ++ ++ K N +I TPGR++D L+ + + Y VLDE D+L+E+GF
Sbjct: 221 GTDFRAAMNKMNKLRPNIVIATPGRLIDVLEK---YSNKFFRFVDYKVLDEADRLLEIGF 277
Query: 322 EETLKEILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQK 381
+ L+ I I++ + K I +L SAT+ V KL N + + +
Sbjct: 278 RDDLETISGILN------EKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTV 331
Query: 382 QTETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSV 441
+++ Q +VI A S+ + H K+ K
Sbjct: 332 DKNEPEAHERIDQSVVISE------KFANSIFAAVE-HIKKQIK---------------- 368
Query: 442 DFHYEVFSSHDGNHRGLV-GDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTA 500
D N++ ++ T + + SIL D P + HG ++Q RT+
Sbjct: 369 --------ERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLP---ILEFHGKITQNKRTS 417
Query: 501 TLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAG 560
+K F K + IL CTDV +RG+D P+V V+++ P + +++HRIGRTAR+G
Sbjct: 418 LVKRF------KKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSG 471
Query: 561 CEGESLLFLLPGE 573
EG S+LF+ E
Sbjct: 472 KEGSSVLFICKDE 484
>7290853 [A] KOG0331 ATP-dependent RNA helicase
Length = 945
Score = 142 bits (359), Expect = 1e-33
Identities = 126/419 (30%), Positives = 188/419 (44%), Gaps = 70/419 (16%)
Query: 159 TMVSHLNVKMK---ISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILS 215
++ +H+ +MK +KPT IQ P L + DL AQTGSGKTLA++LP +I+
Sbjct: 243 SLPAHVIEEMKRQGFTKPTAIQSQGWPIALSGR-DLVGIAQTGSGKTLAYMLP---AIVH 298
Query: 216 LGQN--ITRQSGCFALVVTPTRELANQIYQVTSELAQCCH-FLVPCLLIGGERKKSEKAR 272
+G I R G ALV+ PTRELA QI V + C + + GG K +
Sbjct: 299 IGNQPPIIRGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQARD 358
Query: 273 LRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNII 332
L +G II TPGR++D L+N ++ Y+VLDE D+++++GFE +++I+ I
Sbjct: 359 LDRGVEVIIATPGRLIDFLENRNTNLQRCT----YLVLDEADRMLDMGFEPQIRKIIEQI 414
Query: 333 HGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQL 392
P R + V+ SAT V L L +Y I+ G Q+
Sbjct: 415 R------------PDRQV-VMWSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQI 461
Query: 393 LQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHD 452
++ + RLV L ++ I + S ++ + IVF+ V+ ++ +
Sbjct: 462 VEICTEIEKPQRLVCLLNEISPI------KNSGNNGNKIIVFVETKIKVEDILQIIRAEG 515
Query: 453 GNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDAT 512
N +HG +Q R + LK F
Sbjct: 516 YN-------------------------------ATSIHGDKTQNERDSVLKDF------R 538
Query: 513 KGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLP 571
GK IL TDVASRGLD+ + VI D P + E+++HRIGRT R G + F P
Sbjct: 539 NGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFTP 597
>SPCC10H11.01 [A] KOG0334 RNA helicase
Length = 1014
Score = 142 bits (358), Expect = 2e-33
Identities = 129/432 (29%), Positives = 201/432 (45%), Gaps = 74/432 (17%)
Query: 155 GITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSIL 214
G++ +S +N + KPT IQ IP ++ + + A+TGSGKT+AFLLP+F+ I
Sbjct: 424 GLSAQTISVIN-SLGYEKPTSIQAQAIPAITSGRDVIGV-AKTGSGKTIAFLLPMFRHIK 481
Query: 215 SLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLR 274
+ + G A+++TPTRELA QI++ + + + C GG K + A L+
Sbjct: 482 D-QRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLN-IRACCAYGGAPIKDQIADLK 539
Query: 275 KGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHG 334
+GA ++ TPGR++D L + + Y+VLDE D++ +LGFE + I+N I
Sbjct: 540 RGAEIVVCTPGRMIDVL-SANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIR- 597
Query: 335 IDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQ 394
P R VL SAT + L L+ I+ G + + V +
Sbjct: 598 -----------PDR-QTVLFSATFPRAMEALARKVLKKPVEITVGGRSVVASEV-----E 640
Query: 395 KIVIVPPK----LRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSS 450
+IV V P+ RL+ L G L ++ DV RT+VF+ +S D
Sbjct: 641 QIVEVRPEESKFSRLLELLGEL---------YNNQLDV-RTLVFVDRQESAD-------- 682
Query: 451 HDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNND 510
L+ D + NSI HG Q R +T+ +D
Sbjct: 683 ------ALLSDLMKRGYTSNSI-----------------HGGKDQHDRDSTI------SD 713
Query: 511 ATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLL 570
G +L T V +RGLD+ + V+ D P +ED++HR+GRT RAG G ++ F+
Sbjct: 714 YKAGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFIT 773
Query: 571 PGEEEGYMDYIK 582
P +E+ +D K
Sbjct: 774 PEQEKYAVDIAK 785
>Hs7662318 [A] KOG0334 RNA helicase
Length = 1032
Score = 141 bits (356), Expect = 3e-33
Identities = 129/436 (29%), Positives = 195/436 (44%), Gaps = 73/436 (16%)
Query: 155 GITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSIL 214
GI+ +++ L K KPT IQ IP + + DL A+TGSGKT+AFLLP+F+ I+
Sbjct: 378 GISMKILNSLK-KHGYEKPTPIQTQAIPAIMSGR-DLIGIAKTGSGKTIAFLLPMFRHIM 435
Query: 215 SLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLR 274
+++ G A+++TPTRELA QI + + ++ V C + GG + A L+
Sbjct: 436 D-QRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVC-VYGGTGISEQIAELK 493
Query: 275 KGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHG 334
+GA I+ TPGR++D L L + YVVLDE D++ ++GFE +++ I+
Sbjct: 494 RGAEIIVCTPGRMIDMLAANSGRVTNLR-RVTYVVLDEADRMFDMGFE---PQVMRIVDN 549
Query: 335 IDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQ 394
+ D V+ SAT + L L + G + + V Q+
Sbjct: 550 VRPDRQT----------VMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQV-- 597
Query: 395 KIVIVPPK--LRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHD 452
IVI K L+L+ L G HY+E I+F+ + D
Sbjct: 598 -IVIEEEKKFLKLLELLG--------HYQESGS-----VIIFVDKQEHAD---------- 633
Query: 453 GNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDAT 512
GL+ D R + C LHG + Q R + + ND
Sbjct: 634 ----GLLKDLMR-----------------ASYPCMSLHGGIDQYDRDSII------NDFK 666
Query: 513 KGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPG 572
G +L T VA+RGLD+ H+ V+ P ED++HR GRT RAG +G + F+
Sbjct: 667 NGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITED 726
Query: 573 EEEGYMDYIKPYHPKG 588
+ D IK G
Sbjct: 727 QARYAGDIIKALELSG 742
>CE22474 [A] KOG0336 ATP-dependent RNA helicase
Length = 504
Score = 139 bits (351), Expect = 1e-32
Identities = 132/439 (30%), Positives = 196/439 (44%), Gaps = 72/439 (16%)
Query: 136 KAEVTYSNAPLVGDTFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHA 195
+ E T P V +FG +++ + K KP+ IQ + P L Q+ + + +
Sbjct: 71 REESTVKIPPPVNSFEQAFGSNASIMGEIR-KNGFEKPSPIQSQMWPLLLSGQDCIGV-S 128
Query: 196 QTGSGKTLAFLLPIFQSI-LSLGQ----NITRQSGCFALVVTPTRELANQIYQVTSELAQ 250
QTGSGKTLAFLLP I L Q + ++ F LV++PTRELA QI + +
Sbjct: 129 QTGSGKTLAFLLPALLHIDAQLAQYEKNDEEQKPSPFVLVLSPTRELAQQIEGEVKKYSY 188
Query: 251 CCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVL 310
+ V CL GG R + +A R G +I TPGR+ D L N VI S+ YVVL
Sbjct: 189 NGYKSV-CLYGGGSRPEQVEA-CRGGVEIVIATPGRLTD-LSNDGVIS---LASVTYVVL 242
Query: 311 DEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTL 370
DE D+++++GFE ++ IL F P R++ L SAT V KL +
Sbjct: 243 DEADRMLDMGFEVAIRRIL------------FEIRPDRLV-ALTSATWPEGVRKLTDKYT 289
Query: 371 QNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTR 430
+ + +G + Q + + LR+ + LT ++YK
Sbjct: 290 KEAVMAVNGSLDLTSCKSVTQFFEFVPHDSRFLRVCEIVNFLTAAHGQNYK--------- 340
Query: 431 TIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLH 490
I+F+ D F N +G LH
Sbjct: 341 MIIFVKSKVMADHLSSDFCMKGINSQG-------------------------------LH 369
Query: 491 GSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHL 550
G SQ R +L N G+ IL TD+ASRG+D+P ++ V+ D P +E+++
Sbjct: 370 GGRSQSDREMSL------NMLRSGEVQILVATDLASRGIDVPDITHVLNYDFPMDIEEYV 423
Query: 551 HRIGRTARAGCEGESLLFL 569
HR+GRT RAG +GE++ FL
Sbjct: 424 HRVGRTGRAGRKGEAMSFL 442
>At2g33730 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 733
Score = 139 bits (351), Expect = 1e-32
Identities = 118/414 (28%), Positives = 193/414 (46%), Gaps = 64/414 (15%)
Query: 172 KPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLG--QNITRQSGCFAL 229
KP+ IQ IP LQ Q D+ A+TGSGKT AF+LP+ I L G +A+
Sbjct: 335 KPSPIQMAAIPLGLQ-QRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAV 393
Query: 230 VVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLD 289
V+ PTRELA QI + T + A F V + +GG+ + + ++ +G +I TPGR++D
Sbjct: 394 VMAPTRELAQQIEEETVKFAHYLGFRVTSI-VGGQSIEEQGLKITQGCEIVIATPGRLID 452
Query: 290 HLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDI-DTHQFPKLPKR 348
L+ + Q YVVLDE D+++++GFE + +L+ + ++ ++ +L ++
Sbjct: 453 CLERRYAVLNQ----CNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPENEEEELDEK 508
Query: 349 ILH---VLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRL 405
++ + SAT+ V +L L+N +++ G T D + Q ++++ +
Sbjct: 509 KIYRTTYMFSATMPPGVERLARKYLRNPVVVTIGTAGKTT----DLISQHVIMMKESEKF 564
Query: 406 VTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARL 465
L L + +K IVF++ + D A+
Sbjct: 565 FRLQKLLDELGEK-----------TAIVFVNTKKNCD------------------SIAKN 595
Query: 466 LTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVA 525
L K + LHG SQ+ R +L+ F ++ +L TDV
Sbjct: 596 LDKAGYRVT-------------TLHGGKSQEQREISLEGFRAK------RYNVLVATDVV 636
Query: 526 SRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEEEGYMD 579
RG+D+P V+ VI D P +E + HRIGRT RAG G + FL + E + D
Sbjct: 637 GRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAGKSGVATSFLTLHDTEVFYD 690
>7304081 [A] KOG0338 ATP-dependent RNA helicase
Length = 782
Score = 139 bits (349), Expect = 2e-32
Identities = 132/413 (31%), Positives = 191/413 (45%), Gaps = 91/413 (22%)
Query: 173 PTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQN---ITRQSGCFAL 229
PT IQ IP L + D+ A TG+GKT A++LP + +L N ITR L
Sbjct: 180 PTPIQASTIPVALLGR-DICGCAATGTGKTAAYMLPTLERLLYRPLNNKAITR-----VL 233
Query: 230 VVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLD 289
V+ PTREL Q+YQVT +L Q V L IGG K+++A LR+ + +I TPGR++D
Sbjct: 234 VLVPTRELGAQVYQVTKQLCQFTTIDVG-LAIGGLDVKAQEAVLRQNPDIVIATPGRLID 292
Query: 290 HLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRI 349
H++NT S+ ++LDE D++++ F E +KEI+N K
Sbjct: 293 HIKNTPSF---TLDSIEVLILDEADRMLDEYFAEQMKEIIN-------------SCCKTR 336
Query: 350 LHVLCSATVKGNVTKLGNVTLQN-YKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTL 408
+L SAT+ V L V+L K+ + +Q V L Q+ + +
Sbjct: 337 QTMLFSATMSEQVKDLAAVSLDKPIKVFVNNNQQ-----VAFNLRQEFIRI--------- 382
Query: 409 AGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVF-SSHDGNHR-----GLVGDT 462
+ KEG + + +++ + D H VF + HR GL+G
Sbjct: 383 ---------REDKEGDREPILASLICRTFHD----HCMVFVQTKKQAHRLHILLGLLG-- 427
Query: 463 ARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCT 522
V +LHG+L+QQ R +LK F +L T
Sbjct: 428 ---------------------VRAGELHGNLTQQQRLESLKKFKEEQID------VLIAT 460
Query: 523 DVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEEE 575
DVA+RGLD+ V TVI P E ++HR+GRTARAG G S+ L GE+E
Sbjct: 461 DVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISV--SLAGEKE 511
>Hs5453840_1 [A] KOG0331 ATP-dependent RNA helicase
Length = 469
Score = 139 bits (349), Expect = 2e-32
Identities = 124/412 (30%), Positives = 185/412 (44%), Gaps = 68/412 (16%)
Query: 171 SKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALV 230
++PT IQ P L ++ + I AQTGSGKTLA+LLP I + + R G LV
Sbjct: 113 TEPTPIQCQGFPLALSGRDMVGI-AQTGSGKTLAYLLPAIVHI-NHQPYLERGDGPICLV 170
Query: 231 VTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLDH 290
+ PTRELA Q+ QV + +C C + GG K + L +G I TPGR++D
Sbjct: 171 LAPTRELAQQVQQVADDYGKCSRLKSTC-IYGGAPKGPQIRDLERGVEICIATPGRLIDF 229
Query: 291 LQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRIL 350
L++ K + Y+VLDE D+++++GFE +++I++ I P R
Sbjct: 230 LESGKTNLRRCT----YLVLDEADRMLDMGFEPQIRKIVDQIR------------PDR-Q 272
Query: 351 HVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAG 410
++ SAT V +L L++Y I+ G + Q++ + +L+ L
Sbjct: 273 TLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLME 332
Query: 411 SLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGN 470
+ + +K K TI+F+ D D R + +
Sbjct: 333 EI--MAEKENK---------TIIFVETKRRCD------------------DLTRRMRRDG 363
Query: 471 SILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLD 530
C +HG SQ R L F + GK IL TDVASRGLD
Sbjct: 364 WPAMC-------------IHGDKSQPERDWVLNEFRS------GKAPILIATDVASRGLD 404
Query: 531 LPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEEEGYMDYIK 582
+ V VI D P + ED++HRIGRTAR+ +G + F PG + + IK
Sbjct: 405 VEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIK 456
>Hs13787209 [A] KOG0331 ATP-dependent RNA helicase
Length = 715
Score = 137 bits (346), Expect = 5e-32
Identities = 112/390 (28%), Positives = 179/390 (45%), Gaps = 73/390 (18%)
Query: 190 DLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVTPTRELANQIYQ----VT 245
DL A+TG+GKT +F +P+ + + Q+ R LV+ PTRELANQ+ + +T
Sbjct: 157 DLIAQARTGTGKTFSFAIPLIEKLHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDIT 216
Query: 246 SELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSL 305
+L+ C + GG + R+R G + ++GTPGR+ DH+QN K+ L
Sbjct: 217 KKLSVACFY-------GGTPYGGQFERMRNGIDILVGTPGRIKDHIQNGKLD----LTKL 265
Query: 306 RYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRIL-HVLCSATVKGNVTK 364
++VVLDE D+++++GF + ++EIL++ + D + + P+ +L C V K
Sbjct: 266 KHVVLDEVDQMLDMGFADQVEEILSVAYKKDSEDN-----PQTLLFSATCPHWVFNVAKK 320
Query: 365 LGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGS 424
T + LI K+T+ T + ++ + I + + G + + H
Sbjct: 321 YMKSTYEQVDLIG---KKTQKTAI---TVEHLAIKCHWTQRAAVIGDVIRVYSGHQ---- 370
Query: 425 KSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNV 484
RTI+F A+ L++ ++I
Sbjct: 371 ----GRTIIFCETKKE----------------------AQELSQNSAI----------KQ 394
Query: 485 ICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPF 544
LHG + Q+ R TLK F G +L T+VA+RGLD+P V VI+ PP
Sbjct: 395 DAQSLHGDIPQKQREITLKGF------RNGSFGVLVATNVAARGLDIPEVDLVIQSSPPK 448
Query: 545 AVEDHLHRIGRTARAGCEGESLLFLLPGEE 574
VE ++HR GRT RAG G + F EE
Sbjct: 449 DVESYIHRSGRTGRAGRTGVCICFYQHKEE 478
>7298204 [A] KOG0335 ATP-dependent RNA helicase
Length = 661
Score = 137 bits (345), Expect = 6e-32
Identities = 120/437 (27%), Positives = 189/437 (42%), Gaps = 72/437 (16%)
Query: 138 EVTYSNAPLVGDTFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQT 197
+VT S+ P F S + D ++ ++N K PT IQK IP + + DL AQT
Sbjct: 234 KVTGSDVPQPIQHFTSADLRDIIIDNVN-KSGYKIPTPIQKCSIP-VISSGRDLMACAQT 291
Query: 198 GSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVP 257
GSGKT AFLLPI +L + ++V+PTRELA QI+ + A + +
Sbjct: 292 GSGKTAAFLLPILSKLLEDPHEL-ELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIG 350
Query: 258 CLLIGGERKKSEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLM 317
++ GG + + + +G + +I TPGR+LD + T + E R+VVLDE D+++
Sbjct: 351 -IVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFE----DTRFVVLDEADRML 405
Query: 318 ELGFEETLKEILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLIS 377
++GF E ++ I+ H HQ ++ SAT + ++ L+NY ++
Sbjct: 406 DMGFSEDMRRIMT--HVTMRPEHQ---------TLMFSATFPEEIQRMAGEFLKNYVFVA 454
Query: 378 SGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSC 437
G + V Q + ++ + +L+ + TIVF+
Sbjct: 455 IGIVGGACSDV-KQTIYEVNKYAKRSKLIEIL---------------SEQADGTIVFVET 498
Query: 438 SDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQT 497
DF S + F T +HG Q
Sbjct: 499 KRGADFLASFLSEKE-----------------------FPTT--------SIHGDRLQSQ 527
Query: 498 RTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTA 557
R L+ F G +L T VASRGLD+ ++ VI D P ++D++HRIGRT
Sbjct: 528 REQALRDF------KNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTG 581
Query: 558 RAGCEGESLLFLLPGEE 574
R G G + F P ++
Sbjct: 582 RVGNNGRATSFFDPEKD 598
>At5g08610 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 827
Score = 137 bits (344), Expect = 8e-32
Identities = 126/457 (27%), Positives = 215/457 (46%), Gaps = 71/457 (15%)
Query: 174 TKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSL--GQNITRQSGCFALVV 231
T +Q+ +P LQ + D+ A+TG+GKT+AFLLP ++++ +RQ LVV
Sbjct: 383 TVVQEATLPIILQGK-DVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVV 441
Query: 232 TPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKG-ANFIIGTPGRVLDH 290
PTRELA+Q + L + + ++IGG + +E+ R++ ++ TPGR+ DH
Sbjct: 442 CPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQRRMQTNPCQILVATPGRLKDH 501
Query: 291 LQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRIL 350
++NT +L ++ +VLDE D L+++GF ++ I+ + PK+
Sbjct: 502 IENTSGFATRLM-GVKVLVLDEADHLLDMGFRRDIERIIAAV-------------PKQRQ 547
Query: 351 HVLCSATVKGNVTKLGNVTL-QNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLA 409
L SATV V ++ +V L ++++ I+ Q+ + T Q + ++ ++ R +L
Sbjct: 548 TFLFSATVPEEVRQICHVALKRDHEFINCVQEGSGET---HQKVTQMYMIASLDRHFSL- 603
Query: 410 GSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKG 469
L + ++H +D+VD+ +F + R LV D L
Sbjct: 604 --LHVLLKEH-----------------IADNVDYKVIIFCTTAMVTR-LVADLLSQL--- 640
Query: 470 NSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGL 529
++ ++H Q RT F K K +IL +DV++RG+
Sbjct: 641 -------------SLNVREIHSRKPQSYRTRVSDEF------RKSKAIILVTSDVSARGV 681
Query: 530 DLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEEEGYMDYIKPYHPKGW 589
D P VS V++M P E ++HR+GRT R G EGE +L L P EE +M +K
Sbjct: 682 DYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLLLAPWEEY-FMSSVKDLPITKS 740
Query: 590 KLLTYDEQVLRPAFEGLNVRRTDKKKEDWDKHEAQAW 626
L D + ++ +GL+ K+ + QAW
Sbjct: 741 PLPPIDPEAVKRVQKGLSQVEMKNKEAAY-----QAW 772
>Hs19923595 [A] KOG0337 ATP-dependent RNA helicase
Length = 882
Score = 136 bits (343), Expect = 1e-31
Identities = 122/423 (28%), Positives = 189/423 (43%), Gaps = 74/423 (17%)
Query: 151 FDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIF 210
F S G++ + + +K PT IQ+ IP L + D+ A+TGSGKT FLLP+F
Sbjct: 98 FQSMGLSYPVFKGI-MKKGYKVPTPIQRKTIPVILDGK-DVVAMARTGSGKTACFLLPMF 155
Query: 211 QSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEK 270
+ + + + Q+G AL+++PTRELA Q + T EL + L L++GG+R + +
Sbjct: 156 ERL----KTHSAQTGARALILSPTRELALQTLKFTKELGKFTG-LKTALILGGDRMEDQF 210
Query: 271 ARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILN 330
A L + + II TPGR++ H+ +K Q S+ YVV DE D+L E+GF E L+EI+
Sbjct: 211 AALHENPDIIIATPGRLV-HVAVEMSLKLQ---SVEYVVFDEADRLFEMGFAEQLQEII- 265
Query: 331 IIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPD 390
+LP VL SAT+ + + L LI + T + +
Sbjct: 266 ------------ARLPGGHQTVLFSATLPKLLVEFARAGLTEPVLI----RLDVDTKLNE 309
Query: 391 QLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSS 450
QL +V + L L + + +T+VF++ ++ E+ ++
Sbjct: 310 QLKTSFFLVREDTKAAVLLHLLHNVVRPQ---------DQTVVFVATKHHAEYLTELLTT 360
Query: 451 HDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNND 510
V C ++ +L R L F
Sbjct: 361 Q-------------------------------RVSCAHIYSALDPTARKINLAKF----- 384
Query: 511 ATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLL 570
T GK L TD+A+RGLD+P + VI P + LHR+GR ARAG G + +
Sbjct: 385 -TLGKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVA 443
Query: 571 PGE 573
P E
Sbjct: 444 PDE 446
>7294797 [A] KOG0339 ATP-dependent RNA helicase
Length = 791
Score = 136 bits (343), Expect = 1e-31
Identities = 120/439 (27%), Positives = 191/439 (43%), Gaps = 73/439 (16%)
Query: 138 EVTYSNAPLVGDTFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQT 197
+VT + P +F FG + ++ + K + ++PT IQ +P L ++ + I A+T
Sbjct: 258 KVTGPSPPKPVTSFGHFGFDEQLIKAVR-KAEYTQPTPIQAQAVPTALSGRDIIGI-AKT 315
Query: 198 GSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVP 257
GSGKT AF+ P+ ++ Q + G L++ PTREL+ QIY + + + V
Sbjct: 316 GSGKTAAFIWPMLMHVMDQKQ-LKPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVV 374
Query: 258 CLLIGGERKKSEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLM 317
C GG + + KA L +GA I+ TPGR++D ++ +K + ++VLDE D++
Sbjct: 375 CCYGGGSKWEQSKA-LEQGAEIIVATPGRMIDMVK----MKATNLRRVTFLVLDEADRMF 429
Query: 318 ELGFEETLKEILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLIS 377
+GFE ++ I N + P R ++ SAT K + +L L + I
Sbjct: 430 HMGFEPQVRSICNHVR------------PDRQC-LMFSATFKKRIERLARDVLSDPVRIV 476
Query: 378 SGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSC 437
G + + Q + + P L+ L K EGS V +
Sbjct: 477 QG----DLNEANQDITQSVYVFPNPLQKWNW---LLCHLVKFLSEGS--------VLIFV 521
Query: 438 SDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQT 497
+ VD N ++ +N C LHG + Q
Sbjct: 522 TKKVDAE---------------------TVSNNLLIKEYN--------CLLLHGDMDQAD 552
Query: 498 RTATLKHFATNNDATKGKHL-ILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRT 556
R + F K K IL TDVA+RGLD+PH+ V+ D +E H HRIGRT
Sbjct: 553 RNKVITQF-------KRKECDILVATDVAARGLDIPHIRNVVNYDTARDIETHTHRIGRT 605
Query: 557 ARAGCEGESLLFLLPGEEE 575
RAG +G + + ++E
Sbjct: 606 GRAGEKGNAYTLVTDKDKE 624
>At4g34910 [A] KOG0346 RNA helicase
Length = 626
Score = 136 bits (342), Expect = 1e-31
Identities = 130/518 (25%), Positives = 222/518 (42%), Gaps = 51/518 (9%)
Query: 109 LNSQIVSSLFTSSRNIDTVTNSNAHDEKAEVTYSNAPLVGDTFDSFGITDTMVSHLNVKM 168
+NS++V + + + N +++ E AP +F+ G+ ++ L K
Sbjct: 12 VNSEVVDEVEKAE---EVEEQRNDREQEEEQKEEEAP---KSFEELGLDSRLIRALT-KK 64
Query: 169 KISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFA 228
I KPT IQ+ IP L+ + D+ A+TGSGKTLA+LLP+ Q + S ++ A
Sbjct: 65 GIEKPTLIQQSAIPYILEGK-DVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSA 123
Query: 229 LVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKG-ANFIIGTPGRV 287
++ P+REL Q+Y S L + C + + + S+ G ++ TP +
Sbjct: 124 FILVPSRELCQQVYTEVSSLIELCRVQLKAVQLTSSMSASDMRNALAGLPEILVSTPACI 183
Query: 288 LDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPK 347
+ ++ SL +VLDE D L+ G+E+ L+ + +II P+
Sbjct: 184 PKCFAAGVLEPTAVSESLSILVLDEADLLLSYGYEDNLRSVTSII-------------PR 230
Query: 348 RILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVT 407
R +L SAT +V KL + L N +++ + + VP + Q + + +L+
Sbjct: 231 RCQCLLMSATTSSDVEKLKKLILHNPIVLTLTEDNDKEEAVPSNVQQFWISCSAQDKLLH 290
Query: 408 LAGSL-TTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLV------G 460
+ L + QK + ++F++ D + F ++F G ++
Sbjct: 291 ILALLKLEVVQK-----------KILIFINTID-MGFRLKLFLEKFGIKSAILNGELPQN 338
Query: 461 DTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILF 520
+L + N+ L + D N K ++ + K NN +K K L
Sbjct: 339 SRLHILEQFNAGLFDYLIATDDNSQTKK----QKEEAKGEANKENKKNNKRSKPK---LD 391
Query: 521 CTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEEEGYMD- 579
RG+D V TVI D P +V ++HRIGRT RA G S+ + P E EG+ D
Sbjct: 392 AEFGVVRGIDFKKVHTVINFDMPQSVTGYIHRIGRTGRAYSSGSSVSLISPDEMEGFEDI 451
Query: 580 --YIKPYHPKGWKLLTYDEQVLRPAFEGLNVRRTDKKK 615
++ K ++T + A E L R D K
Sbjct: 452 KSFLASDKNKDIDIITPFPLLTENAVESLRYRAEDVAK 489
>SPCC285.03 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 604
Score = 135 bits (341), Expect = 2e-31
Identities = 148/572 (25%), Positives = 247/572 (42%), Gaps = 95/572 (16%)
Query: 34 KWKDRRKAKMMMEGRKPRVRGEKRPLESDGAPTFEELEASSSNSTSAQAPVEPKRSRFDN 93
K R K K + + K V + +E L+ S+S S +AQ ++ R DN
Sbjct: 17 KKSKRNKRKWLNDENKTHVTASEAAIE--------RLKKSASFSQAAQQALKQSRKE-DN 67
Query: 94 SSNVEQP-----ARVTQPLQLNSQIVSSLFTSSRNIDTVTNSNAHDEKAEVTYSNAPLVG 148
++E A+ L + V S ++ +T+ +T P
Sbjct: 68 ERDIEMQDVDAEAQPHDLLPIPQPSVEDFVDSKPHVKNITSVLPKWLAEPITVD--PNTT 125
Query: 149 DTFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQN---------DLFIHAQTGS 199
F S I+ +V L K I++ +Q V+P LQ D+ + A TGS
Sbjct: 126 VEFSSLNISSKLVERLQ-KQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVCVSAATGS 184
Query: 200 GKTLAFLLPIFQSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCL 259
GKTL++++PI Q L + C +V+ PTREL Q+ + T E L C
Sbjct: 185 GKTLSYVIPIVQC---LSHRTVPRLRC--VVIVPTRELTVQVAK-TFEYYMSGAGLQVCA 238
Query: 260 LIGGERKKSEKARLRKGAN-----FIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGD 314
G + + E +L N ++ TPGR++DH++N + Q LRY+V+DE D
Sbjct: 239 WTGQKSLRHETYQLNGDENECRIDVLVSTPGRLVDHIRNDESFSLQ---HLRYMVIDEAD 295
Query: 315 KLMELGFEETL----------------KEILNIIHGI------DIDTHQFPKLPKRILHV 352
+L++ F++ + IL++ I DIDT +LP + +
Sbjct: 296 RLLDQSFQDWVDTVMMEISHPKCLQNKSNILDLDQNISPTFLPDIDTLLPYRLPSPLQKL 355
Query: 353 LCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVI-VPPKLRLVTLAGS 411
+ SAT+ + +K+ ++ L N +L+ K E + IV VPP L+ ++ S
Sbjct: 356 VFSATLTRDPSKIASLKLHNPRLVLVQNKDMEVDDGGEIEDDAIVFSVPPTLQEYHVSVS 415
Query: 412 LTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNS 471
++ SK+ +T + F+ +++ ARL +
Sbjct: 416 SEKPILLYHLIHSKN-LTNILCFVKSNEAA---------------------ARL----HR 449
Query: 472 ILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDL 531
+L +++ + + C SLS+ R + FAT G +L C+D+ +RG+D+
Sbjct: 450 LLELIHESLNQSFSCGLFTSSLSRDERKKIISRFAT------GDLNLLVCSDLMARGIDV 503
Query: 532 PHVSTVIEMDPPFAVEDHLHRIGRTARAGCEG 563
+ VI DPP +V ++HRIGRTARAG EG
Sbjct: 504 ANTQNVINYDPPLSVRSYVHRIGRTARAGREG 535
>At5g60990 [A] KOG0330 ATP-dependent RNA helicase
Length = 454
Score = 135 bits (341), Expect = 2e-31
Identities = 131/439 (29%), Positives = 194/439 (43%), Gaps = 79/439 (17%)
Query: 150 TFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPI 209
TF G+ + +V ++ P+KIQ +P L+ + D+ AQTGSGKT AF +PI
Sbjct: 10 TFAELGVREELVKACE-RLGWKNPSKIQAEALPFALEGK-DVIGLAQTGSGKTGAFAIPI 67
Query: 210 FQSILSLGQNITRQSG------CFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGG 263
Q++L + + G FA V++PTRELA QI + L L +L+GG
Sbjct: 68 LQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADIS-LRCAVLVGG 126
Query: 264 ERKKSEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEE 323
+ + L K + + TPGR+ DH+ +TK SL+Y+VLDE D+L+ FE+
Sbjct: 127 IDRMQQTIALGKRPH--VATPGRLWDHMSDTKGFS---LKSLKYLVLDEADRLLNEDFEK 181
Query: 324 TLKEILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQT 383
+L +IL ++P L SAT+ V KL L+N I + K +
Sbjct: 182 SLNQILE-------------EIPLERKTFLFSATMTKKVRKLQRACLRNPVKIEAASKYS 228
Query: 384 ETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDF 443
D L Q+ V K + L L+ + + + +++F D F
Sbjct: 229 TV----DTLKQQYRFVAAKYKDCYLVYILSEMPE-----------STSMIFTRTCDGTRF 273
Query: 444 HYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLK 503
V L + G +P + G ++Q R L
Sbjct: 274 LALV-----------------LRSLGFRAIP--------------ISGQMTQSKRLGALN 302
Query: 504 HFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEG 563
F G+ IL CTDVASRGLD+P V VI D P +D++HR+GRTARAG G
Sbjct: 303 KFKA------GECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSG 356
Query: 564 ESLLFLLPGEEEGYMDYIK 582
+ + E E Y+ K
Sbjct: 357 VGISLVNQYELEWYIQIEK 375
>YPL119c [A] KOG0335 ATP-dependent RNA helicase
Length = 617
Score = 135 bits (340), Expect = 2e-31
Identities = 119/417 (28%), Positives = 191/417 (45%), Gaps = 83/417 (19%)
Query: 165 NVKM-KISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQN---- 219
N+K+ +KPT +QK IP + + DL AQTGSGKT FL P+F + G +
Sbjct: 168 NIKLASFTKPTPVQKYSIPIVTKGR-DLMACAQTGSGKTGGFLFPLFTELFRSGPSPVPE 226
Query: 220 -----ITRQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLR 274
+R+ ALV+ PTRELA QI++ + ++ PC++ GG ++ +
Sbjct: 227 KAQSFYSRKGYPSALVLAPTRELATQIFEEARKFTY-RSWVRPCVVYGGAPIGNQMREVD 285
Query: 275 KGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHG 334
+G + ++ TPGR+ D L+ KV LA +++Y+VLDE D+++++GFE ++ I
Sbjct: 286 RGCDLLVATPGRLNDLLERGKV---SLA-NIKYLVLDEADRMLDMGFEPQIRHI------ 335
Query: 335 IDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQ 394
++ P + R ++ SAT ++ L L NY +S G+
Sbjct: 336 --VEECDMPSVENR-QTLMFSATFPVDIQHLARDFLDNYIFLSVGR-------------- 378
Query: 395 KIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGN 454
GS + ++T+ I+++ D +D +
Sbjct: 379 --------------VGS------------TSENITQRILYV---DDMDKKSALLDLLSAE 409
Query: 455 HRGLV---GDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDA 511
H+GL +T R+ + L N +HG +Q R L F N
Sbjct: 410 HKGLTLIFVETKRMADQLTDFLIM------QNFKATAIHGDRTQAERERALSAFKANVAD 463
Query: 512 TKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLF 568
IL T VA+RGLD+P+V+ VI D P ++D++HRIGRT RAG G + F
Sbjct: 464 ------ILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSF 514
>YHR169w [A] KOG0340 ATP-dependent RNA helicase
Length = 431
Score = 135 bits (340), Expect = 2e-31
Identities = 126/421 (29%), Positives = 192/421 (44%), Gaps = 68/421 (16%)
Query: 151 FDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIF 210
F S G++ + L MKI++PT IQK IP L+ + D A+TGSGKT+AF P+
Sbjct: 4 FKSLGLSKWLTESLRA-MKITQPTAIQKACIPKILEGR-DCIGGAKTGSGKTIAFAGPM- 60
Query: 211 QSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEK 270
L + SG F +V+TPTRELA QI + + L + V +++GGE +
Sbjct: 61 -----LTKWSEDPSGMFGVVLTPTRELAMQIAEQFTALGSSMNIRVS-VIVGGESIVQQA 114
Query: 271 ARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILN 330
L++ +FII TPGR+ H+ ++ +Y+VLDE D L+ F + L ++
Sbjct: 115 LDLQRKPHFIIATPGRLAHHIMSSGDDTVGGLMRAKYLVLDEADILLTSTFADHLATCIS 174
Query: 331 IIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYK--LISSGQKQTETTTV 388
+ PK ++ L L +AT+ V L N +Q K L + + + +
Sbjct: 175 ALP---------PKDKRQTL--LFTATITDQVKSLQNAPVQKGKPPLFAYQVESVDNVAI 223
Query: 389 PDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVF 448
P L + ++VP ++ L LT +++ + + V RT+
Sbjct: 224 PSTLKIEYILVPEHVKEAYLYQLLT--CEEYENKTAIIFVNRTM---------------- 265
Query: 449 SSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATN 508
TA +L + L V LH + QQ RT +L F N
Sbjct: 266 -------------TAEILRRTLKQL---------EVRVASLHSQMPQQERTNSLHRFRAN 303
Query: 509 NDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLF 568
IL TDVASRGLD+P V V+ D P + +HR GRTARAG G+++ F
Sbjct: 304 ------AARILIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDAISF 357
Query: 569 L 569
+
Sbjct: 358 V 358
>At3g01540 [A] KOG0331 ATP-dependent RNA helicase
Length = 619
Score = 134 bits (337), Expect = 5e-31
Identities = 122/455 (26%), Positives = 205/455 (44%), Gaps = 78/455 (17%)
Query: 132 AHDEKAEVTYSNA----PLVGDTFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQA 187
A+ + E+T S PL+ +F++ G ++ + + S PT IQ P +Q
Sbjct: 139 AYSRRHEITVSGGQVPPPLM--SFEATGFPPELLREV-LSAGFSAPTPIQAQSWPIAMQG 195
Query: 188 QNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSE 247
+ D+ A+TGSGKTL +L+P F + + +N +R G LV++PTRELA QI + +
Sbjct: 196 R-DIVAIAKTGSGKTLGYLIPGFLHLQRI-RNDSRM-GPTILVLSPTRELATQIQEEAVK 252
Query: 248 LAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRY 307
+ CL GG K + L +GA+ ++ TPGR+ D L+ ++ Q++ Y
Sbjct: 253 FGRSSRISCTCLY-GGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISLRQIS----Y 307
Query: 308 VVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGN 367
+VLDE D+++++GFE +++I+ ++P + ++ +AT V K+
Sbjct: 308 LVLDEADRMLDMGFEPQIRKIVK-------------EIPTKRQTLMYTATWPKGVRKIAA 354
Query: 368 VTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSD 427
L N ++ G + + Q I +V P + Q+ ++ +S
Sbjct: 355 DLLVNPAQVNIG--NVDELVANKSITQHIEVVAPMEK------------QRRLEQILRSQ 400
Query: 428 VTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICY 487
+ V + CS + + R LT+
Sbjct: 401 EPGSKVIIFCST----------------KRMCDQLTRNLTR--------------QFGAA 430
Query: 488 KLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVE 547
+HG SQ R L F + G+ +L TDVA+RGLD+ + V+ D P VE
Sbjct: 431 AIHGDKSQPERDNVLNQFRS------GRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVE 484
Query: 548 DHLHRIGRTARAGCEGESLLFLLPGEEEGYMDYIK 582
D++HRIGRT RAG G++ F + + D IK
Sbjct: 485 DYVHRIGRTGRAGATGQAFTFFGDQDSKHASDLIK 519
>At5g08620 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 563
Score = 133 bits (335), Expect = 9e-31
Identities = 124/446 (27%), Positives = 208/446 (45%), Gaps = 67/446 (15%)
Query: 174 TKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSL--GQNITRQSGCFALVV 231
T +Q+ +P LQ + D+ A+TG+GKT+AFLLP ++++ R LVV
Sbjct: 104 TVVQEATLPLILQGK-DILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVV 162
Query: 232 TPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKG-ANFIIGTPGRVLDH 290
PTRELA Q + L + + ++IGG + +E+ RL+K ++ TPGR+ DH
Sbjct: 163 CPTRELACQAAAEANILLKYHPSIGVQVVIGGTKLPTEQRRLQKSPCQILVATPGRLKDH 222
Query: 291 LQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRIL 350
+ NT +L ++ +VLDE D L+++GF ++ I+ + PK+
Sbjct: 223 IDNTSGFATRLM-GVKVLVLDEADHLLDMGFRREIERIIAAV-------------PKQRQ 268
Query: 351 HVLCSATVKGNVTKLGNVTL-QNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLA 409
L SATV V ++ +V L ++++ ++ Q+ T Q + ++ ++ R +L
Sbjct: 269 TFLFSATVSDEVRQICHVALKRDHEFVNCVQEGAGET---HQKVSQMYMIASLDRHFSL- 324
Query: 410 GSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKG 469
L + +KH +D+V + +F + R LV D L
Sbjct: 325 --LYGLLKKH-----------------ITDNVGYKVIIFCTTAMVTR-LVADLLGKL--- 361
Query: 470 NSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGL 529
++ ++H Q RT F K K +IL +DV++RG+
Sbjct: 362 -------------SLNVREIHSRKPQSYRTRVSDEF------RKSKSIILVTSDVSARGV 402
Query: 530 DLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEEEGYMDYIKPYHPKGW 589
D P VS V++M P E ++HR+GRT R G EGE +L L P EE ++ +K
Sbjct: 403 DYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLLLAPWEEY-FLSSVKDLPITKS 461
Query: 590 KLLTYDEQVLRPAFEGL-NVRRTDKK 614
L D + ++ +GL V T+K+
Sbjct: 462 SLPPIDHEAVKKVQKGLIQVEMTNKE 487
>At1g77050 [A] KOG0337 ATP-dependent RNA helicase
Length = 513
Score = 133 bits (335), Expect = 9e-31
Identities = 121/428 (28%), Positives = 196/428 (45%), Gaps = 73/428 (17%)
Query: 173 PTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVT 232
PT IQ+ +P L D+ A+TGSGKT AFL+P+ + L Q++ Q G AL+++
Sbjct: 51 PTPIQRKTMPLILSGV-DVVAMARTGSGKTAAFLIPMLEK---LKQHVP-QGGVRALILS 105
Query: 233 PTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLDHLQ 292
PTR+LA Q + T EL + V LL+GG+ + + L KG + II TPGR++ L
Sbjct: 106 PTRDLAEQTLKFTKELGKFTDLRVS-LLVGGDSMEDQFEELTKGPDVIIATPGRLMHLLS 164
Query: 293 NTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRILHV 352
+ + ++ YVV DE D L +GF E L +IL +L + +
Sbjct: 165 E---VDDMTLRTVEYVVFDEADSLFGMGFAEQLHQILT-------------QLSENRQTL 208
Query: 353 LCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSL 412
L SAT+ + + L+ +L+ + E PD L + + P + +L
Sbjct: 209 LFSATLPSALAEFAKAGLREPQLV---RLDVENKISPDLKLSFLTVRPEEKY-----SAL 260
Query: 413 TTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSI 472
+ ++H S +T++F+S V+F +F K +I
Sbjct: 261 LYLVREHI-----SSDQQTLIFVSTKHHVEFVNSLF-------------------KLENI 296
Query: 473 LPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLP 532
P +CY G + Q R + F K ++L TD+A+RG+D+P
Sbjct: 297 EPS---------VCY---GDMDQDARKIHVSRFRAR------KTMLLIVTDIAARGIDIP 338
Query: 533 HVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEEEGYMDYIKPYHPKGWKLL 592
+ VI D P + +HR+GR ARAG G + F+ P E+ YM + + K +
Sbjct: 339 LLDNVINWDFPPRPKIFVHRVGRAARAGRTGCAYSFVTP-EDMPYMLDLHLFLSKPVRPA 397
Query: 593 TYDEQVLR 600
+++VL+
Sbjct: 398 PTEDEVLK 405
>At1g16280 [A] KOG0340 ATP-dependent RNA helicase
Length = 491
Score = 132 bits (333), Expect = 1e-30
Identities = 132/474 (27%), Positives = 209/474 (43%), Gaps = 79/474 (16%)
Query: 121 SRNIDTVTNSNAHDEKAEVTYSNAPLVGDTFDSFGITDTMVSHLNVKMKISKPTKIQKLV 180
S+ +D+ N+ ++ S+ F+ G+ + V ++ + KPT +Q
Sbjct: 30 SQKLDSDQNTPQFEKFTNPNPSSDTTSATNFEGLGLAEWAVETCK-ELGMRKPTPVQTHC 88
Query: 181 IPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVTPTRELANQ 240
+P L A D+ AQTGSGKT AF LPI + G FALVVTPTRELA Q
Sbjct: 89 VPKIL-AGRDVLGLAQTGSGKTAAFALPILHRLAE------DPYGVFALVVTPTRELAFQ 141
Query: 241 IYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQ 300
+ + L C + L +++GG ++ L + +I TPGR+ L+N +
Sbjct: 142 LAEQFKALGSCLN-LRCSVIVGGMDMLTQTMSLVSRPHIVITTPGRIKVLLENNPDVPPV 200
Query: 301 LAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRILHVLCSATVKG 360
+ + +++VLDE D+++++GF++ L+ I F LPK +L SAT+
Sbjct: 201 FSRT-KFLVLDEADRVLDVGFQDELRTI-------------FQCLPKSRQTLLFSATMTS 246
Query: 361 NVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHY 420
N+ L L++ + + E D L Q+ + + + L L+ + K
Sbjct: 247 NLQAL----LEHSSNKAYFYEAYEGLKTVDTLTQQFIFEDKDAKELYLVHILSQMEDK-- 300
Query: 421 KEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTD 480
+ ++F+S T R + + +L D
Sbjct: 301 ------GIRSAMIFVS-------------------------TCRTCQRLSLML------D 323
Query: 481 DPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEM 540
+ V +H SQ R + L F + GK IL TDVASRGLD+P V VI
Sbjct: 324 ELEVENIAMHSLNSQSMRLSALSKFKS------GKVPILLATDVASRGLDIPTVDLVINY 377
Query: 541 DPPFAVEDHLHRIGRTARAGCEG-------ESLLFLLPGEEEGYMDYIKPYHPK 587
D P D++HR+GRTARAG G E+ + L+ EE ++PY+ K
Sbjct: 378 DIPRDPRDYVHRVGRTARAGRGGLAVSIITETDVKLIHKIEEEVGKKMEPYNKK 431
>7296646 [A] KOG0331 ATP-dependent RNA helicase
Length = 577
Score = 132 bits (333), Expect = 1e-30
Identities = 118/396 (29%), Positives = 172/396 (42%), Gaps = 66/396 (16%)
Query: 173 PTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVT 232
PT IQ P + N + I A+TGSGKTL ++LP I + Q + R G ALV+
Sbjct: 162 PTAIQAQGWPIAMSGSNFVGI-AKTGSGKTLGYILPAIVHINNQ-QPLQRGDGPIALVLA 219
Query: 233 PTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLDHLQ 292
PTRELA QI QV +E + C + GG K + L++G +I TPGR++D L
Sbjct: 220 PTRELAQQIQQVATEFGSSSYVRNTC-VFGGAPKGGQMRDLQRGCEIVIATPGRLIDFLS 278
Query: 293 NTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRILHV 352
++ Y+VLDE D+++++GFE +++I++ I P R +
Sbjct: 279 AGSTNLKRCT----YLVLDEADRMLDMGFEPQIRKIVSQIR------------PDR-QTL 321
Query: 353 LCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSL 412
+ SAT V +L L NY I+ G + Q++ + +L TL +
Sbjct: 322 MWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLSDI 381
Query: 413 TTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSI 472
++ K I+F+ VD S
Sbjct: 382 YDTSESPGK---------IIIFVETKRRVDNLVRFIRSF--------------------- 411
Query: 473 LPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLP 532
V C +HG SQ R L+ F + GK IL TDVA+RGLD+
Sbjct: 412 ----------GVRCGAIHGDKSQSERDFVLREFRS------GKSNILVATDVAARGLDVD 455
Query: 533 HVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLF 568
+ VI D P ED++HRIGRT R+ +G S F
Sbjct: 456 GIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAF 491
>Hs4758138 [A] KOG0331 ATP-dependent RNA helicase
Length = 614
Score = 132 bits (332), Expect = 2e-30
Identities = 125/415 (30%), Positives = 183/415 (43%), Gaps = 68/415 (16%)
Query: 167 KMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGC 226
+ ++PT IQ P L D+ AQTGSGKTL++LLP I + + R G
Sbjct: 111 RQNFTEPTAIQAQGWPVALSGL-DMVGVAQTGSGKTLSYLLPAIVHI-NHQPFLERGDGP 168
Query: 227 FALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGR 286
LV+ PTRELA Q+ QV +E + C C + GG K + L +G I TPGR
Sbjct: 169 ICLVLAPTRELAQQVQQVAAEYCRACRLKSTC-IYGGAPKGPQIRDLERGVEICIATPGR 227
Query: 287 VLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLP 346
++D L+ K + Y+VLDE D+++++GFE +++I++ I P
Sbjct: 228 LIDFLECGKTNLRRTT----YLVLDEADRMLDMGFEPQIRKIVDQIR------------P 271
Query: 347 KRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLV 406
R ++ SAT V +L L++Y I+ G + Q++ V +L+
Sbjct: 272 DR-QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLI 330
Query: 407 TLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLL 466
L + +++K K TIVF+ D + R +
Sbjct: 331 RLMEEI--MSEKENK---------TIVFVETKRRCD------------------ELTRKM 361
Query: 467 TKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVAS 526
+ P +HG SQQ R L N+ GK IL TDVAS
Sbjct: 362 RRDG--WPAMG-----------IHGDKSQQERDWVL------NEFKHGKAPILIATDVAS 402
Query: 527 RGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEEEGYMDYI 581
RGLD+ V VI D P + ED++HRIGRTAR+ G + F P + D I
Sbjct: 403 RGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLI 457
>7298459 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 802
Score = 132 bits (332), Expect = 2e-30
Identities = 122/405 (30%), Positives = 189/405 (46%), Gaps = 59/405 (14%)
Query: 167 KMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITR---- 222
K+ +PT IQ+ IP LQ D+ A+TGSGKTLAFL+P+ I SL + I R
Sbjct: 411 KVGYKEPTPIQRQAIPIGLQ-NRDIIGVAETGSGKTLAFLIPLLSWIQSLPK-IERLEDV 468
Query: 223 QSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIG 282
G +A+++ PTRELA QI + T++ Q +++GG ++ + RLR G +I
Sbjct: 469 DQGPYAIIMAPTRELAQQIEEETTKFGQPLGIRT-VVVVGGLSREEQGFRLRLGCEIVIA 527
Query: 283 TPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNI--IHGIDIDTH 340
TPGR++D L+N ++ Q Y+VLDE D+++++GFE +++IL + + DT
Sbjct: 528 TPGRLIDVLENRYLVLNQCT----YIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 583
Query: 341 QFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPD--QLLQKIVI 398
+ K + + T + Y+ Q T T+P + L + +
Sbjct: 584 EAEDETKLMENF---------------YTKKKYR-----QTVMFTATMPPAVERLARTYL 623
Query: 399 VPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGL 458
P + G T T++ ++D + ++ + S +D +F +
Sbjct: 624 RRPATVYIGSVGKPTERTEQIVYMMGENDKRKKLMEI-LSRKIDPPVIIFVNQKKG---- 678
Query: 459 VGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLI 518
A +L KG L + T LHG Q+ R L + G I
Sbjct: 679 ----ADVLAKGLEKLGYNSCT---------LHGGKGQEQREYALAALKS------GAKDI 719
Query: 519 LFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEG 563
L TDVA RG+D+ VS VI D +ED+ HRIGRT RAG G
Sbjct: 720 LVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTGRAGKTG 764
>7293060 [A] KOG0334 RNA helicase
Length = 1224
Score = 132 bits (332), Expect = 2e-30
Identities = 123/441 (27%), Positives = 193/441 (42%), Gaps = 71/441 (16%)
Query: 167 KMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGC 226
++ KPT IQ IP + + DL A+TGSGKTLAF+LP+F+ IL ++ G
Sbjct: 527 RLGFEKPTPIQCQAIPAIMSGR-DLIGIAKTGSGKTLAFILPMFRHILD-QPSMEDGDGA 584
Query: 227 FALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGR 286
A+++ PTREL QI + + ++ L P + GG + A L++GA I+ TPGR
Sbjct: 585 IAIIMAPTRELCMQIGKDIRKFSKSLG-LRPVCVYGGTGISEQIAELKRGAEIIVCTPGR 643
Query: 287 VLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLP 346
++D L L + YVVLDE D++ ++GFE +++ II + D
Sbjct: 644 MIDMLAANSGRVTNLR-RVTYVVLDEADRMFDMGFE---PQVMRIIDNVRPDRQT----- 694
Query: 347 KRILHVLCSATVKGNVTKLGNVTLQN-YKLISSGQKQTETTTVPDQLLQKIVIVPPKLRL 405
V+ SAT + L L+ ++I G+ + V ++ Q +VI+ +
Sbjct: 695 -----VMFSATFPRQMEALARRILKKPIEVIVGGR-----SVVCKEVEQHVVILNDDAKF 744
Query: 406 VTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARL 465
L L G + IVF+ ++ D
Sbjct: 745 FKLLELL----------GIYQEAGSIIVFVDKQENADI---------------------- 772
Query: 466 LTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVA 525
D + C LHG + Q R +T+ F + GK +L T VA
Sbjct: 773 ---------LLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKS------GKVRLLIATSVA 817
Query: 526 SRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEEEGYMDYIKPYH 585
+RGLD+ + V+ D P ED++HR GRT RAG +G + F+ P + D I+
Sbjct: 818 ARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRYAGDIIRAMD 877
Query: 586 PKGWKLLTYDEQVLRPAFEGL 606
G L+ + Q L ++ L
Sbjct: 878 LSG-TLIPAELQALWTEYKAL 897
>At1g63250 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 798
Score = 131 bits (330), Expect = 3e-30
Identities = 128/483 (26%), Positives = 221/483 (45%), Gaps = 79/483 (16%)
Query: 106 PLQLNSQIVSSLFTSSRNIDTVTNSNAHDEKAEVTYSNAPLVGDTFDSFGITDTMVSHLN 165
PL +N+ V + +++D V E + YS FD I+ + L+
Sbjct: 294 PLDINT--VREDLSKRKSVDNVMEEK--QEPHDSIYS-----AKRFDESCISPLTLKALS 344
Query: 166 VKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSIL---SLGQNITR 222
I K T++Q + L + D + A+TG+GK++AFLLP +++L + G+ + +
Sbjct: 345 AS-GILKMTRVQDATLSECLDGK-DALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNK 402
Query: 223 QSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLR-KGANFII 281
+ FAL++ PTRELA+QI L + + LIGG R K ++ RL + +I
Sbjct: 403 VAPIFALILCPTRELASQIAAEGKALLKFHDGIGVQTLIGGTRFKLDQQRLESEPCQILI 462
Query: 282 GTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQ 341
TPGR+LDH++N + +L +L+ ++DE D L++LGF +++I++
Sbjct: 463 ATPGRLLDHIENKSGLTSRLM-ALKLFIVDEADLLLDLGFRRDVEKIIDC---------- 511
Query: 342 FPKLPKRILHVLCSATVKGNVTKLGNVTL-QNYKLISS-GQKQTETTTVPDQLLQKIVIV 399
LP++ +L SAT+ V ++ + L +++ I + G ET D++ Q ++
Sbjct: 512 ---LPRQRQSLLFSATIPKEVRRVSQLVLKRDHSYIDTIGLGCVET---HDKVRQSCIVA 565
Query: 400 PPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLV 459
P + + L ++H + + + IVF S Y + N R
Sbjct: 566 PHESHFHLVPHLL----KEHI---NNTPDYKIIVFCSTGMVTSLMYTLLREMKLNVR--- 615
Query: 460 GDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLIL 519
++H Q RT F +N LIL
Sbjct: 616 ----------------------------EIHARKPQLHRTRVSDEFKESN------RLIL 641
Query: 520 FCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEEEGYMD 579
+DV++RG++ P V+ VI++ P E ++HR+GRT R G GE LL + P E ++D
Sbjct: 642 VTSDVSARGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREGKGGEGLLLIAPWERY-FLD 700
Query: 580 YIK 582
+K
Sbjct: 701 ELK 703
>YDR243c [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 588
Score = 130 bits (328), Expect = 6e-30
Identities = 119/440 (27%), Positives = 207/440 (47%), Gaps = 88/440 (20%)
Query: 167 KMKISKPTKIQKLVIPPF--LQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQ- 223
+++ PT IQ++ IP ++ D A TGSGKTLAF++PI ++ + ++ R
Sbjct: 191 ELRFPSPTPIQRITIPNVCNMKQYRDFLGVASTGSGKTLAFVIPI---LIKMSRSPPRPP 247
Query: 224 -----SGCFALVVTPTRELANQIYQVTSELAQC--------CHFLVPCLLIGGERKKSEK 270
G AL++ PTREL QI + T ++ + C + ++GG +
Sbjct: 248 SLKIIDGPKALILAPTRELVQQIQKETQKVTKIWSKESNYDCKVIS---IVGGHSLEEIS 304
Query: 271 ARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILN 330
L +G + ++ TPGR++D L+N ++ +Q + +VLDE DK+++LGFE+ ++ N
Sbjct: 305 FSLSEGCDILVATPGRLIDSLENHLLVMKQ----VETLVLDEADKMIDLGFED---QVTN 357
Query: 331 IIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPD 390
I+ +DI+ ++ +AT+ + K+ +Q + G ET + P
Sbjct: 358 ILTKVDINADSAVNRQT----LMFTATMTPVIEKIAAGYMQKPVYATIG---VETGSEP- 409
Query: 391 QLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSS 450
L+Q++ V A + +K +K D I+F++ + D+ E F
Sbjct: 410 -LIQQV---------VEYADNDEDKFKKLKPIVAKYD-PPIIIFINYKQTADWLAEKFQK 458
Query: 451 HDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNND 510
+ N+ LHGS SQ+ R +L+ F TN
Sbjct: 459 ------------------------------ETNMKVTILHGSKSQEQREHSLQLFRTN-- 486
Query: 511 ATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLL 570
K I+ T+VA+RGLD+P+VS V+ ++D++HRIGRT RA EG ++ F+
Sbjct: 487 ----KVQIMIATNVAARGLDIPNVSLVVNFQISKKMDDYIHRIGRTGRAANEGTAVSFVS 542
Query: 571 PGEEEGYM----DYIKPYHP 586
E+E + Y++ + P
Sbjct: 543 AAEDESLIRELYKYVRKHDP 562
>SPCC1795.11 [A] KOG0335 ATP-dependent RNA helicase
Length = 636
Score = 130 bits (328), Expect = 6e-30
Identities = 118/424 (27%), Positives = 202/424 (46%), Gaps = 85/424 (20%)
Query: 162 SHLNVKMKIS---KPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQ 218
SHL +K+S +PT +QK IP + + DL AQTGSGKT FL PI G
Sbjct: 178 SHLLQNIKLSGYTQPTPVQKNSIP-IVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGP 236
Query: 219 NIT------------RQSGCFALVVTPTRELANQIYQVTSELAQCCH--FLVPCLLIGGE 264
R++ L++ PTREL QI++ E + C+ ++ PC + GG
Sbjct: 237 AAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHE---ESRKFCYRSWVRPCAVYGGA 293
Query: 265 RKKSEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEET 324
+++ ++ +G + + TPGR++D + ++ LA +++++VLDE D+++++GFE
Sbjct: 294 DIRAQIRQIDQGCDLLSATPGRLVDLIDRGRI---SLA-NIKFLVLDEADRMLDMGFE-- 347
Query: 325 LKEILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTE 384
+I +I+ G D+ + + + ++ SAT ++ L L++Y +S G+
Sbjct: 348 -PQIRHIVEGADMTSVEERQT------LMFSATFPRDIQLLARDFLKDYVFLSVGR---- 396
Query: 385 TTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFH 444
+ + + QK+V V + L L T+ EG T++F+ D
Sbjct: 397 VGSTSENITQKVVHVEDSEKRSYLLDILHTLP----PEG------LTLIFVETKRMAD-- 444
Query: 445 YEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKH 504
T + +L + N +HG +Q+ R L+
Sbjct: 445 ----------------------TLTDYLL-------NSNFPATSIHGDRTQRERERALEL 475
Query: 505 FATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGE 564
F + G+ I+ T VASRGLD+P+V+ VI D P ++D++HRIGRT RAG G+
Sbjct: 476 FRS------GRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGQ 529
Query: 565 SLLF 568
++ F
Sbjct: 530 AVAF 533
>YNR038w [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 629
Score = 130 bits (327), Expect = 7e-30
Identities = 126/525 (24%), Positives = 232/525 (44%), Gaps = 60/525 (11%)
Query: 68 EELEASSSNSTSAQAPVEPKRSRFDNSSNVEQPARVTQPLQLNSQIVSSLFTSSRNIDTV 127
E L AS + +E + + + QP V P+ LN+ + T N + +
Sbjct: 105 ERLGASDIAESKEDEGIEDEAASTHQLKQIPQPEFVKNPMNLNTNSLQFKSTGWLNTEKI 164
Query: 128 TNSNAHDEKAEVTYSN---APLVGDTFDSFG---------ITDTMVSHLNVKMKISKPTK 175
N+ K Y+N A L+ + +F I D+++ LN + +SK
Sbjct: 165 YYDNSLI-KPFSDYANELEAKLLQNICKNFSTNTFPIQSIILDSILPVLNFTLNVSKRN- 222
Query: 176 IQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVTPTR 235
F + D+ ++A TGSGKTLA+ +PI Q++ N R +++ PT+
Sbjct: 223 --------FTRRIGDILVNAATGSGKTLAYSIPIVQTLFKRQINRLR-----CIIIVPTK 269
Query: 236 ELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLDHLQNTK 295
L NQ+Y ++L Q +V + K K + +I TPGR++DHL N K
Sbjct: 270 LLINQVYTTLTKLTQGTSLIVSIAKLENSLKDEHKKLSNLEPDILITTPGRLVDHL-NMK 328
Query: 296 VIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRILHVLCS 355
I +L+++++DE D+L+ F+ ++++ + +DT LP ++ ++ S
Sbjct: 329 SIN---LKNLKFLIIDEADRLLNQSFQGWCPKLMSHLKTDKLDT-----LPGNVIKMIFS 380
Query: 356 ATVKGNVTKLGNVTLQNYKLISSGQKQTETT-TVPDQLLQKIVIVPPKLRLVTLAGSLTT 414
AT+ N KL + L KL KQT+ +P++L + + +P + L +
Sbjct: 381 ATLTTNTEKLNGLNLYKPKLF---LKQTDKLYQLPNKLNEFNINIPTAKSVYKPLILLYS 437
Query: 415 ITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILP 474
I Q F++ S S++ + R + +L+ + S
Sbjct: 438 ICQ----------------FMAHSPIAAKILIFVKSNESSIR--LSKLLQLICESRSQSS 479
Query: 475 CFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHV 534
+ + V ++ + S+ + +F+ ++++ IL TD+ SRG+D+ +
Sbjct: 480 VLKNLQNLAVSINSVNSNNSKAENKKIVANFSHHSES--AGITILITTDIMSRGIDINDI 537
Query: 535 STVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEEEGYMD 579
+ VI DPP + + ++HR+GRTARA G + L+ E + D
Sbjct: 538 TQVINYDPPMSSQQYVHRVGRTARANELGSAYNLLVGRGERTFFD 582
>SPBC543.06c [A] KOG0340 ATP-dependent RNA helicase
Length = 453
Score = 130 bits (327), Expect = 7e-30
Identities = 123/418 (29%), Positives = 195/418 (46%), Gaps = 67/418 (16%)
Query: 150 TFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPI 209
+F GI+ ++ L + I +PT IQ+ VI L+ +N + A+TGSGKT AF LPI
Sbjct: 8 SFSDLGISPWLIDTLKA-LAIYEPTDIQEGVIAQILEGRNCIG-GAKTGSGKTAAFALPI 65
Query: 210 FQSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSE 269
+ SG FAL++TPTRELA QI + + L + L L++GG +
Sbjct: 66 IEKWSK------DPSGIFALILTPTRELAIQIDEQFAALGANLN-LKHALIVGGMDMIRQ 118
Query: 270 KARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEIL 329
L K + ++ TPGR+ D +++ ++++V+DE D+L+ F + L +
Sbjct: 119 SIDLSKRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCF 178
Query: 330 NIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYK-LISSGQKQTETTTV 388
+++ P R +L +ATV + +L +N K + + +T+ +V
Sbjct: 179 SVL----------PASEDR-QTLLFTATVTDAIRQLKYQPQKNNKPPLWLYEVETDNISV 227
Query: 389 PDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVF 448
P L Q + V ++R L LT E +K I+F++ + + + Y +
Sbjct: 228 PSTLQQSYIFVSSQVREAYLVHLLT------IPENAKKS---AIIFVNRTRTAELIYSIL 278
Query: 449 SSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATN 508
RLL + +LH + Q+ R +L F
Sbjct: 279 ---------------RLL----------------ELRVTELHSEMVQRERINSLGRFRA- 306
Query: 509 NDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESL 566
+A K IL TDVASRGLD+P V VI D P +D++HR+GRTARAG GES+
Sbjct: 307 -EAAK----ILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESI 359
>Hs21071032 [A] KOG0341 DEAD-box protein abstrakt
Length = 622
Score = 130 bits (326), Expect = 1e-29
Identities = 119/432 (27%), Positives = 187/432 (42%), Gaps = 96/432 (22%)
Query: 167 KMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNI--TRQS 224
K I PT IQ IP L ++ + I A TGSGKTL F LP+ L + + +++
Sbjct: 198 KKGIHHPTPIQIQGIPTILSGRDMIGI-AFTGSGKTLVFTLPVIMFCLEQEKRLPFSKRE 256
Query: 225 GCFALVVTPTRELANQIYQV-----------TSELAQCCHFLVPCLLIGGERKKSEKARL 273
G + L++ P+RELA Q + + +S L +C L IGG K + +
Sbjct: 257 GPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRC------ALCIGGMSVKEQMETI 310
Query: 274 RKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIH 333
R G + ++ TPGR++D LQ V + RY+ LDE D+++++GFE ++ I +
Sbjct: 311 RHGVHMMVATPGRLMDLLQKKMVSLD----ICRYLALDEADRMIDMGFEGDIRTIFSYFK 366
Query: 334 GIDIDTHQFPKLPKRILHVLCSATVKG---NVTKLGNVTLQNYKLISSGQKQTETTTVPD 390
G +PK+I + SA VK NV + G +L
Sbjct: 367 GQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASL-------------------- 406
Query: 391 QLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSS 450
++Q++ V + ++V L L + ++F VD +E
Sbjct: 407 DVIQEVEYVKEEAKMVYLLECL------------QKTPPPVLIFAEKKADVDAIHEY--- 451
Query: 451 HDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNND 510
LL KG V +HG Q+ RT ++ F
Sbjct: 452 --------------LLLKG--------------VEAVAIHGGKDQEERTKAIEAF----- 478
Query: 511 ATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLL 570
+GK +L TDVAS+GLD P + VI D P +E+++HRIGRT R+G G + F+
Sbjct: 479 -REGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 537
Query: 571 PGEEEGYMDYIK 582
+E + +K
Sbjct: 538 KACDESVLMDLK 549
>At3g22330 [A] KOG0331 ATP-dependent RNA helicase
Length = 620
Score = 130 bits (326), Expect = 1e-29
Identities = 124/425 (29%), Positives = 181/425 (42%), Gaps = 82/425 (19%)
Query: 148 GDTFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLL 207
G GI+ +V L+ K I K IQK V+ P ++ + D+ A+TG+GKTLAF +
Sbjct: 103 GLAISELGISPEIVKALSSK-GIEKLFPIQKAVLEPAMEGR-DMIGRARTGTGKTLAFGI 160
Query: 208 PIFQSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKK 267
PI I+ R LV+ PTRELA QV E + L L GG
Sbjct: 161 PIIDKIIKYNAKHGRGRNPLCLVLAPTRELAR---QVEKEFRESAPSLDTICLYGGTPIG 217
Query: 268 SEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKE 327
+ +L G + +GTPGRV+D ++ + + +++VVLDE D+++++GF E ++
Sbjct: 218 QQMRQLDYGVDVAVGTPGRVIDLMKRGALNLSE----VQFVVLDEADQMLQVGFAEDVEI 273
Query: 328 ILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLI----SSGQKQT 383
IL KLP++ ++ SAT+ + L L N + S QK
Sbjct: 274 ILE-------------KLPEKRQSMMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLA 320
Query: 384 ETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVD- 442
+ T I+ ++ G L T +H K G + IVF D
Sbjct: 321 DGITT-------YSIIADSYGRASIIGPLVT---EHAKGG------KCIVFTQTKRDADR 364
Query: 443 FHYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATL 502
Y + S C LHG +SQ R TL
Sbjct: 365 LSYALARSFK---------------------------------CEALHGDISQSQRERTL 391
Query: 503 KHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCE 562
F G IL TDVA+RGLD+P+V +I + P E +HR GRT RAG +
Sbjct: 392 AGF------RDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKK 445
Query: 563 GESLL 567
G ++L
Sbjct: 446 GSAIL 450
>YOR204w [A] KOG0335 ATP-dependent RNA helicase
Length = 604
Score = 129 bits (325), Expect = 1e-29
Identities = 114/414 (27%), Positives = 189/414 (45%), Gaps = 77/414 (18%)
Query: 165 NVKM-KISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQ 223
N+K+ + +KPT +QK +P + DL AQTGSGKT FL P+ G + +
Sbjct: 156 NIKLARFTKPTPVQKYSVPIVANGR-DLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPE 214
Query: 224 S-GCF--------ALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLR 274
S G F A+++ PTRELA QI+ + ++ C++ GG ++ +
Sbjct: 215 SQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRS-WVKACVVYGGSPIGNQLREIE 273
Query: 275 KGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHG 334
+G + ++ TPGR+ D L+ K+ LA +++Y+VLDE D+++++GFE ++ I+
Sbjct: 274 RGCDLLVATPGRLNDLLERGKI---SLA-NVKYLVLDEADRMLDMGFEPQIRHIVE---- 325
Query: 335 IDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQ 394
D P ++ L + SAT ++ L L +Y +S G+ + + + Q
Sbjct: 326 ---DCDMTPVGERQTL--MFSATFPADIQHLARDFLSDYIFLSVGR----VGSTSENITQ 376
Query: 395 KIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGN 454
K++ V + + L L+ T T++F+
Sbjct: 377 KVLYVENQDKKSALLDLLSASTD-----------GLTLIFV------------------- 406
Query: 455 HRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKG 514
+T R+ + L N +HG +Q R L F + G
Sbjct: 407 ------ETKRMADQLTDFLIM------QNFRATAIHGDRTQSERERALAAFRS------G 448
Query: 515 KHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLF 568
+L T VA+RGLD+P+V+ VI D P V+D++HRIGRT RAG G + F
Sbjct: 449 AATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAF 502
>Hs9507237 [A] KOG0335 ATP-dependent RNA helicase
Length = 724
Score = 129 bits (325), Expect = 1e-29
Identities = 122/441 (27%), Positives = 198/441 (44%), Gaps = 84/441 (19%)
Query: 138 EVTYSNAPLVGDTFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQT 197
EV+ +AP TF+ + T+ +++ K +K T +QK IP L A DL AQT
Sbjct: 277 EVSGHDAPPAILTFEEANLCQTLNNNI-AKAGYTKLTPVQKYSIPIIL-AGRDLMACAQT 334
Query: 198 GSGKTLAFLLPIFQSILSLGQNITR-----QSGCFALVVTPTRELANQIYQVTSELA--Q 250
GSGKT AFLLPI ++ G +R + C ++V PTREL NQIY + +
Sbjct: 335 GSGKTAAFLLPILAHMMHDGITASRFKELQEPEC--IIVAPTRELVNQIYLEARKFSFGT 392
Query: 251 CCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVL 310
C +V + GG + ++ +G N + TPGR++D + K+ +Q ++Y+VL
Sbjct: 393 CVRAVV---IYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQ----IKYLVL 445
Query: 311 DEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRILH--VLCSATVKGNVTKLGNV 368
DE D+++++GF +K++++ P +P + ++ SAT + +L
Sbjct: 446 DEADRMLDMGFGPEMKKLISC-----------PGMPSKEQRQTLMFSATFPEEIQRLAAE 494
Query: 369 TLQ-NYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSD 427
L+ NY ++ GQ V +LQ + + +LV + ++
Sbjct: 495 FLKSNYLFVAVGQVGGACRDVQQTVLQ-VGQFSKREKLVEILRNIGD------------- 540
Query: 428 VTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICY 487
RT+VF+ DF A L + +
Sbjct: 541 -ERTMVFVETKKKADF------------------IATFLCQ-------------EKISTT 568
Query: 488 KLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVE 547
+HG Q+ R L D GK +L T VA+RGLD+ +V VI D P ++
Sbjct: 569 SIHGDREQREREQAL------GDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTID 622
Query: 548 DHLHRIGRTARAGCEGESLLF 568
+++HRIGRT R G G ++ F
Sbjct: 623 EYVHRIGRTGRCGNTGRAISF 643
>CE03821 [A] KOG0345 ATP-dependent RNA helicase
Length = 578
Score = 129 bits (325), Expect = 1e-29
Identities = 135/507 (26%), Positives = 228/507 (44%), Gaps = 97/507 (19%)
Query: 189 NDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCF-ALVVTPTRELANQIYQVTSE 247
+D+ + + TGSGKTLAF+LP+ + I QN Q AL+++P+REL +QI V
Sbjct: 47 SDVVVESPTGSGKTLAFVLPMMRMI----QNAKLQPADIGALILSPSRELCSQIVSVIQP 102
Query: 248 LAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRY 307
A+ + V + G + K+ K K N ++ TPGR+ +Q+ K + + +L+
Sbjct: 103 FAEKLNLTVETVTGGQKVDKNIKMFKNKNVNILVATPGRLFQIIQHEKTLIARKMRTLQL 162
Query: 308 VVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGN 367
+V+DE D+ E+ FE+ ++EIL+ I PK+ L SAT L
Sbjct: 163 LVIDEADRFNEIQFEDHMREILSCI-------------PKQRRTGLFSATQVKEEDDLMV 209
Query: 368 VTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSD 427
L+N K + Q++ + P L V A T++ + ++ ++D
Sbjct: 210 FGLRNAKQVKVAQER--NSAAPSTLKNYYV--------ECRADEKTSVCLEFIRQ--RTD 257
Query: 428 VTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICY 487
I F SC +SV + Y++F R L K P F
Sbjct: 258 KKILIFFPSC-NSVRYFYKIFE--------------RCLGK----RPLF----------- 287
Query: 488 KLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVE 547
+HG S R + +K F +D+T G ++ TDV +RG+D+ + VI+ D P
Sbjct: 288 AVHGKCSNPHRASQIKAF---SDSTNG---VMISTDVMARGIDISDIDWVIQFDLPKHSS 341
Query: 548 DHLHRIGRTARAGCEGESLLFLLPGEEEGYMDYIKPYHPKGWKLLTYDEQVLRPAFEGLN 607
+HR GRTAR G EG +L+ L+ E+ Y++++ + KL +++ P N
Sbjct: 342 WFVHRAGRTARCGREGNALI-LIASEQLAYVNFLDNHEKV--KL----DEIKVPT---NN 391
Query: 608 VRRTDKKKEDWDKHEAQAWDNNATTWHLNVERRVIEDSHFKELAVKGYMSHIRAYATHLS 667
R++++ ++ K + + D E + ++SH+ +YA H
Sbjct: 392 SRKSEELRQKMIKIQ-------------------VSDRAILEAGTRAFVSHVESYAKHDC 432
Query: 668 IEKKFFNLKCLHLGHLAKSFALRERPK 694
+L L++ LA S+AL PK
Sbjct: 433 --HLICSLDDLNVVGLANSYALLRLPK 457
>At5g63630 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 522
Score = 129 bits (325), Expect = 1e-29
Identities = 113/405 (27%), Positives = 192/405 (46%), Gaps = 65/405 (16%)
Query: 174 TKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNI--TRQSGCFALVV 231
T +Q+ +P L+ + D+ A+TG+GKT+AFLLP + ++ ++ ALV+
Sbjct: 78 TVVQEATLPIILKGK-DVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVI 136
Query: 232 TPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKG-ANFIIGTPGRVLDH 290
PTRELANQ + L + + ++IGG R E+ R++ ++ TPGR+ DH
Sbjct: 137 CPTRELANQAATEANTLLKYHPSIGVQVVIGGTRLGLEQKRMQTNPCQILVATPGRLKDH 196
Query: 291 LQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRIL 350
++NT +L ++ +VLDE D L+++GF + ++ I++ + PK
Sbjct: 197 IENTPGFATRL-KGVKVLVLDEADHLLDMGFRKDIERIISAV-------------PKERQ 242
Query: 351 HVLCSATVKGNVTKLGNVTL-QNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLA 409
L SATV V ++ V L ++++ ++ + T T + + I + L
Sbjct: 243 TFLFSATVPEEVRQICLVALRRDHEFVNCVHEGTIETHQQVRQMHMIASLDRHFSL---- 298
Query: 410 GSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKG 469
L T+ ++H +VD+ VF T ++TK
Sbjct: 299 --LYTLLREH-----------------IMGNVDYKVIVFC------------TTAMVTKL 327
Query: 470 NSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGL 529
+ L + N+ ++H Q RT +N+ K K LIL +DV++RG+
Sbjct: 328 VADL-----LGELNLNVREIHSRKPQSYRT------RVSNEFRKSKGLILVTSDVSARGV 376
Query: 530 DLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEE 574
D P V+ V+++ P E ++HR+GRT R G EGE +L L P EE
Sbjct: 377 DYPDVTLVLQVGLPKDREQYIHRLGRTGRKGKEGEGILLLAPWEE 421
>CE27030 [A] KOG0338 ATP-dependent RNA helicase
Length = 763
Score = 129 bits (324), Expect = 2e-29
Identities = 125/431 (29%), Positives = 194/431 (45%), Gaps = 100/431 (23%)
Query: 171 SKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSIL--SLGQNITRQSGCFA 228
S PT IQ+ IP L + D+ A TG+GKT AF+LPI + ++ G + TR
Sbjct: 169 SDPTPIQQACIPVALTGK-DICACAATGTGKTAAFVLPILERMIYRPKGASCTR-----V 222
Query: 229 LVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVL 288
LV+ PTRELA Q++QV +L+ V CL GG K+++A LR G + ++ TPGR++
Sbjct: 223 LVLVPTRELAIQVFQVFRKLSTFIQLEV-CLCAGGLDLKAQEAALRSGPDVVVATPGRLI 281
Query: 289 DHLQNT------------------------KVIKEQLAPSLRYVVLDEGDKLMELGFEET 324
DHL N+ K+ K P+ + +VLDE D+++E F +
Sbjct: 282 DHLHNSPSFNLSNIEVFFKTPNIPPKKNSRKICK---IPNFQVLVLDEADRMLEEAFRDQ 338
Query: 325 LKEILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTE 384
+ E++ + + +L SAT+ + +L +++LQ I + T+
Sbjct: 339 MNELIRL-------------CAQNRQTLLFSATMTEEIDELASMSLQKPVKIFINE-NTD 384
Query: 385 TTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFH 444
T Q +I R +A +T Q T TIVF+
Sbjct: 385 TALKLRQEFIRIRAGRETDREAMVAALVTRTFQ-----------TNTIVFVRTKKDCQRM 433
Query: 445 YEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKH 504
+ GL+G + ++ SL+Q R +L
Sbjct: 434 QILL--------GLLG-----------------------IKVGQMQSSLTQGQRIESLSK 462
Query: 505 FATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGE 564
F K + +L TD+ASRGLD+ V TVI M+ P +++ ++HR+GRTARAG G
Sbjct: 463 F------KKAEIDVLVSTDLASRGLDIEGVQTVINMNMPKSIKQYIHRVGRTARAGKAGR 516
Query: 565 SLLFLLPGEEE 575
S+ L GE+E
Sbjct: 517 SI--SLVGEDE 525
>At1g72730 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 414
Score = 129 bits (324), Expect = 2e-29
Identities = 127/473 (26%), Positives = 209/473 (43%), Gaps = 95/473 (20%)
Query: 122 RNIDTVTNSNAHDEKAEVTYSNAPLVGDTFDSFGITDTMVSHLNVKMKISKPTKIQKLVI 181
R DT N+ +E E Y+N V D+FD+ + ++ + KP+ IQ+ I
Sbjct: 14 RQFDTKMNAILGEEGEETFYTNYDEVCDSFDAMELQPDLLRGIYA-YGFEKPSAIQQRGI 72
Query: 182 PPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSI-LSLGQNITRQSGCFALVVTPTRELANQ 240
PF + D+ AQ+G+GKT F + Q + +SL Q C ALV+ PTRELA Q
Sbjct: 73 IPFCKGL-DVIQQAQSGTGKTATFCSGVLQQLDISLVQ-------CQALVLAPTRELAQQ 124
Query: 241 IYQVTSEL-------AQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLDHLQN 293
I +V L AQ C +GG + ++ L+ G + ++GTPGRV D L+
Sbjct: 125 IEKVMRALGDYLGVKAQAC--------VGGTSVREDQRVLQSGVHVVVGTPGRVFDLLRR 176
Query: 294 TKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRILHVL 353
+ A +++ VLDE D+++ GF++ + +I F LP ++ +
Sbjct: 177 QSL----RADAIKMFVLDEADEMLSRGFKDQIYDI-------------FQLLPSKVQVGV 219
Query: 354 CSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIV-PPKLRLVTLAGSL 412
SAT+ ++ + K + K+ E T + + Q V V + +L TL
Sbjct: 220 FSATMPPEALEITRKFMN--KPVRILVKRDELTL--EGIKQFYVNVDKEEWKLETLCDLY 275
Query: 413 TTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSI 472
T+ +T++++F++ VD+ + S D V T
Sbjct: 276 ETLA-----------ITQSVIFVNTRRKVDWLTDKMRSRDHT----VSAT---------- 310
Query: 473 LPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLP 532
HG + Q TR ++ F + G +L TD+ +RG+D+
Sbjct: 311 -----------------HGDMDQNTRDIIMREFRS------GSSRVLITTDLLARGIDVQ 347
Query: 533 HVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEEEGYMDYIKPYH 585
VS VI D P E++LHRIGR+ R G +G ++ F+ +E D + Y+
Sbjct: 348 QVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFMTSEDERMMADIQRFYN 400
>7297048 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 389
Score = 129 bits (324), Expect = 2e-29
Identities = 114/445 (25%), Positives = 195/445 (43%), Gaps = 89/445 (20%)
Query: 147 VGDTFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFL 206
V D FD + + ++ + KP+ IQ+ I P ++ + D+ AQ+G+GKT F
Sbjct: 14 VYDNFDDMNLREELLRGI-YGYGFEKPSAIQQRAIIPCVRGR-DVIAQAQSGTGKTATFS 71
Query: 207 LPIFQSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERK 266
+ I Q I T C AL++ PTRELA QI +V L + + IGG
Sbjct: 72 IAILQQI------DTSIRECQALILAPTRELATQIQRVVMALGEYMK-VHSHACIGGTNV 124
Query: 267 KSEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLK 326
+ + L G + ++GTPGRV D + N KV++ Q ++ VLDE D+++ GF++ ++
Sbjct: 125 REDARILESGCHVVVGTPGRVYDMI-NRKVLRTQY---IKLFVLDEADEMLSRGFKDQIQ 180
Query: 327 EILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETT 386
++ F LP + +L SAT+ +V ++ +++
Sbjct: 181 DV-------------FKMLPPDVQVILLSATMPPDVLEVSRCFMRD-------------- 213
Query: 387 TVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSD------VTRTIVFLSCSDS 440
P +L K +L L + + Q+++K G+ D +T++++F +
Sbjct: 214 --PVSILVK----KEELTLEGIKQFYVNVKQENWKLGTLCDLYDTLSITQSVIFCNTRRK 267
Query: 441 VDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTA 500
VD + S H N +HG + Q+ R
Sbjct: 268 VDQLTQEMSIH-------------------------------NFTVSAMHGDMEQRDREV 296
Query: 501 TLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAG 560
+K F + G +L TD+ +RG+D+ VS VI D P E+++HRIGR R G
Sbjct: 297 IMKQFRS------GSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFG 350
Query: 561 CEGESLLFLLPGEEEGYMDYIKPYH 585
+G ++ F+ + D + YH
Sbjct: 351 RKGVAINFITDDDRRILKDIEQFYH 375
>At2g47330 [A] KOG0339 ATP-dependent RNA helicase
Length = 748
Score = 129 bits (323), Expect = 2e-29
Identities = 119/411 (28%), Positives = 186/411 (44%), Gaps = 71/411 (17%)
Query: 150 TFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPI 209
TF+ G + ++S + K KPT IQ +P L ++ + I A+TGSGKT AF+LP+
Sbjct: 229 TFEDCGFSSQIMSAIK-KQAYEKPTAIQCQALPIVLSGRDVIGI-AKTGSGKTAAFVLPM 286
Query: 210 FQSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSE 269
I+ + + R G ++ PTRELA+QI+ + ++ V + GG K +
Sbjct: 287 IVHIMDQPE-LQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVY-GGMSKHEQ 344
Query: 270 KARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEIL 329
L+ G ++ TPGR++D L+ +K Y+VLDE D++ +LGFE ++ I+
Sbjct: 345 FKELKAGCEIVVATPGRLIDMLK----MKALTMMRASYLVLDEADRMFDLGFEPQVRSIV 400
Query: 330 NIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVP 389
I P R +L SAT+ V KL L + ++ G E
Sbjct: 401 GQIR------------PDR-QTLLFSATMPWKVEKLAREILSDPIRVTVG----EVGMAN 443
Query: 390 DQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFS 449
+ + Q + ++P A L + +K + DV +VF S +VD E+
Sbjct: 444 EDITQVVNVIPSD------AEKLPWLLEKLPGMIDEGDV---LVFASKKATVD---EI-- 489
Query: 450 SHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNN 509
A+L + LHG Q +R TL+ F +
Sbjct: 490 ------------EAQLTLNSFKVA--------------ALHGDKDQASRMETLQKFKS-- 521
Query: 510 DATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAG 560
G H +L TDVA+RGLD+ + TV+ D ++ H+HRIGRT RAG
Sbjct: 522 ----GVHHVLIATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTGRAG 568
>At1g55150 [A] KOG0331 ATP-dependent RNA helicase
Length = 501
Score = 129 bits (323), Expect = 2e-29
Identities = 131/484 (27%), Positives = 208/484 (42%), Gaps = 78/484 (16%)
Query: 89 SRFDNSSNVEQPARVTQPLQLNSQIVSSLFTSSRNIDTVTNSNAHDEKA--EVTYS--NA 144
S+ DN N E P ++ L + + + S + +T++ + + E+T +
Sbjct: 38 SKKDNDGN-ESPRKLD--LDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDI 94
Query: 145 PLVGDTFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLA 204
P +F G D ++ + K ++PT IQ P ++ + DL A+TGSGKTL+
Sbjct: 95 PKPVKSFRDVGFPDYVLEEVK-KAGFTEPTPIQSQGWPMAMKGR-DLIGIAETGSGKTLS 152
Query: 205 FLLPIFQSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGE 264
+LLP + + + G LV+ PTRELA QI Q S+ C+ GG
Sbjct: 153 YLLPAIVHV-NAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIY-GGV 210
Query: 265 RKKSEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEET 324
K + L+KG +I TPGR++D +++ ++ Y+VLDE D+++++GF+
Sbjct: 211 PKGPQVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVT----YLVLDEADRMLDMGFDPQ 266
Query: 325 LKEILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTE 384
+++I++ I P R + SAT V +L L N + G +
Sbjct: 267 IRKIVSHIR------------PDR-QTLYWSATWPKEVEQLSKKFLYNPYKVIIGSSDLK 313
Query: 385 TTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFH 444
Q++ I +LV L + D +R +VFL
Sbjct: 314 ANRAIRQIVDVISESQKYNKLVKLLEDI-------------MDGSRILVFLD-------- 352
Query: 445 YEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKH 504
+G T +L G L +HG SQ R L
Sbjct: 353 ---------TKKGCDQITRQLRMDGWPAL--------------SIHGDKSQAERDWVLSE 389
Query: 505 FATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGE 564
F + GK I+ TDVA+RGLD+ V VI D P ++ED++HRIGRT RAG +G
Sbjct: 390 FRS------GKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGT 443
Query: 565 SLLF 568
+ F
Sbjct: 444 AYTF 447
>YDL031w [A] KOG0337 ATP-dependent RNA helicase
Length = 995
Score = 127 bits (320), Expect = 5e-29
Identities = 121/420 (28%), Positives = 196/420 (45%), Gaps = 33/420 (7%)
Query: 150 TFDSFGITDTMVSHLNVKMK-ISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLP 208
+F SFG++ +++ N+K K +PT IQ+ IP LQ++ D+ A+TGSGKT AF+LP
Sbjct: 138 SFPSFGLSKIVLN--NIKRKGFRQPTPIQRKTIPLILQSR-DIVGMARTGSGKTAAFILP 194
Query: 209 IFQSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKS 268
+ + + S I G A++++P+RELA Q + V + A+ L LL GG+ +
Sbjct: 195 MVEKLKSHSGKI----GARAVILSPSRELAMQTFNVFKDFARGTE-LRSVLLTGGDSLEE 249
Query: 269 EKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEI 328
+ + + II TPGR L HL KV S+ YVV DE D+L E+GF+E L E+
Sbjct: 250 QFGMMMTNPDVIIATPGRFL-HL---KVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNEL 305
Query: 329 LNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVT--LQNYKLISSGQKQTETT 386
L + LP ++ + + V + +L T +N +++ K +
Sbjct: 306 LASLPTTRQTLLFSATLPNSLVDFVKAGLVNPVLVRLDAETKVSENLEMLFLSSKNADRE 365
Query: 387 TVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYE 446
+LQ+I+ +P + + L + + + S SD +F E
Sbjct: 366 ANLLYILQEIIKIP-----LATSEQLQKLQNSNNEADSDSDDEND----RQKKRRNFKKE 416
Query: 447 VFSSHD---GNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLK 503
F N T + + + D + ++G+L Q R L
Sbjct: 417 KFRKQKMPAANELPSEKATILFVPTRHHVEYISQLLRDCGYLISYIYGTLDQHARKRQLY 476
Query: 504 HFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEG 563
+F G IL TDVA+RG+D+P ++ VI P + + +HR+GRTARAG +G
Sbjct: 477 NFRA------GLTSILVVTDVAARGVDIPMLANVINYTLPGSSKIFVHRVGRTARAGNKG 530
>CE23814 [A] KOG0340 ATP-dependent RNA helicase
Length = 696
Score = 127 bits (320), Expect = 5e-29
Identities = 107/380 (28%), Positives = 178/380 (46%), Gaps = 76/380 (20%)
Query: 195 AQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQCCHF 254
A+TG+GKTLAF +PI Q + G +AL++TPTRELA QI + + L +
Sbjct: 190 ARTGTGKTLAFAIPILQKLS------VDPYGIYALILTPTRELAFQIAEQFTALGK--PI 241
Query: 255 LVPCLLIGGERKKSEKAR-LRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEG 313
+ C +I G R +AR L + + ++ TPGR+ D +++ ++ +++ VLDE
Sbjct: 242 TLKCSVIVGGRSLIHQARELSERPHVVVATPGRLADLIESDPDTIAKVFKKIQFFVLDEA 301
Query: 314 DKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNY 373
D+++E + + LK I F + ++ +L SAT+ N+ L V+ +
Sbjct: 302 DRMLEGQYNDQLKPI-------------FESISEKRQTLLLSATITNNINMLHRVSTRKP 348
Query: 374 KLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIV 433
K E+T D+L QK V+ P V + + K+Y E K+ + ++
Sbjct: 349 YFFEDKGKDDESTV--DRLEQKYVVCP-----VAVKDAYLVYVVKNYSE--KNPKSSVMI 399
Query: 434 FL-SCSD--SVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLH 490
F +C + ++ + +E G+ LH
Sbjct: 400 FAQTCRECQALAYMFEGLGFRVGS----------------------------------LH 425
Query: 491 GSLSQQTRTATLKHFATNNDATKGKHL-ILFCTDVASRGLDLPHVSTVIEMDPPFAVEDH 549
+ Q+ R A L F + K L ++ CTDVASRGLD+PHV V+ + P + +
Sbjct: 426 SQIPQKQRLAALSAF-------RSKTLQVIICTDVASRGLDIPHVDLVVNHNVPQCPKTY 478
Query: 550 LHRIGRTARAGCEGESLLFL 569
+HR+GR+ARAG G +L F+
Sbjct: 479 IHRVGRSARAGRFGSALSFV 498
>YBR237w [A] KOG0334 RNA helicase
Length = 849
Score = 127 bits (319), Expect = 6e-29
Identities = 142/595 (23%), Positives = 246/595 (40%), Gaps = 86/595 (14%)
Query: 3 FNDDDD---GMLLNFTTDVSDASETVSRGKITGGKWKDRRKAKMMMEGRKPRVRGEKRPL 59
F+DDDD G+ + A E + K ++ K + M + RG+ +
Sbjct: 107 FSDDDDSEIGVSFRSKEHIQKAPEHDNE-KDPLDEFMTSLKEEKMSNSKGMYDRGDILDV 165
Query: 60 ESD----GAPTFEELEASSSNSTSAQAPVEPKRSRFDNSSNVEQPARVTQPLQLNSQIVS 115
E G E++E ++ NS A+ + R + +P Q N I S
Sbjct: 166 EDQLFELGGTDDEDVEDNTDNSNIAKIAKLKAKKRV---KQIYYSPEELEPFQKNFYIES 222
Query: 116 SLFTSSRNIDTVTNSNAHDEKAEVTYSNAPLVGDTFDSFGI-TDTMVSHLNVKMKISKPT 174
+S ++ V + ++ + P + G+ TDTMV + K+ T
Sbjct: 223 ETVSSMSEME-VEELRLSLDNIKIKGTGCPKPVTKWSQLGLSTDTMVL-ITEKLHFGSLT 280
Query: 175 KIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVTPT 234
IQ +P + ++ + I ++TGSGKT+++LLP+ + + + ++G L++ PT
Sbjct: 281 PIQSQALPAIMSGRDVIGI-SKTGSGKTISYLLPLLRQVKAQRPLSKHETGPMGLILAPT 339
Query: 235 RELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLD--HLQ 292
RELA QI++ ++ + + GG K + L++G ++ TPGR +D L
Sbjct: 340 RELALQIHEEVTKFTEADTSIRSVCCTGGSEMKKQITDLKRGTEIVVATPGRFIDILTLN 399
Query: 293 NTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIH---GIDIDTHQFP----KL 345
+ K++ + + +VV+DE D+L +LGFE + +I+ + + + FP
Sbjct: 400 DGKLLSTK---RITFVVMDEADRLFDLGFEPQITQIMKTVRPDKQCVLFSATFPNKLRSF 456
Query: 346 PKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRL 405
R+LH S T+ NV Q +++ S ++ D L+Q L
Sbjct: 457 AVRVLHSPISITINSKGMVNENVK-QKFRICHSEDEKF------DNLVQ----------L 499
Query: 406 VTLAGSLTTITQKHYKEGSKSDV----TRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGD 461
+ Q +G SDV + I+F+S + DF
Sbjct: 500 IHERSEFFDEVQSE-NDGQSSDVEEVDAKAIIFVSSQNICDF-----------------I 541
Query: 462 TARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFC 521
+ +LL G ++ +H Q R L+ F + K+ IL C
Sbjct: 542 SKKLLNAG--------------IVTCAIHAGKPYQERLMNLEKF------KREKNSILLC 581
Query: 522 TDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEEEG 576
T+V SRGL++P VS VI + ++H GRTAR G ++ LL E G
Sbjct: 582 TEVLSRGLNVPEVSLVIIYNAVKTFAQYVHTTGRTARGSRSGTAITLLLHDELSG 636
>Hs11321632 [A] KOG0339 ATP-dependent RNA helicase
Length = 709
Score = 127 bits (319), Expect = 6e-29
Identities = 133/531 (25%), Positives = 225/531 (42%), Gaps = 89/531 (16%)
Query: 60 ESDGAPTFEELEASSSNSTSAQAPVEPKRSRFDNSSNVEQPARVTQPLQLNSQIVSSLFT 119
E+ A +E E + S P+ P + D ++ P + N +
Sbjct: 47 ENPTAGVVQEEEEDNLEYDSDGNPIAPTKKIIDPLPPIDHSEIDYPPFEKN------FYN 100
Query: 120 SSRNIDTVTNSNAHD--EKAEVTYSNA--PLVGDTFDSFGITDTMVSHLNVKMKISKPTK 175
I +T D K + S A P G +F FG D + H K + ++PT
Sbjct: 101 EHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGF-DEQLMHQIRKSEYTQPTP 159
Query: 176 IQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVTPTR 235
IQ +P L ++ + I A+TGSGKT AF+ P+ I+ + + G A++V PTR
Sbjct: 160 IQCQGVPVALSGRDMIGI-AKTGSGKTAAFIWPMLIHIMDQ-KELEPGDGPIAVIVCPTR 217
Query: 236 ELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLDHLQNTK 295
EL QI+ + + + GG + KA L++GA ++ TPGR++DH++
Sbjct: 218 ELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKA-LQEGAEIVVCTPGRLIDHVKKKA 276
Query: 296 VIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRILHVLCS 355
++++ Y+V DE D++ ++GFE ++ I + + P R +L S
Sbjct: 277 TNLQRVS----YLVFDEADRMFDMGFEYQVRSIASHVR------------PDR-QTLLFS 319
Query: 356 ATVKGNVTKLG-NVTLQNYKLISS--GQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSL 412
AT + + KL ++ + +++ G+ + T + + L
Sbjct: 320 ATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIL-------------------- 359
Query: 413 TTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSI 472
H + +TR +V + S SV +F + N L + L +G+++
Sbjct: 360 ------HSGPSKWNWLTRRLVEFTSSGSV----LLFVTKKANAEELANN---LKQEGHNL 406
Query: 473 LPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHL-ILFCTDVASRGLDL 531
LHG + Q R + F K K + +L TDVA+RGLD+
Sbjct: 407 --------------GLLHGDMDQSERNKVISDF-------KKKDIPVLVATDVAARGLDI 445
Query: 532 PHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEEEGYMDYIK 582
P + TVI D ++ H HRIGRT RAG +G + L P + D ++
Sbjct: 446 PSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVR 496
>CE18785 [A] KOG0331 ATP-dependent RNA helicase
Length = 561
Score = 127 bits (319), Expect = 6e-29
Identities = 116/414 (28%), Positives = 179/414 (43%), Gaps = 68/414 (16%)
Query: 169 KISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFA 228
K KPT IQ + P + + D+ A+TGSGKTLAF+LP I R G
Sbjct: 148 KFQKPTVIQSISWPIAMSGR-DIISIAKTGSGKTLAFMLPALVHITKQAHR-QRGEGPAV 205
Query: 229 LVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVL 288
LV+ PTRELA Q+ +V+ + + CL GG K + L +G + ++ TPGR+L
Sbjct: 206 LVLLPTRELAQQVQEVSIDFCHSLGLKMTCLF-GGASKGPQARDLERGVDIVVATPGRLL 264
Query: 289 DHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKR 348
D L N ++ + Y+VLDE D+++++GFE +K+I+ I D T F
Sbjct: 265 DFLDNGTTNMKKCS----YLVLDEADRMLDMGFEPQIKKIIGQIRP-DRQTLMF------ 313
Query: 349 ILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTL 408
SAT V L + ++ ++ G + Q++ + + +L+ L
Sbjct: 314 ------SATWPKEVRALASDFQKDAAFLNVGSLELAANHNITQVVDILEEHAKQAKLMEL 367
Query: 409 AGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTK 468
+ + QK K TI+F+ D + R + +
Sbjct: 368 LNHI--MNQKECK---------TIIFVETKRKAD------------------ELTRAMRR 398
Query: 469 GNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRG 528
D +C +HG +Q R L+ F GK I+ TDVA+RG
Sbjct: 399 -----------DGWPTLC--IHGDKNQGERDWVLQEFKA------GKTPIMLATDVAARG 439
Query: 529 LDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEEEGYMDYIK 582
LD+ + VI D P ED++HRIGRT R+ +G + F D +K
Sbjct: 440 LDVDDIKFVINYDYPNNSEDYVHRIGRTGRSDKKGTAYTFFTHTNASKAKDLLK 493
>At5g51280 [A] KOG0341 DEAD-box protein abstrakt
Length = 591
Score = 127 bits (319), Expect = 6e-29
Identities = 120/419 (28%), Positives = 177/419 (41%), Gaps = 90/419 (21%)
Query: 170 ISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILS--LGQNITRQSGCF 227
I +PT IQ +P L A D+ A TGSGKTL F+LP+ L + I G
Sbjct: 166 IVQPTPIQVQGLPVIL-AGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPI 224
Query: 228 ALVVTPTRELANQIYQVTSELAQCCHFLVPC-----------LLIGGERKKSEKARLRKG 276
L+V P+RELA Q Y+V + F+ P L IGG +S+ +++G
Sbjct: 225 GLIVCPSRELARQTYEVVEQ------FVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRG 278
Query: 277 ANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGID 336
+ ++ TPGR+ D L K+ + + RY+ LDE D+L++LGFE+ ++E+ +
Sbjct: 279 VHIVVATPGRLKDMLAKKKMSLD----ACRYLTLDEADRLVDLGFEDDIREVFDHFKSQR 334
Query: 337 IDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKI 396
+P +I SA VK +G N +I Q++
Sbjct: 335 QTLLFSATMPTKIQIFARSALVKPVTVNVGRAGAANLDVI-----------------QEV 377
Query: 397 VIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHR 456
V + ++V L L QK T V + C + D V H+
Sbjct: 378 EYVKQEAKIVYLLECL----QK----------TSPPVLIFCENKAD----VDDIHE---- 415
Query: 457 GLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKH 516
LL KG V +HG Q+ R + F GK
Sbjct: 416 -------YLLLKG--------------VEAVAIHGGKDQEDREYAISSFKA------GKK 448
Query: 517 LILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEEE 575
+L TDVAS+GLD P + VI D P +E+++HRIGRT R G G + F+ + E
Sbjct: 449 DVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSE 507
>ECU08g1080 [A] KOG0331 ATP-dependent RNA helicase
Length = 495
Score = 126 bits (317), Expect = 1e-28
Identities = 136/480 (28%), Positives = 205/480 (42%), Gaps = 77/480 (16%)
Query: 106 PLQLNSQIVSSLFTSSRNIDTVTNSNAHDEKAEVTYSNAPLVGDTFDSFGITDTMVSHLN 165
P++ + SR + +S + V +N P F+ G + +VS L
Sbjct: 44 PVEFQKNFYQEAESISRMTPSEVSSFRKTNEMIVKGTNVPHPIQKFEEAGFSSEVVSSL- 102
Query: 166 VKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSG 225
V+ S+PT IQ P L ++ + I AQTGSGKTL+F+LP Q + R G
Sbjct: 103 VEKGFSEPTAIQGQGWPMALSGRDMVGI-AQTGSGKTLSFILPALVHAKD-QQPLRRGDG 160
Query: 226 CFALVVTPTRELANQIYQVTSELAQCCHF-LVPCLLIGGERKKSEKARLRKGANFIIGTP 284
LV+ PTREL QI +V E C F L + GG + + L +GA +I TP
Sbjct: 161 PIVLVLAPTRELVMQIKKVVDEF--CGMFNLRSTAVYGGASSQPQIRALHEGAEVVIATP 218
Query: 285 GRVLD-HLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFP 343
GR++D H Q + + ++VLDE D+++++GFE L++I+ P
Sbjct: 219 GRLIDLHDQGHAPLSR-----VTFLVLDEADRMLDMGFEPQLRKII-------------P 260
Query: 344 KLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKL 403
K ++ SAT V L + Y + G ++ +T + ++ Q + + +
Sbjct: 261 KTNANRQTLMWSATWPREVRGLAESYMNEYIQVVVGNEELKTNS---KIKQIVEVCSGRE 317
Query: 404 RLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTA 463
+ L G L + K D + IVF + + D V +R G A
Sbjct: 318 KEDKLIGVL---------DNFKGD--KVIVFCNMKRTCDDLEYVL------NRSGYGAAA 360
Query: 464 RLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTD 523
LHG SQ R L +D G+ IL T+
Sbjct: 361 -------------------------LHGDKSQNIRDKVL------DDFRSGRRPILIATE 389
Query: 524 VASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGC-EGESLLFLLPGEEEGYMDYIK 582
VA RGLD+ V VI D P + ED++HRIGRTAR EG S F G++ + I+
Sbjct: 390 VAGRGLDVNDVKLVINFDFPGSCEDYVHRIGRTARGNTKEGISHTFFTVGDKANARELIR 449
>CE23832 [A] KOG0341 DEAD-box protein abstrakt
Length = 630
Score = 126 bits (317), Expect = 1e-28
Identities = 122/458 (26%), Positives = 192/458 (41%), Gaps = 85/458 (18%)
Query: 159 TMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQ 218
+++ + + I PT IQ IP L ++ + I A TGSGKT+ F+LP+ L
Sbjct: 199 SLLEFMQKQKGIVTPTAIQIQGIPVALSGRDMIGI-ASTGSGKTMTFVLPLVMFCLEQEM 257
Query: 219 NIT--RQSGCFALVVTPTRELANQIYQVTSELAQCCHF-----LVPCLLIGGERKKSEKA 271
+ R G F L++ P+RELA QI+ + E+ + L IGG +
Sbjct: 258 KLPFMRSEGPFGLIIVPSRELARQIFDLIIEMFDALGKAGLPEMRAGLCIGGVPIGEQAK 317
Query: 272 RLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNI 331
+R G + ++ TPGR+ D L K+I ++ RY+VLDE D+++++GFE+ +K I
Sbjct: 318 DVRDGIHIVVATPGRLSDMLTK-KIINLEVC---RYLVLDEADRMLDMGFEDEIKSIFYF 373
Query: 332 IHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQ 391
+P++I SA VK V +G +
Sbjct: 374 FKAQRQTLLFSATMPRKIQFFAKSALVKPIVVNVGRAGAASL-----------------N 416
Query: 392 LLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSH 451
+LQ++ V + +LV + L + K ++F VD YE
Sbjct: 417 VLQELEFVRSENKLVRVLECLQKTSPK------------VLIFAEKKVDVDNIYEY---- 460
Query: 452 DGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDA 511
LL KG + +HG Q R A ++ F N
Sbjct: 461 -------------LLVKGVEVA--------------SIHGGKDQSDRHAGIEAFRKNEKD 493
Query: 512 TKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLP 571
+L TDVAS+GLD + VI D P +E+++HRIGRT R+G +G + F+
Sbjct: 494 ------VLVATDVASKGLDFQGIEHVINFDMPEDIENYVHRIGRTGRSGRKGLATTFINK 547
Query: 572 GEEEGYMDYIKPY-------HPKGWKLLTYDEQVLRPA 602
E + +K P+ K+L DE+ PA
Sbjct: 548 KSEMSVLSDLKQLLAEAGQELPEFLKMLAGDEEGTAPA 585
>At5g63120 [A] KOG0331 ATP-dependent RNA helicase
Length = 564
Score = 126 bits (317), Expect = 1e-28
Identities = 124/406 (30%), Positives = 188/406 (45%), Gaps = 78/406 (19%)
Query: 167 KMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGC 226
K+ ++PT IQ P L+ + DL A+TGSGKTLA+LLP + S + + G
Sbjct: 155 KLGFTEPTPIQAQGWPMALKGR-DLIGIAETGSGKTLAYLLPALVHV-SAQPRLGQDDGP 212
Query: 227 FALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGR 286
L++ PTRELA QI + + + C+ GG K + LR+G +I TPGR
Sbjct: 213 IVLILAPTRELAVQIQEESRKFGLRSGVRSTCIY-GGAPKGPQIRDLRRGVEIVIATPGR 271
Query: 287 VLDHL--QNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPK 344
++D L Q+T + + + Y+VLDE D+++++GFE +++I++ I
Sbjct: 272 LIDMLECQHTNLKR------VTYLVLDEADRMLDMGFEPQIRKIVSQIR----------- 314
Query: 345 LPKRILHVLCSATVKGNVTKLGNVTLQN-YKLISSGQKQTETTTVPDQLLQKIVIVPPKL 403
P R +L SAT V L L++ YK I G + +Q+++ IV P K
Sbjct: 315 -PDR-QTLLWSATWPREVETLARQFLRDPYKAI-IGSTDLKANQSINQVIE-IVPTPEKY 370
Query: 404 -RLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDT 462
RL+TL K +GSK ++F+ RG T
Sbjct: 371 NRLLTLL--------KQLMDGSK-----ILIFVE-----------------TKRGCDQVT 400
Query: 463 ARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCT 522
+L G L +HG +Q R L F + G+ I+ T
Sbjct: 401 RQLRMDGWPAL--------------AIHGDKTQSERDRVLAEFKS------GRSPIMTAT 440
Query: 523 DVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLF 568
DVA+RGLD+ + V+ D P +ED++HRIGRT RAG +G + F
Sbjct: 441 DVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTF 486
>Hs10346129 [A] KOG0336 ATP-dependent RNA helicase
Length = 648
Score = 125 bits (315), Expect = 2e-28
Identities = 125/407 (30%), Positives = 184/407 (44%), Gaps = 78/407 (19%)
Query: 167 KMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGC 226
K KPT IQ P LQ DL AQTG+GKTL +L+P F ++ +++
Sbjct: 259 KAGFQKPTPIQSQAWPIVLQGI-DLIGVAQTGTGKTLCYLMPGFIHLVLQPSLKGQRNRP 317
Query: 227 FALVVTPTRELANQIYQVTSELAQCCHF----LVPCLLIGGERKKSEKARLRKGANFIIG 282
LV+TPTRELA Q+ +CC + L + GG + + L+KG + II
Sbjct: 318 GMLVLTPTRELALQVE------GECCKYSYKGLRSVCVYGGGNRDEQIEELKKGVDIIIA 371
Query: 283 TPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQF 342
TPGR+ D LQ + + + ++ Y+VLDE DK++++GFE + +IL +D+
Sbjct: 372 TPGRLND-LQMSNFVNLK---NITYLVLDEADKMLDMGFEPQIMKIL-----LDV----- 417
Query: 343 PKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPK 402
P R V+ SAT +V +L L+ ++ G T + Q I++ +
Sbjct: 418 --RPDR-QTVMTSATWPHSVHRLAQSYLKEPMIVYVG---TLDLVAVSSVKQNIIVTTEE 471
Query: 403 LRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDT 462
+ + T Q S S + IVF+S R V D
Sbjct: 472 EKW----SHMQTFLQ------SMSSTDKVIVFVS-------------------RKAVADH 502
Query: 463 ARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCT 522
+D N+ LHG Q+ R L++F T GK IL T
Sbjct: 503 LS------------SDLILGNISVESLHGDREQRDREKALENFKT------GKVRILIAT 544
Query: 523 DVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFL 569
D+ASRGLD+ V+ V D P +E+++HRIGRT RAG G S+ L
Sbjct: 545 DLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTL 591
>At5g14610 [A] KOG0331 ATP-dependent RNA helicase
Length = 713
Score = 125 bits (315), Expect = 2e-28
Identities = 114/412 (27%), Positives = 181/412 (43%), Gaps = 71/412 (17%)
Query: 171 SKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALV 230
S P+ IQ P +Q D+ A+TGSGKTL +L+P F + + + + G LV
Sbjct: 250 SAPSPIQAQSWPIAMQ-NRDIVAIAKTGSGKTLGYLIPGFMHLQRIHND--SRMGPTILV 306
Query: 231 VTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLDH 290
++PTRELA QI + + CL GG K + + +G + ++ TPGR+ D
Sbjct: 307 LSPTRELATQIQVEALKFGKSSKISCACLY-GGAPKGPQLKEIERGVDIVVATPGRLNDI 365
Query: 291 LQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRIL 350
L+ ++ Q++ Y+VLDE D+++++GFE +++I+N ++P +
Sbjct: 366 LEMKRISLHQVS----YLVLDEADRMLDMGFEPQIRKIVN-------------EVPTKRQ 408
Query: 351 HVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAG 410
++ +AT V K+ L N ++ G + + Q I ++ P + L
Sbjct: 409 TLMYTATWPKEVRKIAADLLVNPAQVNIG--NVDELVANKSITQTIEVLAPMEKHSRLEQ 466
Query: 411 SLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGN 470
L + + GSK I+F S D AR LT+
Sbjct: 467 IL-----RSQEPGSK-----IIIFCSTKRMCD------------------QLARNLTR-- 496
Query: 471 SILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLD 530
+HG SQ R L F + G+ +L TDVA+RGLD
Sbjct: 497 ------------TFGAAAIHGDKSQAERDDVLNQFRS------GRTPVLVATDVAARGLD 538
Query: 531 LPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEEEGYMDYIK 582
+ + V+ D P VED++HRIGRT RAG G + F + + D IK
Sbjct: 539 VKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIK 590
>At2g07750 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 845
Score = 125 bits (315), Expect = 2e-28
Identities = 112/419 (26%), Positives = 197/419 (46%), Gaps = 69/419 (16%)
Query: 170 ISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSIL---SLGQNITRQSGC 226
I K T++Q + L + D + A+TG+GK++AFLLP +++L + G+ + + +
Sbjct: 395 IVKMTRVQDATLSECLDGK-DALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPI 453
Query: 227 FALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLR-KGANFIIGTPG 285
F L++ PTRELA+QI L + + LIGG R + ++ RL + +I TPG
Sbjct: 454 FVLILCPTRELASQIAAEGKALLKNHDGIGVQTLIGGTRFRLDQQRLESEPCQILIATPG 513
Query: 286 RVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKL 345
R+LDH++N + +L +L+ ++DE D L++LGF+ +++I++ L
Sbjct: 514 RLLDHIENKSGLTSRLM-ALKLFIVDEADLLLDLGFKRDVEKIIDC-------------L 559
Query: 346 PKRILHVLCSATVKGNVTKLGNVTL-QNYKLISS-GQKQTETTTVPDQLLQKIVIVPPKL 403
P++ +L SAT+ V ++ + L +++ I + G ET D++ Q ++ P +
Sbjct: 560 PRQRQSLLFSATIPKEVRRVSQLVLKRDHSYIDTIGLGCVET---HDKVKQSCIVAPHES 616
Query: 404 RLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTA 463
+ L ++H + + IVF S Y + N R
Sbjct: 617 HFHLVPHLL----KEHI---NNMPDYKIIVFCSTGMVTSLMYTLLREMKLNVR------- 662
Query: 464 RLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTD 523
++H Q RT F +N LIL +D
Sbjct: 663 ------------------------EIHARKPQLHRTCVSDEFKESN------RLILVTSD 692
Query: 524 VASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEEEGYMDYIK 582
V++RG++ P V+ VI++ P E ++HR+GRT R G G+ LL + P E ++D +K
Sbjct: 693 VSARGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREGKGGKGLLLIAPWERY-FLDELK 750
>7296891 [A] KOG0341 DEAD-box protein abstrakt
Length = 619
Score = 125 bits (314), Expect = 2e-28
Identities = 111/401 (27%), Positives = 174/401 (42%), Gaps = 78/401 (19%)
Query: 170 ISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNIT--RQSGCF 227
I PT IQ +P L A DL A TGSGKTL F+LP+ L ++ R G +
Sbjct: 197 IKNPTPIQVQGLPTVL-AGRDLIGIAFTGSGKTLVFVLPVIMFALEQEYSLPFERNEGPY 255
Query: 228 ALVVTPTRELANQIYQVT---SELAQCCHF--LVPCLLIGGERKKSEKARLRKGANFIIG 282
L++ P+RELA Q +++ S+ Q C + CL +GG + +G + ++
Sbjct: 256 GLIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGGLPVSEALDVISRGVHIVVA 315
Query: 283 TPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQF 342
TPGR++D L K++ + RY+ +DE D+++++GFEE ++ I + G
Sbjct: 316 TPGRLMDMLDK-KILTLDMC---RYLCMDEADRMIDMGFEEDVRTIFSFFKGQRQTLLFS 371
Query: 343 PKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPK 402
+PK+I + SA VK +G +G T Q++ V +
Sbjct: 372 ATMPKKIQNFARSALVKPVTINVGR----------AGAASMNVT-------QQVEYVKQE 414
Query: 403 LRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDT 462
++V L L + ++F VD +E
Sbjct: 415 AKVVYLLDCL------------QKTAPPVLIFAEKKQDVDCIHEY--------------- 447
Query: 463 ARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCT 522
LL KG V +HG Q+ R+ + + GK +L T
Sbjct: 448 --LLLKG--------------VEAVAIHGGKDQEERSRAVDAYRV------GKKDVLVAT 485
Query: 523 DVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEG 563
DVAS+GLD P+V VI D P +E+++HRIGRT R+ +G
Sbjct: 486 DVASKGLDFPNVQHVINYDMPDDIENYVHRIGRTGRSNTKG 526
>SPCC1494.06c [A] KOG0346 RNA helicase
Length = 595
Score = 124 bits (311), Expect = 5e-28
Identities = 120/498 (24%), Positives = 216/498 (43%), Gaps = 56/498 (11%)
Query: 150 TFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPI 209
TF F + D + K + KPT +Q IP L+ + DL A+TGSGKT A+L+PI
Sbjct: 15 TFSDFNL-DPRLQRAIHKCEFEKPTSVQSETIPLALEGK-DLVAQARTGSGKTAAYLIPI 72
Query: 210 FQSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKS- 268
+ +L Q Q G FAL++ PTRELA Q+Y V +L C + + + +
Sbjct: 73 LELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTV 132
Query: 269 EKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEI 328
++ L + +I TP R + H+ + + ++ L+++V+DE D ++ G+ E +K +
Sbjct: 133 QRPLLLDLPDIVIATPSRCVVHVASGVLPLDK----LKFLVIDEADLMLSFGYNEDMKTL 188
Query: 329 LNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTE---- 384
LP+ L SAT+ N+ L + +N +++ K+
Sbjct: 189 SR-------------SLPRGTQSFLMSATLSKNIASLQKLVCRNPFILAVKDKEASGKLT 235
Query: 385 ----TTTVPDQLLQKIVIVPPKLRLV--TLAGSLTTITQKHYKEGSKSDVTRTIVFLSCS 438
+ D+ L +++ KLRL+ + + I + + + + L+
Sbjct: 236 QYVVKCSEQDKFLLAYILL--KLRLIKGKILIFVNEINRCYRLKLFLEQFGLKSLVLNSE 293
Query: 439 DSVDFHYEVFSSHD---------GNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKL 489
V+ + ++ + G++G+ L + + TD P + K
Sbjct: 294 LPVNSRLHILEQYNKGLYQIIIATDESGMMGEIEELENNVDFVEEEVISTDQPTLDKMKD 353
Query: 490 HGSLSQQTRTATLKHFATNNDATKGKHLILFCTDV-ASRGLDLPHVSTVIEMDPPFAVED 548
+ + A D +K K + + +RGLD +V+ V+ D P +
Sbjct: 354 QENADVNDESI----LAAAKDKSKKKKRVKQDKEYGVARGLDFENVACVLNFDMPSNTKS 409
Query: 549 HLHRIGRTARAGCEGESLLFLLPGEEEGYMDYIKPYHPKGWKLLTYDEQVLRPAFEGLNV 608
++HRIGRTARAG G ++ F++P E G + P + DE VLR L
Sbjct: 410 YIHRIGRTARAGKPGTAMSFVVPKSEVG------KHKPTSLESCKKDESVLR----RLEK 459
Query: 609 RRTDKKKEDWDKHEAQAW 626
++ + +DK++ A+
Sbjct: 460 KQISLQPYSFDKNQIDAF 477
>ECU02g0670 [A] KOG0335 ATP-dependent RNA helicase
Length = 503
Score = 124 bits (311), Expect = 5e-28
Identities = 113/400 (28%), Positives = 178/400 (44%), Gaps = 77/400 (19%)
Query: 171 SKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALV 230
S PT IQK IP + +N L A TG GKT+ FL+PI + + + + C +
Sbjct: 118 SAPTIIQKYCIPSLVDGRN-LICRAPTGMGKTMCFLIPIIER----HRQMKKPQAC---I 169
Query: 231 VTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLDH 290
++PTREL QI S+L V + K + G + ++ TPGR++D
Sbjct: 170 ISPTRELCEQIRVEASKLVAGSRIRVVSIY-----GKKQDLPSYSGVDIVVATPGRLIDL 224
Query: 291 LQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRIL 350
L KV ++ R VLDE DKL+++GFE ++E IHG +PK
Sbjct: 225 LHRKKVDLSEI----RMFVLDEADKLLDMGFEIPIRE----IHGF---------VPKNTQ 267
Query: 351 HVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAG 410
L SAT +T++ N L K+ S + +ET + Q+IV V K +++
Sbjct: 268 TCLFSATYSPKLTRMINYFLPEDKV--SIEISSETL---KNIRQEIVEVRNKKKMLL--- 319
Query: 411 SLTTITQKHYKEGSKSDV--TRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTK 468
++ + K + +V + +VF+ + G+ ++L K
Sbjct: 320 NILKGPDINLKGSWRMEVQPDKVLVFV------------------ERKSECGEVEKVLKK 361
Query: 469 GNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRG 528
++C LHG Q R LK F G+ ++ T VA+RG
Sbjct: 362 S-------------GILCVSLHGDKEQADRDEALKGF------RNGRFPVMVATSVAARG 402
Query: 529 LDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLF 568
+D+ V VI D P +++++HRIGRT R G G+S+ F
Sbjct: 403 IDIKDVKLVINYDIPKDIKEYIHRIGRTGREGKSGKSISF 442
>CE25121 [A] KOG0335 ATP-dependent RNA helicase
Length = 763
Score = 124 bits (311), Expect = 5e-28
Identities = 123/426 (28%), Positives = 190/426 (43%), Gaps = 63/426 (14%)
Query: 150 TFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPI 209
TF +T+TM ++ SK T IQ+ +P Q D+ AQTGSGKT AFLLPI
Sbjct: 342 TFAEANLTETMQKNV-AHAGYSKTTPIQQYALPLVHQGY-DIMACAQTGSGKTAAFLLPI 399
Query: 210 FQSILSLGQ-NITRQSGCF--ALVVTPTRELANQIYQVTSELA-QCCHFLVPCLLIGGER 265
++ N + GC+ +++TPTRELA+QIY + A Q + P + GG
Sbjct: 400 MTRLIDDNNLNTAGEGGCYPRCIILTPTRELADQIYNEGRKFAYQTMMEIKP--VYGGLA 457
Query: 266 KKSEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLME-LGFEET 324
K ++ KGA I+GT GR+ H IK R+ VLDE D++++ +GF
Sbjct: 458 VGYNKGQIEKGATIIVGTVGRI-KHFCEEGTIK---LDKCRFFVLDEADRMIDAMGFGTD 513
Query: 325 LKEILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTL-QNYKLISSGQKQT 383
++ I+N P+ R ++ SAT +V + L +NY +I+ +
Sbjct: 514 IETIVNY--------DSMPRKENR-QTLMFSATFPDSVQEAARAFLRENYVMIAIDKIGA 564
Query: 384 ETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDF 443
V Q ++ K +L+ L G I ++ ++ +T+VF+S
Sbjct: 565 ANKCVL-QEFERCERSEKKDKLLELLG--IDIDSYTTEKSAEVYTKKTMVFVS------- 614
Query: 444 HYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLK 503
R + A +L+ V +HG+ Q+ R+ L+
Sbjct: 615 -----------QRAMADTLASILSSA-------------QVPAITIHGAREQRERSEALR 650
Query: 504 HFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEG 563
F G +L T VA RGLD+ V VI D P ++D++HRIGRT R G G
Sbjct: 651 QF------RNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRVGNSG 704
Query: 564 ESLLFL 569
+ F+
Sbjct: 705 RATSFI 710
>SPAC1006.07 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 392
Score = 123 bits (309), Expect = 9e-28
Identities = 117/440 (26%), Positives = 186/440 (41%), Gaps = 95/440 (21%)
Query: 139 VTYSNAPLVGDTFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTG 198
V +N V DTFD + ++ + +P+ IQ+ I P L + D+ AQ+G
Sbjct: 9 VIETNYDEVIDTFDDMNLKPELLRGIYA-YGFERPSAIQQRAIMPIL-GERDVLAQAQSG 66
Query: 199 SGKTLAFLLPIFQSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPC 258
+GKT F + + Q I T C AL++ PTRELA QI +V L + V C
Sbjct: 67 TGKTATFSISVLQKI------DTSLKQCQALILAPTRELAQQIQKVVVALGDLMN--VEC 118
Query: 259 -LLIGGERKKSEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLM 317
IGG + + A L+ G + ++GTPGRV D +Q + + +++ VLDE D+++
Sbjct: 119 HACIGGTLVRDDMAALQAGVHVVVGTPGRVHDMIQRRALPTD----AVQMFVLDEADEML 174
Query: 318 ELGFEETLKEILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLG--------NVT 369
GF++ + +I F LP VL SAT+ +V ++ +
Sbjct: 175 SRGFKDQIYDI-------------FQLLPPTAQVVLLSATMPQDVLEVTTKFMRDPIRIL 221
Query: 370 LQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVT 429
++ +L G KQ + + + +L TL T+T VT
Sbjct: 222 VKKDELTLEGIKQF-----------YVAVEKEEWKLDTLCDLYETVT-----------VT 259
Query: 430 RTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKL 489
+ ++F + VD+ E + D +
Sbjct: 260 QAVIFCNTRRKVDWLTEQLTERD-------------------------------FTVSSM 288
Query: 490 HGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDH 549
HG + Q R + F T G IL TD+ +RG+D+ VS VI D P E++
Sbjct: 289 HGDMDQAQRDTLMHEFRT------GSSRILITTDLLARGIDVQQVSLVINYDLPANRENY 342
Query: 550 LHRIGRTARAGCEGESLLFL 569
+HRIGR R G +G S+ F+
Sbjct: 343 IHRIGRGGRFGRKGVSINFV 362
>CE09012 [A] KOG0335 ATP-dependent RNA helicase
Length = 974
Score = 123 bits (309), Expect = 9e-28
Identities = 131/483 (27%), Positives = 208/483 (42%), Gaps = 73/483 (15%)
Query: 98 EQPARVTQPLQLNSQIVSSLFTSSRNIDTVTNSNAHDEKAEVTYSNAPL---VGDTFDSF 154
E P P++ N + V F + + + + D + ++T P+ TF
Sbjct: 501 EGPKATYVPVEDNMEEV---FNMQKISEGLMFNKFFDAEVKITSDKKPVGVKTCKTFSEA 557
Query: 155 GITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSIL 214
+ +TM ++ +K T IQ+ +P Q +D+ AQTGSGKT AFLLPI ++
Sbjct: 558 NLGETMKKNV-AHAGYTKTTPIQQYTLPLIHQG-HDIMACAQTGSGKTAAFLLPIMARLI 615
Query: 215 SLGQ-NITRQSGCF--ALVVTPTRELANQIYQVTSELA-QCCHFLVPCLLIGGERKKSEK 270
N + GC+ +++TPTREL +QIY + A Q + P + GG K
Sbjct: 616 DENDLNTAGEGGCYPRCIILTPTRELTDQIYNEGRKFAYQTMMEIRP--VYGGLAVGYNK 673
Query: 271 ARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLME-LGFEETLKEIL 329
++ KGA I+GT GR+ H IK R+ VLDE D++++ +GF
Sbjct: 674 GQIEKGATIIVGTVGRI-KHFCEEGTIK---LDKCRFFVLDEADRMIDAMGF-------- 721
Query: 330 NIIHGIDIDT-HQFPKLPKRILH--VLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETT 386
G DIDT + +PK+ ++ SAT +V + L+ ++ + K
Sbjct: 722 ----GTDIDTIVNYESMPKKENRQTLMFSATFPDSVQEAARNHLKEGYIMLAIDKIGAAN 777
Query: 387 TVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYE 446
Q +K K +L+ + G I ++ S+ +TIVF+S
Sbjct: 778 KCVLQEFEKCDRSEKKDKLLEILG--IDIDSYTTEKNSEVYTKKTIVFVS---------- 825
Query: 447 VFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFA 506
R + A +L+ V +HG+ Q+ R+ L+ F
Sbjct: 826 --------QRAMADTLASILSSA-------------QVPAITIHGAREQRERSEALRQF- 863
Query: 507 TNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESL 566
G +L T VA RGLD+ V VI D P ++D++HRIGRT R G G +
Sbjct: 864 -----RNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRVGNAGRAT 918
Query: 567 LFL 569
F+
Sbjct: 919 SFI 921
>At4g33370 [A] KOG0341 DEAD-box protein abstrakt
Length = 542
Score = 123 bits (309), Expect = 9e-28
Identities = 118/415 (28%), Positives = 176/415 (41%), Gaps = 82/415 (19%)
Query: 170 ISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQ----SG 225
I PT IQ +P L ++ + I A TGSGKTL F+LP+ IL+L + I G
Sbjct: 117 IMHPTPIQVQGLPVVLSGRDMIGI-AFTGSGKTLVFVLPMI--ILALQEEIMMPIAAGEG 173
Query: 226 CFALVVTPTRELANQIYQVTSELAQCC-----HFLVPCLLIGGERKKSEKARLRKGANFI 280
ALV+ P+RELA Q Y V + L L IGG +S+ ++KG + +
Sbjct: 174 PIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIV 233
Query: 281 IGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTH 340
+ TPGR+ D L K+ + + R + LDE D+L++LGFE+ ++ H
Sbjct: 234 VATPGRLKDILAKKKMSLD----ACRLLTLDEADRLVDLGFEDDIR-------------H 276
Query: 341 QFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVP 400
F + +L SAT+ + L ++ G+ V +Q++ V
Sbjct: 277 VFDHFKSQRQTLLFSATMPAKIQIFATSALVKPVTVNVGRAGAANLDV----IQEVEYVK 332
Query: 401 PKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVG 460
+ ++V L L T V + C + D V H+
Sbjct: 333 QEAKIVYLLECLQKTTPP--------------VLIFCENKAD----VDDIHE-------- 366
Query: 461 DTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILF 520
LL KG V +HG Q+ R + F GK +L
Sbjct: 367 ---YLLLKG--------------VEAVAIHGGKDQEDRDYAISLFKA------GKKDVLV 403
Query: 521 CTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEEE 575
TDVAS+GLD P + VI D P +E+++HRIGRT R G G + F+ + E
Sbjct: 404 ATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTFINKNQSE 458
>YLR276c [A] KOG0346 RNA helicase
Length = 594
Score = 123 bits (308), Expect = 1e-27
Identities = 128/520 (24%), Positives = 228/520 (43%), Gaps = 54/520 (10%)
Query: 150 TFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPI 209
TF++F + ++ + + PT IQ IP LQ + D+ A TGSGKTLA+L+P+
Sbjct: 18 TFEAFHLDSRLLQAIK-NIGFQYPTLIQSHAIPLALQQKRDIIAKAATGSGKTLAYLIPV 76
Query: 210 FQSILSLGQNIT--RQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKK 267
++IL + I ++G +++ PTRELA Q+Y V +L C + L I +
Sbjct: 77 IETILEYKKTIDNGEENGTLGIILVPTRELAQQVYNVLEKLVLYCSKDIRTLNISSDMSD 136
Query: 268 SE-KARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLK 326
S L I+GTPG++LD LQ TK+ L L+++V+DE D ++ G+++ L
Sbjct: 137 SVLSTLLMDQPEIIVGTPGKLLDLLQ-TKINSISL-NELKFLVVDEVDLVLTFGYQDDLN 194
Query: 327 EILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETT 386
+I ++ L K + L SAT+ ++ L ++ ++ + E
Sbjct: 195 KI-----------GEYLPLKKNLQTFLMSATLNDDIQALKQKFCRSPAILKFNDE--EIN 241
Query: 387 TVPDQLLQKIVIVP--PKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFH 444
++LLQ V V K L + L I K T++F++ D +
Sbjct: 242 KNQNKLLQYYVKVSEFDKFLLCYVIFKLNLIKGK------------TLIFVNNIDR-GYR 288
Query: 445 YEVFSSHDG------NHRGLVGDTARLLTKGN-SILPCFNDTDDPNVICYK----LHGSL 493
++ G N V ++ + N ++ TDD I + G
Sbjct: 289 LKLVMEQFGIKSCILNSELPVNSRQHIVDQFNKNVYQLLIATDDTEYIKEEDDEIEEGHN 348
Query: 494 SQQTRTATLKHFATNNDATKGKHLILFCTDV---ASRGLDLPHVSTVIEMDPPFAVEDHL 550
++ +L+ N+ K + D SRG+D +V+ V+ D P + ++
Sbjct: 349 TENQEEKSLEGEPENDKKPSKKKKVQVKKDKEYGVSRGVDFKNVACVLNFDLPTTAKSYV 408
Query: 551 HRIGRTARAGCEGESLLFLLPGEEEGYMDYIKPYHPKGWKLLTYDEQVLRPAFEGLNVRR 610
HR+GRTAR G G ++ F++P +E G + P + DE++L + +
Sbjct: 409 HRVGRTARGGKTGTAISFVVPLKEFG------KHKPSMLQTAKKDERILSRIIKQQSKLG 462
Query: 611 TDKKKEDWDKHEAQAWDNNATTWHLNVERRVIEDSHFKEL 650
+ + +D+ + +A+ V + I ++ KEL
Sbjct: 463 LELQPYKFDQKQVEAFRYRMEDGFRAVTQVAIREARVKEL 502
>CE07736 [A] KOG0335 ATP-dependent RNA helicase
Length = 720
Score = 123 bits (308), Expect = 1e-27
Identities = 120/407 (29%), Positives = 186/407 (45%), Gaps = 66/407 (16%)
Query: 171 SKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIF-QSILSLGQNITRQSGCF-- 227
++ T IQ+ +P + D+ AQTGSGKT AFLLPI + IL N + GC+
Sbjct: 319 TRTTPIQQYTLPLVADGK-DILACAQTGSGKTAAFLLPIMSRLILEKDLNYGAEGGCYPR 377
Query: 228 ALVVTPTRELANQIYQVTSELA-QCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGR 286
+++TPTRELA+QIY + + Q + P + GG K+++ KG I+GT GR
Sbjct: 378 CIILTPTRELADQIYNEGRKFSYQSVMEIKP--VYGGINVGYNKSQIMKGCTIIVGTIGR 435
Query: 287 VLDHLQNTKVIKEQLAPSLRYVVLDEGDKLME-LGFEETLKEILNIIHGIDIDTHQFPKL 345
V H IK RY+VLDE D++++ +GF +++I+N PK
Sbjct: 436 V-KHFCEDGAIK---LDKCRYLVLDEADRMIDSMGFGPEIEQIINY--------KNMPKN 483
Query: 346 PKRILHVLCSATVKGNVTKLGNVTL-QNYKLISSGQKQTETTTVPD--QLLQKIVIVPPK 402
KR ++ SAT +V + L ++Y +I+ + V +L + V
Sbjct: 484 DKR-QTMMFSATFPSSVQEAARKLLREDYTMITIDKIGAANKCVIQEFELCDRTSKVDKL 542
Query: 403 LRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDT 462
L+L+ + + T T ++ S V +TIVF++ D + S+
Sbjct: 543 LKLLGI--DIDTYTT---EKNSDVFVKKTIVFVAQQKMADTLASIMSA------------ 585
Query: 463 ARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCT 522
V +HG+ Q+ R+A LK F + G +L T
Sbjct: 586 -------------------AQVPAITIHGAREQKERSAALKLFRS------GAKPVLIAT 620
Query: 523 DVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFL 569
V RGLD+ V VI D P ++D++HRIGRT R G G + F+
Sbjct: 621 AVVERGLDIKGVDHVINYDMPNNIDDYIHRIGRTGRVGNSGRATSFI 667
>SPAC31A2.07c [A] KOG0337 ATP-dependent RNA helicase
Length = 848
Score = 122 bits (306), Expect = 2e-27
Identities = 131/450 (29%), Positives = 203/450 (45%), Gaps = 84/450 (18%)
Query: 151 FDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIF 210
F S G+ T++ + K PT IQ+ IP L+ + D+ A+TGSGKT AF++P+
Sbjct: 71 FQSMGLNQTLLRAI-FKKGFKAPTPIQRKTIPLLLEGR-DVVGMARTGSGKTAAFVIPMI 128
Query: 211 QSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEK 270
+ + S N S AL+++P RELA Q +V + ++ L ++GG + +
Sbjct: 129 EHLKSTLAN----SNTRALILSPNRELALQTVKVVKDFSKGTD-LRSVAIVGGVSLEEQF 183
Query: 271 ARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILN 330
+ L + ++ TPGR L HL KV + S+ YVV DE D+L E+GF L EIL+
Sbjct: 184 SLLSGKPDIVVATPGRFL-HL---KVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILH 239
Query: 331 IIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLIS-------SGQKQT 383
LP +L SAT+ + LQ+ L+ S Q+
Sbjct: 240 -------------ALPTSRQTLLFSATLPRTLVDFAKAGLQDPVLVRLDVESKVSADLQS 286
Query: 384 ETTTVPDQ--------LLQKIVIVPPK--LRLVTLAGSLTTITQKHYKE----GSKS-DV 428
+V +LQ I+ +P K +R + +K E GS+S
Sbjct: 287 AFFSVKTAEREAALLCILQDIIKLPLKDNVRPREIGNVNNPKKRKRALELALKGSESGSP 346
Query: 429 TRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYK 488
T+VF+ V++ E+ L+ G S+ K
Sbjct: 347 DSTLVFVPTKHHVEYVSEL-----------------LVQAGYSV--------------SK 375
Query: 489 LHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVED 548
++GSL Q+ R + +F GK +L TDVASRG+D+P ++ VI D P +
Sbjct: 376 IYGSLDQEARLNEINNFRL------GKTNLLVVTDVASRGIDIPLLANVINYDFPPQPKV 429
Query: 549 HLHRIGRTARAGCEGESLLFLLPGEEEGYM 578
+HR+GRTARAG G + L+ E+ GY+
Sbjct: 430 FVHRVGRTARAGRTGWA-YSLVRAEDAGYL 458
>YDR021w [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 122 bits (305), Expect = 3e-27
Identities = 113/447 (25%), Positives = 200/447 (44%), Gaps = 96/447 (21%)
Query: 134 DEKAEVTYSNAPLVGDTFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFI 193
D+K + S V TF+S + D ++ + P+ IQ I + + D+
Sbjct: 8 DQKLKFKTSKKLKVSSTFESMNLKDDLLRGI-YSYGFEAPSSIQSRAITQIISGK-DVIA 65
Query: 194 HAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQCCH 253
AQ+G+GKT F + + Q+I R+ AL+++PTRELA+QI QV L +
Sbjct: 66 QAQSGTGKTATFTIGLLQAI------DLRKKDLQALILSPTRELASQIGQVVKNLGDYMN 119
Query: 254 FLVPCLLIGGERKKSEKARLRK-GANFIIGTPGRVLDHLQNTKVIKEQL--APSLRYVVL 310
+ + GG+ K + +++K G + GTPGRVLD +IK+Q+ +++ +VL
Sbjct: 120 -VNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLD------MIKKQMLQTRNVQMLVL 172
Query: 311 DEGDKLME--LGFEETLKEILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNV 368
DE D+L+ LGF++ + +I F KLPK V+ SAT+ ++ ++
Sbjct: 173 DEADELLSETLGFKQQIYDI-------------FAKLPKNCQVVVVSATMNKDILEVTRK 219
Query: 369 TLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSD- 427
+ + KI++ ++ L + + + ++ +K + D
Sbjct: 220 FMND--------------------PVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDI 259
Query: 428 -----VTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDP 482
+T+ ++F + VD+ + RL+
Sbjct: 260 YDSLTITQCVIFCNTKKKVDWL-----------------SQRLI--------------QS 288
Query: 483 NVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDP 542
N +HG + Q+ R + F T G +L TDV +RG+D+ VS VI D
Sbjct: 289 NFAVVSMHGDMKQEERDKVMNDFRT------GHSRVLISTDVWARGIDVQQVSLVINYDL 342
Query: 543 PFAVEDHLHRIGRTARAGCEGESLLFL 569
P +E+++HRIGR+ R G +G ++ F+
Sbjct: 343 PEIIENYIHRIGRSGRFGRKGVAINFI 369
>At3g13920 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 412
Score = 122 bits (305), Expect = 3e-27
Identities = 118/441 (26%), Positives = 197/441 (43%), Gaps = 81/441 (18%)
Query: 147 VGDTFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFL 206
V ++FD+ G+ + ++ + KP+ IQ+ I PF + D+ AQ+G+GKT F
Sbjct: 37 VHESFDAMGLQENLLRGIYA-YGFEKPSAIQQRGIVPFCKGL-DVIQQAQSGTGKTATFC 94
Query: 207 LPIFQSI-LSLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGER 265
+ Q + SL Q C ALV+ PTRELA QI +V L V +GG
Sbjct: 95 SGVLQQLDFSLIQ-------CQALVLAPTRELAQQIEKVMRALGDYLGVKVHAC-VGGTS 146
Query: 266 KKSEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETL 325
+ ++ L+ G + ++GTPGRV D L+ + A +++ VLDE D+++ GF++ +
Sbjct: 147 VREDQRILQAGVHVVVGTPGRVFDMLKRQSL----RADNIKMFVLDEADEMLSRGFKDQI 202
Query: 326 KEILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTET 385
+I F LP +I + SAT+ ++ + K + K+ E
Sbjct: 203 YDI-------------FQLLPPKIQVGVFSATMPPEALEITRKFMS--KPVRILVKRDEL 247
Query: 386 TTVPDQLLQKIV-IVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFH 444
T + + Q V + + +L TL T+ +T++++F++ VD+
Sbjct: 248 TL--EGIKQFYVNVEKEEWKLETLCDLYETLA-----------ITQSVIFVNTRRKVDWL 294
Query: 445 YEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKH 504
+ S D V T HG + Q TR ++
Sbjct: 295 TDKMRSRDHT----VSAT---------------------------HGDMDQNTRDIIMRE 323
Query: 505 FATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGE 564
F + G +L TD+ +RG+D+ VS VI D P E++LHRIGR+ R G +G
Sbjct: 324 FRS------GSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGV 377
Query: 565 SLLFLLPGEEEGYMDYIKPYH 585
++ F+ +E D K Y+
Sbjct: 378 AINFVTRDDERMLFDIQKFYN 398
>SPBP8B7.16c [A] KOG0331 ATP-dependent RNA helicase
Length = 550
Score = 121 bits (304), Expect = 3e-27
Identities = 123/453 (27%), Positives = 191/453 (42%), Gaps = 80/453 (17%)
Query: 122 RNIDTVTNSNAHDEKAEVTYS-NAPLVGDTFDSFGITDTMVSHLNVKMKISKPTKIQKLV 180
RN + EK V + N P TF+ G + ++ + ++ PT IQ+
Sbjct: 94 RNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEVK-QLGFEAPTPIQQQA 152
Query: 181 IPPFLQAQNDLFIHAQTGSGKTLAFLLPIF-----QSILSLGQNITRQSGCFALVVTPTR 235
P + ++ + I A TGSGKTL++ LP Q +LS G G LV+ PTR
Sbjct: 153 WPMAMSGRDMVGISA-TGSGKTLSYCLPAIVHINAQPLLSPGD------GPIVLVLAPTR 205
Query: 236 ELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLDHLQNTK 295
ELA QI Q ++ + C+ GG + + L +G I TPGR+LD L + K
Sbjct: 206 ELAVQIQQECTKFGKSSRIRNTCVY-GGVPRGPQIRDLIRGVEICIATPGRLLDMLDSNK 264
Query: 296 VIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRILHVLCS 355
++ Y+VLDE D+++++GFE +++I++ I P R V+ S
Sbjct: 265 TNLRRVT----YLVLDEADRMLDMGFEPQIRKIVDQIR------------PDR-QTVMFS 307
Query: 356 ATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTI 415
AT V +L L +Y ++ G + Q+++ + + RL
Sbjct: 308 ATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARL---------- 357
Query: 416 TQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILPC 475
K +E K + ++F D D R L + P
Sbjct: 358 -GKDIEEVLKDRDNKVLIFTGTKRVAD------------------DITRFLRQDG--WPA 396
Query: 476 FNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVS 535
+HG +Q R L F T GK I+ TDVASRG+D+ ++
Sbjct: 397 L-----------AIHGDKAQDERDWVLNEFRT------GKSPIMVATDVASRGIDVKGIT 439
Query: 536 TVIEMDPPFAVEDHLHRIGRTARAGCEGESLLF 568
V D P ED++HRIGRT RAG +G + +
Sbjct: 440 HVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTY 472
>Hs22054507 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 729
Score = 121 bits (304), Expect = 3e-27
Identities = 124/455 (27%), Positives = 186/455 (40%), Gaps = 126/455 (27%)
Query: 134 DEKAEVTYSNAPLVGDTFD-SFGITDTMVSHLNVK----MKISKPTKIQKLVIPPFLQAQ 188
++ EV L G D SF +V+ +K M T+IQ I L+ +
Sbjct: 348 EDNREVPSLRLRLTGAFDDTSFASLSNLVNENTLKAIKEMSFMNMTEIQHKTIRSLLEGR 407
Query: 189 NDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSEL 248
DL A+TGS + + L T + G F +++PTRELA QI+
Sbjct: 408 -DLLAAAKTGS----------VELTVKLKFMPTNRPGVF--ILSPTRELAMQIFGG---- 450
Query: 249 AQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYV 308
A H L++GG+ +E +L G N I+ TPG +LD++QNT + +L+Y+
Sbjct: 451 ANTHHMHTYGLIMGGDNTSAEAQKLANGINIIVATPGHLLDYMQNTPGF---MYKNLQYL 507
Query: 309 VLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNV 368
V+DE D+++++GFEE LK+I+ + LP +L SAT V L +
Sbjct: 508 VIDEADRILDVGFEEELKQIIKL-------------LPTCRHTMLLSATQTRKVEDLARI 554
Query: 369 TLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDV 428
+L+ K K+
Sbjct: 555 SLK-------------------------------------------------KGAIKNRK 565
Query: 429 TRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYK 488
+ +VF S S SV +HYE+ + D LP
Sbjct: 566 RKIMVFFSSSMSVKYHYELLNYMD--------------------LPIL-----------A 594
Query: 489 LHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVED 548
+HG Q T T F K IL C DVA+RGLD+P V +++ DP ++
Sbjct: 595 IHGKQKQNKGTTTFFQFC------KADSGILLCMDVAARGLDIPEVDWIVQHDPLDDPKE 648
Query: 549 HLHRIGRTARA-GCEGESLLFLLPGEEEGYMDYIK 582
++HR+ RTAR G LL L P EE G++ Y+K
Sbjct: 649 YIHRVSRTARGLNGRGHVLLILCP-EEMGFLHYLK 682
>YNL112w [A] KOG0331 ATP-dependent RNA helicase
Length = 546
Score = 121 bits (303), Expect = 4e-27
Identities = 124/490 (25%), Positives = 208/490 (42%), Gaps = 78/490 (15%)
Query: 88 RSRFDNSSNVEQPARVTQP-----LQLNSQIVSSLFTSSRNIDTVTNSNAHDEKAE---- 138
R F SN QP + +P L + + ++ ++S + E
Sbjct: 43 RGGFGGRSNYNQPQELIKPNWDEELPKLPTFEKNFYVEHESVRDRSDSEIAQFRKENEMT 102
Query: 139 VTYSNAPLVGDTFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTG 198
++ + P TFD G D +++ + + KPT IQ P L ++ + I A TG
Sbjct: 103 ISGHDIPKPITTFDEAGFPDYVLNEVKAE-GFDKPTGIQCQGWPMALSGRDMVGI-AATG 160
Query: 199 SGKTLAFLLPIFQSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPC 258
SGKTL++ LP I + + G LV+ PTRELA QI S+ C
Sbjct: 161 SGKTLSYCLPGIVHI-NAQPLLAPGDGPIVLVLAPTRELAVQIQTECSKFGHSSRIRNTC 219
Query: 259 LLIGGERKKSEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLME 318
+ GG K + L +G+ +I TPGR++D L+ K +++ Y+VLDE D++++
Sbjct: 220 VY-GGVPKSQQIRDLSRGSEIVIATPGRLIDMLEIGKTNLKRVT----YLVLDEADRMLD 274
Query: 319 LGFEETLKEILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISS 378
+GFE +++I++ I P R ++ SAT V +L L + +
Sbjct: 275 MGFEPQIRKIVDQIR------------PDR-QTLMWSATWPKEVKQLAADYLNDPIQVQV 321
Query: 379 GQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCS 438
G + + Q+++ + + RL K+ + S+ + +T++F S
Sbjct: 322 GSLELSASHNITQIVEVVSDFEKRDRL-----------NKYLETASQDNEYKTLIFASTK 370
Query: 439 DSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTR 498
D D + L + +HG Q+ R
Sbjct: 371 RMCD------------------DITKYLR-------------EDGWPALAIHGDKDQRER 399
Query: 499 TATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTAR 558
L+ F G+ I+ TDVA+RG+D+ ++ VI D P +ED++HRIGRT R
Sbjct: 400 DWVLQEF------RNGRSPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGR 453
Query: 559 AGCEGESLLF 568
AG G ++ F
Sbjct: 454 AGATGTAISF 463
>CE01341 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 402
Score = 121 bits (303), Expect = 4e-27
Identities = 112/434 (25%), Positives = 189/434 (42%), Gaps = 91/434 (20%)
Query: 143 NAPLVGDTFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKT 202
N V ++FD + + ++ + KP+ IQK I P + D+ AQ+G+GKT
Sbjct: 23 NYDQVVESFDDMELKEELLRGI-YGFGFEKPSAIQKRAIVPCTTGK-DVIAQAQSGTGKT 80
Query: 203 LAFLLPIFQSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQCCHF-LVPCLLI 261
F + I Q I ++ ALV+ PTRELA QI +V S L + + ++PC I
Sbjct: 81 ATFSVSILQRIDHEDPHVQ------ALVMAPTRELAQQIQKVMSALGEYLNVNILPC--I 132
Query: 262 GGERKKSEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGF 321
GG + ++ +L G + ++GTPGRV D + + + ++ VLDE D+++ GF
Sbjct: 133 GGTSVRDDQRKLEAGIHVVVGTPGRVGDMINRNALDTSR----IKMFVLDEADEMLSRGF 188
Query: 322 EETLKEILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQK 381
++ + E+ F +P+ + VL SAT+ V + N ++N
Sbjct: 189 KDQIYEV-------------FRSMPQDVQVVLLSATMPSEVLDVTNRFMRN--------- 226
Query: 382 QTETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSD------VTRTIVFL 435
P ++L K +L L + + + +K D VT+ ++F
Sbjct: 227 -------PIRILVK----KDELTLEGIRQFYINVQKDEWKFDCLCDLYNVVNVTQAVIFC 275
Query: 436 SCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQ 495
N R V +T+ + C LHG + Q
Sbjct: 276 ------------------NTRRKVDTLTEKMTENQFTVSC-------------LHGDMDQ 304
Query: 496 QTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGR 555
R ++ F + G +L TD+ +RG+D+ VS VI D P E+++HRIGR
Sbjct: 305 AERDTIMREFRS------GSSRVLITTDILARGIDVQQVSLVINYDLPSNRENYIHRIGR 358
Query: 556 TARAGCEGESLLFL 569
+ R G +G ++ F+
Sbjct: 359 SGRFGRKGVAINFV 372
>At1g20920 [A] KOG0334 RNA helicase
Length = 1166
Score = 120 bits (302), Expect = 6e-27
Identities = 123/497 (24%), Positives = 209/497 (41%), Gaps = 73/497 (14%)
Query: 87 KRSRFDNSSNVEQPARVTQPLQLNSQIVSSLFTSSRNIDTVTNSNAHDEKAEVTYSNAPL 146
K+++ + S V+ +P + N I + SR N+ + + +V + P
Sbjct: 469 KKTKAEKLSLVDHSKIEYEPFRKNFYI--EVKDISRMTQEEVNTYRKELELKVHGKDVPR 526
Query: 147 VGDTFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFL 206
+ G+T ++ + K+ KP IQ +P + ++ + + A+TGSGKTL F+
Sbjct: 527 PIKFWHQTGLTSKILDTMK-KLNYEKPMPIQTQALPIIMSGRDCIGV-AKTGSGKTLGFV 584
Query: 207 LPIFQSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCL-LIGGER 265
LP+ + I + G LV+ PTREL QI+ + ++ + C+ + GG
Sbjct: 585 LPMLRHIKD-QPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSK--PLGIRCVPVYGGSG 641
Query: 266 KKSEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETL 325
+ + L++G ++ TPGR++D L T K + ++V+DE D++ ++GFE +
Sbjct: 642 VAQQISELKRGTEIVVCTPGRMIDIL-CTSSGKITNLRRVTFLVMDEADRMFDMGFEPQI 700
Query: 326 KEILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTET 385
I+ I P+R VL SAT V L L I G +
Sbjct: 701 TRIIQNIR------------PER-QTVLFSATFPRQVETLARKVLNKPVEIQVGGR---- 743
Query: 386 TTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHY 445
+ V + Q + + P R + L L G S+ + +VF+ + D Y
Sbjct: 744 SVVNKDITQLVEVRPESDRFLRLLELL----------GEWSEKGKILVFVQSQEKCDALY 793
Query: 446 EVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHF 505
D + C LHG Q R +T+ F
Sbjct: 794 -------------------------------RDMIKSSYPCLSLHGGKDQTDRESTISDF 822
Query: 506 ATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGES 565
ND +L T VA+RGLD+ + V+ D P ED++HR+GRT RAG +G +
Sbjct: 823 --KNDVCN----LLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCA 876
Query: 566 LLFLLPGEEEGYMDYIK 582
+ F+ + + D +K
Sbjct: 877 VTFISEDDAKYAPDLVK 893
>7298989 [A] KOG0336 ATP-dependent RNA helicase
Length = 703
Score = 120 bits (302), Expect = 6e-27
Identities = 120/410 (29%), Positives = 179/410 (43%), Gaps = 85/410 (20%)
Query: 167 KMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITR--QS 224
KM SKP+ IQ P LQ +D+ AQTG+GKTLAFLLP I + Q+ R +
Sbjct: 300 KMGFSKPSPIQSQAWPILLQG-HDMIGIAQTGTGKTLAFLLP--GMIHTEYQSTPRGTRG 356
Query: 225 GCFALVVTPTRELANQI------YQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGAN 278
G LV+ PTRELA QI Y A C + GG + + + L +GA
Sbjct: 357 GANVLVLAPTRELALQIEMEVKKYSFRGMKAVCVY--------GGGNRNMQISDLERGAE 408
Query: 279 FIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDID 338
II TPGR+ D + + ++ Y+VLDE D+++++GFE +++++ +DI
Sbjct: 409 IIICTPGRLNDLIMANVID----VSTITYLVLDEADRMLDMGFEPQIRKVM-----LDI- 458
Query: 339 THQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVI 398
P R ++ SAT V +L ++N + G T Q+++ +
Sbjct: 459 ------RPDR-QTIMTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQIIKLMED 511
Query: 399 VPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGL 458
K +T K S +D + I+F D
Sbjct: 512 DMDKFNTIT----------SFVKNMSSTD--KIIIFCGRKVRAD---------------- 543
Query: 459 VGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLI 518
D + LT + C +HG+ Q R + D G I
Sbjct: 544 --DLSSELTLDGFMTQC-------------IHGNRDQMDREQAIA------DIKSGVVRI 582
Query: 519 LFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLF 568
L TDVASRGLD+ ++ VI D P +E+++HR+GRT RAG +G S+ F
Sbjct: 583 LVATDVASRGLDIEDITHVINYDFPHNIEEYVHRVGRTGRAGRQGTSISF 632
>CE11190 [A] KOG0347 RNA helicase
Length = 746
Score = 120 bits (301), Expect = 8e-27
Identities = 120/426 (28%), Positives = 194/426 (45%), Gaps = 50/426 (11%)
Query: 167 KMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSIL-----SLGQNIT 221
+M S+PT+IQ V+P ++ + D+ A+TGSGKTLAF +P+ +L S T
Sbjct: 172 QMGFSEPTEIQSAVLPAAVRDRQDVLGAAETGSGKTLAFGIPLVARLLESSDDSQETEST 231
Query: 222 RQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFII 281
G AL+V PTREL QI + + L + ++ G + K E+ ++ + ++
Sbjct: 232 EVRGPRALIVAPTRELVIQIMKHINALISTTQLIATSIVGGLAQVKQERIISQQRPDIVV 291
Query: 282 GTPGRVLDHLQNTKVIKEQLA--PSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDT 339
TPGR+ +Q + E LA L+ +V+DE D+++E G+ L ILN IH +
Sbjct: 292 ATPGRLWAMMQEAET-GEFLAEWKDLKCLVVDETDRMVEEGYFAELTHILNKIH----EE 346
Query: 340 HQFPKLPKRILHVLCSATVK-GNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVI 398
+ KL + SAT+ + + K +SS QK + K +
Sbjct: 347 SEKEKLQTLVF----SATLTFAKAQDVAEEEKKKAKELSSQQKIQRLIKLTGLRENKHKV 402
Query: 399 VPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGL 458
+ L G+ + + G+ + ++V+L + + G
Sbjct: 403 ID----LTRQMGTAGCLVEARINCGNLLEKDTSLVYL------------LTRYPGRTIVF 446
Query: 459 VG--DTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKH 516
V D AR L S+L N DP + LH + Q+ R L+ F ++ K+
Sbjct: 447 VNSIDAARRL---YSVLKSVN--IDPMI----LHAKMIQKQRLKNLEKF------SESKN 491
Query: 517 LILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEEEG 576
+L TDVA+RGLD+ + VI P VE ++HR GRTARA G +++ + P +
Sbjct: 492 AVLLATDVAARGLDIQGIDHVIHYQVPKKVEIYIHRSGRTARASHRGLTVVLVDPPSRQF 551
Query: 577 YMDYIK 582
YM K
Sbjct: 552 YMKLCK 557
>At3g22310 [A] KOG0331 ATP-dependent RNA helicase
Length = 610
Score = 120 bits (301), Expect = 8e-27
Identities = 128/469 (27%), Positives = 194/469 (41%), Gaps = 86/469 (18%)
Query: 106 PLQLNSQIVSSLFTSSRNIDTVTNSNAHDEKAEVTYSNAPLVGDTFDSFGITDTMVSHLN 165
P + S IVSS +++ ++ +E S+ G GI+ +V L
Sbjct: 73 PSEFRSSIVSSAGFAAQEYAPSYENDGGIGDSESVGSSGGGDGLAIADLGISPEIVKALK 132
Query: 166 VKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSG 225
+ I K IQK V+ P ++ + D+ A+TG+GKTLAF +PI I+ R
Sbjct: 133 GR-GIEKLFPIQKAVLEPAMEGR-DMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKN 190
Query: 226 CFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPG 285
LV+ PTRELA QV E + L L GG + L G + +GTPG
Sbjct: 191 PQCLVLAPTRELAR---QVEKEFRESAPSLDTICLYGGTPIGQQMRELNYGIDVAVGTPG 247
Query: 286 RVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKL 345
R++D ++ + + +++VVLDE D+++++GF E ++ IL KL
Sbjct: 248 RIIDLMKRGALNLSE----VQFVVLDEADQMLQVGFAEDVEIILQ-------------KL 290
Query: 346 PKRILHVLCSATVKGNVTKLGNVTLQNYKLI----SSGQKQTETTT---VPDQLLQKIVI 398
P + ++ SAT+ + L L N I S QK + T + + I
Sbjct: 291 PAKRQSMMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASI 350
Query: 399 VPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGL 458
+ P ++ G TQ +K D R L+ S Y+ + H
Sbjct: 351 IGPLVKEHGKGGKCIVFTQ------TKRDADRLAFGLAKS------YKCEALH------- 391
Query: 459 VGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLI 518
G +SQ R TL F N + I
Sbjct: 392 --------------------------------GDISQAQRERTLAGFRDGNFS------I 413
Query: 519 LFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLL 567
L TDVA+RGLD+P+V VI + P E +HR GRT RAG +G ++L
Sbjct: 414 LVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAIL 462
>SPAC22F3.08c [A] KOG0344 ATP-dependent RNA helicase
Length = 481
Score = 119 bits (298), Expect = 2e-26
Identities = 119/422 (28%), Positives = 178/422 (41%), Gaps = 89/422 (21%)
Query: 167 KMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGC 226
K I++ T IQ+ IP + ++ DL A TGSGKT+A+L PI Q + + G
Sbjct: 63 KQNITECTTIQRYAIPT-IGSKRDLLACAPTGSGKTIAYLFPILQKL-----QLHVPGGY 116
Query: 227 FALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGR 286
A++V PTREL QIY+ +L+ + L E+ + + +LR+ + IGTP R
Sbjct: 117 RAIIVAPTRELCEQIYRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKYDMCIGTPMR 176
Query: 287 VLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLP 346
++ +Q ++ + + V+DE D+L E GF E IL+
Sbjct: 177 LVQAIQTGLSFEK-----VEFFVMDEADRLFEPGFIEQTDHILSAC------------TS 219
Query: 347 KRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLL------QKIVIVP 400
I L SAT+ V +L V + I G K T ++ +LL KIVI
Sbjct: 220 SNICKSLFSATIPSRVEELAKVVTVDPIRIIVGLKDAATDSIDQRLLFVGSDTSKIVI-- 277
Query: 401 PKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVG 460
LR + G L R ++F+ + Y D H G++
Sbjct: 278 --LRQMISNGELK---------------PRVVIFVQDIERAKALYTEL-LFDEIHVGVI- 318
Query: 461 DTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILF 520
HG L Q R L F KG+ +L
Sbjct: 319 -----------------------------HGELPQAKREEALAKF------RKGEIWVLI 343
Query: 521 CTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEEEGYMDY 580
TD+ +RG+D V VI D P +V ++HRIGRT RAG G+++ F +E+G +Y
Sbjct: 344 ATDLLARGIDFHGVKMVINFDFPQSVHSYIHRIGRTGRAGNTGQAVTFFT--KEDG--EY 399
Query: 581 IK 582
IK
Sbjct: 400 IK 401
>Hs4503529 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 406
Score = 117 bits (294), Expect = 5e-26
Identities = 121/454 (26%), Positives = 199/454 (43%), Gaps = 90/454 (19%)
Query: 121 SRNIDTVTNSNAHD--EKAEVTYSNAPLVGDTFDSFGITDTMVSHLNVKMKISKPTKIQK 178
S + D+ + N D E V SN + D+FD ++++++ + KP+ IQ+
Sbjct: 2 SASQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYA-YGFEKPSAIQQ 60
Query: 179 LVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVTPTRELA 238
I P ++ D+ AQ+G+GKT F + I Q I L T+ ALV+ PTRELA
Sbjct: 61 RAILPCIKGY-DVIAQAQSGTGKTATFAISILQQI-ELDLKATQ-----ALVLAPTRELA 113
Query: 239 NQIYQVTSELAQ----CCHFLVPCLLIGGERKKSEKARLRKGA-NFIIGTPGRVLDHLQN 293
QI +V L CH IGG ++E +L+ A + I+GTPGRV D L
Sbjct: 114 QQIQKVVMALGDYMGASCH-----ACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLN- 167
Query: 294 TKVIKEQLAPS-LRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRILHV 352
+ L+P ++ VLDE D+++ GF++ + +I F KL V
Sbjct: 168 ----RRYLSPKYIKMFVLDEADEMLSRGFKDQIYDI-------------FQKLNSNTQVV 210
Query: 353 LCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSL 412
L SAT+ +V ++ +++ I + E T+ I + + +L TL
Sbjct: 211 LLSATMPSDVLEVTKKFMRDPIRI---LVKKEELTLEGIRQFYINVEREEWKLDTLCDLY 267
Query: 413 TTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSI 472
T+T +T+ ++F++ VD+ E + D
Sbjct: 268 ETLT-----------ITQAVIFINTRRKVDWLTEKMHARD-------------------- 296
Query: 473 LPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLP 532
+HG + Q+ R ++ F + G +L TD+ +RG+D+
Sbjct: 297 -----------FTVSAMHGDMDQKERDVIMREFRS------GSSRVLITTDLLARGIDVQ 339
Query: 533 HVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESL 566
VS VI D P E+++HRIGR R G +G ++
Sbjct: 340 QVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAI 373
>At5g62190 [A] KOG0331 ATP-dependent RNA helicase
Length = 671
Score = 117 bits (294), Expect = 5e-26
Identities = 107/388 (27%), Positives = 169/388 (42%), Gaps = 92/388 (23%)
Query: 190 DLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGC----FALVVTPTRELANQI---- 241
DL A+TG GKTLAF+LPI +S+++ R+ G LV+ PTRELA Q+
Sbjct: 135 DLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADF 194
Query: 242 --YQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLDHLQNTKVIKE 299
Y + L+ CC L GG+ ++ +L++G + ++GTPGR+ DH++ +
Sbjct: 195 DAYGGSLGLSSCC-------LYGGDSYPVQEGKLKRGVDIVVGTPGRIKDHIERQNLDFS 247
Query: 300 QLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRILHVLCSATVK 359
L++ VLDE D+++ +GF E ++ IL + ++ +L SAT+
Sbjct: 248 Y----LQFRVLDEADEMLRMGFVEDVELILGKVED-----------STKVQTLLFSATLP 292
Query: 360 GNVTKLGNVTL----QNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTI 415
V + N L + L+ + + + + ++ I I K + L + +
Sbjct: 293 SWVKNISNRFLKRDQKTIDLVGNDKMKASNS------VRHIAIPCNKAAMARLIPDIISC 346
Query: 416 TQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILPC 475
Y G +TI+F V E+ DG+
Sbjct: 347 ----YSSGG-----QTIIFAETKVQVS---ELSGLLDGSR-------------------- 374
Query: 476 FNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVS 535
LHG + Q R TL F GK L T+VA+RGLD+ V
Sbjct: 375 ------------ALHGEIPQSQREVTLAGF------RNGKFATLVATNVAARGLDINDVQ 416
Query: 536 TVIEMDPPFAVEDHLHRIGRTARAGCEG 563
+I+ +PP VE ++HR GRT RAG G
Sbjct: 417 LIIQCEPPREVEAYIHRSGRTGRAGNTG 444
>At1g54270 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 412
Score = 117 bits (294), Expect = 5e-26
Identities = 118/442 (26%), Positives = 198/442 (44%), Gaps = 83/442 (18%)
Query: 147 VGDTFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFL 206
V ++FD+ G+ + ++ + KP+ IQ+ I PF + D+ AQ+G+GKT F
Sbjct: 37 VHESFDAMGLQENLLRGIYA-YGFEKPSAIQQRGIVPFCKGL-DVIQQAQSGTGKTATFC 94
Query: 207 LPIFQSI-LSLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGER 265
+ Q + +L Q C ALV+ PTRELA QI +V L V +GG
Sbjct: 95 SGVLQQLDYALLQ-------CQALVLAPTRELAQQIEKVMRALGDYQGVKVHAC-VGGTS 146
Query: 266 KKSEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPS-LRYVVLDEGDKLMELGFEET 324
+ ++ L+ G + ++GTPGRV D L+ ++ L P ++ VLDE D+++ GF++
Sbjct: 147 VREDQRILQAGVHVVVGTPGRVFDMLR-----RQSLRPDCIKMFVLDEADEMLSRGFKDQ 201
Query: 325 LKEILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTE 384
+ +I F LP +I + SAT+ ++ + K + K+ E
Sbjct: 202 IYDI-------------FQLLPPKIQVGVFSATMPPEALEITRKFMS--KPVRILVKRDE 246
Query: 385 TTTVPDQLLQKIVIVPPK-LRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDF 443
T + + Q V V + +L TL T+ +T++++F++ VD+
Sbjct: 247 LTL--EGIKQFYVNVEKEDWKLETLCDLYETLA-----------ITQSVIFVNTRRKVDW 293
Query: 444 HYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLK 503
+ S D V T HG + Q TR ++
Sbjct: 294 LTDKMRSRDHT----VSAT---------------------------HGDMDQNTRDIIMR 322
Query: 504 HFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEG 563
F + G +L TD+ +RG+D+ VS VI D P E++LHRIGR+ R G +G
Sbjct: 323 EFRS------GSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKG 376
Query: 564 ESLLFLLPGEEEGYMDYIKPYH 585
++ F+ ++ D K Y+
Sbjct: 377 VAINFVTLDDQRMLFDIQKFYN 398
>7291960_2 [A] KOG0337 ATP-dependent RNA helicase
Length = 883
Score = 117 bits (294), Expect = 5e-26
Identities = 116/413 (28%), Positives = 177/413 (42%), Gaps = 74/413 (17%)
Query: 151 FDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIF 210
F S G+ ++ + K PT IQ+ IP L+ + D+ A+TGSGKT FL+P+F
Sbjct: 97 FQSMGLGFELIKGIT-KRGYKVPTPIQRKTIPLILEGR-DVVAMAKTGSGKTACFLIPLF 154
Query: 211 QSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEK 270
+ + Q G AL+++PTRELA Q Y+ EL + L L++GG+ S+
Sbjct: 155 EKL----QRREPTKGARALILSPTRELAVQTYKFIKELGRFME-LKSILVLGGDSMDSQF 209
Query: 271 ARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILN 330
+ + + I+ TPGR L HL +K S+ YVV DE D+L E+GF E L E L+
Sbjct: 210 SAIHTCPDVIVATPGRFL-HLCVEMDLKLN---SIEYVVFDEADRLFEMGFGEQLNETLH 265
Query: 331 IIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPD 390
+LP V+ SAT+ + + L + LI + + +PD
Sbjct: 266 -------------RLPSSRQTVMFSATLPKLLVEFARAGLNDPVLI----RLDVESKLPD 308
Query: 391 QLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSS 450
L K + P R L L + ++T+VF H E+ S
Sbjct: 309 ALALKFLYCRPDDRYTALVVLLKYVIPVQ---------SQTVVFA----GTQHHVELIS- 354
Query: 451 HDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNND 510
+LT + + ++ SL R F
Sbjct: 355 -------------YILT-------------EAGISNASVYSSLDPAARKINTAKFVNK-- 386
Query: 511 ATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEG 563
K +L TDVA+RG+D+P + V+ + P + +HR+GR ARAG G
Sbjct: 387 ----KVSVLIVTDVAARGIDIPSLDFVVNLHFPGKPKLFVHRVGRCARAGRTG 435
>7302399 [A] KOG0347 RNA helicase
Length = 813
Score = 117 bits (293), Expect = 6e-26
Identities = 129/504 (25%), Positives = 209/504 (40%), Gaps = 104/504 (20%)
Query: 173 PTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITR---------- 222
PT+IQ L +P + + D+ A+TGSGKTLAF +P+ I+ L Q R
Sbjct: 238 PTQIQALTLPAAIHGKKDILGAAETGSGKTLAFGIPMLAGIMELKQRNIRSGIRKAPKVK 297
Query: 223 ----------------------------------------QSGCFALVVTPTRELANQIY 242
Q+ + LV+TPTRELA Q+
Sbjct: 298 GQQPEPAADEHELTPPPEELDHVSGASDEESDAEEQAQRVQTPLYGLVLTPTRELAVQVK 357
Query: 243 QVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLD-HLQNTKVIKEQL 301
A+ V + G K E+ LR+ + ++ TPGR+ + + Q + + +
Sbjct: 358 NHLVAAAKYTGIRVAAIFGGLAVAKQERV-LRQCPDIVVATPGRLWELYAQGNRHLGK-- 414
Query: 302 APSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKL----PKRILHVLCSAT 357
+ ++V+DE D+++E G E L+ +L +++ + HQ ++H L
Sbjct: 415 IEDVSFLVIDETDRMVEKGHFEELRSLLKVLNSDEQKKHQRQNFVYSATLTLVHDLPDHM 474
Query: 358 VKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSLT-TIT 416
K NV K KQT + + L++++ I PK+ +T + T+T
Sbjct: 475 QKRNVGKRPKFV-----------KQTVDQKI-ESLIEELGISQPKIVDITSSQQTAQTLT 522
Query: 417 QKHYKEGSKSDVTRTIVFLSCSDSVDFH-YEVFSSHDGNHRGLVG--DTARLLTKGNSIL 473
+ L D D+H Y H G D + L +L
Sbjct: 523 ESR--------------LLCPIDHKDYHLYYFIQRHPGRTIVFCNSIDCVKRLATLFGLL 568
Query: 474 PCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPH 533
C +P LH ++ Q+ R L+ F D+ G +L TDVA+RGLD+P+
Sbjct: 569 DC-----NP----LPLHANMIQKQRLKNLERF---RDSPTG---LLIATDVAARGLDIPN 613
Query: 534 VSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEEEGYMDYIKPY-HPKGWKLL 592
V VI P E+++HR GRTARA G +++F+ PGE + Y+ K + L
Sbjct: 614 VEHVIHYQVPRTSENYVHRSGRTARANKHGITVMFMEPGEVKSYVKLYKTLERTEDLPLF 673
Query: 593 TYDEQVLRPAFEGLNVRRTDKKKE 616
E+ + E +N+ R K+E
Sbjct: 674 PILERFMGAVRERVNLARDLDKEE 697
>CE09901 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 117 bits (292), Expect = 8e-26
Identities = 116/445 (26%), Positives = 196/445 (43%), Gaps = 93/445 (20%)
Query: 134 DEKAEVTYSNAPLVG--DTFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDL 191
D+ A V + ++ V TFD G+ + ++ + KP+ IQ+ +P L+A+ D+
Sbjct: 9 DDMATVEFESSEEVNVIPTFDKMGLREDLLRGIYA-YGFEKPSAIQQRAVPAILKAR-DV 66
Query: 192 FIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQC 251
AQ+G+GKT F + + QS+ T+ AL+++PTRELA QI +V L
Sbjct: 67 IAQAQSGTGKTATFSISVLQSL------DTQVRETQALILSPTRELAVQIQKVVLALGD- 119
Query: 252 CHFLVPC-LLIGGERKKSEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVL 310
+ V C IGG + +L G + + GTPGRV D ++ + +++ +VL
Sbjct: 120 -YMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRR----RNLRTRAIKLLVL 174
Query: 311 DEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTL 370
DE D+++ GF+E L +I + LP VL SAT+ + ++
Sbjct: 175 DEADEMLNKGFKEQLYDI-------------YRYLPPGAQVVLLSATLPHEILEM----- 216
Query: 371 QNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSD--- 427
++ T P ++L K +L L + + ++ +K + D
Sbjct: 217 -----------TSKFMTDPIRILVK----RDELTLEGIKQFFVAVDREEWKFDTLIDLYD 261
Query: 428 ---VTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNV 484
+T+ ++F + VD+ LT + + N
Sbjct: 262 TLTITQAVLFCNTRRKVDW----------------------LT---------DKMKEANF 290
Query: 485 ICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPF 544
+HG + Q+ R +K F G +L TDV +RGLD+P VS VI D P
Sbjct: 291 TVSSMHGDMEQKDRDEVMKEFRA------GTTRVLISTDVWARGLDVPQVSLVINYDLPN 344
Query: 545 AVEDHLHRIGRTARAGCEGESLLFL 569
E ++HRIGR+ R G +G ++ F+
Sbjct: 345 NRELYIHRIGRSGRFGRKGVAINFV 369
>Hs22057246 [A] KOG0336 ATP-dependent RNA helicase
Length = 631
Score = 115 bits (289), Expect = 2e-25
Identities = 115/421 (27%), Positives = 186/421 (43%), Gaps = 78/421 (18%)
Query: 166 VKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSG 225
+++ I KPT IQ P LQ DL + AQTG+GKTL++L+P F + S + +++G
Sbjct: 238 IRVGIVKPTPIQSQAWPIILQGI-DLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNG 296
Query: 226 CFALVVTPTRELANQIYQVTSELAQCCHF----LVPCLLIGGERKKSEKARLRKGANFII 281
LV+TPTRELA + A+C + L + GG + + + KG + II
Sbjct: 297 PGMLVLTPTRELALHVE------AECSKYSYKGLKSICIYGGRNRNGQIEDISKGVDIII 350
Query: 282 GTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQ 341
TPGR+ D N V S+ Y+V+DE DK++++ FE +++IL +D+
Sbjct: 351 ATPGRLNDLQMNNSVNLR----SITYLVIDEADKMLDMEFEPQIRKIL-----LDV---- 397
Query: 342 FPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPP 401
P R V+ SAT V +L L++ ++ G Q +
Sbjct: 398 ---RPDR-QTVMTSATWPDTVRQLALSYLKDPMIVYVGNLNLVAVNTVKQNI-------- 445
Query: 402 KLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGD 461
+VT +TQ+ + S +D + I+F+S H S D N +G+ +
Sbjct: 446 ---IVTTEKEKRALTQEFVENMSPND--KVIMFVS-----QKHIADDLSSDFNIQGISAE 495
Query: 462 TARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFC 521
+ LHG+ Q + ++ F + N IL
Sbjct: 496 S--------------------------LHGNSEQSDQERAVEDFKSGNIK------ILIT 523
Query: 522 TDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEEEGYMDYI 581
TD+ SRGLDL V+ V D P ++ ++HR+G R G G S+ + + + + I
Sbjct: 524 TDIVSRGLDLNDVTHVYNYDFPRNIDVYVHRVGYIGRTGKTGTSVTLITQRDSKMAGELI 583
Query: 582 K 582
K
Sbjct: 584 K 584
>Hs4503531 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 407
Score = 115 bits (288), Expect = 2e-25
Identities = 118/437 (27%), Positives = 191/437 (43%), Gaps = 88/437 (20%)
Query: 139 VTYSNAPLVGDTFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTG 198
V SN + D FD + ++++ + KP+ IQ+ I P ++ D+ AQ+G
Sbjct: 23 VIESNWNEIVDNFDDMNLKESLLRGIYA-YGFEKPSAIQQRAIIPCIKGY-DVIAQAQSG 80
Query: 199 SGKTLAFLLPIFQSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQ----CCHF 254
+GKT F + I Q L + T+ ALV+ PTRELA QI +V L CH
Sbjct: 81 TGKTATFAISILQQ-LEIEFKETQ-----ALVLAPTRELAQQIQKVILALGDYMGATCH- 133
Query: 255 LVPCLLIGGERKKSEKARLRKGA-NFIIGTPGRVLDHLQNTKVIKEQLAPS-LRYVVLDE 312
IGG ++E +L+ A + ++GTPGRV D L + L+P ++ VLDE
Sbjct: 134 ----ACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLN-----RRYLSPKWIKMFVLDE 184
Query: 313 GDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQN 372
D+++ GF++ + EI F KL I V SAT+ +V ++ +++
Sbjct: 185 ADEMLSRGFKDQIYEI-------------FQKLNTSIQVVFASATMPTDVLEVTKKFMRD 231
Query: 373 YKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTI 432
I + E T+ I + + +L TL T+T +T+ +
Sbjct: 232 PIRI---LVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLT-----------ITQAV 277
Query: 433 VFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGS 492
+FL+ VD+ E + D LHG
Sbjct: 278 IFLNTRRKVDWLTEKMHARD-------------------------------FTVSALHGD 306
Query: 493 LSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHR 552
+ Q+ R ++ F + G +L TD+ +RG+D+ VS VI D P E+++HR
Sbjct: 307 MDQKERDVIMREFRS------GSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHR 360
Query: 553 IGRTARAGCEGESLLFL 569
IGR R G +G ++ F+
Sbjct: 361 IGRGGRFGRKGVAINFV 377
>7294064 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 687
Score = 115 bits (287), Expect = 3e-25
Identities = 122/434 (28%), Positives = 195/434 (44%), Gaps = 66/434 (15%)
Query: 167 KMKISKPTKIQKLVIPPFLQAQ--------NDLFIHAQTGSGKTLAFLLPIFQSILSLGQ 218
+MKI + +QK VIP L+A D+ + A TGSGKTLAF +PI Q L Q
Sbjct: 154 QMKIKRLFPVQKQVIPWILEAHAKPPPFRPRDICVSAPTGSGKTLAFAIPIVQ---LLSQ 210
Query: 219 NITRQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARL---RK 275
+ ALVV P ELA Q+Y+V SEL V CLL + + E+ +L K
Sbjct: 211 RV--DCKVRALVVLPVAELALQVYRVISELCSKTELEV-CLLSKQHKLEDEQEKLVEQYK 267
Query: 276 G-----ANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILN 330
G A+ ++ TPGR++DHL TK SL+++V+DE D++M+ F+ L + +
Sbjct: 268 GKYYSKADIVVTTPGRLVDHLHATKGF---CLKSLKFLVIDEADRIMDAVFQNWLYHLDS 324
Query: 331 IIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPD 390
+ + P LC A ++ + K Q +KL+ S T +
Sbjct: 325 HVKETTDQLLAGTQAP------LCYAELQASFGK------QPHKLLFSA-----TLSQDP 367
Query: 391 QLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSD-VTRTIVFLSCSDSVDFHYEVFS 449
+ LQ + + P+L L + + +EG+ ++ +T F+ + E +
Sbjct: 368 EKLQDLRLFQPRLFATVLT---MPVLKDATEEGADTEALTDPGQFVGRYTTPAELTEQYC 424
Query: 450 SHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICY--------------KLHGSLSQ 495
+ + L K L N +D + + +L G+LS
Sbjct: 425 VTELRLKPLTVFALVEKYKWKRFLCFTNSSDQATRLTFVLKVLFQKYSTKVSELSGNLSA 484
Query: 496 QTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGR 555
+ R L+ FA GK L C+D +RG+D+ V V+ + P + ++HR+GR
Sbjct: 485 KVRNERLRDFAA------GKINGLICSDALARGIDVADVDVVLSYETPRHITTYIHRVGR 538
Query: 556 TARAGCEGESLLFL 569
TARAG +G ++ L
Sbjct: 539 TARAGRKGTAVTVL 552
>7303950 [A] KOG0340 ATP-dependent RNA helicase
Length = 521
Score = 114 bits (285), Expect = 5e-25
Identities = 129/488 (26%), Positives = 209/488 (42%), Gaps = 81/488 (16%)
Query: 151 FDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIF 210
F G+ +V L K+ + T IQ+ IP L Q D A+TGSGKT AF LPI
Sbjct: 9 FQILGLRPWLVKQLT-KLGLKGATPIQQKCIPAILAGQ-DCIGAAKTGSGKTFAFALPIL 66
Query: 211 QSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEK 270
+ + FALV+TPT ELA QI + Q V C++ GG + E
Sbjct: 67 ERLSE------EPVSHFALVLTPTHELAYQISEQFLVAGQAMGVRV-CVVSGGTDQMVES 119
Query: 271 ARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILN 330
+L + + ++ PGR+ DHL +L+Y+V+DE D+++ F+E+L I
Sbjct: 120 QKLMQRPHIVVAMPGRLADHLTGCDTFS---FDNLKYLVVDEADRMLNGDFDESLSIIER 176
Query: 331 IIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPD 390
LPK ++ SAT+K + + + + S T D
Sbjct: 177 C-------------LPKTRQNLFFSATMKDFIKESSIFPIASDCFEWSQDSDVATVETLD 223
Query: 391 QLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSS 450
Q+ ++ R + L +L +K+ +E ++V + +
Sbjct: 224 ---QRYLLCADYDRDMVLIEAL----RKYREENENANV------------------MIFT 258
Query: 451 HDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNND 510
+ + L+ T + + N L F + Q+ R A L F +N
Sbjct: 259 NTKKYCQLLSMTLKNMEIDNVCLHGF----------------MRQKERVAALSRFKSNQI 302
Query: 511 ATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESL-LFL 569
T L TDVA+RGLD+P V V+ P ++++HR+GRTARAG +G S+ +F
Sbjct: 303 RT------LIATDVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRTARAGRKGMSISIFR 356
Query: 570 LPGEEEGYMDYIKPYHPKGWKLLT---YDEQVLRPAFEGLNV-RRTDKKKEDWDKHEAQA 625
P + E + + K LT D++++ F +NV RR + + D + + +A
Sbjct: 357 FPRDLELLAAIEEEINTK----LTEHPIDQRMVERIFMQVNVTRRESEMQLDNNDFDERA 412
Query: 626 WDNNATTW 633
+ TW
Sbjct: 413 QNYRRKTW 420
>At3g16840 [A] KOG0347 RNA helicase
Length = 833
Score = 114 bits (284), Expect = 7e-25
Identities = 119/472 (25%), Positives = 205/472 (43%), Gaps = 81/472 (17%)
Query: 167 KMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSIL------------ 214
++ +PTKIQK D+ A+TGSGKTLAF LPI Q +L
Sbjct: 208 RLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYAL 267
Query: 215 --SLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQCCHF-LVPCLLIGGERKKSEKA 271
Q AL++TPTRELA Q+ + A+ +VP ++GG + ++
Sbjct: 268 KGEEAQKYAADGYLRALIITPTRELALQVTEHLENAAKNLSVKVVP--IVGGMFSEKQER 325
Query: 272 RLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNI 331
RL++ ++ TPGR+ + + + +L SL + VLDE D+++E G L+ IL++
Sbjct: 326 RLKEKPEIVVATPGRLWELMSAGEKHLVEL-HSLSFFVLDEADRMVERGHFRELQSILDL 384
Query: 332 IHGIDIDTH---QFPKLPKRILHV--------LCSATVKGNVTKLGNVTLQNYKLISSGQ 380
+ D Q K +L+V + SAT+ L + + K SS
Sbjct: 385 LPVTDKPNEGKTQTVKSNDTVLNVPKKKRQTFVFSATI-----ALSSDFRKKLKRGSSKS 439
Query: 381 KQTETTTVPD-QLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSD 439
KQ+ + V ++L + + + ++ L + T+I +E F+ C +
Sbjct: 440 KQSSSGEVNSIEVLSERAGMRDNVAIIDL--TTTSILAPKIEES----------FIKCEE 487
Query: 440 SVD--FHYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNV----------ICY 487
+ Y + S H +G +I+ C + TD ++ +C
Sbjct: 488 KEKDAYLYYILSVHG---------------QGRTIVFCTSVTDLRHISGLLKILGLDVC- 531
Query: 488 KLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVE 547
L + Q+ R ++ F + + IL TD+ +RG+D+ +V T+I P + E
Sbjct: 532 TLFSEMKQRARLKSIDRFRASENG------ILIATDLVARGIDIKNVRTIIHYKLPHSAE 585
Query: 548 DHLHRIGRTARAGCEGESLLFLLPGEEEGYMDYIKPYHPKGWKLLTYDEQVL 599
++HR GRTARA +G S+ + P E + K + + K+ D +
Sbjct: 586 VYVHRCGRTARAFADGCSIALIEPNETSKFYTLCKSFSMESVKIFPLDNSYM 637
>CE27553 [A] KOG0337 ATP-dependent RNA helicase
Length = 853
Score = 113 bits (282), Expect = 1e-24
Identities = 112/418 (26%), Positives = 193/418 (45%), Gaps = 59/418 (14%)
Query: 167 KMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGC 226
K ++PT IQ+ IP + + D+ ++TGSGKT AF++P+ Q + +G
Sbjct: 41 KKGFNQPTPIQRKTIPCIMDGK-DVVAMSRTGSGKTAAFVIPMLQKLKRRDT-----TGI 94
Query: 227 FALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGR 286
AL+V+PTRELA Q ++V EL + CL +GG++ + + + + + + ++ TPGR
Sbjct: 95 RALMVSPTRELALQTFKVVKELGRFTGLRCACL-VGGDQIEEQFSTIHENPDILLATPGR 153
Query: 287 VLDHLQNTKVIKEQLAPS-LRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKL 345
+L H+ +++ L S ++YVV DE D+L E+GF++ L E L ++
Sbjct: 154 LL-HV----IVEMDLRLSYVQYVVFDEADRLFEMGFQDQLTETLK-------------RI 195
Query: 346 PKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRL 405
P+ +L SAT+ + L + L+ + V D+L + P +L
Sbjct: 196 PESRQTLLFSATLPKMLVDFAKAGLTDPMLV----RLDVDEKVSDKLSMVFCMCRPDEKL 251
Query: 406 VTLAGSLTTITQKHYKEGS--KSDVTRTIVFLSCSDSVDFHYE---VFSSHDGNHRGLVG 460
L K E S K +++ V L +D + VF + + +VG
Sbjct: 252 FALLHLCRNFCFKKLLETSLKKCKISKKKVPLLKKVRMDRENKQTVVFCATMKHVEYVVG 311
Query: 461 DTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILF 520
R + C ++ L R ++ F + ++ IL
Sbjct: 312 ILHR-----------------AGIDCSFVYSQLDATARKMNIQKF------HEKQNNILV 348
Query: 521 CTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEEEGYM 578
TDVA+RG+D+P + TVI + P + +HR+GR ARAG G + + L+ +E Y+
Sbjct: 349 VTDVAARGVDIPLLDTVINLHFPPKAKLFVHRVGRVARAGRSG-TAISLIANDELPYL 405
>YBR142w [A] KOG0347 RNA helicase
Length = 773
Score = 112 bits (279), Expect = 3e-24
Identities = 154/658 (23%), Positives = 267/658 (40%), Gaps = 140/658 (21%)
Query: 17 DVSDASETVSRGKITGGKWKDRRKAKMMMEGRKPRVRGEKRPLESDGAPTFE-------- 68
++ V GK+T KD +K++ + K +V ++ +E++ E
Sbjct: 48 EIDGVDVKVVDGKVTFVTKKD---SKVLKDSNKEKVGDDQESVENESGSDSESELLEFKN 104
Query: 69 --ELEASSSNSTSAQAPVEPKRSRFDNSSNVEQPARVTQPLQLNSQIVSSLFTSSRNIDT 126
+++ ++ S + E ++ ++S + V + + + ++F NID
Sbjct: 105 LDDIKEGELSAASYSSSDEDEQGNIESSKLTDPSEDVDEDVD-EDVLKENVFNKDINIDD 163
Query: 127 VTNSNAHDEKAEVTYSN-APLVGDTFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFL 185
++ N + ++N APL + T++ L + +PT+IQK IP +
Sbjct: 164 ISPVNLPE------WTNLAPL----------SMTILQSLQ-NLNFLRPTEIQKKSIPVIM 206
Query: 186 QAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVTPTRELANQIYQVT 245
Q D+ A TGSGKTLA+ +PI + ++S ++ +L+ TPTRELA +QVT
Sbjct: 207 QGV-DVMGKASTGSGKTLAYGIPIVEKLISNFSQKNKKP--ISLIFTPTRELA---HQVT 260
Query: 246 SELAQCCHFLVP-----CLLIGGERKKSEKARLRKGAN---FIIGTPGRVLDHLQNTKVI 297
L + C ++ L + G ++ RL K N +I TPGR L+ L+ +
Sbjct: 261 DHLKKICEPVLAKSQYSILSLTGGLSIQKQQRLLKYDNSGQIVIATPGRFLELLEKDNTL 320
Query: 298 KEQLAPSLRYVVLDEGDKLMELG----FEETLKEIL------------------NIIHGI 335
++ + + ++LDE D+L++ G FE+ +K +L +I
Sbjct: 321 IKRFS-KVNTLILDEADRLLQDGHFDEFEKIIKHLLVERRKNRENSEGSSKIWQTLIFSA 379
Query: 336 DIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPD----- 390
F KL + K N +L V I K T P+
Sbjct: 380 TFSIDLFDKLSSS--RQVKDRRFKNNEDELNAVIQHLMSKIHFNSKPVIIDTNPESKVSS 437
Query: 391 QLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSS 450
Q+ + ++ PP R + LT T++F + DSV V+ +
Sbjct: 438 QIKESLIECPPLERDLYCYYFLTMFP------------GTTLIFCNAIDSVK-KLTVYLN 484
Query: 451 HDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFAT--- 507
+ G +P F ++H S++Q+ R +L+ F
Sbjct: 485 NLG-------------------IPAF-----------QIHSSMTQKNRLKSLERFKQQSA 514
Query: 508 -------NNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAG 560
+N + +L +DVA+RGLD+P V VI P + + ++HR GRTARAG
Sbjct: 515 KQKTINHSNPDSVQLSTVLIASDVAARGLDIPGVQHVIHYHLPRSTDIYIHRSGRTARAG 574
Query: 561 CEGESLLFLLPGEEEGYMDYIKPYHPKGWKLLTYDEQVLRPAFEGLNVRRTDKKKEDW 618
EG S + P E G + ++ K L V LN R T++K W
Sbjct: 575 SEGVSAMICSPQESMGPLRKLR-------KTLATKNSV----STDLNSRSTNRKPIKW 621
>SPBC4F6.07c [A] KOG0347 RNA helicase
Length = 648
Score = 112 bits (279), Expect = 3e-24
Identities = 131/497 (26%), Positives = 208/497 (41%), Gaps = 69/497 (13%)
Query: 83 PVEPKRSRFDNSSNVEQPARVTQPLQ---LNSQIVSSLFTSSRNIDTVTNSNAHDEKAEV 139
P + K+ + + S ++ R + ++ L S++ S + ++ N+H
Sbjct: 64 PEKRKKDQKEASEKKKKGKRTSPTIEMTSLGSKVTSKNYNEFSTLEEEDEHNSHGVDVSA 123
Query: 140 TYSNAPLVGDTFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGS 199
+ F ++ M+ L+ K SKP IQ LVIP D+ A TGS
Sbjct: 124 -----------WAHFSLSPEMLGSLS-KAGFSKPMPIQSLVIPE-ASIGFDIIGKADTGS 170
Query: 200 GKTLAFLLPIFQSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCL 259
GKTLAF +PI + L +N+ + ALVV PTRELA+QI Q EL + +
Sbjct: 171 GKTLAFGIPILEHCL---RNVDAKY-VQALVVAPTRELAHQICQ-HFELIKPSPNIRVMS 225
Query: 260 LIGGERKKSEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMEL 319
+ GG + ++ L K + ++ TPGR+ + + ++ +VLDE D+L++
Sbjct: 226 ITGGLAVQKQQRLLNKHPHVVVATPGRLWSVINENNLTGN--FKKIKCLVLDEADRLLQK 283
Query: 320 G-FEETLK--EILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLI 376
FEE K EIL T F L +KGN+
Sbjct: 284 SHFEELSKLLEILGNPMHTQRQTFIFSATFDEGLQQRLKKNMKGNI-------------- 329
Query: 377 SSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLS 436
TE P + + K V K + + + + S V ++ +
Sbjct: 330 ------TEKYNSPMENMLKEVRFFGKPKFL----------DANPQSAVASRVLEGLIECA 373
Query: 437 CSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQ 496
++ + Y + + G + I P N+ P+ Y LH L Q+
Sbjct: 374 PAEKDLYLYYLIMRYPGKTMVFANGIEDI----KRITPFLNELKVPS---YPLHAQLDQK 426
Query: 497 TRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRT 556
R +L+ F N KG +L CTDVA+RG+D+P V+ VI P + ++HR GRT
Sbjct: 427 KRLQSLEKFKNN---PKG---VLVCTDVAARGIDIPSVTHVIHYHVPHTADMYVHRSGRT 480
Query: 557 ARAGCEGESLLFLLPGE 573
ARA +G S+L P E
Sbjct: 481 ARANEDGVSILMCGPKE 497
>SPAC1F5.10 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 394
Score = 112 bits (279), Expect = 3e-24
Identities = 112/442 (25%), Positives = 191/442 (42%), Gaps = 91/442 (20%)
Query: 135 EKAEVTYSNAPLVGDTFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIH 194
E E+T S +F+ + + ++ + P+ +Q I + + D+
Sbjct: 7 ENVELTTSEDVNAVSSFEEMNLKEDLLRGIYA-YGYETPSAVQSRAIIQICKGR-DVIAQ 64
Query: 195 AQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQCCHF 254
AQ+G+GKT F + I QSI L T+ AL+++PTRELA QI V L H
Sbjct: 65 AQSGTGKTATFSIGILQSI-DLSVRDTQ-----ALILSPTRELAVQIQNVVLALGD--HM 116
Query: 255 LVPC-LLIGGERKKSEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEG 313
V C IGG ++ +L G + + GTPGRV D ++ + +++ ++LDE
Sbjct: 117 NVQCHACIGGTSVGNDIKKLDYGQHVVSGTPGRVTDMIRR----RNLRTRNVKMLILDEA 172
Query: 314 DKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNY 373
D+L+ GF+E + +I + LP V+ SAT+ +V ++ N
Sbjct: 173 DELLNQGFKEQIYDI-------------YRYLPPGTQVVVVSATLPQDVLEMTN------ 213
Query: 374 KLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSD------ 427
+ TT P ++L K +L L L + ++ +K + D
Sbjct: 214 ----------KFTTNPVRILVK----RDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLT 259
Query: 428 VTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICY 487
+T+ ++F + VD+ E + N
Sbjct: 260 ITQAVIFCNSRRKVDWLTEKMR-------------------------------EANFTVT 288
Query: 488 KLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVE 547
+HG + Q+ R A ++ F +G +L CTD+ +RG+D+ VS VI D P E
Sbjct: 289 SMHGEMPQKERDAIMQDF------RQGNSRVLICTDIWARGIDVQQVSLVINYDLPANRE 342
Query: 548 DHLHRIGRTARAGCEGESLLFL 569
+++HRIGR+ R G +G ++ F+
Sbjct: 343 NYIHRIGRSGRFGRKGVAINFV 364
>CE28369 [A] KOG0335 ATP-dependent RNA helicase
Length = 644
Score = 110 bits (275), Expect = 8e-24
Identities = 78/224 (34%), Positives = 123/224 (54%), Gaps = 20/224 (8%)
Query: 120 SSRNIDTVTNSNAHDEK-----AEVTYSNAPLVGDTFDSFGITDTMVSHLNVKMKISKPT 174
S N+ T+S + +K EV+ + P + F+ G ++ ++N + SKPT
Sbjct: 89 SESNLFHRTDSGINFDKYENIPVEVSGDSVPAAIEHFNEAGFGPAVMENVN-RSGYSKPT 147
Query: 175 KIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCF------- 227
+QK IP L A DL AQTGSGKT AFLLPI Q IL+ G ++ +
Sbjct: 148 PVQKHSIPTLL-ANRDLMSCAQTGSGKTAAFLLPIIQHILAGGPDMVKPPAFTNGRRTYY 206
Query: 228 --ALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPG 285
ALV++PTRELA QI++ ++ + + L G E + + RLR G + +I TPG
Sbjct: 207 PCALVLSPTRELAIQIHKEATKFSYKSNIQTAILYGGRENYRDQVNRLRAGTHILIATPG 266
Query: 286 RVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEIL 329
R++D ++ + LA RY+VLDE D+++++GFE +++I+
Sbjct: 267 RLIDIIEQGFI---GLA-GCRYLVLDEADRMLDMGFEPQIRKIV 306
Score = 54.3 bits (129), Expect = 7e-07
Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 489 LHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVED 548
+HG L Q R L+ F + G+ IL T VA+RGLD+P+V VI D P ++
Sbjct: 412 IHGDLKQIERERNLELFRS------GQCPILVATAVAARGLDIPNVRHVINYDLPGDSDE 465
Query: 549 HLHRIGRTARAGCEGESLLF 568
++HRIGRT R G G + F
Sbjct: 466 YVHRIGRTGRCGNLGIATSF 485
>CE24451 [A] KOG0335 ATP-dependent RNA helicase
Length = 641
Score = 110 bits (275), Expect = 8e-24
Identities = 78/224 (34%), Positives = 123/224 (54%), Gaps = 20/224 (8%)
Query: 120 SSRNIDTVTNSNAHDEK-----AEVTYSNAPLVGDTFDSFGITDTMVSHLNVKMKISKPT 174
S N+ T+S + +K EV+ + P + F+ G ++ ++N + SKPT
Sbjct: 86 SESNLFHRTDSGINFDKYENIPVEVSGDSVPAAIEHFNEAGFGPAVMENVN-RSGYSKPT 144
Query: 175 KIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCF------- 227
+QK IP L A DL AQTGSGKT AFLLPI Q IL+ G ++ +
Sbjct: 145 PVQKHSIPTLL-ANRDLMSCAQTGSGKTAAFLLPIIQHILAGGPDMVKPPAFTNGRRTYY 203
Query: 228 --ALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPG 285
ALV++PTRELA QI++ ++ + + L G E + + RLR G + +I TPG
Sbjct: 204 PCALVLSPTRELAIQIHKEATKFSYKSNIQTAILYGGRENYRDQVNRLRAGTHILIATPG 263
Query: 286 RVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEIL 329
R++D ++ + LA RY+VLDE D+++++GFE +++I+
Sbjct: 264 RLIDIIEQGFI---GLA-GCRYLVLDEADRMLDMGFEPQIRKIV 303
Score = 54.3 bits (129), Expect = 7e-07
Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 489 LHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVED 548
+HG L Q R L+ F + G+ IL T VA+RGLD+P+V VI D P ++
Sbjct: 409 IHGDLKQIERERNLELFRS------GQCPILVATAVAARGLDIPNVRHVINYDLPGDSDE 462
Query: 549 HLHRIGRTARAGCEGESLLF 568
++HRIGRT R G G + F
Sbjct: 463 YVHRIGRTGRCGNLGIATSF 482
>YDL160c [A] KOG0326 ATP-dependent RNA helicase
Length = 506
Score = 109 bits (272), Expect = 2e-23
Identities = 116/454 (25%), Positives = 187/454 (40%), Gaps = 94/454 (20%)
Query: 121 SRNIDTVTNSNAHDEKAEVTYSNAP-------------LVGDTFDSFGITDTMVSHLNVK 167
+ N +T NSN ++ T N P G+TF+ F + ++ + +
Sbjct: 5 NNNFNTNNNSNTDLDRDWKTALNIPKKDTRPQTDDVLNTKGNTFEDFYLKRELLMGI-FE 63
Query: 168 MKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCF 227
KP+ IQ+ IP + + D+ A+ G+GKT AF++P + + I
Sbjct: 64 AGFEKPSPIQEEAIPVAITGR-DILARAKNGTGKTAAFVIPTLEKVKPKLNKIQ------ 116
Query: 228 ALVVTPTRELANQIYQVTSELAQCCHFLVPCLLI-GGERKKSEKARLRKGANFIIGTPGR 286
AL++ PTRELA Q QV L + C + C++ GG + + RL + + ++GTPGR
Sbjct: 117 ALIMVPTRELALQTSQVVRTLGKHCG--ISCMVTTGGTNLRDDILRLNETVHILVGTPGR 174
Query: 287 VLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLP 346
VLD L + KV ++DE DK++ F+ +++IL+ + THQ
Sbjct: 175 VLD-LASRKVAD---LSDCSLFIMDEADKMLSRDFKTIIEQILSFLP----PTHQ----- 221
Query: 347 KRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLV 406
+L SAT V + ++ K E + + L+ I +
Sbjct: 222 ----SLLFSATFPLTVKEF---------MVKHLHKPYEINLMEELTLKGITQYYAFVEER 268
Query: 407 TLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLL 466
L T+ SK + + I+F + ++ V+ LL
Sbjct: 269 QKLHCLNTLF-------SKLQINQAIIFCNSTNRVE----------------------LL 299
Query: 467 TKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVAS 526
K D CY H + QQ R F +GK L C+D+ +
Sbjct: 300 AK---------KITDLGYSCYYSHARMKQQERNKVFHEF------RQGKVRTLVCSDLLT 344
Query: 527 RGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAG 560
RG+D+ V+ VI D P E +LHRIGR+ R G
Sbjct: 345 RGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFG 378
>7294824 [K] KOG4284 DEAD box protein
Length = 1028
Score = 109 bits (272), Expect = 2e-23
Identities = 116/464 (25%), Positives = 196/464 (42%), Gaps = 77/464 (16%)
Query: 144 APLVGDTFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTL 203
AP TF+ + +++ L + PTKIQ IP L A+ DL I +++G+GKTL
Sbjct: 20 APGQVKTFEELRLYRNLLNGLK-RNNFVTPTKIQAAAIPMAL-AKMDLIIQSKSGTGKTL 77
Query: 204 AFLLPIFQSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGG 263
+++ + Q S NI + A++V PTRELA Q+ L + IGG
Sbjct: 78 IYVIAVVQ---SFNPNINQP---HAMIVVPTRELAIQVQDTFFHLCKSFRDFKCSAFIGG 131
Query: 264 ERKKSEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMEL-GFE 322
++ R+ + + IIGTPGR+L HL +V LR +VLDE D+L + +
Sbjct: 132 TDVAKDRKRMNE-SRVIIGTPGRLL-HLYENRVFD---VSKLRLLVLDEADQLYQTKSLQ 186
Query: 323 ETLKEILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQ 382
T+ +++ +PK + CSAT N+ + + LIS+ ++
Sbjct: 187 HTVSKLIE-------------AMPKNRQIIACSATYDQNLDERLAKVMDKPMLISNSERA 233
Query: 383 TETTTVPD---QLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSD 439
T + +L Q+ V + + G + Q Y++ I+F S
Sbjct: 234 TVLLGIRQFVYELPQQNNSVEEMRLKLQILGQI--FNQLPYEQ--------AIIFASSQM 283
Query: 440 SVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRT 499
D Y+ + + G + C+ + G++ Q R
Sbjct: 284 RAD-SYKNYLTASG------------------------------IDCHLISGAMEQSERL 312
Query: 500 ATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARA 559
+ + N + IL TD+ +RG+D PH + VI +DPP +LHRIGR R
Sbjct: 313 HVFEGY--RNFTMR----ILVATDLMARGVDSPHANLVINIDPPQDHVTYLHRIGRAGRF 366
Query: 560 GCEGESLLFLLPGEEEGYMDYIKPYHPKGWKLLTYDEQVLRPAF 603
G +G ++ F+ +E + W +L + ++ + F
Sbjct: 367 GSKGIAITFIASKKESQRFREMSKKIATAWSVLEFPKEPMPNEF 410
>7293941 [A] KOG0344 ATP-dependent RNA helicase
Length = 594
Score = 109 bits (272), Expect = 2e-23
Identities = 136/520 (26%), Positives = 203/520 (38%), Gaps = 96/520 (18%)
Query: 52 VRGEKRPLESDGAPTFEELEASSSNSTSAQAPVEPKRSRFDNSSNVEQPARVTQPLQLNS 111
V+ E+ + + F L+ SSN +PKR + + + P +L
Sbjct: 43 VKSEESDKDDEDITEFRLLDGDSSN--------QPKRKK-------PKKEKTLSPKELEI 87
Query: 112 QIVSSLFTSSRNIDTVTNSNAHDEKAEVTYSNAPLVGDTFDSFGITDTMVSHLNVKM--- 168
Q + N V N P D+F + M+ L +
Sbjct: 88 QKAAE----------EANETRKQYGIRVLGKNVPPPVDSFGTLTRDFKMLPRLQQNLLSR 137
Query: 169 KISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFA 228
PT IQ +P LQ + L A TGSGKTLAFL PI G + +G A
Sbjct: 138 NFDHPTPIQMQALPVLLQ-RRALMACAPTGSGKTLAFLTPIIN-----GLRAHKTTGLRA 191
Query: 229 LVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVL 288
LV+ PTRELA QIY+ +EL + + E K+ A ++ + ++ TP RV
Sbjct: 192 LVLAPTRELAQQIYRECAELTRETGLRTHFISKVSEAKQKHGAECKQRYDILVSTPNRVR 251
Query: 289 DHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKR 348
LQ + + + + VLDE D+LME G + KE L+ D + P +
Sbjct: 252 FLLQQEPPLLD--LSHVEWFVLDEADRLMEEG-QNNFKEQLD-------DIYAACSNPTK 301
Query: 349 ILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTL 408
+ SAT V K L+N I+ G + + T TV +LL V
Sbjct: 302 CV-AFFSATYTVPVAKWALRHLKNLVRITIGVQNSATETVQQELL-----------FVGS 349
Query: 409 AGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTK 468
G + ++G + V +VF+ + +E LL
Sbjct: 350 EGGKLVAIRDLVRQGLQPPV---LVFVQSKERAKQLFE-----------------ELLYD 389
Query: 469 GNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRG 528
G ++ +VI H SQ R +K F +G +L CT++ RG
Sbjct: 390 GINV----------DVI----HAERSQHQRDNCVKAF------REGSIWVLICTELMGRG 429
Query: 529 LDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLF 568
+D V+ VI D P ++HRIGRT RAG G ++ F
Sbjct: 430 IDFKGVNLVINYDFPPTTISYIHRIGRTGRAGRPGRAITF 469
>At1g12770_1 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 543
Score = 109 bits (272), Expect = 2e-23
Identities = 108/429 (25%), Positives = 187/429 (43%), Gaps = 49/429 (11%)
Query: 150 TFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPI 209
+F+ G+ D+++ L + S PT +Q +P ++ +D I + TGSGKTLA+LLPI
Sbjct: 111 SFEELGLPDSLLDSLE-REGFSVPTDVQSAAVPAIIKG-HDAVIQSYTGSGKTLAYLLPI 168
Query: 210 FQSILSLGQNIT-------RQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIG 262
I L + +++ A++V P+REL QI + +L H + L+G
Sbjct: 169 LSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVG 228
Query: 263 G-ERKKSEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGF 321
G R + E+A + ++GTPGR+ + + K+ R++VLDE D+L+ F
Sbjct: 229 GANRMRQEEALKKNKPAIVVGTPGRIAEISKGGKLHTH----GCRFLVLDEVDELLSFNF 284
Query: 322 EETLKEILNIIHGIDIDTHQFPKLPKRILH--VLCSATVKGNVTKLGNVTLQNYKLISSG 379
E + IL + G ++ +R +L SATV +V + L+ +
Sbjct: 285 REDIHRILEHV-GKRSGAGPKGEVDERANRQTILVSATVPFSVIRAAKSWSHEPVLVQAN 343
Query: 380 QKQTETTTVPDQLLQKIVIVPPKL--RLVTLAGSLTTITQKHY---KEGSKSDVTRTIVF 434
+ T P + + + ++ T SL + +Y K K D R V
Sbjct: 344 KVTPLDTVQPSAPVMSLTPTTSEADGQIQTTIQSLPPALKHYYCISKHQHKVDTLRRCVH 403
Query: 435 LSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLS 494
+ SV F +H + +V +L +G + ++HG L
Sbjct: 404 ALDAQSVI----AFMNHSRQLKDVV---YKLEARGMNSA--------------EMHGDLG 442
Query: 495 QQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIG 554
+ R+ LK F G+ +L ++++RGLD+ V+ ++ P + HR G
Sbjct: 443 KLGRSTVLKKFKN------GEIKVLVTNELSARGLDVAECDLVVNLELPTDAVHYAHRAG 496
Query: 555 RTARAGCEG 563
RT R G +G
Sbjct: 497 RTGRLGRKG 505
>Hs7661920 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 411
Score = 108 bits (270), Expect = 3e-23
Identities = 112/436 (25%), Positives = 190/436 (42%), Gaps = 81/436 (18%)
Query: 136 KAEVTYSNAPLVGDTFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHA 195
K E S V TFD+ G+ + ++ + KP+ IQ+ I ++ + D+ +
Sbjct: 25 KVEFETSEEVDVTPTFDTMGLREDLLRGIYA-YGFEKPSAIQQRAIKQIIKGR-DVIAQS 82
Query: 196 QTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQCCHFL 255
Q+G+GKT F + + Q L + T+ AL++ PTRELA QI + L +
Sbjct: 83 QSGTGKTATFSISVLQC-LDIQVRETQ-----ALILAPTRELAVQIQKGLLALGD--YMN 134
Query: 256 VPC-LLIGGERKKSEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGD 314
V C IGG + +L G + + GTPGRV D ++ + +++ +VLDE D
Sbjct: 135 VQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRR----RSLRTRAIKMLVLDEAD 190
Query: 315 KLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYK 374
+++ GF+E + ++ + LP VL SAT+ + ++ N + +
Sbjct: 191 EMLNKGFKEQIYDV-------------YRYLPPATQVVLISATLPHEILEMTNKFMTD-- 235
Query: 375 LISSGQKQTETTTVPDQLLQKIVIVP-PKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIV 433
I K+ E T + + Q V V + + TL T+T +T+ ++
Sbjct: 236 PIRILVKRDELTL--EGIKQFFVAVEREEWKFDTLCDLYDTLT-----------ITQAVI 282
Query: 434 FLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSL 493
F + VD+ E + N +HG +
Sbjct: 283 FCNTKRKVDWLTEKMR-------------------------------EANFTVSSMHGDM 311
Query: 494 SQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRI 553
Q+ R + +K F + G +L TDV +RGLD+P VS +I D P E ++HRI
Sbjct: 312 PQKERESIMKEFRS------GASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI 365
Query: 554 GRTARAGCEGESLLFL 569
GR+ R G +G ++ F+
Sbjct: 366 GRSGRYGRKGVAINFV 381
>CE27728 [A] KOG0346 RNA helicase
Length = 634
Score = 107 bits (268), Expect = 5e-23
Identities = 110/440 (25%), Positives = 197/440 (44%), Gaps = 62/440 (14%)
Query: 150 TFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPI 209
TF FG+ + ++ + ++ K ++Q+ VI L+ +N + A+TGSGKT AFL+P+
Sbjct: 90 TFADFGLDERILKSIG-ELGWEKANQVQESVISLALENKN-IMGRARTGSGKTGAFLIPL 147
Query: 210 FQSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSE 269
Q +++ + G A+++ PT+EL QIY++ +L+Q FL + + ++
Sbjct: 148 VQKLIAESKTNDGSVGPSAVIIAPTKELITQIYKLFVKLSQALPFL-QAINLCDINEEEN 206
Query: 270 KARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEIL 329
L ++ ++ TPG++L ++ + + Y+V+DE D L+ G+EE + +I
Sbjct: 207 SVWLEDRSHVVVTTPGKLLRMCS----LRPEYCTLVSYLVMDEADLLLSFGYEEEMIKIR 262
Query: 330 NIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLG---------NVTLQNYKLISSGQ 380
+ KLP ++ SAT+K ++T L + L L +S Q
Sbjct: 263 S-------------KLPPTYQCLMTSATLKDDMTTLKKLFMTGPVITIKLTEGDLPNSDQ 309
Query: 381 -KQTETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSD 439
Q + T D+ I++ KL+L+ V R+I+F++ D
Sbjct: 310 LTQYQLTCGSDEERFAILVAMFKLKLI---------------------VGRSILFVNTID 348
Query: 440 ---SVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQ 496
+ VF + + ++A ++ FN+ VI + + +
Sbjct: 349 RCYKLMLILRVFGL-----KSCILNSAMPANSRCHVINQFNEGSYQIVIASDVSDADGSK 403
Query: 497 TR--TATLKHFATNNDATKGKHLI-LFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRI 553
+ A D KGK L SRG+D HVS V+ D P + ++HR+
Sbjct: 404 LKEEIAGKSDEKPEKDEKKGKKASKLDKESGVSRGIDFHHVSNVVNFDFPETTDAYIHRV 463
Query: 554 GRTARAGCEGESLLFLLPGE 573
GRTAR +G +L F +P E
Sbjct: 464 GRTARGFNKGTALSFCIPSE 483
>CE06239 [A] KOG0344 ATP-dependent RNA helicase
Length = 581
Score = 107 bits (267), Expect = 7e-23
Identities = 116/439 (26%), Positives = 184/439 (41%), Gaps = 85/439 (19%)
Query: 151 FDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIF 210
F ++ ++++ L+ + I +P+ IQ IP F+ + ++ A TGSGKTLAF LP+
Sbjct: 128 FSDSSMSPSLLNRLS-ENSIRQPSPIQMQSIP-FMTERRNVLASAPTGSGKTLAFALPVI 185
Query: 211 QSILSLGQ----NITRQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERK 266
IL L Q + + S A+V+ PTRELA Q Y T L C + + GE
Sbjct: 186 DEILELKQRADYSSSNSSKLLAVVLEPTRELAAQTY--TEFLKYCANTSISAANFSGEET 243
Query: 267 KSEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMEL--GFEET 324
+ A+ ++ TP R++ HL SLR++V+DE D+L E+ G ++
Sbjct: 244 DIQH------ADILVSTPNRIVFHLDKID------TSSLRWLVVDESDRLFEVVEGQDKC 291
Query: 325 LKEILNIIH-GIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQT 383
+ L I+ D K SAT V K + ++ G++ +
Sbjct: 292 FRNQLAAIYKACD---------AKCTRVAFFSATFSHEVEKWCKENIDEIGMVCVGERNS 342
Query: 384 ETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDF 443
T+V +L T G+ E K R ++ S
Sbjct: 343 SNTSVKQKL--------------TYCGT----------EDGKKIAIRNLLRTSFKPPA-- 376
Query: 444 HYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLK 503
VF D A L K S + D N+ ++ S + R T++
Sbjct: 377 --LVFVQSK--------DRAVQLVKLLSAI-------DSNLKVDSINSGKSDKERDETME 419
Query: 504 HFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEG 563
F +G+ +L CT++ RGLDL V VI D P ++ ++HR+GRT RAG G
Sbjct: 420 RF------RRGEIWVLVCTELLGRGLDLSDVGLVINYDLPTSIVSYIHRVGRTGRAGKSG 473
Query: 564 ESLLFLLPGEEEGYMDYIK 582
++ + + M YIK
Sbjct: 474 HAVTYFTDAD----MKYIK 488
>Hs13775232 [A] KOG0331 ATP-dependent RNA helicase
Length = 580
Score = 107 bits (266), Expect = 9e-23
Identities = 105/393 (26%), Positives = 173/393 (43%), Gaps = 73/393 (18%)
Query: 160 MVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQN 219
+++H K PT IQ +IP L + D+ A TGSGKT AFLLP+ L +
Sbjct: 213 VLNHNLKKSGYEVPTPIQMQMIPVGLLGR-DILASADTGSGKTAAFLLPVIMRALFESKT 271
Query: 220 ITRQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANF 279
+ AL++TPTRELA QI + EL + LL+GG + RL++
Sbjct: 272 PS------ALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRLQQHVKV 325
Query: 280 IIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDT 339
II TPGR+LD ++ + V +L ++ VV+DE D ++++GF++ + +IL
Sbjct: 326 IIATPGRLLDIIKQSSV---ELC-GVKIVVVDEADTMLKMGFQQQVLDILE--------- 372
Query: 340 HQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIV 399
+P +L SAT+ ++ +L + L N I +G+K V Q++ +
Sbjct: 373 ----NIPNDCQTILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCANV-RQIILWVEDP 427
Query: 400 PPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLV 459
K +L + +K +K +VF+ C D L+
Sbjct: 428 AKKKKLFEILND-----KKLFK-------PPVLVFVDCKLGAD---------------LL 460
Query: 460 GDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLIL 519
+ + +T SI +H SQ R LK +G + ++
Sbjct: 461 SEAVQKITGLKSI---------------SIHSEKSQIERKNILK------GLLEGDYEVV 499
Query: 520 FCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHR 552
T V RGLDL V V+ D P ++++++H+
Sbjct: 500 VSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQ 532
>At3g19760 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 408
Score = 107 bits (266), Expect = 9e-23
Identities = 98/426 (23%), Positives = 182/426 (42%), Gaps = 89/426 (20%)
Query: 150 TFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPI 209
+F+ GI + ++ + + KP+ IQ+ + P LQ + D+ AQ+G+GKT L +
Sbjct: 36 SFNDMGIKEDVLRGV-YEYGFEKPSAIQQRAVMPILQGR-DVIAQAQSGTGKTSMIALSV 93
Query: 210 FQSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSE 269
Q + + + + AL+++PTRELA Q + + + IGG +
Sbjct: 94 CQVVDTSSREVQ------ALILSPTRELATQTEKTIQAIGLHANIQAHAC-IGGNSVGED 146
Query: 270 KARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEIL 329
+L G + + GTPGRV D ++ + +++ ++LDE D+++ GF++ + ++
Sbjct: 147 IRKLEHGVHVVSGTPGRVCDMIKR----RSLRTRAIKLLILDESDEMLSRGFKDQIYDV- 201
Query: 330 NIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVP 389
+ LP + L SAT+ + ++ + + TE
Sbjct: 202 ------------YRYLPPDLQVCLVSATLPHEILEM------------TSKFMTEPV--- 234
Query: 390 DQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSD------VTRTIVFLSCSDSVDF 443
KI++ +L L + + ++ +K + D +T+ ++F + VD+
Sbjct: 235 -----KILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDY 289
Query: 444 HYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLK 503
E SH N +HG + Q+ R A +
Sbjct: 290 LSEKMRSH-------------------------------NFTVSSMHGDMPQKERDAIMN 318
Query: 504 HFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEG 563
F + G +L TDV +RG+D+ VS VI D P E ++HRIGR+ R G +G
Sbjct: 319 EFRS------GDSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKG 372
Query: 564 ESLLFL 569
++ F+
Sbjct: 373 VAINFV 378
>YKR059w [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 395
Score = 106 bits (264), Expect = 1e-22
Identities = 112/420 (26%), Positives = 183/420 (42%), Gaps = 90/420 (21%)
Query: 172 KPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVV 231
+P+ IQ+ I P ++ +D+ AQ+G+GKT F SI +L + T AL++
Sbjct: 44 EPSAIQQRAIMPIIEG-HDVLAQAQSGTGKTGTF------SIAALQRIDTSVKAPQALML 96
Query: 232 TPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLDHL 291
PTRELA QI +V LA V IGG + LR A ++GTPGRV D++
Sbjct: 97 APTRELALQIQKVVMALAFHMDIKVHAC-IGGTSFVEDAEGLRD-AQIVVGTPGRVFDNI 154
Query: 292 QNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRILH 351
Q + ++ ++ +LDE D+++ GF+E + +I F LP
Sbjct: 155 QRRRFRTDK----IKMFILDEADEMLSSGFKEQIYQI-------------FTLLPPTTQV 197
Query: 352 VLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGS 411
VL SAT+ +V ++ ++N +I++ +L L +
Sbjct: 198 VLLSATMPNDVLEVTTKFMRN--------------------PVRILVKKDELTLEGIKQF 237
Query: 412 LTTITQKHYKEGSKSD------VTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARL 465
+ ++ YK +D VT+ ++F + V+ L
Sbjct: 238 YVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVE---------------------EL 276
Query: 466 LTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVA 525
TK ND + I + L QQ R +K F + G IL TD+
Sbjct: 277 TTK------LRNDKFTVSAI----YSDLPQQERDTIMKEFRS------GSSRILISTDLL 320
Query: 526 SRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEEEGYMDYIKPYH 585
+RG+D+ VS VI D P E+++HRIGR R G +G ++ F + E+ G M ++ ++
Sbjct: 321 ARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINF-VTNEDVGAMRELEKFY 379
>YJL138c [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 395
Score = 106 bits (264), Expect = 1e-22
Identities = 112/420 (26%), Positives = 183/420 (42%), Gaps = 90/420 (21%)
Query: 172 KPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVV 231
+P+ IQ+ I P ++ +D+ AQ+G+GKT F SI +L + T AL++
Sbjct: 44 EPSAIQQRAIMPIIEG-HDVLAQAQSGTGKTGTF------SIAALQRIDTSVKAPQALML 96
Query: 232 TPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLDHL 291
PTRELA QI +V LA V IGG + LR A ++GTPGRV D++
Sbjct: 97 APTRELALQIQKVVMALAFHMDIKVHAC-IGGTSFVEDAEGLRD-AQIVVGTPGRVFDNI 154
Query: 292 QNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRILH 351
Q + ++ ++ +LDE D+++ GF+E + +I F LP
Sbjct: 155 QRRRFRTDK----IKMFILDEADEMLSSGFKEQIYQI-------------FTLLPPTTQV 197
Query: 352 VLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGS 411
VL SAT+ +V ++ ++N +I++ +L L +
Sbjct: 198 VLLSATMPNDVLEVTTKFMRN--------------------PVRILVKKDELTLEGIKQF 237
Query: 412 LTTITQKHYKEGSKSD------VTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARL 465
+ ++ YK +D VT+ ++F + V+ L
Sbjct: 238 YVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVE---------------------EL 276
Query: 466 LTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVA 525
TK ND + I + L QQ R +K F + G IL TD+
Sbjct: 277 TTK------LRNDKFTVSAI----YSDLPQQERDTIMKEFRS------GSSRILISTDLL 320
Query: 526 SRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEEEGYMDYIKPYH 585
+RG+D+ VS VI D P E+++HRIGR R G +G ++ F + E+ G M ++ ++
Sbjct: 321 ARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINF-VTNEDVGAMRELEKFY 379
>Hs8922976 [A] KOG0330 ATP-dependent RNA helicase
Length = 540
Score = 106 bits (264), Expect = 1e-22
Identities = 129/474 (27%), Positives = 201/474 (42%), Gaps = 63/474 (13%)
Query: 97 VEQPARVTQPLQLNSQIVSSLFTSSR-NIDTVTNSNAHDEKAEVTYSNAPLVGDTFDSFG 155
+ QPAR+T + + S + S R D + A E V ++ +F G
Sbjct: 76 LNQPARLTLGRWERAPLASQGWKSRRARRDHFSIERAQQEAPAVRKLSSK---GSFADLG 132
Query: 156 ITDTMVSHLN-VKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSIL 214
+ ++ L ++ +PT +Q IP L+ ++ + A+TGSGKTL++LLP+ Q +
Sbjct: 133 LEPRVLHALQEAAPEVVQPTTVQSSTIPSLLRGRH-VVCAAETGSGKTLSYLLPLLQRL- 190
Query: 215 SLGQNITRQSGCFA---LVVTPTRELANQIYQVTSELAQCCHFLVPCLLIG-GERKKSEK 270
LGQ A LV+ P+RELA Q+ V L + LV L G G R+ +
Sbjct: 191 -LGQPSLDSLPIPAPRGLVLVPSRELAQQVRAVAQPLGRSLGLLVRDLEGGHGMRRIRLQ 249
Query: 271 ARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILN 330
+ A+ ++ TPG + L++ + EQL+ ++VLDE D L++ F E + IL
Sbjct: 250 LSRQPSADVLVATPGALWKALKSRLISLEQLS----FLVLDEADTLLDESFLELVDYILE 305
Query: 331 IIHGIDIDTH-QFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVP 389
H + + P PK L VL AT V +L N K+ S T T++
Sbjct: 306 KSHIAEGPADLEDPFNPKAQL-VLVGATFPEGVGQLLN------KVASPDAVTTITSSKL 358
Query: 390 DQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTI-VFLSCSDSVDFHYEVF 448
++ + +L+ L I KH ++ + T+ VF + S +V++ +
Sbjct: 359 HCIMPHVKQTFLRLKGADKVAELVHIL-KHRDRAERTGPSGTVLVFCNSSSTVNWLGYIL 417
Query: 449 SSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATN 508
H H L G L+ G I F
Sbjct: 418 DDHKIQHLRLQGQMPALMRVG--IFQSFQ------------------------------- 444
Query: 509 NDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCE 562
K IL CTD+ASRGLD V V+ D P ++D++HR GR R G E
Sbjct: 445 ----KSSRDILLCTDIASRGLDSTGVELVVNYDFPPTLQDYIHRAGRVGRVGSE 494
>7299019 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 105 bits (263), Expect = 2e-22
Identities = 111/449 (24%), Positives = 196/449 (42%), Gaps = 92/449 (20%)
Query: 129 NSNAHD-EKAEVTYSNAPLVGDTFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQA 187
N+ A D E S V TF++ + + ++ + KP+ IQ+ I P ++
Sbjct: 5 NAQAEDLSNVEFETSEDVEVIPTFNAMNLKEELLRGIYA-YGFEKPSAIQQRSITPIVKG 63
Query: 188 QNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSE 247
+ D+ AQ+G+GKT F + I QS+ R++ L ++PTRELA QI +V
Sbjct: 64 R-DVIAQAQSGTGKTATFSISILQSL----DTTLRETQ--VLCLSPTRELAVQIQKVILA 116
Query: 248 LAQCCHFLVPC-LLIGGERKKSEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLR 306
L + V C + IGG + +L G + + GTPGRV D ++ +V++ + +++
Sbjct: 117 LGDMMN--VQCHVCIGGTNLGEDIRKLDYGQHIVSGTPGRVFDMIKR-RVLRTR---AIK 170
Query: 307 YVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLG 366
+VLDE D+++ GF+E + ++ + LP VL SAT+ + ++
Sbjct: 171 MLVLDEADEMLNKGFKEQIYDV-------------YRYLPPATQVVLISATLPHEILEM- 216
Query: 367 NVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKS 426
++ T P ++L K +L L + + ++ +K +
Sbjct: 217 ---------------TSKFMTDPIRILVK----RDELTLEGIKQFFVAVEREEWKFDTLC 257
Query: 427 D------VTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTD 480
D +T+ ++F + VD+ E
Sbjct: 258 DLYDTLTITQAVIFCNTKRKVDWLTEKMR------------------------------- 286
Query: 481 DPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEM 540
+ N +HG + Q+ R +K F G+ +L TDV +RG+D+ VS VI
Sbjct: 287 EANFTVSSMHGDMPQKERDEIMKEFRA------GQSRVLITTDVWARGIDVQQVSLVINY 340
Query: 541 DPPFAVEDHLHRIGRTARAGCEGESLLFL 569
D P E ++HRIGR+ R G +G ++ F+
Sbjct: 341 DLPNNRELYIHRIGRSGRFGRKGVAINFV 369
>At3g06980 [A] KOG0331 ATP-dependent RNA helicase
Length = 781
Score = 105 bits (261), Expect = 3e-22
Identities = 116/453 (25%), Positives = 202/453 (43%), Gaps = 74/453 (16%)
Query: 150 TFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPI 209
TF G ++ M+ L + +P IQ + P + ++ + I Q+GSGKTLA+L+P+
Sbjct: 375 TFAEIGCSEDMMKALK-EQNFDRPAHIQAMAFSPVIDGKSCI-IADQSGSGKTLAYLVPV 432
Query: 210 FQSIL--SLGQNITRQSGC-FALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERK 266
Q + L + GC +V+ PT ELA+Q+ +++ ++ GG R+
Sbjct: 433 IQRLREEELQGHSKSSPGCPRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQ 492
Query: 267 KSEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLK 326
+++ L +G + +I TPGR +L N ++ +LR +LDE D L G +E
Sbjct: 493 RTQLENLEQGVDVLIATPGR-FTYLMNEGILG---LSNLRCAILDEVDIL--FGDDEFEA 546
Query: 327 EILNIIHGIDIDTHQF----PKLPKRILHVL------CSATVKGNVTKLGNVTLQNYKLI 376
+ N+I+ + T Q+ LP I + L C + V ++ N L+ + +
Sbjct: 547 ALQNLINSSPV-TAQYLFVTATLPLEIYNKLVEVFPDCEVVMGPRVHRVSN-ALEEFLVD 604
Query: 377 SSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLS 436
SG E T P+ Q K L+ + ++ V++TI+F +
Sbjct: 605 CSGDDNAEKT--PETAFQN-----KKTALLQIM--------------EENPVSKTIIFCN 643
Query: 437 CSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQ 496
++ +F D R L +LP H +LSQ+
Sbjct: 644 KIETCRKVENIFKRVDRKERQL------------HVLP--------------FHAALSQE 677
Query: 497 TRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRT 556
+R ++ F ++ + L L CTD ASRG+D V V+ D P +++ R+GRT
Sbjct: 678 SRLTNMQEFTSSQ--PEENSLFLVCTDRASRGIDFSGVDHVVLFDFPRDPSEYVRRVGRT 735
Query: 557 AR-AGCEGESLLFLLPGEEEGYMDYIKPYHPKG 588
AR A +G++ +F++ G++ G I + KG
Sbjct: 736 ARGARGKGKAFIFVV-GKQVGLARRIIERNEKG 767
>Hs15316941 [A] KOG0344 ATP-dependent RNA helicase
Length = 491
Score = 104 bits (259), Expect = 6e-22
Identities = 111/402 (27%), Positives = 180/402 (44%), Gaps = 80/402 (19%)
Query: 173 PTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVT 232
PT IQ IP L + +L A TGSGKTLAF +PI ++ L Q + G AL+++
Sbjct: 80 PTPIQMQAIPVMLHGR-ELLASAPTGSGKTLAFSIPI---LMQLKQPANK--GFRALIIS 133
Query: 233 PTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLDHLQ 292
PTRELA+QI++ ++++ F + + K + K + ++ TP R++ +L
Sbjct: 134 PTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLI-YLL 192
Query: 293 NTKVIKEQLAPSLRYVVLDEGDKLME---LGFEETLKEILNIIHGIDIDTHQFPKLPKRI 349
LA S+ ++V+DE DKL E GF + L I + +H ++
Sbjct: 193 KQDPPGIDLA-SVEWLVVDESDKLFEDGKTGFRDQLASIF-----LACTSH-------KV 239
Query: 350 LHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLA 409
+ SAT +V + + L N +S G + + TV +LL
Sbjct: 240 RRAMFSATFAYDVEQWCKLNLDNVISVSIGARNSAVETVEQELL--------------FV 285
Query: 410 GSLT---TITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLL 466
GS T ++ K+G V +VF+ S++ E+F H+ + G+ D
Sbjct: 286 GSETGKLLAMRELVKKGFNPPV---LVFV---QSIERAKELF--HELIYEGINVDV---- 333
Query: 467 TKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVAS 526
+H +QQ R T+ F GK +L CT + +
Sbjct: 334 ----------------------IHAERTQQQRDNTVHSFRA------GKIWVLICTALLA 365
Query: 527 RGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLF 568
RG+D V+ VI D P + +++HRIGRT RAG +G+++ F
Sbjct: 366 RGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITF 407
>Hs4758140 [A] KOG0326 ATP-dependent RNA helicase
Length = 472
Score = 103 bits (257), Expect = 1e-21
Identities = 110/418 (26%), Positives = 182/418 (43%), Gaps = 88/418 (21%)
Query: 148 GDTFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLL 207
G+ F+ + + ++ + +M KP+ IQ+ IP L + D+ A+ G+GK+ A+L+
Sbjct: 84 GNEFEDYCLKRELLMGI-FEMGWEKPSPIQEESIPIALSGR-DILARAKNGTGKSGAYLI 141
Query: 208 PIFQSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKK 267
P+ + + NI A+V+ PTRELA Q+ Q+ ++++ GG +
Sbjct: 142 PLLERLDLKKDNIQ------AMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLR 195
Query: 268 SEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLA--PSLRYVVLDEGDKLMELGFEETL 325
+ RL + +I TPGR+LD +IK+ +A ++ +VLDE DKL+ F + +
Sbjct: 196 DDIMRLDDTVHVVIATPGRILD------LIKKGVAKVDHVQMIVLDEADKLLSQDFVQIM 249
Query: 326 KEILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTET 385
++I+ LPK +L SAT +V K N LQ I+ ++ T
Sbjct: 250 EDII-------------LTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELT-- 294
Query: 386 TTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEG---SKSDVTRTIVFLSCSDSVD 442
L+ VT + T QK + S+ + ++I+F + S V+
Sbjct: 295 -----------------LKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVE 337
Query: 443 FHYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATL 502
LL K S L C+ +H + Q+ R
Sbjct: 338 ----------------------LLAKKISQL---------GYSCFYIHAKMRQEHRNRVF 366
Query: 503 KHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAG 560
+D G L CTD+ +RG+D+ V+ VI D P E +LHRIGR+ R G
Sbjct: 367 ------HDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFG 418
>At4g15850 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 474
Score = 103 bits (257), Expect = 1e-21
Identities = 113/404 (27%), Positives = 169/404 (40%), Gaps = 55/404 (13%)
Query: 188 QNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSE 247
+ D+ +++ TGSGKTL++ LPI Q + S R ALVV PTR+LA Q+ V
Sbjct: 24 ERDICVNSPTGSGKTLSYALPIVQLLASRPVRCLR-----ALVVLPTRDLALQVKDVFDA 78
Query: 248 LAQCCHFLVPCLL----IGGERKKSEKA----------------RLRKGANFIIGTPGRV 287
+A V + I GE + K L + ++ TPGR+
Sbjct: 79 IAPAVGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQNLESAVDILVATPGRL 138
Query: 288 LDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPK 347
+DH+ NTK + LRY+V+DE D+L+ ++ L +L + D FP
Sbjct: 139 MDHINNTKGFTLE---HLRYLVVDETDRLLREAYQSWLPTVLQLTQ--TSDDSLFPSFTP 193
Query: 348 RILHVLCS-ATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLV 406
+ S TV+ + G +L+ T T P +L+Q + P +
Sbjct: 194 FVPSAFGSLQTVRRQSVERGFKGKPYPRLVKMVLSAT-LTQDPSKLIQLDLHHP---LFM 249
Query: 407 TLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLL 466
T GS Y+ K + R I C + Y V + T+ +
Sbjct: 250 TTGGS-------RYRLPEKLECLRLI----CETGMKPVYLVALLKSWEGEKCIIFTSSVE 298
Query: 467 TKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVAS 526
T + N DP + + G L+Q R+ LK F KG +L +D +
Sbjct: 299 TT-RRLCKLLNFFGDPKIKAKEYSGGLNQSLRSKELKAF------RKGDIQVLVASDALT 351
Query: 527 RGLDLPHVSTVIEMD-PPFAVEDHLHRIGRTARAGCEGESLLFL 569
RG+D+ V+ VI D PPFA + +HR GRTARAG G L
Sbjct: 352 RGMDVKGVTNVINYDMPPFA-KTFIHRAGRTARAGQAGRCFTLL 394
>At3g61240 [A] KOG0326 ATP-dependent RNA helicase
Length = 498
Score = 102 bits (254), Expect = 2e-21
Identities = 111/461 (24%), Positives = 195/461 (42%), Gaps = 89/461 (19%)
Query: 110 NSQIVSSLFTSSRNIDTVTNSNAHDEKA-------EVTYSNAPLV---GDTFDSFGITDT 159
N+ + + + + +++N D KA + Y A + G+ F+ + +
Sbjct: 75 NASNANEVVQQTTQPEASSDANGQDWKATLRLPPPDTRYQTADVTATKGNEFEDYFLKRD 134
Query: 160 MVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQN 219
++ + K KP+ IQ+ IP L +D+ A+ G+GKT AF +P+ + I N
Sbjct: 135 LLKGIYEK-GFEKPSPIQEESIPIALTG-SDILARAKNGTGKTGAFCIPVLEKI-DPNNN 191
Query: 220 ITRQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANF 279
+ + A+++ PTRELA Q QV EL++ + V + GG + + RL + +
Sbjct: 192 VIQ-----AMILVPTRELALQTSQVCKELSKYLNIQV-MVTTGGTSLRDDIMRLHQPVHL 245
Query: 280 IIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDT 339
++GTPGR+LD + + + A +V+DE DKL+ F+ +L+E++
Sbjct: 246 LVGTPGRILDLTKKGVCVLKDCA----MLVMDEADKLLSAEFQPSLEELIQF-------- 293
Query: 340 HQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIV 399
LP+ ++ SAT VT++ +K D+ L+K ++
Sbjct: 294 -----LPQNRQFLMFSATFP--------VTVKAFK---------------DRHLRKPYVI 325
Query: 400 PPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLV 459
L LT + VT+ F+ V +FS N +
Sbjct: 326 -------NLMDQLTLM-----------GVTQYYAFVEERQKVHCLNTLFSKLQINQSIIF 367
Query: 460 GDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLIL 519
++ N + + C+ +H + Q R F N A + L
Sbjct: 368 CNSV------NRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEF--RNGACRN----L 415
Query: 520 FCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAG 560
CTD+ +RG+D+ V+ VI D P E +LHR+GR+ R G
Sbjct: 416 VCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFG 456
>YGL171w [A] KOG0344 ATP-dependent RNA helicase
Length = 564
Score = 102 bits (253), Expect = 3e-21
Identities = 107/428 (25%), Positives = 184/428 (42%), Gaps = 82/428 (19%)
Query: 149 DTFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLP 208
D F ++++L ++ ++PT IQ IP L D+ TGSGKTLAFL+P
Sbjct: 122 DLISRFSFDKRLLNNL-IENGFTEPTPIQCECIPVALN-NRDVLACGPTGSGKTLAFLIP 179
Query: 209 IFQSILSLGQNITRQSGCFALVVTPTRELANQI--------YQVTSELAQCCHFLVPCLL 260
+ Q I+ Q +G L+++PT+ELANQI Y++ E + +
Sbjct: 180 LVQQIIDDKQT----AGLKGLIISPTKELANQIFIECFKLSYKIFLEKKRPLQVALLSKS 235
Query: 261 IGGERKKSEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELG 320
+G + K K K + II TP R++D ++N + + +++++ DE DKL +
Sbjct: 236 LGAKLK--NKVVSDKKYDIIISTPLRLIDVVKNEALDLSK----VKHLIFDEADKLFDKT 289
Query: 321 FEETLKEILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQ 380
F E +IL+ + P L K + SAT+ NV ++ + + + G
Sbjct: 290 FVEQSDDILSAC--------REPSLRK----AMFSATIPSNVEEIAQSIMMDPVRVIIGH 337
Query: 381 KQTETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDS 440
K+ T + QK++ + G L I Q + K + I+FL
Sbjct: 338 KEAANTNIE----QKLIFCGNE------EGKLIAIRQLVQEGEFKPPI---IIFLES--- 381
Query: 441 VDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTA 500
+T+ ++ +++ + +H + R
Sbjct: 382 -------------------------ITRAKAL---YHELMYDRINVDVIHAERTALQRDR 413
Query: 501 TLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAG 560
++ F T G+ L CTDV +RG+D V+ VI D P + + ++HRIGRT R G
Sbjct: 414 IIERFKT------GELWCLICTDVLARGIDFKGVNLVINYDVPGSSQAYVHRIGRTGRGG 467
Query: 561 CEGESLLF 568
G+++ F
Sbjct: 468 RSGKAITF 475
>ECU09g1640 [A] KOG0326 ATP-dependent RNA helicase
Length = 489
Score = 102 bits (253), Expect = 3e-21
Identities = 97/409 (23%), Positives = 183/409 (44%), Gaps = 82/409 (20%)
Query: 173 PTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVT 232
P+ +Q IP L +N L + ++ G+GKT ++++P+ I S +I +++
Sbjct: 131 PSPVQVASIPHVLGGKN-LLVRSKNGTGKTASYIVPMLNMINSSELSIQ------GIILV 183
Query: 233 PTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLDHLQ 292
P RELA QI + +++ ++ ++GG + + R+ G + ++GTPGR++D
Sbjct: 184 PIRELALQISRNVKRMSEGTG-VISAPVVGGTSMQDDIIRVSNGVHVMVGTPGRIVD--- 239
Query: 293 NTKVIKEQLAPSLRYVVL--DEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRIL 350
++++++ + V+L DE DKL+++ F ET+ ++L++ LP+
Sbjct: 240 ---LVEKRVGTLSKRVILVFDEADKLLDVTFGETVTKLLDL-------------LPREKQ 283
Query: 351 HVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAG 410
+L SAT VT ++N I+ ++ P + Q V P +L+ L
Sbjct: 284 MLLYSATFPYFVTGFIRRYMKNPLCINLMKE-----LAPVGVKQFYTYVKPSEKLLCLKS 338
Query: 411 SLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGN 470
L ++ + + ++F + +V+ A +T
Sbjct: 339 LLLRLS-----------INQCVIFCNSIKTVEL------------------LAMKIT--- 366
Query: 471 SILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLD 530
+ + Y +H ++Q+ R +F KGK IL TD+ +RG+D
Sbjct: 367 ----------EMGLPSYFIHSKMAQEDRNIVFHNF------LKGKCKILVATDLITRGVD 410
Query: 531 LPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEEEGYMD 579
P+ + VI D + E +LHRIGR R G G ++ + E+E MD
Sbjct: 411 APNTNYVINFDISKSPESYLHRIGRAGRFGAPGVAISLVTTEEKEMLMD 459
>SPCC63.11 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 662
Score = 100 bits (248), Expect = 1e-20
Identities = 80/296 (27%), Positives = 146/296 (49%), Gaps = 39/296 (13%)
Query: 151 FDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIF 210
++ G+ M+ L K+ +P+ IQ+ IP LQ + DL A+TGSGKT AF++P+
Sbjct: 251 WEEAGLPSEMLKVLK-KVNYKEPSSIQRAAIPVLLQ-RKDLIGIAETGSGKTAAFIIPLI 308
Query: 211 QSILSLG--QNITRQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCL-LIGGERKK 267
+I L G +A+V+ PTRELA QI ++ A+ F C+ ++GG +
Sbjct: 309 IAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGF--RCVSVVGGHAFE 366
Query: 268 SEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKE 327
+ ++ +GA+ ++ TPGR+LD L+ + Q YVV+DE D+++++GFE+ + +
Sbjct: 367 EQSFQMSQGAHIVVATPGRLLDCLERRLFVLSQCT----YVVMDEADRMLDMGFEDDVNK 422
Query: 328 ILNIIHGIDI------------------DTHQF-PKLPKRILHVLCSATVKGNVTKLGNV 368
IL+ + + T F LP R+ ++ S ++ + +GN+
Sbjct: 423 ILSSLPSSNASEKDGSILATANSSSSRRQTIMFSATLPPRVANLAKSYLIEPVMLTIGNI 482
Query: 369 ------TLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQK 418
Q ++IS K+ +++L+ PP + V L ++ I ++
Sbjct: 483 GQAVDRVEQRVEMISDDSKKWRRV---EEILESNRFSPPIIIFVNLKRNIEAIAKQ 535
Score = 68.9 bits (167), Expect = 3e-11
Identities = 38/91 (41%), Positives = 54/91 (58%), Gaps = 6/91 (6%)
Query: 489 LHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVED 548
LHGS SQ+ R ++ N A IL TD+A RG+D+P+VS V+ + ++ED
Sbjct: 546 LHGSKSQEQRERAIEQLR-NKTAD-----ILVATDIAGRGIDIPNVSLVLNYNMAKSIED 599
Query: 549 HLHRIGRTARAGCEGESLLFLLPGEEEGYMD 579
+ HRIGRT RAG G ++ FL P + + Y D
Sbjct: 600 YTHRIGRTGRAGKSGTAITFLGPEDTDVYYD 630
>Hs9506609 [A] KOG0340 ATP-dependent RNA helicase
Length = 257
Score = 99.4 bits (246), Expect = 2e-20
Identities = 85/272 (31%), Positives = 138/272 (50%), Gaps = 32/272 (11%)
Query: 151 FDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIF 210
F G++ +V ++ + KPT +Q IP L+ ++ L A+TGSGKT AF+LPI
Sbjct: 4 FAELGLSSWLVEQCR-QLGLKKPTPVQLGCIPAILEGRDCLGC-AKTGSGKTAAFVLPIL 61
Query: 211 QSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEK 270
Q + G F LV+TPTRELA QI + L + L C+++GG ++
Sbjct: 62 QKLSE------DPYGIFCLVLTPTRELAYQIAERFRVLGKPLG-LKDCIIVGGMDMVAQA 114
Query: 271 ARLRKGANFIIGTPGRVLDHLQ--NTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEI 328
L + + +I TPGR+ DHL+ NT IK+ +R++V+DE D+L+E G + ++
Sbjct: 115 LELSRKPHVVIATPGRLADHLRSSNTFSIKK-----IRFLVMDEADRLLEQGCTDFTVDL 169
Query: 329 LNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKL-GNVTLQNYKLISSGQKQTETTT 387
I+ + P R +L SAT+ + +L G T Q + + Q +T
Sbjct: 170 EAILAAV----------PARRQTLLFSATLTDTLRELQGLATNQPF----FWEAQAPVST 215
Query: 388 VPDQLLQKIVIVPPKLRLVTLAGSLTTITQKH 419
V +QL Q+ ++VP K++ L + +H
Sbjct: 216 V-EQLDQRYLLVPEKVKDAYLVHLIQRFQDEH 246
>7297629 [A] KOG0326 ATP-dependent RNA helicase
Length = 458
Score = 99.4 bits (246), Expect = 2e-20
Identities = 108/389 (27%), Positives = 167/389 (42%), Gaps = 78/389 (20%)
Query: 172 KPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVV 231
+P+ IQ+ IP L + D+ A+ G+GKT A+ +P+ + I I ALV+
Sbjct: 79 RPSPIQEAAIPIALSGK-DVLARAKNGTGKTGAYCIPVLEQIDPTKDYIQ------ALVM 131
Query: 232 TPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLDHL 291
PTRELA Q Q+ ELA+ V + GG K + R+ + II TPGR+LD L
Sbjct: 132 VPTRELALQTSQICIELAKHLDIRV-MVTTGGTILKDDILRIYQKVQLIIATPGRILD-L 189
Query: 292 QNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRILH 351
+ KV R +VLDE DKL+ L F+ L H KLPK
Sbjct: 190 MDKKVAD---MSHCRILVLDEADKLLSLDFQGML-------------DHVILKLPKDPQI 233
Query: 352 VLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGS 411
+L SAT +T++N+ + ++ E + + L+ + ++
Sbjct: 234 LLFSATFP--------LTVKNF-MEKHLREPYEINLMEELTLKGVTQYYAFVQERQKVHC 284
Query: 412 LTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNS 471
L T+ SK + ++I+F + + V+ LL K +
Sbjct: 285 LNTLF-------SKLQINQSIIFCNSTQRVE----------------------LLAKKIT 315
Query: 472 ILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDL 531
L CY +H ++Q R +D +G L C+D+ +RG+D+
Sbjct: 316 EL---------GYCCYYIHAKMAQAHRNRVF------HDFRQGLCRNLVCSDLFTRGIDV 360
Query: 532 PHVSTVIEMDPPFAVEDHLHRIGRTARAG 560
V+ VI D P E +LHRIGR+ R G
Sbjct: 361 QAVNVVINFDFPRMAETYLHRIGRSGRFG 389
>CE11402 [A] KOG0334 RNA helicase
Length = 995
Score = 98.2 bits (243), Expect = 4e-20
Identities = 114/484 (23%), Positives = 198/484 (40%), Gaps = 69/484 (14%)
Query: 88 RSRFDNSSNVEQPARVTQPLQLNSQIVSSLFTSSRNIDTVTNSNAHDEKA-EVTYSNAPL 146
RS NS V P R + ++ + L + D + + + ++A E+ + +
Sbjct: 321 RSDGSNSEGVNAPVRAPRDWVPVTRDIDELVRETA--DRLADCDVGQDRAVEIRNAEKDV 378
Query: 147 VGDTFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFL 206
++ + G+ T++ L ++K + IQ +IP L +D+ A+T +GKT AF
Sbjct: 379 RLTSWTNSGLHPTILETLK-RIKYNNVRTIQGAMIPQVLDG-HDVLGQAETSAGKTAAFG 436
Query: 207 LPIFQSILSLGQ---NITRQ-SGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIG 262
LPI IL + + N RQ G AL++ PTRELA QI++ Q +V L G
Sbjct: 437 LPIIDKILRMDEETRNKARQDDGPLALILAPTRELAAQIHEALRTYCQNTDIIV-LLSYG 495
Query: 263 GERKKSEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLA-PSLRYVVLDEGDKLMELGF 321
+ +R G + +IGT GR++D +K ++ LR++V DE D+L++
Sbjct: 496 QSDRARSLNEIRNGCDILIGTCGRIMDF-----TVKSHISLLHLRFLVFDEADRLLQDMK 550
Query: 322 EETLKEILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQK 381
++ L + G I F + ++ SAT +V
Sbjct: 551 KDPLGHL-----GAIIKDAGFMESAATRQTIMTSATFNASV------------------- 586
Query: 382 QTETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSV 441
TV ++L++++ +++V G L+ + F C
Sbjct: 587 ----MTVANELMKRLPGQDEMIKIVLANGRLSKRV--------------NLEFFECKGLA 628
Query: 442 DFHYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTAT 501
+ + ++ N G T + K + C ++ LHG SQ R
Sbjct: 629 EKNAKLREILKQNVNGKTLKTIIFVQKKDQCDACAAKLTSGGMLAQTLHGDRSQDMREKL 688
Query: 502 LKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEM-----DPPFAVEDHLHRIGRT 556
+ F +N + +L TD+ SRG+D+ + VI DP + +HR GRT
Sbjct: 689 INDFKSN------RVNLLVTTDLLSRGIDVSDLDRVINFDLPDGDPDQGADTFIHRAGRT 742
Query: 557 ARAG 560
R G
Sbjct: 743 GRTG 746
>At2g45810 [A] KOG0326 ATP-dependent RNA helicase
Length = 528
Score = 98.2 bits (243), Expect = 4e-20
Identities = 110/446 (24%), Positives = 189/446 (41%), Gaps = 89/446 (19%)
Query: 125 DTVTNSNAHDEKAEV----------TYSNAPLVGDTFDSFGITDTMVSHLNVKMKISKPT 174
+ +++SN D KA + T G+ F+ + + ++ + K KP+
Sbjct: 120 EAISDSNNEDWKATLKLPPRDNRYQTEDVTATKGNEFEDYFLKRDLLRGIYEK-GFEKPS 178
Query: 175 KIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVTPT 234
IQ+ IP L +D+ A+ G+GKT AF +P + I N+ + A+++ PT
Sbjct: 179 PIQEESIPIALTG-SDILARAKNGTGKTGAFCIPTLEKI-DPENNVIQ-----AVILVPT 231
Query: 235 RELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLDHLQNT 294
RELA Q QV EL++ V + GG + + RL + + ++GTPGR+LD +
Sbjct: 232 RELALQTSQVCKELSKYLKIEV-MVTTGGTSLRDDIMRLYQPVHLLVGTPGRILDLAKKG 290
Query: 295 KVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRILHVLC 354
+ + A +V+DE DKL+ + F+ +++E++ LP+ ++
Sbjct: 291 VCVLKDCA----MLVMDEADKLLSVEFQPSIEELIQF-------------LPESRQILMF 333
Query: 355 SATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSLTT 414
SAT VT++++K D+ L+K I + L LT
Sbjct: 334 SATFP--------VTVKSFK---------------DRYLKKPYI-------INLMDQLTL 363
Query: 415 ITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILP 474
+ VT+ F+ V +FS N + ++ N +
Sbjct: 364 M-----------GVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSV------NRVEL 406
Query: 475 CFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHV 534
+ C+ +H + Q R F N A + L CTD+ +RG+D+ V
Sbjct: 407 LAKKITELGYSCFYIHAKMVQDHRNRVFHDF--RNGACRN----LVCTDLFTRGIDIQAV 460
Query: 535 STVIEMDPPFAVEDHLHRIGRTARAG 560
+ VI D P E +LHR+GR+ R G
Sbjct: 461 NVVINFDFPRTSESYLHRVGRSGRFG 486
>CE25531 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 508
Score = 97.8 bits (242), Expect = 5e-20
Identities = 105/418 (25%), Positives = 178/418 (42%), Gaps = 93/418 (22%)
Query: 129 NSNAHDEKAEVTYSNAPLVG--DTFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQ 186
N +D+ A V + ++ V TFD G+ + ++ + KP+ IQ+ IP L+
Sbjct: 4 NKKKNDDMATVEFESSEEVSIIPTFDKMGLREDLLRGIYA-YGFEKPSAIQQRAIPAILK 62
Query: 187 AQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVTPTRELANQIYQVTS 246
A+ D+ AQ+G+GKT F + + QS+ T+ AL+++PTRELA QI +V
Sbjct: 63 AR-DVIAQAQSGTGKTATFSISVLQSL------DTQVRETQALILSPTRELAVQIQKVVL 115
Query: 247 ELAQCCHFLVPC-LLIGGERKKSEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSL 305
L + V C IGG + +L G + + GTPGRV D ++ + ++
Sbjct: 116 ALGD--YMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRR----RNLRTRAI 169
Query: 306 RYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKL 365
+ +VLDE D+++ GF+E L +I + LP VL SAT+ + ++
Sbjct: 170 KLLVLDEADEMLNKGFKEQLYDI-------------YRYLPPGAQVVLLSATLPHEILEM 216
Query: 366 GNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSK 425
++ T P ++L K +L L + + ++ +K +
Sbjct: 217 ----------------TSKFMTDPIRILVK----RDELTLEGIKQFFVAVDREEWKFDTL 256
Query: 426 SD------VTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDT 479
D +T+ ++F + VD+ LT +
Sbjct: 257 IDLYDTLTITQAVLFCNTRRKVDW----------------------LT---------DKM 285
Query: 480 DDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTV 537
+ N +HG + Q+ R +K F G +L TDV +RGLD+P VS V
Sbjct: 286 KEANFTVSSMHGDMEQKDRDEVMKEFRA------GTTRVLISTDVWARGLDVPQVSLV 337
>Hs4759278 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 820
Score = 97.4 bits (241), Expect = 7e-20
Identities = 63/167 (37%), Positives = 97/167 (57%), Gaps = 11/167 (6%)
Query: 167 KMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITR---- 222
K +PT IQ+ IP LQ D+ A+TGSGKT AFL+P+ I +L + I R
Sbjct: 408 KCGYKEPTPIQRQAIPIGLQ-NRDIIGVAETGSGKTAAFLIPLLVWITTLPK-IDRIEES 465
Query: 223 QSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIG 282
G +A+++ PTRELA QI + T + + + IGG ++ + RLR G +I
Sbjct: 466 DQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAV-IGGISREDQGFRLRMGCEIVIA 524
Query: 283 TPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEIL 329
TPGR++D L+N ++ + YVVLDE D+++++GFE +++IL
Sbjct: 525 TPGRLIDVLENRYLVLSRCT----YVVLDEADRMIDMGFEPDVQKIL 567
Score = 61.2 bits (147), Expect = 5e-09
Identities = 36/81 (44%), Positives = 46/81 (56%), Gaps = 6/81 (7%)
Query: 489 LHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVED 548
LHG Q+ R FA +N K IL TDVA RG+D+ VS V+ D +ED
Sbjct: 694 LHGGKGQEQR-----EFALSNLKAGAKD-ILVATDVAGRGIDIQDVSMVVNYDMAKNIED 747
Query: 549 HLHRIGRTARAGCEGESLLFL 569
++HRIGRT RAG G ++ FL
Sbjct: 748 YIHRIGRTGRAGKSGVAITFL 768
>Hs17474597 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 820
Score = 97.4 bits (241), Expect = 7e-20
Identities = 63/167 (37%), Positives = 97/167 (57%), Gaps = 11/167 (6%)
Query: 167 KMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITR---- 222
K +PT IQ+ IP LQ D+ A+TGSGKT AFL+P+ I +L + I R
Sbjct: 408 KCGYKEPTPIQRQAIPIGLQ-NRDIIGVAETGSGKTAAFLIPLLVWITTLPK-IDRIEES 465
Query: 223 QSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIG 282
G +A+++ PTRELA QI + T + + + IGG ++ + RLR G +I
Sbjct: 466 DQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAV-IGGISREDQGFRLRMGCEIVIA 524
Query: 283 TPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEIL 329
TPGR++D L+N ++ + YVVLDE D+++++GFE +++IL
Sbjct: 525 TPGRLIDVLENRYLVLSRCT----YVVLDEADRMIDMGFEPDVQKIL 567
Score = 61.2 bits (147), Expect = 5e-09
Identities = 36/81 (44%), Positives = 46/81 (56%), Gaps = 6/81 (7%)
Query: 489 LHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVED 548
LHG Q+ R FA +N K IL TDVA RG+D+ VS V+ D +ED
Sbjct: 694 LHGGKGQEQR-----EFALSNLKAGAKD-ILVATDVAGRGIDIQDVSMVVNYDMAKNIED 747
Query: 549 HLHRIGRTARAGCEGESLLFL 569
++HRIGRT RAG G ++ FL
Sbjct: 748 YIHRIGRTGRAGKSGVAITFL 768
>At1g51380 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 392
Score = 96.3 bits (238), Expect = 2e-19
Identities = 99/444 (22%), Positives = 185/444 (41%), Gaps = 89/444 (20%)
Query: 150 TFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPI 209
+FD G+ D ++ + KP++IQ+ + P L+ + D+ AQ+G+GKT + +
Sbjct: 23 SFDDMGMNDKVLRGV-YDYGYKKPSEIQQRALVPILKGR-DVIAQAQSGTGKTSMIAISV 80
Query: 210 FQSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSE 269
Q + + + LV++P+RELA+Q + + + IGG+ +
Sbjct: 81 CQIVNISSRKVQ------VLVLSPSRELASQTEKTIQAIGAHTNIQAHAC-IGGKSIGED 133
Query: 270 KARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEIL 329
+L +G + + GTPGRV D ++ + +++ +VLDE D+++ G ++ + ++
Sbjct: 134 IKKLERGVHAVSGTPGRVYDMIKRGSL----QTKAVKLLVLDESDEMLSKGLKDQIYDV- 188
Query: 330 NIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVP 389
+ LP I L SAT+ + ++ ++ T V
Sbjct: 189 ------------YRALPHDIQVCLISATLPQEILEM--------------TEKFMTDPV- 221
Query: 390 DQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSD------VTRTIVFLSCSDSVDF 443
+I++ P +L L + + ++ +K + D + + I+F + VD+
Sbjct: 222 -----RILVKPDELTLEGIKQYYVDVDKEEWKFDTLCDLYGRLTINQAIIFCNTRQKVDW 276
Query: 444 HYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLK 503
E S N I +HG Q+ R +
Sbjct: 277 LTEKMRS-------------------------------SNFIVSSMHGDKRQKERDDIMN 305
Query: 504 HFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEG 563
F + K +L +DV +RG+D+ VS VI D P E ++HRIGR R G EG
Sbjct: 306 QFRS------FKSRVLIASDVWARGIDVQTVSHVINYDIPNNPELYIHRIGRAGRFGREG 359
Query: 564 ESLLFLLPGEEEGYMDYIKPYHPK 587
++ F+ + + D + Y K
Sbjct: 360 VAINFVKSSDMKDLKDIERHYGTK 383
>Hs9966805 [A] KOG0347 RNA helicase
Length = 859
Score = 95.5 bits (236), Expect = 3e-19
Identities = 96/371 (25%), Positives = 163/371 (43%), Gaps = 50/371 (13%)
Query: 229 LVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVL 288
LV+TPTRELA Q+ Q +A+ + +L+GG + ++ L + ++ TPGR+
Sbjct: 391 LVLTPTRELAVQVKQHIDAVARFTG-IKTAILVGGMSTQKQQRMLNRRPEIVVATPGRLW 449
Query: 289 DHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKR 348
+ ++ L LR +V+DE D+++E G L ++L +++ D+ PK
Sbjct: 450 ELIKEKHYHLRNLR-QLRCLVVDEADRMVEKGHFAELSQLLEMLN----DSQYNPKRQTL 504
Query: 349 ILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTL 408
+ + + L K+ + T D L+QKI + K +++ L
Sbjct: 505 VFSATLTLVHQAPARILHK----------KHTKKMDKTAKLDLLMQKIGM-RGKPKVIDL 553
Query: 409 AGSLTTITQKHYKEGSKSDVTRTIVFLSC-SDSVDFHYEVFSSHDGNHRGLVGDTARLLT 467
+ T+ T T + C +D DF+ F + ++ +
Sbjct: 554 TRNEATVE------------TLTETKIHCETDEKDFYLYYFLMQYPGRSLVFANSISCIK 601
Query: 468 KGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASR 527
+ + +L + ++ LH + Q+ R L+ FA D +L TDVA+R
Sbjct: 602 RLSGLLKVLD------IMPLTLHACMHQKQRLRNLEQFARLEDC------VLLATDVAAR 649
Query: 528 GLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEEEGYMDYIKPYHPK 587
GLD+P V VI P E ++HR GRTARA EG SL+ + P E +++ K Y
Sbjct: 650 GLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNEGLSLMLIGP---EDVINFKKIY--- 703
Query: 588 GWKLLTYDEQV 598
K L DE +
Sbjct: 704 --KTLKKDEDI 712
>Hs9506931 [A] KOG0346 RNA helicase
Length = 547
Score = 95.5 bits (236), Expect = 3e-19
Identities = 77/230 (33%), Positives = 110/230 (47%), Gaps = 22/230 (9%)
Query: 171 SKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSL-GQNITRQSGCFAL 229
S+PT IQ+ IP L+ + DL A+TGSGKT A+ +P+ Q +L + L
Sbjct: 28 SRPTLIQEKAIPLALEGK-DLLARARTGSGKTAAYAIPMLQLLLHRKATGPVVEQAVRGL 86
Query: 230 VVTPTRELANQIYQVTSELAQCCHFLVPCLLIGG-ERKKSEKARLRKGANFIIGTPGRVL 288
V+ PT+ELA Q + +LA C V + E S++A L + + ++GTP R+L
Sbjct: 87 VLVPTKELARQAQSMIQQLATYCARDVRVANVSAAEDSVSQRAVLMEKPDVVVGTPSRIL 146
Query: 289 DHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKR 348
HLQ + +L SL +V+DE D L GFEE LK +L LP+
Sbjct: 147 SHLQQDSL---KLRDSLELLVVDEADLLFSFGFEEELKSLL-------------CHLPRI 190
Query: 349 ILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVI 398
L SAT +V L + L N + + Q PDQL Q V+
Sbjct: 191 YQAFLMSATFNEDVQALKELILHNPVTLKLQESQLPG---PDQLQQFQVV 237
>CE00839 [A] KOG0326 ATP-dependent RNA helicase
Length = 430
Score = 94.4 bits (233), Expect = 6e-19
Identities = 105/405 (25%), Positives = 157/405 (37%), Gaps = 98/405 (24%)
Query: 172 KPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVV 231
KP+ IQ+ I L Q D+ A+ G+GKT A+ +P+ + I + I A+V+
Sbjct: 65 KPSPIQEASIGVALTGQ-DILARAKNGTGKTGAYCIPVIEKIQPALKAIQ------AMVI 117
Query: 232 TPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLDHL 291
PTRELA Q Q+ EL++ V + GG + + RL + +I TPGR+LD L
Sbjct: 118 VPTRELALQTSQICVELSKHIQLKV-MVTTGGTDLRDDIMRLNGTVHLVIATPGRILD-L 175
Query: 292 QNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRILH 351
V K + +L VLDE DKL+ F+ L ++N LPK
Sbjct: 176 MEKGVAKMEHCKTL---VLDEADKLLSQDFQGILDRLINF-------------LPKERQV 219
Query: 352 VLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGS 411
+L SAT VT
Sbjct: 220 MLYSATFPNTVT------------------------------------------------ 231
Query: 412 LTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNS 471
+ QKH + + ++ + L + F E H + R L S
Sbjct: 232 --SFMQKHMHKPYEINLMEELTLLGVTQYYAFVQEKQKVH------CLNTLFRKLQINQS 283
Query: 472 ILPCFNDTDDPNVICYKL----------HGSLSQQTRTATLKHFATNNDATKGKHLILFC 521
I+ C N T ++ K+ H ++Q R F N L C
Sbjct: 284 IIFC-NSTQRVELLAKKITEIGYSCYYIHSKMAQNHRNRVFHDFRQGNCRN------LVC 336
Query: 522 TDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESL 566
+D+ +RG+D+ V+ VI D P E +LHRIGR+ R G G ++
Sbjct: 337 SDLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVAI 381
>At1g71280 [A] KOG0345 ATP-dependent RNA helicase
Length = 465
Score = 94.4 bits (233), Expect = 6e-19
Identities = 93/353 (26%), Positives = 157/353 (44%), Gaps = 91/353 (25%)
Query: 183 PFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVTPTRELANQIY 242
PFL + D+ + A TGSGKTLAFLLP + I + ++++PTREL+ QI+
Sbjct: 49 PFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIH 108
Query: 243 QVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLA 302
+V + C + + E+ +GAN +IGTPGR+ D ++ + + +
Sbjct: 109 KVARAVRL---DFAKCREVEADMNTLEE----EGANLLIGTPGRLSDMMKRMEFLDFR-- 159
Query: 303 PSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNV 362
+L ++LDE D+L+++GF++ + I++ +LPK+ L SAT V
Sbjct: 160 -NLEILILDEADRLLDMGFQKQVNYIIS-------------RLPKQRRTGLFSATQTQAV 205
Query: 363 TKLGNVTLQN-YKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYK 421
L L+N Y + QK ++ L ++I +LV
Sbjct: 206 ADLAKAGLRNPYLKCEADQKSSQ--------LVHLLIENKNKKLV--------------- 242
Query: 422 EGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDD 481
+ F++C+ VD+ GLV ++K S+
Sbjct: 243 ----------VFFMTCA-CVDYW------------GLV------ISKIPSL--------- 264
Query: 482 PNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHV 534
++ + HG + Q+ R L F +A+ G +L CTDVA+RGLD+P +
Sbjct: 265 KSISFFPTHGKMDQKGRDTALASF---TEASSG---VLLCTDVAARGLDIPGI 311
>Hs20551983 [A] KOG0345 ATP-dependent RNA helicase
Length = 325
Score = 94.0 bits (232), Expect = 8e-19
Identities = 74/212 (34%), Positives = 108/212 (50%), Gaps = 20/212 (9%)
Query: 174 TKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVTP 233
T +Q IP F++ D+ A TGSGKTLAF++PI + +L + + ++S A+++TP
Sbjct: 33 TPVQSATIPLFMR-NKDVAAEAVTGSGKTLAFVIPILEILLRREEKL-KKSQVGAIIITP 90
Query: 234 TRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLR-KGANFIIGTPGRVLDHLQ 292
TRELA QI +V S + L IGG + R + +G N I+ TPGR L+ +
Sbjct: 91 TRELAIQIDEVLSHFTKHFPEFSQILWIGGRNPGEDVERFKQQGGNIIVATPGR-LEDMF 149
Query: 293 NTKVIKEQLAP---SLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRI 349
K LA SL +VLDE D+L+++GFE ++ IL LPK+
Sbjct: 150 RRKAEGLDLASCVRSLDVLVLDEADRLLDMGFEASINTILEF-------------LPKQR 196
Query: 350 LHVLCSATVKGNVTKLGNVTLQNYKLISSGQK 381
L SAT V L L+N +S +K
Sbjct: 197 RTGLFSATQTQEVENLVRAGLRNPVRVSVKEK 228
>At1g31970 [A] KOG0331 ATP-dependent RNA helicase
Length = 537
Score = 93.6 bits (231), Expect = 1e-18
Identities = 60/162 (37%), Positives = 93/162 (57%), Gaps = 9/162 (5%)
Query: 172 KPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNI---TRQSGCFA 228
KP+ IQ P FL DL A+TGSGKTLAF +P +L + I +++
Sbjct: 136 KPSPIQSHTWP-FLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTC 194
Query: 229 LVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVL 288
LV++PTRELA QI V E + C C + GG K + + +R G + +IGTPGR+
Sbjct: 195 LVLSPTRELAVQISDVLREAGEPCGLKSIC-VYGGSSKGPQISAIRSGVDIVIGTPGRLR 253
Query: 289 DHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILN 330
D +++ + ++ +VVLDE D+++++GFEE ++ IL+
Sbjct: 254 DLIESNVLRLSDVS----FVVLDEADRMLDMGFEEPVRFILS 291
Score = 66.2 bits (160), Expect = 2e-10
Identities = 36/83 (43%), Positives = 48/83 (57%), Gaps = 6/83 (7%)
Query: 489 LHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVED 548
+HG+ +Q RT +L F +G +L TDVA+RGLD+P V VI P ED
Sbjct: 396 IHGNKAQSERTRSLSLFK------EGSCPLLVATDVAARGLDIPDVEVVINYTFPLTTED 449
Query: 549 HLHRIGRTARAGCEGESLLFLLP 571
++HRIGRT RAG +G + F P
Sbjct: 450 YVHRIGRTGRAGKKGVAHTFFTP 472
>7296165 [A] KOG0330 ATP-dependent RNA helicase
Length = 536
Score = 93.6 bits (231), Expect = 1e-18
Identities = 126/499 (25%), Positives = 207/499 (41%), Gaps = 70/499 (14%)
Query: 73 SSSNSTSAQAPVEPKRSRFDNSSNVEQPARVTQPLQLNSQIVSSLFTSSRNIDTVTNSNA 132
S + + +RS+FD + + A+ L L S+ L S+ + N++
Sbjct: 36 SKGKKQKGEPLISCRRSQFDLTQYEQTDAKFGS-LSLASK--GWLHNKSKGDFFILNASV 92
Query: 133 HDEKAEVTYSNAPLVGDTFDSFG--ITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQND 190
E+ + V + +S G I ++ +L V++ I T IQK +P +
Sbjct: 93 RGEELQ---QEMQTVDEFLESTGMQIHPQLLENLRVELGIKLLTGIQKQGMP-VVHGNEH 148
Query: 191 LFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGC-FALVVTPTRELANQIYQVTSELA 249
I A+TG GKT+ +LLPI +L R+ L++TP RELA QI VT +L
Sbjct: 149 CLIAAETGCGKTITYLLPIVDKLLQKEVVTERKLNTPRVLILTPGRELATQIAGVTEKLT 208
Query: 250 QCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVV 309
Q + V LL GG K+ + + ++ T G L L T + + + +R++V
Sbjct: 209 QGTNLKVQSLL-GGNTKQLMMNPQFEEVDILVATLG-ALSKLVTTGIYRME---QVRHLV 263
Query: 310 LDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVT 369
LDE D L++ F + L L H K +L SAT+ N ++ +
Sbjct: 264 LDEADTLLDDTFTDKLSYFLR-----RFPFHLVQKEDAGTQMILASATMPTNTREILH-- 316
Query: 370 LQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVT 429
K + T+ + +V P L + ++ +TQK + SK+D
Sbjct: 317 -----------KVIDVDTIRE-------VVSPHLHRL-----MSHVTQK-FLRLSKADRP 352
Query: 430 RTIVFLSCSDSVDFHYEVFSSHD-GNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYK 488
T++ L HD R L+ + + T + + F ++ V C
Sbjct: 353 ATLLSL-------------VKHDLAKRRPLIVFSNKSTT--SDFVSIF--LNNSGVNCLN 395
Query: 489 LHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVED 548
L+G + + R + F G +L TDV SRGLD V+ D P V D
Sbjct: 396 LNGDMLMKIRLGRFEQF------QNGHCDVLSTTDVGSRGLDTTRARHVVNFDFPLHVSD 449
Query: 549 HLHRIGRTARAGCEGESLL 567
++HR GR R G ++L+
Sbjct: 450 YIHRCGRIGRVGNMDKALV 468
>ECU09g1200 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 425
Score = 92.8 bits (229), Expect = 2e-18
Identities = 106/419 (25%), Positives = 176/419 (41%), Gaps = 70/419 (16%)
Query: 149 DTFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLP 208
DT++ +G+ + ++ + + P+ IQK I P + + D+ AQ+G+GKT AF +
Sbjct: 38 DTWEDYGLKEDLLKGI-YSIGFETPSFIQKAAIQPIIDGR-DIRAQAQSGTGKTGAFAVA 95
Query: 209 IFQSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKS 268
Q I + Q++T+ LV+ TRE+A Q +L C LL GG +
Sbjct: 96 ALQ-ICDMSQDVTQ-----ILVLASTREIAAQNAARFEDLG-CFMGARVALLSGGSPIAA 148
Query: 269 EKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEI 328
+K L K + ++GTPGRV +H+ N I E +++ V+DE D++++ GF+E +K I
Sbjct: 149 DKVALEKKPHIVVGTPGRV-EHMIN---INELSMDNIKLFVIDEADEMLKAGFQEQVKSI 204
Query: 329 LNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTV 388
I D + + SAT ++ L N +I + +T
Sbjct: 205 FRRITNKD-----------EVQIAMFSATYDEEELRVSEEILINPVIIDL-RYNDQTLKG 252
Query: 389 PDQLLQKIVIVPP--KLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYE 446
Q + PP K R L L T+ Y K + ++IVF++ + Y+
Sbjct: 253 IRQYFIDLRKEPPFRKGREDYLLPKLVTL----YDIFRKQRLGQSIVFINSKEDARIVYD 308
Query: 447 VFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFA 506
H+ C + L+Q R TL F
Sbjct: 309 WLIRHEWE-------------------------------CELISAELTQAERERTLNRF- 336
Query: 507 TNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPF--AVEDHLHRIGRTARAGCEG 563
G L + + SRG+D+ ++S V +D P ++HRIGR+ R G +G
Sbjct: 337 -----RGGTGRCLISSGLLSRGIDIQNLSVVFCLDVPSFERKSTYIHRIGRSGRYGRKG 390
>7295505 [A] KOG0346 RNA helicase
Length = 560
Score = 92.0 bits (227), Expect = 3e-18
Identities = 102/403 (25%), Positives = 173/403 (42%), Gaps = 51/403 (12%)
Query: 172 KPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVV 231
+PT IQ IP L+ + D+ + A+TGSGKT + LP+ Q IL+ N + Q A+V+
Sbjct: 31 QPTLIQSTAIPLLLEGK-DVVVRARTGSGKTATYALPLIQKILNSKLNASEQY-VSAVVL 88
Query: 232 TPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKK--SEKARLRKGANFIIGTPGRVLD 289
PT++L Q +V +L + C +V I +++ L + + ++ TP +L
Sbjct: 89 APTKKLCRQSRKVIEQLVESCGKVVRVADIADSSNDTVTQRHALSESPDIVVATPANLLA 148
Query: 290 HLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRI 349
+ + V+ + +L V+DE D + G+E+ K ++ LP
Sbjct: 149 YAEAGSVVDLKHVETL---VVDEADLVFAYGYEKDFKRLIK-------------HLPPIY 192
Query: 350 LHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVP-DQLLQKIVIVPPKLRLVTL 408
VL SAT+ +V ++ + L N + K E VP DQL + ++ + L
Sbjct: 193 QAVLVSATLTDDVVRMKGLCLNNPVTL----KLEEPELVPQDQLSHQRILAEENDKPAIL 248
Query: 409 AGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEV--FSSHDGNHRGLVGDTARLL 466
L + ++I+F+ +S+D Y+V F G ++
Sbjct: 249 YALLKLRLIR----------GKSIIFV---NSIDRCYKVRLFLEQFGIRACVLNSELPAN 295
Query: 467 TKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVAS 526
+ ++I FN +I H ++AT + + D AS
Sbjct: 296 IRIHTISQ-FNKGTYDIIIASDEHHMEKPGGKSATNRKSPRSGDMESS----------AS 344
Query: 527 RGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFL 569
RG+D V+ VI D P V ++HR GRTAR +G L F+
Sbjct: 345 RGIDFQCVNNVINFDFPRDVTSYIHRAGRTARGNNKGSVLSFV 387
>YOR046c [A] KOG0332 ATP-dependent RNA helicase
Length = 482
Score = 91.3 bits (225), Expect = 5e-18
Identities = 112/450 (24%), Positives = 192/450 (41%), Gaps = 87/450 (19%)
Query: 143 NAPLVG-DTFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQ-AQNDLFIHAQTGSG 200
N+PL +FD G+ ++ + MK KP+KIQ+ +P L ++ +Q+G+G
Sbjct: 85 NSPLYSAKSFDELGLAPELLKGIYA-MKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTG 143
Query: 201 KTLAFLLPIFQSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCLL 260
KT AF L + + ++ + Q+ C A P+RELA Q +V E+ + + L+
Sbjct: 144 KTAAFSLTMLTRVNP--EDASPQAICLA----PSRELARQTLEVVQEMGKFTK-ITSQLI 196
Query: 261 IGGERKKSEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELG 320
+ +K+++ A I+GTPG VLD L K+++ Q ++ VLDE D +++
Sbjct: 197 VPDSFEKNKQI----NAQVIVGTPGTVLD-LMRRKLMQLQ---KIKIFVLDEADNMLD-- 246
Query: 321 FEETLKEILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQ 380
++ L + I +F LPK VL SAT V + + N +
Sbjct: 247 -QQGLGDQC-------IRVKRF--LPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQT 296
Query: 381 KQTETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDS 440
+ + QL K ++T L TI GS +I+F++ +
Sbjct: 297 NEVNVDAI-KQLYMDCKNEADKFDVLTELYGLMTI-------GS------SIIFVATKKT 342
Query: 441 VDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTA 500
+ Y +L ++G+ + LHG L Q R
Sbjct: 343 ANVLY-----------------GKLKSEGHEV--------------SILHGDLQTQERDR 371
Query: 501 TLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVE------DHLHRIG 554
+ +D +G+ +L T+V +RG+D+P VS V+ D P ++HRIG
Sbjct: 372 LI------DDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIG 425
Query: 555 RTARAGCEGESLLFLLPGEEEGYMDYIKPY 584
RT R G +G ++ F+ + I+ Y
Sbjct: 426 RTGRFGRKGVAISFVHDKNSFNILSAIQKY 455
>Hs14251212 [K] KOG4284 DEAD box protein
Length = 824
Score = 90.9 bits (224), Expect = 6e-18
Identities = 109/414 (26%), Positives = 179/414 (42%), Gaps = 82/414 (19%)
Query: 172 KPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVV 231
+P+ +Q IP + DL + A++G+GKT F S++ +N++ Q L++
Sbjct: 84 RPSPVQLKAIP-LGRCGLDLIVQAKSGTGKTCVFSTIALDSLVL--ENLSTQ----ILIL 136
Query: 232 TPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLDHL 291
PTRE+A QI+ V + + L + IGG +K RL+K + +G+PGR+ +
Sbjct: 137 APTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKK-CHIAVGSPGRIKQLI 195
Query: 292 QNTKVIKEQLAP-SLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRIL 350
+ + L P S+R +LDE DKL+E E + +E +N I + LP
Sbjct: 196 E-----LDYLNPGSIRLFILDEADKLLE---EGSFQEQINWI---------YSSLP---- 234
Query: 351 HVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQL---LQKIVIVPPKLRLVT 407
+S Q + T P+ L L K + P +RL +
Sbjct: 235 --------------------------ASKQMLAVSATYPEFLANALTKYMRDPTFVRLNS 268
Query: 408 LAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLT 467
SL + Q +YK + + + + E+FS N + LV + L +
Sbjct: 269 SDPSLIGLKQ-YYKVVNSYPLAHKVF----EEKTQHLQELFSRIPFN-QALV--FSNLHS 320
Query: 468 KGNSILPCFNDTDDPNVICYKLHGSLSQQTRT---ATLKHFATNNDATKGKHLILFCTDV 524
+ + + P + G+++Q R A LKHF +L TD+
Sbjct: 321 RAQHLADILSSKGFPAEC---ISGNMNQNQRLDAMAKLKHFHCR---------VLISTDL 368
Query: 525 ASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEEEGYM 578
SRG+D V+ V+ +D P E ++HRIGR R G G ++ + GEEE M
Sbjct: 369 TSRGIDAEKVNLVVNLDVPLDWETYMHRIGRAGRFGTLGLTVTYCCRGEEENMM 422
>At3g09720 [A] KOG0344 ATP-dependent RNA helicase
Length = 545
Score = 90.5 bits (223), Expect = 8e-18
Identities = 128/567 (22%), Positives = 224/567 (38%), Gaps = 108/567 (19%)
Query: 2 SFNDDDDGMLLNFTTDVSDASETVSRGKITGGKWKDRRKAKMMMEGRKPRVRGEKRPLES 61
S DDD +NF + + +E + +A+ ++ K R R +
Sbjct: 29 STEDDDSNKKVNFFVEEEEDTE--------------QPEAEKVIVSSKKRKRRSSNSVPV 74
Query: 62 DGAPTFEELEASSSNSTSAQAPVEPKRSRFDNSSNVEQPARVTQPLQLNSQIVSSLFTSS 121
+G F+ SS A+ E + ++ + N ++ S+ S+ S
Sbjct: 75 EGFDVFK-----SSKKARAKGKAEEQITKNEIVENPKKELNRQMERDALSRKQYSIHVSG 129
Query: 122 RNIDTVTNSNAHDEKAEVTYSNAPLVGDTFDSFGITDTMVSHLNVKMKISKPTKIQKLVI 181
NI S A + +G ++ +L ++ +PT IQ+ I
Sbjct: 130 NNIPPPLKSFA----------------ELSSRYGCEGYILRNL-AELGFKEPTPIQRQAI 172
Query: 182 PPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVTPTRELANQI 241
P L + + F A TGSGKT AF+ P+ + L G A++++P RELA Q
Sbjct: 173 PILLSGR-ECFACAPTGSGKTFAFICPMLIKLKVLNCR-PSTDGIRAVILSPARELAAQT 230
Query: 242 YQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQL 301
+ +L + +F + L+ K ++ ++L + +I TP R+ ++ K+ +
Sbjct: 231 AREGKKLIKGSNFHIR-LMTKPLVKTADFSKL--WCDVLISTPMRLKRAIKAKKIDLSK- 286
Query: 302 APSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGN 361
+ Y+VLDE DKL E + LK+I ++ + I+ L SAT+ +
Sbjct: 287 ---VEYLVLDESDKLFE---QSLLKQIDCVVKACSNPS---------IIRSLFSATLPDS 331
Query: 362 VTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYK 421
V +L + + + G+K T + TV QK+V + G L + Q +
Sbjct: 332 VEELARSIMHDAVRVIIGRKNTASETVK----QKLVFAGSE------EGKLLALRQS-FA 380
Query: 422 EGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDD 481
E V ++F+ + Y+ L C
Sbjct: 381 ESLNPPV---LIFVQSKERAKELYDE-------------------------LKC------ 406
Query: 482 PNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMD 541
N+ +H L R + F G+ +L TDV +RG+D ++ VI D
Sbjct: 407 ENIRAGVIHSDLPPGERENAVDQFRA------GEKWVLIATDVIARGMDFKGINCVINYD 460
Query: 542 PPFAVEDHLHRIGRTARAGCEGESLLF 568
P + ++HRIGR+ RAG GE++ F
Sbjct: 461 FPDSASAYIHRIGRSGRAGRSGEAITF 487
>SPAC17G6.14c [A] KOG0329 ATP-dependent RNA helicase
Length = 434
Score = 89.4 bits (220), Expect = 2e-17
Identities = 102/414 (24%), Positives = 177/414 (42%), Gaps = 79/414 (19%)
Query: 173 PTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVT 232
P+++Q++ IP + D+ A++G GKT F+L Q I + ++ LV+
Sbjct: 74 PSEVQQVCIPQSILG-TDVLCQAKSGMGKTAVFVLSTLQQIEPVDGEVS------VLVLC 126
Query: 233 PTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLR---KGANFIIGTPGRVLD 289
TRELA QI + ++ + + GG K + + K + ++ TPGR L+
Sbjct: 127 HTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIVVATPGR-LN 185
Query: 290 HLQNTKVIKEQLAPSLRYVVLDEGDKLME-LGFEETLKEILNIIHGIDIDTHQFPKLPKR 348
L K++K S+++ VLDE DKL+E + ++E+ F P +
Sbjct: 186 ALVREKILK---VNSVKHFVLDECDKLLESVDMRRDIQEV-------------FRATPPQ 229
Query: 349 ILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTL 408
++ SAT+ + + +QN L+ V KL L L
Sbjct: 230 KQVMMFSATLSNEIRPICKKFMQN-------------------PLEIYVDDETKLTLHGL 270
Query: 409 AGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTK 468
Q+HY + + R I L DS++F+ V + +++
Sbjct: 271 --------QQHYVKLEEKAKNRKINDL--LDSLEFNQVVI-------------FVKSVSR 307
Query: 469 GNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRG 528
N + + + P++ +HG L Q+ R +K + D K I TDV RG
Sbjct: 308 ANELDRLLRECNFPSIC---IHGGLPQEER---IKRYKAFKDFDK---RICVATDVFGRG 358
Query: 529 LDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEEEGYMDYIK 582
+D+ V+ VI D P + + +LHR+GR R G +G ++ F E+ +D I+
Sbjct: 359 IDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLAITFSSSEEDSQILDKIQ 412
>7296530 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 727
Score = 89.4 bits (220), Expect = 2e-17
Identities = 90/346 (26%), Positives = 150/346 (43%), Gaps = 46/346 (13%)
Query: 228 ALVVTPTRELANQIYQVTSELAQCCHFLVP----CLLIGGERKKSEKARLRKGANFIIGT 283
A+++ P+RELA Q Y + H P LLIGG R + +KA+L +G + ++GT
Sbjct: 289 AIIMEPSRELAEQTYNQIEKFKY--HLSNPEVRSLLLIGGVRLEEQKAQLMQGTHIVVGT 346
Query: 284 PGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFP 343
PGR L+ + N+ ++ L R+ VLDE D L++ G+ E + + I I D
Sbjct: 347 PGR-LEEMINSGLV---LLTHCRFFVLDEADALLKQGYTELIDRLHKQIPKITSD----- 397
Query: 344 KLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPK- 402
+R+ V+CSAT+ K L ++ + + VP+ + + +V P+
Sbjct: 398 --GRRLQMVVCSATLHAFEVKKMAERLMHFPTWVDLKGE---DAVPETVHHVVCLVDPQM 452
Query: 403 ------LRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLS---CSDSVDFHYEVFSSHDG 453
LR + H SK +++ + L C ++D H
Sbjct: 453 DTTWQSLRQPIGTDGVHDRDNVHPGNHSKETLSQAVKLLKGEYCVHAIDKH--------N 504
Query: 454 NHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATK 513
R ++ R +++ + C LHG Q R L+ F +
Sbjct: 505 MDRAII--FCRTKQDCDNLERFLRQRGGKHYSCVCLHGDRKPQERKENLEMF------KR 556
Query: 514 GKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARA 559
+ L CTDVA+RGLD+ + +I + P +++HRIGR RA
Sbjct: 557 QQVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRA 602
>Hs4826686 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 740
Score = 88.2 bits (217), Expect = 4e-17
Identities = 94/365 (25%), Positives = 156/365 (41%), Gaps = 45/365 (12%)
Query: 228 ALVVTPTRELANQIYQVTSELAQCCHF--LVPCLLIGGERKKSEKARLRKGANFIIGTPG 285
AL+V P+RELA Q + + L L+IGG + + + L G + ++GTPG
Sbjct: 289 ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG 348
Query: 286 RVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKL 345
R+ D + K+ Q +R++VLDE D L+ G+ + + + N I + D
Sbjct: 349 RLDDLVSTGKLNLSQ----VRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSD------- 397
Query: 346 PKRILHVLCSATVKG-NVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLR 404
KR+ ++CSAT+ +V KL + + + +VPD + +V V PK
Sbjct: 398 GKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED----SVPDTVHHVVVPVNPKTD 453
Query: 405 LV--TLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDT 462
+ L S H K+ ++ ++ + Y V + + H+ D
Sbjct: 454 RLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE--HK---MDQ 508
Query: 463 ARLLTKGNSILPCFN------------DTDDPNVICYKLHGSLSQQTRTATLKHFATNND 510
A + + + + C N D C LHG R L+ F
Sbjct: 509 AIIFCR--TKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF----- 561
Query: 511 ATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLL 570
KG L CTDVA+RG+D+ V VI + P ++++HRIGR RA G ++ +
Sbjct: 562 -KKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA 620
Query: 571 PGEEE 575
+E+
Sbjct: 621 TEKEK 625
>ECU02g1520 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 425
Score = 88.2 bits (217), Expect = 4e-17
Identities = 113/484 (23%), Positives = 198/484 (40%), Gaps = 95/484 (19%)
Query: 107 LQLNSQIVSSLFTSSRNIDTVTNSNAHDEKAEVTYSNAP--LVGDTFDSFGITDTMVSHL 164
+Q + ++ LFT ++ T + + V LV + F G++D ++ +
Sbjct: 7 IQDDKEVARELFTMIKHDTTAIETGLDGSISGVGTDRGQKLLVAEHFSDMGLSDELLKAI 66
Query: 165 NVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQS 224
KP+ IQK IP L+ N + + +++G+GKT+A+ + + +G+
Sbjct: 67 -YNQGFEKPSLIQKSAIPHILRGHN-VVVQSKSGTGKTIAYTCGVLGNT-KIGERTQ--- 120
Query: 225 GCFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTP 284
+VVTPTREL+ Q+ +V S LA V L K G ++G+P
Sbjct: 121 ---VMVVTPTRELSTQVTEVISGLAGPLGIKVFSAL-------KNKITDSIGEEVVVGSP 170
Query: 285 GRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLK-EILNIIHGIDIDTHQFP 343
G +L ++ K+ + ++ +VLDE D L++ T IL +I G +
Sbjct: 171 GTILKLMELGKLNYK----GVKMIVLDEADILLDKDMMGTQTFRILKLISGAQM------ 220
Query: 344 KLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKL 403
+ SAT V + T++ Y + + E PD++ KL
Sbjct: 221 --------IFFSATFSEQVKQ----TIEFY-APDAVKMYEERNGKPDEI---------KL 258
Query: 404 RLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTA 463
+ G K E +++ I+F+S +V++ +
Sbjct: 259 FYIEAEGENKRRALKSLYE--YLSISQMIIFVSTKATVNYLRKKL--------------- 301
Query: 464 RLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTD 523
+ D +V C LHG L + R + F ++ K IL TD
Sbjct: 302 --------------EDDLHSVSC--LHGDLEIEEREKAVGDFRSS------KSKILLTTD 339
Query: 524 VASRGLDLPHVSTVIEMDPPF-----AVEDHLHRIGRTARAGCEGESLLFLLPGEEEGYM 578
V SRG+D+P V+ ++ D P + + ++HRIGR+ R G G + F+ E E Y+
Sbjct: 340 VFSRGMDIPQVNLIVNYDLPIYRGVASTQTYIHRIGRSGRFGRTGFVVDFVRDEELEAYL 399
Query: 579 DYIK 582
+ K
Sbjct: 400 SFQK 403
>At5g11170 [A] KOG0329 ATP-dependent RNA helicase
Length = 435
Score = 87.8 bits (216), Expect = 5e-17
Identities = 102/415 (24%), Positives = 175/415 (41%), Gaps = 83/415 (20%)
Query: 173 PTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVT 232
P+++Q IP + D+ A++G GKT F+L Q I ++ ALV+
Sbjct: 69 PSEVQHECIPQAILGM-DVICQAKSGMGKTAVFVLSTLQQIEPSPGQVS------ALVLC 121
Query: 233 PTRELANQIYQVTSELAQCCHFLVPC---LLIGGERKKSEKARLRKGA-NFIIGTPGRVL 288
TRELA YQ+ +E + +L + GG K K L+ + ++GTPGRVL
Sbjct: 122 HTRELA---YQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVL 178
Query: 289 DHLQNTKVIKEQLAPSLRYVVLDEGDKLME-LGFEETLKEILNIIHGIDIDTHQFPKLPK 347
+ K+ ++R+ +LDE DK++E L ++EI F P
Sbjct: 179 ALARE----KDLSLKNVRHFILDECDKMLESLDMRRDVQEI-------------FKMTPH 221
Query: 348 RILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVT 407
++ SAT+ + + +Q+ + V + +L T
Sbjct: 222 DKQVMMFSATLSKEIRPVCKKFMQD---------------------PMEIYVDDEAKL-T 259
Query: 408 LAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLT 467
L G + +HY + S+ + TR + L D++DF+ V V +R
Sbjct: 260 LHGLV-----QHYIKLSEMEKTRKLNDLL--DALDFNQVVI---------FVKSVSRAAE 303
Query: 468 KGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASR 527
++ C N +H +SQ+ R K F +G IL TD+ R
Sbjct: 304 LNKLLVEC-------NFPSICIHSGMSQEERLTRYKSFK------EGHKRILVATDLVGR 350
Query: 528 GLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEEEGYMDYIK 582
G+D+ V+ VI D P + + +LHR+GR R G +G ++ F+ + ++ ++
Sbjct: 351 GIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQ 405
>At4g09730 [A] KOG0331 ATP-dependent RNA helicase
Length = 496
Score = 86.3 bits (212), Expect = 2e-16
Identities = 77/291 (26%), Positives = 135/291 (45%), Gaps = 44/291 (15%)
Query: 49 KPRVRGEKRPLESDGAPTFEELEASSSNSTSAQAPVEPKRSRFDNSSNVEQPARVTQPLQ 108
KPR RPL S A T +S + T+ P + K + + +P Q
Sbjct: 34 KPRFHHAFRPLYSAAATT-----SSPTTETNVTDPDQLKHTILLERLRLRHLKESAKPPQ 88
Query: 109 LNSQIVSSLFTSSRNIDTVTNSNAHDEKAEVTYSNAPLVGDTFDSFGITDTMVSHLNVKM 168
V + +E++ + + LV + F G+++ ++ L ++
Sbjct: 89 QRPSSVVGV----------------EEESSIRKKSKKLV-ENFQELGLSEEVMGALQ-EL 130
Query: 169 KISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSI--------LSLGQNI 220
I PT+IQ + IP ++ ++ + + + TGSGKTLA+LLPI Q + +LG+
Sbjct: 131 NIEVPTEIQCIGIPAVMERKS-VVLGSHTGSGKTLAYLLPIVQVLSELMREDEANLGKK- 188
Query: 221 TRQSGCFALVVTPTRELANQIYQVTSELAQCCHF--LVPCLLIGGERKKSEKARLRKGAN 278
T+ +V+ PTREL+ Q+ L Q H L+ GG R + ++ L +
Sbjct: 189 TKPRRPRTVVLCPTRELSEQVC-----LHQDYHHARFRSILVSGGSRIRPQEDSLNNAID 243
Query: 279 FIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEIL 329
++GTPGR+L H++ ++ +A Y+VLDE D + + GF +++ L
Sbjct: 244 MVVGTPGRILQHIEEGNMVYGDIA----YLVLDEADTMFDRGFGPEIRKFL 290
Score = 52.4 bits (124), Expect = 3e-06
Identities = 37/108 (34%), Positives = 51/108 (46%), Gaps = 15/108 (13%)
Query: 466 LTKGNSILPCFNDTDDPNVICYKL----------HGSLSQQTRTATLKHFATNNDATKGK 515
L KG+ ++ N + + + L HG + + R LK F +G
Sbjct: 360 LAKGSKVMVFCNTLNSSRAVDHYLSENQISTVNYHGEVPAEQRVENLKKFKDE----EGD 415
Query: 516 HLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEG 563
L CTD+A+RGLDL V V+ D P D+LHR GRTAR G +G
Sbjct: 416 CPTLVCTDLAARGLDLD-VDHVVMFDFPKNSIDYLHRTGRTARMGAKG 462
>At5g11200 [A] KOG0329 ATP-dependent RNA helicase
Length = 427
Score = 85.9 bits (211), Expect = 2e-16
Identities = 101/415 (24%), Positives = 174/415 (41%), Gaps = 83/415 (20%)
Query: 173 PTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVT 232
P+++Q IP + D+ A++G GKT F+L Q I ++ ALV+
Sbjct: 69 PSEVQHECIPQAILGM-DVICQAKSGMGKTAVFVLSTLQQIEPSPGQVS------ALVLC 121
Query: 233 PTRELANQIYQVTSELAQCCHFLVPC---LLIGGERKKSEKARLRKGA-NFIIGTPGRVL 288
TRELA YQ+ +E + +L + GG K K L+ + ++GTPGRVL
Sbjct: 122 HTRELA---YQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVL 178
Query: 289 DHLQNTKVIKEQLAPSLRYVVLDEGDKLME-LGFEETLKEILNIIHGIDIDTHQFPKLPK 347
+ K+ ++R+ +LDE DK++E L ++EI F P
Sbjct: 179 ALARE----KDLSLKNVRHFILDECDKMLESLDMRRDVQEI-------------FKMTPH 221
Query: 348 RILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVT 407
++ SAT+ + + +Q+ + V + +L T
Sbjct: 222 DKQVMMFSATLSKEIRPVCKKFMQD---------------------PMEIYVDDEAKL-T 259
Query: 408 LAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLT 467
L G + +HY + S+ + R + L D++DF+ V V +R
Sbjct: 260 LHGLV-----QHYIKLSEMEKNRKLNDLL--DALDFNQVVI---------FVKSVSRAAE 303
Query: 468 KGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASR 527
++ C N +H +SQ+ R K F +G IL TD+ R
Sbjct: 304 LNKLLVEC-------NFPSICIHSGMSQEERLTRYKSFK------EGHKRILVATDLVGR 350
Query: 528 GLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEEEGYMDYIK 582
G+D+ V+ VI D P + + +LHR+GR R G +G ++ F+ + ++ ++
Sbjct: 351 GIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQ 405
>CE17559 [A] KOG0339 ATP-dependent RNA helicase
Length = 811
Score = 85.1 bits (209), Expect = 4e-16
Identities = 54/164 (32%), Positives = 87/164 (52%), Gaps = 10/164 (6%)
Query: 167 KMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGC 226
K + +PT IQ + IP L ++ L I A+TGSGKT A+L P I+ ++ G
Sbjct: 282 KSEYEQPTPIQAMAIPSALSGRDVLGI-AKTGSGKTAAYLWPAIVHIMDQ-PDLKAGEGP 339
Query: 227 FALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGR 286
A++V PTRELA Q++Q + + + C GG + + +GA ++ TPGR
Sbjct: 340 VAVIVVPTRELAIQVFQEAKKFCKVYNINPICAYGGGSKWEQSNELQNEGAEMVVCTPGR 399
Query: 287 VLDHLQNTKVIKEQLAPSLR--YVVLDEGDKLMELGFEETLKEI 328
++D ++K LR ++V DE D++ ++GFE +K I
Sbjct: 400 IID------LVKMGATNFLRTTFLVFDEADRMFDMGFEAQVKSI 437
Score = 59.7 bits (143), Expect = 2e-08
Identities = 33/75 (44%), Positives = 42/75 (56%), Gaps = 7/75 (9%)
Query: 489 LHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVED 548
LHG + Q R L F + K IL TDVA+RGLD+ + TVI D ++
Sbjct: 541 LHGDMLQAERNENLLKF-------RKKSQILVATDVAARGLDISEIRTVINFDMARDIDT 593
Query: 549 HLHRIGRTARAGCEG 563
H+HRIGRT RAG +G
Sbjct: 594 HVHRIGRTGRAGHKG 608
>At4g16630 [A] KOG0338 ATP-dependent RNA helicase
Length = 683
Score = 85.1 bits (209), Expect = 4e-16
Identities = 70/248 (28%), Positives = 114/248 (45%), Gaps = 45/248 (18%)
Query: 172 KPTKIQKLVIPPFLQAQNDLFIHAQTGSGK--------------------TLAFLLPIFQ 211
KPT IQ IP Q DL A TGSGK T AF LP +
Sbjct: 189 KPTPIQVQFIP---QEWRDLCASAITGSGKVSTRLMVLCNTEILFRYLTNTAAFALPTLE 245
Query: 212 SILSLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPC-LLIGGERKKSEK 270
+L + + L++TPTRELA QI+ + LAQ + C L++GG + ++
Sbjct: 246 RLLFRPKRVFATR---VLILTPTRELAVQIHSMIQNLAQFTD--IKCGLIVGGLSVREQE 300
Query: 271 ARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILN 330
LR + ++ TPGR++DHL+N+ + L ++LDE D+L++ GF + E++
Sbjct: 301 VVLRSMPDIVVATPGRMIDHLRNSMSVD---LDDLAVLILDEADRLLQTGFATEITELVR 357
Query: 331 IIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPD 390
+ PKR +L SAT+ V +L ++L +S+ + +
Sbjct: 358 L-------------CPKRRQTMLFSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLTE 404
Query: 391 QLLQKIVI 398
+ L++ +
Sbjct: 405 EYLREFFV 412
Score = 55.5 bits (132), Expect = 3e-07
Identities = 34/87 (39%), Positives = 53/87 (60%), Gaps = 6/87 (6%)
Query: 488 KLHGSLSQQTRTATLKHFATNNDAT-----KGKHLILFCTDVASRGLDLPHVSTVIEMDP 542
+LHG+L+Q R +++ T+ + K + L TDVA+RGLD+ V TVI
Sbjct: 439 ELHGNLTQAQRL-DVRNLGTSALFSLELFRKQEVDFLIATDVAARGLDIIGVQTVINYAC 497
Query: 543 PFAVEDHLHRIGRTARAGCEGESLLFL 569
P ++ ++HR+GRTARAG EG ++ F+
Sbjct: 498 PREIDSYVHRVGRTARAGREGYAVTFV 524
>CE00456 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 696
Score = 84.3 bits (207), Expect = 6e-16
Identities = 113/470 (24%), Positives = 198/470 (42%), Gaps = 85/470 (18%)
Query: 163 HLNVKMKISKPTKIQKLVIPP-FLQAQN-------DLFIHAQTGSGKTLAFLLPIFQSIL 214
HL V IS +Q V+P F + ++ D+ I A TGSGKT+ ++LP+ ++
Sbjct: 226 HLTVPSAISTWFPVQYAVLPSLFFEIRSPPPLRPRDVAIAAPTGSGKTICYVLPVLAAVG 285
Query: 215 SLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLR 274
S I + A+++ P + L QI L G + E +L
Sbjct: 286 SKPSKILQ-----AVILVPVQTLVAQIVDEFKRWNDESGVAKVVSLSGANDFEKEARQLA 340
Query: 275 KG-ANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIH 333
N I+ TP R++ HL +K+ LR++++DE D++ +L EE L + +
Sbjct: 341 SDPPNVIVATPARLVQHL-TSKIPPPIDLSKLRFLIVDEADRMGKLMREEWLDLVEFLCG 399
Query: 334 GID-----IDTHQFPKLPKRILHVLCSATVKGNV----------TKLGNVTLQNYKLISS 378
G++ D + + P++I + SAT+ +V +L + T + K I+S
Sbjct: 400 GMERVACLKDIIRQRRAPQKI---VLSATLSKDVEELHLWNLFKPRLFSATAVSVKDITS 456
Query: 379 GQKQTETTT----VPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVF 434
G Q + + +P + ++V+ PK + + Y++ +++ RT++F
Sbjct: 457 GIPQVDHVSGRLALPSSISHRLVVTDPKFHPLAV-----------YQQITRNKFNRTLIF 505
Query: 435 LSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLS 494
++ EV SS+ H + L K + F L
Sbjct: 506 VN---------EVSSSNRLAH------VLKELCKDQFEVDYFT-------------AQLF 537
Query: 495 QQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIG 554
+ R L+ F K ++ +L C+DV +RG DL V VI + P + +HR G
Sbjct: 538 GKRRYKMLEKF------NKNENRVLICSDVLARGTDLNKVDCVINYNLPADDKLFVHRAG 591
Query: 555 RTARAGCEGESLLFLLPGEEEGYMDYIKPYHPKGWKLLTYDEQVLRPAFE 604
RT RAG +G + G++E ++K T +EQ+ FE
Sbjct: 592 RTGRAGQDG---YVISVGDKESKRLFVKMLKVTNLWGDTVEEQMEEYIFE 638
>Hs8922886 [A] KOG0332 ATP-dependent RNA helicase
Length = 478
Score = 83.6 bits (205), Expect = 1e-15
Identities = 121/507 (23%), Positives = 204/507 (39%), Gaps = 92/507 (18%)
Query: 68 EELEASSSNSTSAQAPVEPKRSRFDNSSNVEQPARVTQPLQLNSQIVSSLFTSSRNIDTV 127
+E EA+ + T+ Q E ++ + A T + + SL + V
Sbjct: 11 DEQEAAVKSMTNLQIKEEKVKADTNGIIKTSTTAEKTDEEEKEDRAAQSLLNKLIRSNLV 70
Query: 128 TNSNAHDEKAEVTYS--NAPLVG-DTFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPF 184
N+N + EV N+PL +F+ + ++ + M ++P+KIQ+ +P
Sbjct: 71 DNTN----QVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPMM 125
Query: 185 L-QAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVTPTRELANQIYQ 243
L + +L +Q+G+GKT AF+L ++LS + R C L ++PT ELA Q +
Sbjct: 126 LAEPPQNLIAQSQSGTGKTAAFVL----AMLSRVEPSDRYPQC--LCLSPTYELALQTGK 179
Query: 244 VTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAP 303
V ++ + L + G K E+ + + +IGTPG VLD K I +
Sbjct: 180 VIEQMGKFYPELKLAYAVRG--NKLERGQ-KISEQIVIGTPGTVLDWCSKLKFIDPK--- 233
Query: 304 SLRYVVLDEGDKLMEL-GFEETLKEILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNV 362
++ VLDE D ++ G ++ I + LP+ +L SAT + +V
Sbjct: 234 KIKVFVLDEADVMIATQGHQDQSIRIQRM-------------LPRNCQMLLFSATFEDSV 280
Query: 363 TKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKE 422
K QK+V P ++L +L TI Q +
Sbjct: 281 WKFA---------------------------QKVVPDPNVIKLKREEETLDTIKQYYVLC 313
Query: 423 GSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDP 482
S+ + + + L ++ + H + A L +G+ +
Sbjct: 314 SSRDEKFQALCNL--YGAITIAQAMIFCHTRKTASWL--AAELSKEGHQVA--------- 360
Query: 483 NVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDP 542
L G + + R A ++ F +GK +L T+V +RG+D+ VS VI D
Sbjct: 361 -----LLSGEMMVEQRAAVIERF------REGKEKVLVTTNVCARGIDVEQVSVVINFDL 409
Query: 543 PFAV------EDHLHRIGRTARAGCEG 563
P E +LHRIGRT R G G
Sbjct: 410 PVDKDGNPDNETYLHRIGRTGRFGKRG 436
>At3g09620 [A] KOG0334 RNA helicase
Length = 989
Score = 83.6 bits (205), Expect = 1e-15
Identities = 67/247 (27%), Positives = 119/247 (48%), Gaps = 9/247 (3%)
Query: 87 KRSRFDNSSNVEQPARVTQPLQLNSQIVSSLFTSSRNIDTVTNSNAHDEKAEVTYSNAPL 146
K+++ + S V+ +P + N I + SR N+ + + +V + P
Sbjct: 336 KKTKAEKLSLVDHSKIEYEPFRKNFYI--EVKDISRMTQDAVNAYRKELELKVHGKDVPR 393
Query: 147 VGDTFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFL 206
+ G+T ++ L K+ KP IQ +P + ++ + + A+TGSGKTL F+
Sbjct: 394 PIQFWHQTGLTSKILDTLK-KLNYEKPMPIQAQALPIIMSGRDCIGV-AKTGSGKTLGFV 451
Query: 207 LPIFQSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQCCHFL-VPCLLIGGER 265
LP+ + I + G LV+ PTREL QIY + ++ + VP + GG
Sbjct: 452 LPMLRHIKD-QPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGIICVP--VYGGSG 508
Query: 266 KKSEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETL 325
+ + L++G ++ TPGR++D L T K + Y+V+DE D++ ++GFE +
Sbjct: 509 VAQQISELKRGTEIVVCTPGRMIDIL-CTSSGKITNLRRVTYLVMDEADRMFDMGFEPQI 567
Query: 326 KEILNII 332
I+ I
Sbjct: 568 TRIVQNI 574
Score = 53.9 bits (128), Expect = 9e-07
Identities = 25/65 (38%), Positives = 40/65 (61%)
Query: 518 ILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFLLPGEEEGY 577
+L T VA+RGLD+ + V+ D P ED++HR+GRT RAG +G ++ F+ + +
Sbjct: 667 LLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYA 726
Query: 578 MDYIK 582
D +K
Sbjct: 727 PDLVK 731
>SPBC12C2.06 [A] KOG0332 ATP-dependent RNA helicase
Length = 503
Score = 80.1 bits (196), Expect = 1e-14
Identities = 104/433 (24%), Positives = 171/433 (39%), Gaps = 103/433 (23%)
Query: 168 MKISKPTKIQKLVIPPFLQ-AQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGC 226
MK KP+KIQ+ +P L ++ +Q+G+GKT AF L + + ++ +
Sbjct: 132 MKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRV---DASVPKPQ-- 186
Query: 227 FALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGR 286
A+ + P+RELA QI V +E+ + + K S + A +IGTPG
Sbjct: 187 -AICLAPSRELARQIMDVVTEMGKYTEVKTAFGI-----KDSVPKGAKIDAQIVIGTPGT 240
Query: 287 VLDHLQNTKVIKEQLAPSLRYVVLDEGDKLM-ELGFEETLKEILNIIHGIDIDTHQFPKL 345
V+D ++ ++ A ++ VLDE D ++ + G + I ++ L
Sbjct: 241 VMDLMKR----RQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHL-------------L 283
Query: 346 PKRILHVLCSATVKGNVTK--------LGNVTLQNYKLISSGQKQTETTTVPDQLLQKIV 397
P+ VL SAT V K + L+ +L G KQ ++ +
Sbjct: 284 PRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNV- 342
Query: 398 IVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRG 457
LV L G LT + ++I+F D+ +
Sbjct: 343 -------LVELYGLLT--------------IGQSIIFCKKKDTAE--------------- 366
Query: 458 LVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHL 517
+ AR +T + C L G+L R A + F G
Sbjct: 367 ---EIARRMTADGHTVAC-------------LTGNLEGAQRDAIMDSFRV------GTSK 404
Query: 518 ILFCTDVASRGLDLPHVSTVIEMDPPF------AVEDHLHRIGRTARAGCEGESLLFLLP 571
+L T+V +RG+D+ V+ V+ D P + +LHRIGRT R G G S+ F+
Sbjct: 405 VLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHD 464
Query: 572 GEEEGYMDYIKPY 584
+ M+ I+ Y
Sbjct: 465 KKSWEEMNAIQEY 477
>Hs6005743 [A] KOG0332 ATP-dependent RNA helicase
Length = 479
Score = 79.3 bits (194), Expect = 2e-14
Identities = 114/481 (23%), Positives = 195/481 (39%), Gaps = 98/481 (20%)
Query: 92 DNSSNVEQPARVTQPLQLNSQIVSSLFTSSRNIDTVTNSNAHDEKAEVTYSNAPLVG-DT 150
+ + E+ R Q L LN I S+L ++ ++ + N+PL +
Sbjct: 46 EKTDEEEKEDRAAQSL-LNKLIRSNLVDNTNQVEVLQRD-----------PNSPLYSVKS 93
Query: 151 FDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFL-QAQNDLFIHAQTGSGKTLAFLLPI 209
F+ + ++ + M ++P+KIQ+ +P L + +L +Q+G+GKT AF+L
Sbjct: 94 FEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL-- 150
Query: 210 FQSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSE 269
++LS + + C L ++PT ELA Q +V ++ + L + G K E
Sbjct: 151 --AMLSQVEPANKYPQC--LCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRG--NKLE 204
Query: 270 KARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMEL-GFEETLKEI 328
+ + + +IGTPG VLD K I + ++ VLDE D ++ G ++ I
Sbjct: 205 RGQ-KISEQIVIGTPGTVLDWCSKLKFIDPK---KIKVFVLDEADVMIATQGHQDQSIRI 260
Query: 329 LNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTV 388
+ LP+ +L SAT + +V K
Sbjct: 261 QRM-------------LPRNCQMLLFSATFEDSVWKFA---------------------- 285
Query: 389 PDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVF 448
QK+V P ++L +L TI Q + S+ + + + L ++ +
Sbjct: 286 -----QKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNL--YGAITIAQAMI 338
Query: 449 SSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATN 508
H + A L +G+ + L G + + R A ++ F
Sbjct: 339 FCHTRKTASWL--AAELSKEGHQVA--------------LLSGEMMVEQRAAVIERF--- 379
Query: 509 NDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAV------EDHLHRIGRTARAGCE 562
+GK +L T+V +RG+D+ VS VI D P E +LHRIGRT R G
Sbjct: 380 ---REGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKR 436
Query: 563 G 563
G
Sbjct: 437 G 437
>At3g53110 [A] KOG0332 ATP-dependent RNA helicase
Length = 496
Score = 79.3 bits (194), Expect = 2e-14
Identities = 121/540 (22%), Positives = 201/540 (36%), Gaps = 101/540 (18%)
Query: 65 PTFEELEASS----SNSTSAQAPVEPKRSRFDNSSNVEQPARVTQPLQLNSQIVSSLFTS 120
PT E +SS SNS P K+ D + ++ V++ LNS +
Sbjct: 9 PTVVESSSSSTVEASNSAEKTEPTTEKKKWGDVEDDDDEEEAVSE---LNSLSIKE---- 61
Query: 121 SRNIDTVTNSNAHDEKAEVTYSNAPLVGDT-FDSFGITDTMVSHLNVKMKISKPTKIQKL 179
D++ VT + P + F+ ++ ++ L V+MK KP+KIQ +
Sbjct: 62 EEKPDSILEEPEDSNIKAVTSGDTPYTSASRFEDLNLSPELMKGLYVEMKFEKPSKIQAI 121
Query: 180 VIPPFL-QAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVTPTRELA 238
+P + L A GSGKT F+L +LS R+ AL + PTRELA
Sbjct: 122 SLPMIMTPPHKHLIAQAHNGSGKTTCFVL----GMLSRVDPTLREPQ--ALCICPTRELA 175
Query: 239 NQIYQVTSELAQCCHFLVPCLLIGGERKKSEKAR-LRKGANFIIGTPGRVLDHLQNTKVI 297
NQ +V ++ + + R R A+ +IGTPG L+
Sbjct: 176 NQNMEVLQKMGKFTGITAELAVPDSTRGAPAATRGAPVSAHVVIGTPGT----LKKWMAF 231
Query: 298 KEQLAPSLRYVVLDEGDKLMEL-GFEETLKEILNIIHGIDIDTHQFPKLPKRILHVLCSA 356
K L+ +V DE D ++ GF + +I+ I ++ P + +
Sbjct: 232 KRLGLNHLKILVFDEADHMLATDGFRDDSLKIMKDIGRVN------PNFQVLLFSATFNE 285
Query: 357 TVKGNVTKL----GNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSL 412
TVK V + + ++ L KQ + +Q KI ++ ++
Sbjct: 286 TVKDFVARTVKDPNQLFVKREDLALDSVKQYKVVCPKEQ--NKIEVIKDQIM-------- 335
Query: 413 TTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSI 472
D+ +TI+F+ S ++ L G +
Sbjct: 336 -----------ELGDIGQTIIFVKTKASAQKVHKA-----------------LAEMGYDV 367
Query: 473 LPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLP 532
+HG+L++ R +K F + +L TDV +RG D
Sbjct: 368 T--------------SVHGNLTESDRDKIVKEF------KECLTQVLIATDVIARGFDQQ 407
Query: 533 HVSTVIEMDPPFAVED-------HLHRIGRTARAGCEGESLLFLL-PGEEEGYMDYIKPY 584
V+ V+ + P E +LHR+GR R G +G LL G ++ M+ I+ Y
Sbjct: 408 RVNLVVNYNLPTKYETGEPDYEVYLHRVGRAGRFGRKGAVFNLLLDDGWDKEVMEKIEKY 467
>Hs21327697 [A] KOG0332 ATP-dependent RNA helicase
Length = 369
Score = 79.0 bits (193), Expect = 3e-14
Identities = 102/408 (25%), Positives = 167/408 (40%), Gaps = 92/408 (22%)
Query: 168 MKISKPTKIQKLVIPPFL-QAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGC 226
M ++P+KIQ++ +P L +L +Q+G+GKT AF+L + + +L + Q C
Sbjct: 1 MGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNAL--ELFPQCLC 58
Query: 227 FALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGAN----FIIG 282
A PT ELA Q +V ++ + C + I G R+ +G + IIG
Sbjct: 59 LA----PTYELALQTGRVVEQMGKFCVDVQVMYAIRGN-------RIPRGTDITKQIIIG 107
Query: 283 TPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMEL-GFEETLKEILNIIHGIDIDTHQ 341
TPG VLD K+I +R VLDE D +++ GF + H I I
Sbjct: 108 TPGTVLDWCFKLKLID---LTKIRVFVLDEADVMIDTQGFSD---------HSIRIQR-- 153
Query: 342 FPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPP 401
LP +L SAT + +V ++I+ P
Sbjct: 154 --ALPSECQMLLFSATFEDSVW---------------------------HFAERIIPDPN 184
Query: 402 KLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGD 461
++L +L I Q + + D + + + S ++ +F N + L
Sbjct: 185 VIKLRKEELTLNNIRQYYVLCEHRKDKYQALCNIYGSITIG-QAIIFCQTRRNAKWL--- 240
Query: 462 TARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFC 521
T ++ G+ + L G L+ + R + ++ F GK +L
Sbjct: 241 TVEMIQDGHQV--------------SLLSGELTVEQRASIIQRF------RDGKEKVLIT 280
Query: 522 TDVASRGLDLPHVSTVIEMDPPFA------VEDHLHRIGRTARAGCEG 563
T+V +RG+D+ V+ V+ D P E +LHRIGRT R G +G
Sbjct: 281 TNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKG 328
>CE18221 [A] KOG0332 ATP-dependent RNA helicase
Length = 613
Score = 79.0 bits (193), Expect = 3e-14
Identities = 98/415 (23%), Positives = 159/415 (37%), Gaps = 90/415 (21%)
Query: 168 MKISKPTKIQKLVIPPFL-QAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGC 226
M PT+IQ+ +P L + ++L AQ+G+GKT AF+L + + + N+
Sbjct: 227 MNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVLTM---LCRIDVNLMCPQ-- 281
Query: 227 FALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGR 286
+ + PT ELA QI +V ++ + L I G + + R + +IGTPG
Sbjct: 282 -CICLAPTLELAKQIGEVVEKMGKFIDNLKIHYAIKGGNMAAMRGR-KLTEQIVIGTPGI 339
Query: 287 VLDHLQNTKVIKEQLAPSLRYVVLDEGDKLM-ELGFEETLKEILNIIHGIDIDTHQFPKL 345
D+LQ K I +R +VLDE D ++ GF + I N++
Sbjct: 340 TRDYLQKYKCIDPS---KIRCLVLDEADVMIYHQGFTDISTTIYNMVEDAS--------- 387
Query: 346 PKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRL 405
+ +L SAT V ++N ++ +++ + +Q +
Sbjct: 388 -DSVQSMLFSATYDEPVINFATKIIKNAIVVMLKREEQALPNIKQFYVQCACRDSKYAAI 446
Query: 406 VTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARL 465
V L L V +++F SV + YE +
Sbjct: 447 VNLYSGLA--------------VASSVIFCHTKASVMWLYE-----------------NM 475
Query: 466 LTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVA 525
+G+ + LHG ++ R T+ HF +G +L T+V
Sbjct: 476 RARGHQV--------------DVLHGDMTVVERADTIIHF------KRGDFKVLITTNVF 515
Query: 526 SRGLDLPHVSTVIEMDPPFAVED-----------------HLHRIGRTARAGCEG 563
+RG+D+ VS VI D P D +LHRIGRT R G G
Sbjct: 516 ARGIDVAQVSVVINYDLPIKYTDEGTPMVVDGFTQPDCETYLHRIGRTGRFGKTG 570
>CE18220 [A] KOG0332 ATP-dependent RNA helicase
Length = 638
Score = 79.0 bits (193), Expect = 3e-14
Identities = 98/415 (23%), Positives = 159/415 (37%), Gaps = 90/415 (21%)
Query: 168 MKISKPTKIQKLVIPPFL-QAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGC 226
M PT+IQ+ +P L + ++L AQ+G+GKT AF+L + + + N+
Sbjct: 252 MNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVLTM---LCRIDVNLMCPQ-- 306
Query: 227 FALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGR 286
+ + PT ELA QI +V ++ + L I G + + R + +IGTPG
Sbjct: 307 -CICLAPTLELAKQIGEVVEKMGKFIDNLKIHYAIKGGNMAAMRGR-KLTEQIVIGTPGI 364
Query: 287 VLDHLQNTKVIKEQLAPSLRYVVLDEGDKLM-ELGFEETLKEILNIIHGIDIDTHQFPKL 345
D+LQ K I +R +VLDE D ++ GF + I N++
Sbjct: 365 TRDYLQKYKCIDPS---KIRCLVLDEADVMIYHQGFTDISTTIYNMVEDAS--------- 412
Query: 346 PKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRL 405
+ +L SAT V ++N ++ +++ + +Q +
Sbjct: 413 -DSVQSMLFSATYDEPVINFATKIIKNAIVVMLKREEQALPNIKQFYVQCACRDSKYAAI 471
Query: 406 VTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARL 465
V L L V +++F SV + YE +
Sbjct: 472 VNLYSGLA--------------VASSVIFCHTKASVMWLYE-----------------NM 500
Query: 466 LTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVA 525
+G+ + LHG ++ R T+ HF +G +L T+V
Sbjct: 501 RARGHQV--------------DVLHGDMTVVERADTIIHF------KRGDFKVLITTNVF 540
Query: 526 SRGLDLPHVSTVIEMDPPFAVED-----------------HLHRIGRTARAGCEG 563
+RG+D+ VS VI D P D +LHRIGRT R G G
Sbjct: 541 ARGIDVAQVSVVINYDLPIKYTDEGTPMVVDGFTQPDCETYLHRIGRTGRFGKTG 595
>CE18219 [A] KOG0332 ATP-dependent RNA helicase
Length = 1022
Score = 79.0 bits (193), Expect = 3e-14
Identities = 98/415 (23%), Positives = 159/415 (37%), Gaps = 90/415 (21%)
Query: 168 MKISKPTKIQKLVIPPFL-QAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGC 226
M PT+IQ+ +P L + ++L AQ+G+GKT AF+L + + + N+
Sbjct: 636 MNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVLTM---LCRIDVNLMCPQ-- 690
Query: 227 FALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGR 286
+ + PT ELA QI +V ++ + L I G + + R + +IGTPG
Sbjct: 691 -CICLAPTLELAKQIGEVVEKMGKFIDNLKIHYAIKGGNMAAMRGR-KLTEQIVIGTPGI 748
Query: 287 VLDHLQNTKVIKEQLAPSLRYVVLDEGDKLM-ELGFEETLKEILNIIHGIDIDTHQFPKL 345
D+LQ K I +R +VLDE D ++ GF + I N++
Sbjct: 749 TRDYLQKYKCIDPS---KIRCLVLDEADVMIYHQGFTDISTTIYNMVEDAS--------- 796
Query: 346 PKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRL 405
+ +L SAT V ++N ++ +++ + +Q +
Sbjct: 797 -DSVQSMLFSATYDEPVINFATKIIKNAIVVMLKREEQALPNIKQFYVQCACRDSKYAAI 855
Query: 406 VTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARL 465
V L L V +++F SV + YE +
Sbjct: 856 VNLYSGLA--------------VASSVIFCHTKASVMWLYE-----------------NM 884
Query: 466 LTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVA 525
+G+ + LHG ++ R T+ HF +G +L T+V
Sbjct: 885 RARGHQV--------------DVLHGDMTVVERADTIIHF------KRGDFKVLITTNVF 924
Query: 526 SRGLDLPHVSTVIEMDPPFAVED-----------------HLHRIGRTARAGCEG 563
+RG+D+ VS VI D P D +LHRIGRT R G G
Sbjct: 925 ARGIDVAQVSVVINYDLPIKYTDEGTPMVVDGFTQPDCETYLHRIGRTGRFGKTG 979
>YGL064c [A] KOG0335 ATP-dependent RNA helicase
Length = 561
Score = 77.8 bits (190), Expect = 6e-14
Identities = 96/415 (23%), Positives = 173/415 (41%), Gaps = 64/415 (15%)
Query: 175 KIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSIL-------SLGQNITRQSGCF 227
+I K ++ P LQ I A+TGSGKT+A+L+P+ + L + + +
Sbjct: 147 RISKNLMDPKLQIHA---IAAETGSGKTMAYLIPLIDYLKRQELETPELWETLRKNVLIR 203
Query: 228 ALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKA--------RLRKGANF 279
++++ PT EL +Q+Y+ S+ L+G K +KA ++ +
Sbjct: 204 SIILVPTHELVDQVYETVSKTKT---------LLGLNSFKWDKATSYRDLLENIKNRIDI 254
Query: 280 IIGTPGRVLDHLQNTKVIK-EQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDID 338
++ TPG++L+ + + +++ + +VVLDE D L++ + E +
Sbjct: 255 LVTTPGKLLNLFSIRMITRPDKVLSKVGFVVLDEADTLLDRSWLE--------------E 300
Query: 339 THQFPKLPKRILH-VLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIV 397
TH K I H + CSAT+ K I + + + +++ +
Sbjct: 301 THSAIKRIPNINHLIFCSATIPQEFNKTMQRLFPTVVPIMTPRLHKLPFALDFKVINSAL 360
Query: 398 IVPPKLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDG-NHR 456
++ LA +L I+ + G + R I+F++ +V + + G N
Sbjct: 361 SPFKGSKIKALAQTLYAISNDDTEPGFEK---RCIIFVNEKKNVPEIVNLLNKKFGHNAI 417
Query: 457 GLVGDTARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTR------------TATLKH 504
GL G+ + I+P + P + + S S T LK+
Sbjct: 418 GLTGEDT-FEERSEKIMPFLS---PPRPLSEVVAQSTSPPTSLKKFEIPDSNIVIGKLKN 473
Query: 505 FATNNDATKGKHL-ILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTAR 558
+N A K L +L TD+ +RGL+ V V+ D P D +HR+GRTAR
Sbjct: 474 TNSNGTAPSNKSLHVLVTTDLMARGLNFKGVRNVVLYDVPKTSIDLIHRVGRTAR 528
>HsM7019399 [A] KOG0332 ATP-dependent RNA helicase
Length = 369
Score = 77.8 bits (190), Expect = 6e-14
Identities = 102/408 (25%), Positives = 166/408 (40%), Gaps = 92/408 (22%)
Query: 168 MKISKPTKIQKLVIPPFL-QAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGC 226
M ++P+KIQ++ +P L +L +Q+G+GKT AF+L + + +L + Q C
Sbjct: 1 MGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNAL--ELFPQCLC 58
Query: 227 FALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGAN----FIIG 282
A PT ELA Q +V ++ + C + I G R+ +G + IIG
Sbjct: 59 LA----PTYELALQTGRVVEQMGKFCVDVQVMYAIRGN-------RIPRGTDITKQIIIG 107
Query: 283 TPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMEL-GFEETLKEILNIIHGIDIDTHQ 341
TPG VLD K+I +R VLDE D +++ GF + H I I
Sbjct: 108 TPGTVLDWCFKLKLID---LTKIRVFVLDEADVMIDTQGFSD---------HSIRIQR-- 153
Query: 342 FPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPP 401
LP +L SAT + +V ++I+ P
Sbjct: 154 --ALPSECQMLLFSATFEDSVW---------------------------HFAERIIPDPN 184
Query: 402 KLRLVTLAGSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGD 461
++L +L I Q + + D + + + S ++ +F N + L
Sbjct: 185 VIKLRKEELTLNNIRQYYVLCEHRKDKYQALCNIYGSITIG-QAIIFCQTRRNAKWL--- 240
Query: 462 TARLLTKGNSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFC 521
T ++ G+ + L G L+ + R + + F GK +L
Sbjct: 241 TVEMIQDGHQV--------------SLLSGELTVEQRASITQRF------RDGKEKVLIT 280
Query: 522 TDVASRGLDLPHVSTVIEMDPPFA------VEDHLHRIGRTARAGCEG 563
T+V +RG+D+ V+ V+ D P E +LHRIGRT R G +G
Sbjct: 281 TNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKG 328
>CE29052 [A] KOG0335 ATP-dependent RNA helicase
Length = 1156
Score = 76.6 bits (187), Expect = 1e-13
Identities = 79/274 (28%), Positives = 127/274 (45%), Gaps = 33/274 (12%)
Query: 76 NSTSAQAPVEP-KRSRFDNSSNVEQPARVTQPLQLNSQIVSS---LFTSSRNI--DTVTN 129
N P EP +R + E P T+P L + S +FT + D V N
Sbjct: 656 NERVRMEPTEPCRRCAEEGHWGYECP---TRPKDLQGNFLESYDFVFTPDDKMFEDAVNN 712
Query: 130 SNAHDEKAEVTYSNAPL-VGD--TFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQ 186
+ D +V S + + D +FD F I + +MK+++PT IQ+ P +
Sbjct: 713 DDKIDFDQKVVASTGKVEIPDMASFDGFKILPQDLHDNLKRMKMNRPTPIQRASFFPIMH 772
Query: 187 AQNDLFIHAQTGSGKTLAFLLPIFQSIL---SLGQNIT-RQSGCFALVVTPTRELANQIY 242
ND+ A TGSGKTLAFL+P ++ +++T + L+V PTREL NQ +
Sbjct: 773 G-NDVVACAHTGSGKTLAFLIPFVIKLMEEFEKDRDVTDEKPSPRLLIVAPTRELVNQTF 831
Query: 243 ----QVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGA--NFIIGTPGRVLDHLQNTKV 296
Q+T E C L GG + + LR + N ++ T GR+ D + +V
Sbjct: 832 TTARQLTYETGLKCG-----LAFGGYSRNANVQHLRSFSQLNILVATMGRLQDFVNAGEV 886
Query: 297 IKEQLAPSLRYVVLDEGDKLMELG-FEETLKEIL 329
+ ++Y+VLDE D++++ F E + +I+
Sbjct: 887 SLSK----MKYIVLDEADRMVDSNDFGEEVSKII 916
>CE29051 [A] KOG0335 ATP-dependent RNA helicase
Length = 1016
Score = 75.5 bits (184), Expect = 3e-13
Identities = 77/274 (28%), Positives = 128/274 (46%), Gaps = 33/274 (12%)
Query: 76 NSTSAQAPVEP-KRSRFDNSSNVEQPARVTQPLQLNSQIVSS---LFTSSRNI--DTVTN 129
N P EP +R + E P T+P L + S +FT + D V N
Sbjct: 619 NERVRMEPTEPCRRCAEEGHWGYECP---TRPKDLQGNFLESYDFVFTPDDKMFEDAVNN 675
Query: 130 SNAHDEKAEVTYSNAPL-VGD--TFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQ 186
+ D +V S + + D +FD F + + +MK+++PT IQ+ P +
Sbjct: 676 DDKIDFDQKVVASTGKVEIPDMASFDGFKVLPQDLHDNLKRMKMNRPTPIQRASFFPIMH 735
Query: 187 AQNDLFIHAQTGSGKTLAFLLPIFQSIL---SLGQNIT-RQSGCFALVVTPTRELANQIY 242
+D+ A TGSGKTLAFL+P ++ +++T + L+V PTREL NQ +
Sbjct: 736 G-DDVVACAHTGSGKTLAFLIPFVIKLMEEFEKDRDVTDEKPSPRLLIVAPTRELVNQTF 794
Query: 243 ----QVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGA--NFIIGTPGRVLDHLQNTKV 296
Q+T E C L GG + + LR + N ++ T GR+ D + +V
Sbjct: 795 TTARQLTYETGLKCG-----LAFGGYSRNANVQHLRSFSQLNILVATMGRLQDFVNAGEV 849
Query: 297 IKEQLAPSLRYVVLDEGDKLME-LGFEETLKEIL 329
+ ++Y+VLDE D++++ + F E + +I+
Sbjct: 850 SLSK----MKYIVLDEADRMVDSIDFGEEVSKII 879
>CE26264 [A] KOG0335 ATP-dependent RNA helicase
Length = 328
Score = 73.2 bits (178), Expect = 1e-12
Identities = 72/264 (27%), Positives = 115/264 (43%), Gaps = 61/264 (23%)
Query: 306 RYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKL 365
RY+VLDE D+++++GFE +++I ++ ++ P +RI + SAT + L
Sbjct: 12 RYLVLDEADRMLDMGFEPQIRQI--------VECNRMPSKEERIT-AMFSATFPKEIQLL 62
Query: 366 GNVTL-QNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGS 424
L +NY ++ G+ + + ++QKIV V + L L +
Sbjct: 63 AQDFLKENYVFLAVGR----VGSTSENIMQKIVWVEEDEKRSYLMDLLD----------A 108
Query: 425 KSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNV 484
D + T+VF+ +G S L + + + V
Sbjct: 109 TGDSSLTLVFVETK-----------------------------RGASDLAYYLNRQNYEV 139
Query: 485 ICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPF 544
+ +HG L Q R L F T G IL T VA+RGLD+P+V VI D P
Sbjct: 140 VT--IHGDLKQFEREKHLDLFRT------GTAPILVATAVAARGLDIPNVKHVINYDLPS 191
Query: 545 AVEDHLHRIGRTARAGCEGESLLF 568
V++++HRIGRT R G G + F
Sbjct: 192 DVDEYVHRIGRTGRVGNVGLATSF 215
>SPBC776.09 [A] KOG0326 ATP-dependent RNA helicase
Length = 485
Score = 72.0 bits (175), Expect = 3e-12
Identities = 73/252 (28%), Positives = 117/252 (45%), Gaps = 21/252 (8%)
Query: 172 KPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVV 231
+P+ IQ+ IP L + D+ A+ G+GKT AF++P SL + T++S L++
Sbjct: 66 RPSPIQEESIPIALSGR-DILARAKNGTGKTAAFVIP------SLEKVDTKKSKIQTLIL 118
Query: 232 TPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLDHL 291
PTRELA Q QV L + + V + GG + + RL + ++GTPGRVLD L
Sbjct: 119 VPTRELALQTSQVCKTLGKHMNVKV-MVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLD-L 176
Query: 292 QNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNII---HGIDIDTHQFPKLPKR 348
V + V+DE DKL+ F ++++L+ I + + FP + K
Sbjct: 177 AGKGVADFSECTTF---VMDEADKLLSPEFTPIIEQLLSYFPKNRQISLYSATFPLIVKN 233
Query: 349 ILHVLCSATVKGNV---TKLGNVTLQNYKLISSGQKQTETTTVPD--QLLQKIVIVPPKL 403
+ + + N+ L VT Q Y + QK T+ Q+ Q I+
Sbjct: 234 FMDKHLNKPYEINLMDELTLRGVT-QYYAFVDESQKVHCLNTLFSKLQINQSIIFCNSTN 292
Query: 404 RLVTLAGSLTTI 415
R+ LA +T +
Sbjct: 293 RVELLAKKITEL 304
Score = 50.4 bits (119), Expect = 1e-05
Identities = 28/84 (33%), Positives = 42/84 (49%), Gaps = 6/84 (7%)
Query: 486 CYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFA 545
C+ H + Q R +F G L C+D+ +RG+D+ V+ VI D P
Sbjct: 308 CFYSHAKMLQSHRNRVFHNFRN------GVCRNLVCSDLLTRGIDIQAVNVVINFDFPKN 361
Query: 546 VEDHLHRIGRTARAGCEGESLLFL 569
E +LHRIGR+ R G G ++ F+
Sbjct: 362 AETYLHRIGRSGRFGHRGLAISFI 385
>CE03025 [A] KOG0329 ATP-dependent RNA helicase
Length = 425
Score = 70.1 bits (170), Expect = 1e-11
Identities = 89/400 (22%), Positives = 172/400 (42%), Gaps = 79/400 (19%)
Query: 173 PTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVT 232
P+++Q IP + D+ A++G GKT F++ Q + + ++ C
Sbjct: 64 PSEVQHECIPQAILGM-DVVCQAKSGMGKTAVFVITTLQQLEPVDGEVSVVCMCH----- 117
Query: 233 PTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGA-NFIIGTPGRVLDHL 291
TRELA QI + ++ + + GG K ++ RL + ++GTPGR+L
Sbjct: 118 -TRELAFQISKEYERFSKYLPGVKVAVFFGGMAIKKDEERLANDCPHIVVGTPGRMLALA 176
Query: 292 QNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRILH 351
++ K+ ++ ++Y VLDE DK+ +G + +++ I+ P++
Sbjct: 177 RSGKLKLDK----VKYFVLDECDKM--IGDADMRRDVQEIV----------KMTPQQKQV 220
Query: 352 VLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQ--KIVIVPPKLRLVTLA 409
++ SAT+ E TV + +Q V V + +L TL
Sbjct: 221 MMFSATL-----------------------PKELRTVCKRFMQDPMEVYVDDEAKL-TLH 256
Query: 410 GSLTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKG 469
G Q+HY + +++ R + L+ D+++F+ V + + +
Sbjct: 257 G-----LQQHYVKLKEAEKNRRL--LNLLDALEFNQVVI-------------FVKAVKRC 296
Query: 470 NSILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGL 529
++ + + P++ +H ++Q+ R L + D K IL TD+ RG+
Sbjct: 297 EALHQLLTEQNFPSI---AIHRQMAQEER---LSRYQAFKDFQK---RILVATDLFGRGM 347
Query: 530 DLPHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLFL 569
D+ V+ V D P + +LHR+ R R G +G ++ F+
Sbjct: 348 DIERVNIVFNYDMPEDSDSYLHRVARAGRFGTKGLAITFV 387
>YDL084w [A] KOG0329 ATP-dependent RNA helicase
Length = 446
Score = 69.7 bits (169), Expect = 2e-11
Identities = 106/451 (23%), Positives = 181/451 (39%), Gaps = 95/451 (21%)
Query: 142 SNAPLVGDTFDSF-GITDTMVSHLNVKMKISK---------PTKIQKLVIPPFLQAQNDL 191
+N GD S+ GI T +K ++S+ P+++Q+ IP + D+
Sbjct: 44 NNNTAAGDKKGSYVGIHSTGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHG-TDV 102
Query: 192 FIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQC 251
A++G GKT F+L Q + + + +V+ RELA YQ+ +E +
Sbjct: 103 LCQAKSGLGKTAVFVLSTLQQLDPVPGEVA------VVVICNARELA---YQIRNEYLRF 153
Query: 252 CHFL--VPCLLIGGERKKSEKARLRKGAN----FIIGTPGRVLDHLQNTKVIKEQLAPSL 305
++ V + G S+ A L K + ++ TPGR L L K I +
Sbjct: 154 SKYMPDVKTAVFYGGTPISKDAELLKNKDTAPHIVVATPGR-LKALVREKYID---LSHV 209
Query: 306 RYVVLDEGDKLME-LGFEETLKEILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTK 364
+ V+DE DK++E L ++EI F P+ ++ SAT+ +
Sbjct: 210 KNFVIDECDKVLEELDMRRDVQEI-------------FRATPRDKQVMMFSATLSQEIRP 256
Query: 365 LGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGSLTTITQKHYKEGS 424
+ LQN L+ V KL L L Q++Y +
Sbjct: 257 ICRRFLQNP-------------------LEIFVDDEAKLTLHGL--------QQYYIKLE 289
Query: 425 KSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNSILPCFNDTDDPNV 484
+ + R + L D ++F+ + + T+ N + N ++ P +
Sbjct: 290 EREKNRKLAQLL--DDLEFNQVIIF-------------VKSTTRANELTKLLNASNFPAI 334
Query: 485 ICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPF 544
+HG + Q+ R A K F D K I TDV RG+D+ ++ I D
Sbjct: 335 T---VHGHMKQEERIARYKAF---KDFEKR---ICVSTDVFGRGIDIERINLAINYDLTN 385
Query: 545 AVEDHLHRIGRTARAGCEGESLLFLLPGEEE 575
+ +LHR+GR R G +G ++ F+ E+E
Sbjct: 386 EADQYLHRVGRAGRFGTKGLAISFVSSKEDE 416
>Hs22070384 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 447
Score = 65.5 bits (158), Expect = 3e-10
Identities = 41/130 (31%), Positives = 67/130 (51%), Gaps = 16/130 (12%)
Query: 261 IGGERKKSEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELG 320
+GG + +E +L G N I+ T GR+LDH+QNT + +L+ +V+DE D+++++G
Sbjct: 1 MGGSNRSAEAWKLANGINIIVATSGRLLDHMQNTPGF---MYKNLQCLVIDEADRILDVG 57
Query: 321 FEETLKEILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISSGQ 380
FEE LK+I+ ++ TH+ +L SAT V L ++L+ L
Sbjct: 58 FEEELKQIIKLLL-----THR--------QTMLFSATQTQKVEDLARISLKKEPLYVGDD 104
Query: 381 KQTETTTVPD 390
TV D
Sbjct: 105 DDNANETVAD 114
>ECU05g1270 [A] KOG0331 ATP-dependent RNA helicase
Length = 426
Score = 63.9 bits (154), Expect = 8e-10
Identities = 44/146 (30%), Positives = 80/146 (54%), Gaps = 17/146 (11%)
Query: 173 PTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVT 232
PT +Q+ VIP ++ A + + ++TGSGKTL+++LP + S + + LV+
Sbjct: 79 PTDVQRFVIP-YILAGEGVDVISETGSGKTLSYVLPHIHLLESGDKRL--------LVIV 129
Query: 233 PTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLDHLQ 292
PTREL +Q+ QV + ++ +V + G +S++ ++ + + I TPGR+ + L+
Sbjct: 130 PTRELVSQVGQVFRKFSEGLLRIVE--ITGEVSIESQRLQVSRPFDVAISTPGRLRELLE 187
Query: 293 NTKVIKEQLAPSLRYVVLDEGDKLME 318
+ YVV+DE D+LM+
Sbjct: 188 LKSI------GGFEYVVVDEADRLMQ 207
>7296990 [A] KOG0329 ATP-dependent RNA helicase
Length = 424
Score = 63.5 bits (153), Expect = 1e-09
Identities = 54/213 (25%), Positives = 96/213 (44%), Gaps = 13/213 (6%)
Query: 118 FTSSRNIDTVTNSNAHDEKAEVTYSNAPLVGDTFDSFGITDTMVSHLNVKMKISKPTKIQ 177
+ +T N K +V + + F F + ++ + V P+++Q
Sbjct: 10 YEDEEQTETTAVENQEAPKKDVKGTYVSIHSSGFRDFLLKPEILRAI-VDCGFEHPSEVQ 68
Query: 178 KLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVTPTREL 237
IP + D+ A++G GKT F+L Q + N C LV+ TREL
Sbjct: 69 HECIPQAVLGM-DILCQAKSGMGKTAVFVLATLQQLEPSDNNT-----CHVLVMCHTREL 122
Query: 238 ANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGA-NFIIGTPGRVLDHLQNTKV 296
A QI + ++ + + GG + ++ L+ G + ++GTPGR+L ++N K+
Sbjct: 123 AFQISKEYERFSKYMPTVKVAVFFGGMAIQKDEETLKSGTPHIVVGTPGRILALIRNKKL 182
Query: 297 IKEQLAPSLRYVVLDEGDKLME-LGFEETLKEI 328
+ L++ VLDE DK++E L ++EI
Sbjct: 183 NLK----LLKHFVLDECDKMLEQLDMRRDVQEI 211
>Hs21040373 [A] KOG0329 ATP-dependent RNA helicase
Length = 316
Score = 59.7 bits (143), Expect = 2e-08
Identities = 46/161 (28%), Positives = 81/161 (49%), Gaps = 13/161 (8%)
Query: 173 PTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVT 232
P+++Q IP + D+ A++G GKT F+L Q I + +T LV+
Sbjct: 67 PSEVQHECIPQAILGM-DVLCQAKSGMGKTAVFVLATLQQIEPVNGQVT------VLVMC 119
Query: 233 PTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGA-NFIIGTPGRVLDHL 291
TRELA QI + ++ + + GG K ++ L+K + ++GTPGR+L +
Sbjct: 120 HTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALV 179
Query: 292 QNTKVIKEQLAPSLRYVVLDEGDKLME-LGFEETLKEILNI 331
+N + ++++ VLDE DK++E L ++EI +
Sbjct: 180 RN----RSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRL 216
>Hs21040371 [A] KOG0329 ATP-dependent RNA helicase
Length = 427
Score = 59.7 bits (143), Expect = 2e-08
Identities = 46/161 (28%), Positives = 81/161 (49%), Gaps = 13/161 (8%)
Query: 173 PTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVT 232
P+++Q IP + D+ A++G GKT F+L Q I + +T LV+
Sbjct: 67 PSEVQHECIPQAILGM-DVLCQAKSGMGKTAVFVLATLQQIEPVNGQVT------VLVMC 119
Query: 233 PTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGA-NFIIGTPGRVLDHL 291
TRELA QI + ++ + + GG K ++ L+K + ++GTPGR+L +
Sbjct: 120 HTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALV 179
Query: 292 QNTKVIKEQLAPSLRYVVLDEGDKLME-LGFEETLKEILNI 331
+N + ++++ VLDE DK++E L ++EI +
Sbjct: 180 RN----RSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRL 216
>CE27336 [A] KOG0334 RNA helicase
Length = 436
Score = 59.3 bits (142), Expect = 2e-08
Identities = 36/98 (36%), Positives = 54/98 (54%), Gaps = 2/98 (2%)
Query: 225 GCFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTP 284
G A+++TPTRELA Q Y+ ++ A+ V C GG + A L++GA ++ TP
Sbjct: 116 GPIAVILTPTRELAMQTYKEANKFAKPLGLKVAC-TYGGVGISEQIADLKRGAEIVVCTP 174
Query: 285 GRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFE 322
GR++D L L + Y+VLDE D++ GFE
Sbjct: 175 GRMIDVLAANSGKVTNLR-RVTYLVLDEADRMFHKGFE 211
Score = 55.8 bits (133), Expect = 2e-07
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 489 LHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVED 548
LHG + Q R +++ F T G +L T VA+RGLD+ ++ V+ D P ED
Sbjct: 281 LHGGIDQHDRDSSIADFKT------GVIKVLVATSVAARGLDVKNLILVVNYDCPNHYED 334
Query: 549 HLHRIGRTARAG 560
++HR+GRT RAG
Sbjct: 335 YVHRVGRTGRAG 346
>ECU07g1060 [A] KOG0344 ATP-dependent RNA helicase
Length = 416
Score = 58.9 bits (141), Expect = 3e-08
Identities = 54/194 (27%), Positives = 88/194 (44%), Gaps = 35/194 (18%)
Query: 164 LNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQ 223
L K+ P QK+VIP FL+ N + + A TGSGKTL++ LP+ + + R
Sbjct: 39 LKTKVPFDSPLLTQKVVIPYFLKKTN-VIVQAFTGSGKTLSYCLPLVE--------MARG 89
Query: 224 SGCFALVVTPTRELANQIYQVTSELAQCCHFLV--------PCLLIGGERKK------SE 269
F ++ P + L Q+Y+V E+ +V L+ GE+ + +
Sbjct: 90 RSLFGAILVPGKPLVRQVYRVVREIKHEGLKVVGVYGDGREDFLVEEGEKGELVQKAIDD 149
Query: 270 KAR------LRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEE 323
K R LR A +IGTP VL + +++ ++ ++V+DE D L+
Sbjct: 150 KMRERIAESLRASARVLIGTPRSVLGLMSMSEI------RNVTHLVIDEADLLINPETVG 203
Query: 324 TLKEILNIIHGIDI 337
IL++I DI
Sbjct: 204 VFASILSVIEMEDI 217
>At4g00660 [A] KOG0326 ATP-dependent RNA helicase
Length = 499
Score = 58.9 bits (141), Expect = 3e-08
Identities = 46/186 (24%), Positives = 90/186 (47%), Gaps = 21/186 (11%)
Query: 148 GDTFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLL 207
G+ F+ + + ++ + K +P+ IQ+ IP L + D+ A+ G+GKT AF +
Sbjct: 130 GNEFEDYFLKRELLMGIYEK-GFERPSPIQEESIPIALTGR-DILARAKNGTGKTAAFCI 187
Query: 208 PIFQSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSELAQCCHFLVPCLLI-GGERK 266
P+ + I N Q C + + QV EL + H + ++ GG
Sbjct: 188 PVLEKIDQ--DNNVIQGNC----------VLDHTSQVCKELGK--HLKIQVMVTTGGTSL 233
Query: 267 KSEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLK 326
K + RL + + ++GTPGR+LD + + + + +V+DE DKL+ F+ +++
Sbjct: 234 KDDIMRLYQPVHLLVGTPGRILDLTKKGVCVLKDCS----VLVMDEADKLLSQEFQPSVE 289
Query: 327 EILNII 332
+++ +
Sbjct: 290 HLISFL 295
>Hs22045464 [A] KOG0343 RNA Helicase
Length = 597
Score = 58.5 bits (140), Expect = 4e-08
Identities = 28/73 (38%), Positives = 44/73 (59%)
Query: 502 LKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDHLHRIGRTARAGC 561
++ N+ + + +LF +DVA+RGLD P V+ ++ D P ++HR GRTAR
Sbjct: 219 MRRMEVYNEFVRKRAAVLFASDVAARGLDFPAVNWALQFDCPEDANTYIHRAGRTARYKE 278
Query: 562 EGESLLFLLPGEE 574
+GE+LL LL E+
Sbjct: 279 DGEALLILLASEK 291
Score = 51.6 bits (122), Expect = 4e-06
Identities = 36/126 (28%), Positives = 63/126 (49%), Gaps = 17/126 (13%)
Query: 259 LLIGGERKKSEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLME 318
L+IGG+ K E R+ N ++ PGR+L H+ T A +L +VLDE ++++
Sbjct: 115 LIIGGKYLKHEAERINN-INILVCAPGRLLQHMDETVSFH---ATALLMLVLDEAYRILD 170
Query: 319 LGFEETLKEILNIIHGIDIDTHQFPKLPKRILHVLCSATVKGNVTKLGNVTLQNYKLISS 378
+GF +T+ I+ LPK+ +L SAT +V L ++L+N + +
Sbjct: 171 VGFADTMNAIIE-------------NLPKKRQTLLFSATQTISVKDLARLSLKNTEYVWQ 217
Query: 379 GQKQTE 384
++ E
Sbjct: 218 QMRRME 223
>CE28485 [K] KOG4284 DEAD box protein
Length = 963
Score = 58.2 bits (139), Expect = 5e-08
Identities = 42/143 (29%), Positives = 74/143 (51%), Gaps = 13/143 (9%)
Query: 189 NDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVTPTRELANQIYQVTSEL 248
+D+ + A++G+GKTL F S+L++ +R S ++VTPTRE++ QI + ++
Sbjct: 50 SDMLVQAKSGTGKTLVF------SVLAVENLDSRSSHIQKVIVTPTREISVQIKETVRKV 103
Query: 249 AQCCHFLVPCLLIGGERKKSEKARLRK-GANFIIGTPGRVLDHLQNTKVIKEQLAPSLRY 307
A + +GG K L++ +IGTPGR+ ++ + + +
Sbjct: 104 APT--GARTSVYVGGSAHKLNLIDLKQTRPQIVIGTPGRIAQLVK----LGAMNMSHVDF 157
Query: 308 VVLDEGDKLMELGFEETLKEILN 330
VLDE DKLM+ F + + I+N
Sbjct: 158 FVLDEADKLMDEVFRDDINIIIN 180
>CE01338 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 363
Score = 58.2 bits (139), Expect = 5e-08
Identities = 83/397 (20%), Positives = 158/397 (38%), Gaps = 85/397 (21%)
Query: 172 KPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVV 231
KP+ IQK + P + D+ I +Q GSGKT+ L+ I Q I ++ +++
Sbjct: 18 KPSAIQKSAVAPCTTGK-DVTIQSQAGSGKTVISLIDILQGIDCEDAHLQ------VILL 70
Query: 232 TPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLDHL 291
P R +A + ++ L + + CL G +E ++ ++ ++GTP L ++
Sbjct: 71 APQRGMAQRAHEQLKSLGRNLNVNATCL---GFDTTAENDKI---SHVLMGTPKDFLSNI 124
Query: 292 QNTKVIKEQLAPSLRYVVLDEGDKLMELGFEETLKEILNIIHGIDIDTHQFPKLPKRILH 351
+ ++ VLDE D+++ GF++ + E+ F +P+ +
Sbjct: 125 PSD-------TSRIKMFVLDEADEMLSKGFKDQIYEV-------------FRSMPQDVQV 164
Query: 352 VLCSATVKGNVTKLGNVTLQNYKLISSGQKQTETTTVPDQLLQKIVIVPPKLRLVTLAGS 411
VL SAT+ V + N ++ D + +I++ +L L +
Sbjct: 165 VLLSATMPSEVLDVTNRFMR------------------DPI--RILVKKDELTLEGIRQF 204
Query: 412 LTTITQKHYKEGSKSDVTRTIVFLSCSDSVDFHYEVFSSHDGNHRGLVGDTARLLTKGNS 471
+ + +K D+ +T S + +F N R V L
Sbjct: 205 YINVQKDEWKFNCLCDLLKT--------SRETQALIFC----NTRRRVTQLTEQLMSIPI 252
Query: 472 ILPCFNDTDDPNVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDL 531
+ CF HG++ R +K F + N +L TD+ +RG+++
Sbjct: 253 KVSCF-------------HGNMEHNEREDMVKDFNSRNTR------VLVTTDLMARGMNI 293
Query: 532 PHVSTVIEMDPPFAVEDHLHRIGRTARAGCEGESLLF 568
S +I D +E+++ R GR G +G + F
Sbjct: 294 -RKSLIINYDVSGNMENYMLRNGRQGNFGSKGLPISF 329
>CE27320 [A] KOG0335 ATP-dependent RNA helicase
Length = 463
Score = 57.8 bits (138), Expect = 6e-08
Identities = 50/152 (32%), Positives = 67/152 (43%), Gaps = 32/152 (21%)
Query: 121 SRNIDTVTNSNAHDEKAEVTYSNAPLVGDTFDSFGITDTMVSHLNVKMKIS--------- 171
SR N A DE+ E + L G FD + + +V IS
Sbjct: 313 SRGTSKWENRGARDERIEQELFSGQLSGINFDKYEEIPVEATGDDVPQPISLFSDLSLHE 372
Query: 172 ------------KPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLG-- 217
+PT +QK IP LQ DL AQTGSGKT AFL+P+ +IL G
Sbjct: 373 WIEENIKTAGYDRPTPVQKYSIPA-LQGGRDLMSCAQTGSGKTAAFLVPLVNAILQDGPD 431
Query: 218 ---QNITRQSG-----CFALVVTPTRELANQI 241
+++T G ALV++PTREL+ Q+
Sbjct: 432 AVHRSVTSSGGRKKQYPSALVLSPTRELSLQV 463
>At1g59990 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 581
Score = 57.4 bits (137), Expect = 8e-08
Identities = 32/81 (39%), Positives = 43/81 (52%), Gaps = 7/81 (8%)
Query: 483 NVICYKLHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDP 542
++ CY+ H + R L F + CTD A+RG+D+P+VS VI+ D
Sbjct: 448 SIQCYRYHKNHKLDERANILADFRETGG-------VFVCTDAAARGVDVPNVSHVIQADF 500
Query: 543 PFAVEDHLHRIGRTARAGCEG 563
+ D LHRIGRTARAG G
Sbjct: 501 ASSAVDFLHRIGRTARAGQYG 521
Score = 52.0 bits (123), Expect = 3e-06
Identities = 49/207 (23%), Positives = 100/207 (47%), Gaps = 19/207 (9%)
Query: 150 TFDSFGITDTMVSHLNVKMKISKPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPI 209
++ S G++D + L +P+ Q + IP L + D+ + A+TGSGKT +L PI
Sbjct: 81 SWKSLGLSDNVSIALR-DSGFDRPSLTQAVCIPSILSGK-DVIVAAETGSGKTHGYLAPI 138
Query: 210 FQSILS--LGQNIT-RQSGCF-----ALVVTPTRELANQIYQVTSELA-QCCHFLVPCLL 260
+ + L +T R+ F +L++ P L Q+ ++ + L + + L+
Sbjct: 139 IDQLTNTALDSEVTNREERPFPLKNISLILCPNVMLCEQVVRMVNGLVDEDGNPLLRVEA 198
Query: 261 IGGERKKSEKARLRKGANFIIGTPGRVLDHLQNTKVIKEQLAPSLRYVVLDEGDKLMELG 320
+ G + ++ + I+ TP +L++++ + + + ++YVV DE D L+
Sbjct: 199 VCGSQGWPDRL-----PDIIVSTPAALLNNIEPKRNRRLEFLRCVKYVVFDEADMLLCGS 253
Query: 321 FEETLKEILNIIHGIDIDTHQFPKLPK 347
F+ +I+ +I+ + D Q +L K
Sbjct: 254 FQ---NQIIRLINMLRFDEKQVSRLAK 277
>Hs4758112 [A] KOG0329 ATP-dependent RNA helicase
Length = 428
Score = 56.6 bits (135), Expect = 1e-07
Identities = 46/161 (28%), Positives = 80/161 (49%), Gaps = 13/161 (8%)
Query: 173 PTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVT 232
P+++Q IP + D+ A++G GKT F+L Q + + +T Q LV+
Sbjct: 68 PSEVQHECIPQAILGM-DVLCQAKSGMGKTAVFVLATLQQL----EPVTGQVS--VLVMC 120
Query: 233 PTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGA-NFIIGTPGRVLDHL 291
TRELA QI + ++ + + GG K ++ L+K + ++GTPGR+L
Sbjct: 121 HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA 180
Query: 292 QNTKVIKEQLAPSLRYVVLDEGDKLME-LGFEETLKEILNI 331
+N K +++ +LDE DK++E L ++EI +
Sbjct: 181 RN----KSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRM 217
>Hs22044561 [A] KOG0331 ATP-dependent RNA helicase
Length = 964
Score = 53.9 bits (128), Expect = 9e-07
Identities = 35/87 (40%), Positives = 48/87 (54%), Gaps = 7/87 (8%)
Query: 489 LHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVED 548
LHG ++Q R TLK F D+ K +L T+VA+ L +P V VI+ PP VE
Sbjct: 595 LHGDIAQSQREITLKGF--REDSFK----VLVATNVAAHSLHIPEVDLVIQHSPPQDVEA 648
Query: 549 HLHRIGRTARAGCEGESLLFLLPGEEE 575
+HR G T RAG +G +F+ +EE
Sbjct: 649 RIHRSGCTGRAG-QGFVYVFINQEKEE 674
>Hs17474878 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 645
Score = 53.5 bits (127), Expect = 1e-06
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 489 LHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVED 548
LHG Q+ R FA +N G +L TDVA G+D+ VS V+ D ++D
Sbjct: 519 LHGGKGQEQR-----EFALSN-LKPGAKDVLVTTDVAGHGIDIQDVSMVVNYDMAKNIDD 572
Query: 549 HLHRIGRTARAGCEGESLLFL 569
++HRIGR +AG G ++ FL
Sbjct: 573 YIHRIGRMGQAGKSGVAITFL 593
>Hs4826688 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 439
Score = 53.1 bits (126), Expect = 1e-06
Identities = 48/145 (33%), Positives = 67/145 (46%), Gaps = 13/145 (8%)
Query: 174 TKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVVTP 233
T IQ V Q N +F A TG+GKTLAFLLPI I + L++ P
Sbjct: 19 TPIQAAVWEKLAQGDN-IFGLAPTGTGKTLAFLLPILSRI------DPKVKQTQVLILAP 71
Query: 234 TRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKG-ANFIIGTPGRVLDHLQ 292
++ELA Q V E V LIGG + + +L+K + ++GT GRVL L
Sbjct: 72 SQELAMQTTAVAREWGALVDVSVTS-LIGGANGRRQADKLKKDKPHIVVGTLGRVLTMLD 130
Query: 293 NTKVIKEQLAPSLRYVVLDEGDKLM 317
+ L+ V+ DE D ++
Sbjct: 131 GGAL----KLNGLQTVIFDEADAML 151
>Hs17475661 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 240
Score = 52.8 bits (125), Expect = 2e-06
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 489 LHGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVED 548
+HG + Q+ R ++ + + G +L TD+ RG+D+ +S VI DPP E+
Sbjct: 159 MHGDMDQKERDVVMREYRS------GSSRVLITTDLLPRGIDVQQLSLVINYDPPTNREN 212
Query: 549 HLHRIGRTARAGCEGESL 566
++HRIGR + G +G ++
Sbjct: 213 YIHRIGRGGQFGHKGVAI 230
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.317 0.134 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,535,427
Number of Sequences: 60738
Number of extensions: 1883693
Number of successful extensions: 6582
Number of sequences better than 1.0e-05: 229
Number of HSP's better than 0.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 80
Number of HSP's that attempted gapping in prelim test: 5516
Number of HSP's gapped (non-prelim): 472
length of query: 740
length of database: 30,389,216
effective HSP length: 114
effective length of query: 626
effective length of database: 23,465,084
effective search space: 14689142584
effective search space used: 14689142584
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)