ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI3707 good K KOG2354 Transcription RNA Polymerase C (III) 37 kDa subunit
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI3707 1292876 1293631 252
(252 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YKR025w [K] KOG2354 RNA Polymerase C (III) 37 kDa subunit 196 3e-50
SPCC330.13 [K] KOG2354 RNA Polymerase C (III) 37 kDa subunit 63 3e-10
At5g49530 [K] KOG2354 RNA Polymerase C (III) 37 kDa subunit 55 9e-08
Hs8922477 [K] KOG2354 RNA Polymerase C (III) 37 kDa subunit 49 7e-06
>YKR025w [K] KOG2354 RNA Polymerase C (III) 37 kDa subunit
Length = 282
Score = 196 bits (498), Expect = 3e-50
Identities = 105/253 (41%), Positives = 150/253 (58%), Gaps = 13/253 (5%)
Query: 7 VTDEDGDTEMNGNGKLDKKLQSSEIL--------KEDDPVVNEIPINLTVGPCPLHVLQF 58
+ DE+G N + +K S E+ +EDDPV+ E P+ ++ LHV Q+
Sbjct: 34 IADENGTNSAIANEQEEK---SEEVKAEDDTGEEEEDDPVIEEFPLKISGEEESLHVFQY 90
Query: 59 PNKPKRLAKNMDEHPPIAGVRYKDESSVWEIDIPLNTQVFFDKEKAAESWNNVDVQTLKG 118
N+P+ + + EHP I+ RYK +S +WEIDIPL+ Q F++K+KA WN V+VQTLKG
Sbjct: 91 ANRPRLVGRKPAEHPFISAARYKPKSHLWEIDIPLDEQAFYNKDKAESEWNGVNVQTLKG 150
Query: 119 VAVSNDMLQYAGVMKQGQLYLIPVEKVAQMRPYFRYIDSHQQVKKDEDXXXXXXXXXXXX 178
V V N+ QYA +K Q+YL+P+E+VAQ++P+F+YID +K ED
Sbjct: 151 VGVENNG-QYAAFVKDMQVYLVPIERVAQLKPFFKYIDDANVTRKQED-ARRNPNPSSQR 208
Query: 179 XQVITMSVKSSSEANQNRLGGALLAHKVADEEEFKPLEWKDDTFESFVEEVTSEKSTVPL 238
QV+TMSVKS ++ +QNRL G+LLAHKVADEE L W + TFE F + + E L
Sbjct: 209 AQVVTMSVKSVNDPSQNRLTGSLLAHKVADEEANIELTWAEGTFEQFKDTIVKEAEDKTL 268
Query: 239 KPMDNDAVYLSKL 251
++ Y+ L
Sbjct: 269 VALEKQEDYIDNL 281
>SPCC330.13 [K] KOG2354 RNA Polymerase C (III) 37 kDa subunit
Length = 242
Score = 63.2 bits (152), Expect = 3e-10
Identities = 42/146 (28%), Positives = 78/146 (52%), Gaps = 7/146 (4%)
Query: 23 DKKLQSSEILKEDDPVVNEIPINLTVG-PCPLHVLQFPNKPK-RLAKNMDEHPPIAGVRY 80
+ KL++ E +E DPVV P+ + G L + QFP +PK R + + PI VR
Sbjct: 11 EAKLRNDET-EEQDPVVRTYPVFFSPGLRNNLLLNQFPLRPKNRTYSDANGEAPI-DVRV 68
Query: 81 KDESSVWEIDIPLNTQVFFDKEKAAESWNN---VDVQTLKGVAVSNDMLQYAGVMKQGQL 137
K ++ E+D+P+ T +++++KA + N + QTL G G+++ GQ
Sbjct: 69 KPKTGWMEVDVPIPTTKYYNEDKAMKYGNGKKPIQTQTLSGRLQKPRTNLMVGLIRDGQF 128
Query: 138 YLIPVEKVAQMRPYFRYIDSHQQVKK 163
+++P+ + Q+RP ++++ + Q K
Sbjct: 129 HIVPLRGLTQLRPSMKHVNEYTQKLK 154
>At5g49530 [K] KOG2354 RNA Polymerase C (III) 37 kDa subunit
Length = 689
Score = 55.1 bits (131), Expect = 9e-08
Identities = 48/154 (31%), Positives = 73/154 (47%), Gaps = 9/154 (5%)
Query: 16 MNGNGKLDKKLQSSEILKEDDPVVNEIPINLTVG---PCPLHVLQFPNKPKRLAKNMDEH 72
M + +L + + E +EDD VV EI + L+VLQ+P +P MDE
Sbjct: 96 MEEDQQLPLQEEKEEEEEEDDVVVREIDVFFKPSIDANTQLYVLQYPLRPSWRPYEMDER 155
Query: 73 PPIAGVRYKDESSVWEIDIPLNTQVFFDKEKAAESWNNVDVQTLKGVAVSNDMLQYA-GV 131
VR +S EID+ ++ K + N+ QTLK L YA GV
Sbjct: 156 --CEEVRVNPSTSQVEIDLSMDVH---SKNYDSNFGLNMTKQTLKTTWKQPPTLDYAVGV 210
Query: 132 MKQGQLYLIPVEKVAQMRPYFRYIDSHQQVKKDE 165
+ +L+L PV VAQ+RP + + S ++ K++E
Sbjct: 211 LSGDKLHLNPVHAVAQLRPSMQSLSSDKKKKQEE 244
>Hs8922477 [K] KOG2354 RNA Polymerase C (III) 37 kDa subunit
Length = 708
Score = 48.9 bits (115), Expect = 7e-06
Identities = 48/209 (22%), Positives = 84/209 (39%), Gaps = 26/209 (12%)
Query: 33 KEDDPVVNEIPINLTVGPCP-LHVLQFPNKPKRLAKNMDEHPPI-AGVRYKDESSVWEI- 89
+EDDPVV EI + L L++ Q+P +P + D+ P + A ++ K + E+
Sbjct: 4 EEDDPVVQEIDVYLAKSLAEKLYLFQYPVRPASMT--YDDIPHLSAKIKPKQQKVELEMA 61
Query: 90 --------------DIPLNTQVFFDKEKAAESWNNVDVQTLKGVAVSNDMLQYAGVM-KQ 134
I LN E + S +D QT +++ +YA + +Q
Sbjct: 62 IDTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTSRYAAALYRQ 121
Query: 135 GQLYLIPVEKVAQMRPYFRYIDSHQQVKKDEDXXXXXXXXXXXXXQ------VITMSVKS 188
G+L+L P+ + Q+RP F Y+D ++ + + + S
Sbjct: 122 GELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEDDVKQITVRFSRPE 181
Query: 189 SSEANQNRLGGALLAHKVADEEEFKPLEW 217
S +A Q R+ K EE + L +
Sbjct: 182 SEQARQRRVQSYEFLQKKHAEEPWVHLHY 210
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.312 0.132 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,058,524
Number of Sequences: 60738
Number of extensions: 619465
Number of successful extensions: 1190
Number of sequences better than 1.0e-05: 4
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1184
Number of HSP's gapped (non-prelim): 4
length of query: 252
length of database: 30,389,216
effective HSP length: 104
effective length of query: 148
effective length of database: 24,072,464
effective search space: 3562724672
effective search space used: 3562724672
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)