ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI3842 good L KOG2179 Replication, recombination and repair Nucleotide excision repair complex XPC-HR23B, subunit XPC/DPB11
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI3842 1341764 1344064 767
(767 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YER162c [L] KOG2179 Nucleotide excision repair complex XPC-HR23B... 520 e-147
SPAC12B10.12c [L] KOG2179 Nucleotide excision repair complex XPC... 204 3e-52
SPCC4G3.10c [L] KOG2179 Nucleotide excision repair complex XPC-H... 181 4e-45
Hs20127460 [L] KOG2179 Nucleotide excision repair complex XPC-HR... 121 5e-27
7303083 [L] KOG2179 Nucleotide excision repair complex XPC-HR23B... 120 6e-27
CE25606 [L] KOG2179 Nucleotide excision repair complex XPC-HR23B... 102 3e-21
At5g16630 [L] KOG2179 Nucleotide excision repair complex XPC-HR2... 88 6e-17
YDR314c [L] KOG2179 Nucleotide excision repair complex XPC-HR23B... 72 2e-12
>YER162c [L] KOG2179 Nucleotide excision repair complex XPC-HR23B subunit
XPC/DPB11
Length = 754
Score = 520 bits (1338), Expect = e-147
Identities = 277/638 (43%), Positives = 391/638 (60%), Gaps = 31/638 (4%)
Query: 130 RKTCHMFMLLTLVCHSYQRNEWCNDEKLQKKLAKLVSDDIFNNLHPQKDDEMPLRSTRKL 189
RK HM L+ L+ H + RNEW N ++L +KL+ LV + +F LHPQKD+E+PLRSTRKL
Sbjct: 140 RKYFHMLYLVCLMVHGFIRNEWINSKRLSRKLSNLVPEKVFELLHPQKDEELPLRSTRKL 199
Query: 190 LDALRMLMKHWNKKFKLELTSPYEFNHLYMVHWDSVL-----KHKCESVXXXXXXXXXXR 244
LD L+ M+ W K +K+ T Y+ LYM W + K K +++ +
Sbjct: 200 LDGLKKCMELWQKHWKI--TKKYDNEGLYMRTWKEIEMSANNKRKFKTLKRSDFLRAVSK 257
Query: 245 MRGPANISVQGFVTMLRGCGLNARLIHSLQPPDFTDSKIYNKRVVWSLENECLKYPIFWC 304
G +ISVQGFV MLR C +NARLI S QPPDFT+ KI + + +KYPIFWC
Sbjct: 258 GHGDPDISVQGFVAMLRACNVNARLIMSCQPPDFTNMKIDTSLNGNNAYKDMVKYPIFWC 317
Query: 305 EVWDKFAKQWITIDIVGQEIIEQVRYKSKLEPIGRINSAFNMMRYVIAFDRKQGCKDVSR 364
EVWDKF+K+WIT+D V + IEQVR SKL P G NM+RYVIA+DRK GC+DV+R
Sbjct: 318 EVWDKFSKKWITVDPVNLKTIEQVRLHSKLAPKGVACCERNMLRYVIAYDRKYGCRDVTR 377
Query: 365 RYIAHLQNKVRKKRITREAKLNEWFNSIIKFLNKRNRNRIDDYEDEYFDLRNEHEGIPDS 424
RY + +KVRK+RIT++ +WF +I L+ R R +IDDYED+YF R+E EGIPDS
Sbjct: 378 RYAQWMNSKVRKRRITKDDFGEKWFRKVITALHHRKRTKIDDYEDQYFFQRDESEGIPDS 437
Query: 425 LQDIKNHPFYVLEKDLRANQVLKPGAQQCGFLRLRNKSNSLLKVFPRKDVISCYSARHWY 484
+QD+KNHP+YVLE+D++ Q++KPG ++CG+L++ K +LKV+ ++D+ SAR WY
Sbjct: 438 VQDLKNHPYYVLEQDIKQTQIVKPGCKECGYLKVHGKVGKVLKVYAKRDIADLKSARQWY 497
Query: 485 MQGRALKSGA--KHLLTHKIKNPV-EEDEDEERLYPIGQTEYVIPKQVDADGKIPTNFYG 541
M GR LK+G+ K ++ + P E +E++ERLY TE IP A G+I N +G
Sbjct: 498 MNGRILKTGSRCKKVIKRTVGRPKGEAEEEDERLYSFEDTELYIPPLASASGEITKNTFG 557
Query: 542 NIDIYKPWMIPIGCCLVENPNSIKAASFLRVPFAKAVTGFKFESGRRVKPKVTGVVVENE 601
NI+++ P MIP CCLVENP +IKAA FL V FA AVT FKFE G VKP ++G+VV
Sbjct: 558 NIEVFAPTMIPGNCCLVENPVAIKAARFLGVEFAPAVTSFKFERGSTVKPVLSGIVVAKW 617
Query: 602 YVDALVAVIENIEECNDDAARHELELEALNGWSLLLTKLRIKSRLVEEHGAVADEDGRDY 661
+A+ I+ IE +D R E L AL W+ LL KLRI+S+L +G +A+E+
Sbjct: 618 LREAIETAIDGIEFIQEDDNRKEHLLGALESWNTLLLKLRIRSKLNSTYGKIAEEEPNVT 677
Query: 662 SGERDSDLEDHESYTGEDTEMGGFEQGGFLLDSNMDGGFVPEPELQHAESETEQVEHPPV 721
+ +D D+ ++ M GGF+P A +E E P
Sbjct: 678 KEQNIADNHDN-------------------TETFMGGGFLPGIANHEARPYSEPSE-PED 717
Query: 722 TYGEATLDRAEPSNTEPNEIADEFEQFLQEVGSQSDDD 759
+ ++D+AE S T+ +++ +++ F++E+ + D
Sbjct: 718 SLDYVSVDKAEESATD-DDVGEDYSDFMKELEMSEESD 754
>SPAC12B10.12c [L] KOG2179 Nucleotide excision repair complex XPC-HR23B subunit
XPC/DPB11
Length = 638
Score = 204 bits (520), Expect = 3e-52
Identities = 175/608 (28%), Positives = 269/608 (43%), Gaps = 79/608 (12%)
Query: 97 GNISITIDTSAQXXXXXXXXXXEHGLDPAVKEFRKTCHMFMLLTLVCHSYQRNEWCNDEK 156
G++ T+D + + + ++ R H LL L H RN WC+D +
Sbjct: 57 GDVEATVDRTVEKRSRLKITSVD-------RKIRLQIHQLHLLCLTYHLCTRNTWCDDNR 109
Query: 157 LQKKLAKLVSDDIFNNLHPQKDDEMPLRSTRKLLDALRMLMKHWNKKFKLELTSPYEFNH 216
L L K + I +LHP +R+ + L L L++ W +K+K+ + N+
Sbjct: 110 L-NYLVKYIPPGIRVSLHPSSQKSQMIRN-KTFLHGLAGLVEVWKRKYKITTNGLRKPNY 167
Query: 217 LYMVHWDSVLKHKCESVXXXXXXXXXXRMRGPANISVQGFVTMLRGCGLNARLIHSLQPP 276
++ +S++ ES+ + G + Q F ++LR + RL+ SLQ
Sbjct: 168 -GLLQNNSLIS---ESLSLEEFCKNSKLLSGSRDYGTQLFASILRNLNVPTRLVFSLQVL 223
Query: 277 DFTDSKIYNKR------VVWS--LENECLKYPIFWCEVWDKFAKQWITI----------- 317
F N+ WS +EN+ + +F K+ I
Sbjct: 224 SFRFKGAINEASSHEIVPAWSQQMENDSSSDISESAHITSRFRKRRKIIQPSFSNLSHLD 283
Query: 318 --DIVGQEIIEQVRYKSK-----------------LEPIG---------RINSA----FN 345
DIV ++ +V K ++P G R A N
Sbjct: 284 ASDIVTEDTKLKVIDSPKPVFWVEAFNKAMQKWVCVDPFGDASVIGKYRRFEPASSDHLN 343
Query: 346 MMRYVIAFDRKQGCKDVSRRYIAHLQNKVRKKRITREAKLNEWFNSIIKFLNKRN--RNR 403
M YV A + KDV+R+Y H K+ K R+ W N I + K N
Sbjct: 344 QMTYVFAIEANGYVKDVTRKYCLHYY-KILKNRVEIFPFGKAWMNRIFSKIGKPRDFYND 402
Query: 404 IDDYEDEYFDLRNEHEGIPDSLQDIKNHPFYVLEKDLRANQVLKPGAQQCGFLRLRNKSN 463
+D ED + EGIP ++QD+K+HP +VLE+ L+ NQ +K G + CG + N N
Sbjct: 403 MDAIEDAELLRLEQSEGIPRNIQDLKDHPLFVLERHLKKNQAIKTG-KSCGRI---NTKN 458
Query: 464 SLLKVFPRKDVISCYSARHWYMQGRALKSGAKHLLTHKIKNPVEEDEDEERLYPIGQTEY 523
+ V+PRK V + +SA HWY +GR +K GA+ L K + V DEE T+
Sbjct: 459 GVELVYPRKYVSNGFSAEHWYRKGRIIKPGAQPLKHVKNGDKVLPLYDEE------ATQL 512
Query: 524 VIPKQVDADGKIPTNFYGNIDIYKPWMIPIGCCLVENPNSIKAASFLRVPFAKAVTGFKF 583
PK V A+ +P N YGNID+Y P M+P G ++ AA FL + +AKAV GF F
Sbjct: 513 YTPKPVVAN-IVPKNAYGNIDLYVPSMLPYGAYHCRKRCALAAAKFLEIDYAKAVVGFDF 571
Query: 584 ESGRRVKPKVTGVVVENEYVDALVAVIENIEECNDDAARHELELEALNGWSLLLTKLRIK 643
+ + KPK+ GVVV Y +A+ + E I++ +A + L W L+T LRI+
Sbjct: 572 QR-KYSKPKLEGVVVSKRYEEAIDLIAEEIDQEEKEAEARNVRKTCLLLWKRLITGLRIR 630
Query: 644 SRLVEEHG 651
R+ EE+G
Sbjct: 631 QRVFEEYG 638
>SPCC4G3.10c [L] KOG2179 Nucleotide excision repair complex XPC-HR23B subunit
XPC/DPB11
Length = 686
Score = 181 bits (459), Expect = 4e-45
Identities = 147/552 (26%), Positives = 246/552 (43%), Gaps = 41/552 (7%)
Query: 127 KEFRKTCHMFMLLTLVCHSYQRNEWCNDEKLQKKLAKLVSDDIFNNLHPQKDDEMPLRST 186
K R + H+ L+ H RN W + L L L+ + + +
Sbjct: 147 KSIRLSIHIMHFTCLLYHGSVRNRWLMNSLLLDGLRDLLVEKQPSVVEAWVCSSQTHEDL 206
Query: 187 RKLLDALRMLMKHWNKKFKLELTSPYEFNHL-----YMVHWDSVLKHKCESVXXXXXXXX 241
KLL+ LRM WNK FK+E + + + + + + H
Sbjct: 207 LKLLNGLRMW---WNKSFKIESHGLRKLGYRTLKQGFDIGFSPEIFHNFHEYQASLLS-- 261
Query: 242 XXRMRGPANISVQGFVTMLRGCGLNARLIHSLQPPDFTDSK-------IYNKRVVWSLEN 294
++G +++ QGF + R L ARLI SLQP F+ + I + S+++
Sbjct: 262 ---LKGSRDLAAQGFTALCRSLNLKARLIFSLQPLTFSTASYDDWSPHILPEETSTSIDD 318
Query: 295 ECLKYPIFWCEVWDKFAKQWITIDIVGQEIIEQVRYKSKLEPIGRINSAFNM-MRYVIAF 353
+ L+YPIFW E++D+ K+WI +D V + + EP G + ++ M V A+
Sbjct: 319 D-LRYPIFWTEIYDQSEKKWIAVDAVVLNGV-YTNDMTWFEPKGAYAESKHLRMGIVAAY 376
Query: 354 DRKQGCKDVSRRYIAHLQNKVRK-KRITREAKLNEWFNSIIKFLNKRNRNRIDDYEDEYF 412
D KDV+ RY + ++++K + ++ K +++ +I L KRN++ D YE++
Sbjct: 377 DNDLYAKDVTLRYTDYQSSRLKKIRHVSFADKYFDFYKAIFGQLAKRNKDAEDIYEEKEL 436
Query: 413 DLRNEHEGIPDSLQDIKNHPFYVLEKDLRANQVLKPGAQQCGFLRLRN-KSNSLLKVFPR 471
+ + P S D KNHP +VL + LR + L P A+ N K + +V+ R
Sbjct: 437 ESKVPIRE-PKSFADFKNHPEFVLIRHLRREEALLPNAKPVKTATFGNGKKATSEEVYLR 495
Query: 472 KDVISCYSARHWYMQGRALKSGAK-------------HLLTHKIKNPVEEDEDEERLYPI 518
KDV+ C + +++ +GR +K G + H+ + + + LY
Sbjct: 496 KDVVICKTPENYHKEGRVIKEGEQPRKMVKARAVTISRKREHEFRVAETNEPVLQGLYSS 555
Query: 519 GQTEYVIPKQVDADGKIPTNFYGNIDIYKPWMIPIGCCLVENPNSIKAASFLRVPFAKAV 578
QTE +P + DG IP N YGN+D + MIP G + K A L + +A AV
Sbjct: 556 DQTELYVPPPI-KDGIIPKNGYGNMDCFVESMIPKGAAHLPYRGIAKIAKKLNIDYADAV 614
Query: 579 TGFKFESGRRVKPKVTGVVVENEYVDALVAVIENIEECNDDAARHELELEALNGWSLLLT 638
TGF+F R + P TG++V E + E+ + + + W LL
Sbjct: 615 TGFEFRKHRAI-PVTTGIIVPEESAQMVYEEFLECEKIRIEKQQMKERKIIYGQWKHLLN 673
Query: 639 KLRIKSRLVEEH 650
LRI+ R+ E++
Sbjct: 674 ALRIRKRIEEQY 685
>Hs20127460 [L] KOG2179 Nucleotide excision repair complex XPC-HR23B subunit
XPC/DPB11
Length = 940
Score = 121 bits (303), Expect = 5e-27
Identities = 105/393 (26%), Positives = 170/393 (42%), Gaps = 45/393 (11%)
Query: 303 WCEVWDKFAKQWITID----IVGQEIIEQVRYKSKLEPIGRINSAFNMMRYVIAFDRKQG 358
W EV+ + ++W+ +D +VGQ + YK +P M YV+ D
Sbjct: 531 WLEVFCEQEEKWVCVDCVHGVVGQPL---TCYKYATKP----------MTYVVGIDSDGW 577
Query: 359 CKDVSRRYIAHLQNKVRKKRITREAKLNEWFNSIIKFLNKRNRNRIDDYEDEYFDLRNEH 418
+DV++RY RK R+ E W+ ++ +R + ED F ++
Sbjct: 578 VRDVTQRYDPVWMTVTRKCRVDAE-----WWAETLRPYQSPFMDR-EKKEDLEFQAKHMD 631
Query: 419 EGIPDSLQDIKNHPFYVLEKDLRANQVLKPG-AQQCGFLRLRNKSNSLLKVFPRKDVISC 477
+ +P ++ KNHP Y L++ L + + P A G+ R V+ R V +
Sbjct: 632 QPLPTAIGLYKNHPLYALKRHLLKYEAIYPETAAILGYCRGE-------AVYSRDCVHTL 684
Query: 478 YSARHWYMQGRALKSG----------AKHLLTHKIKNPVEEDEDEERLYPIGQTEYVIPK 527
+S W + R ++ G + ++ P +E++ L+ QTE P
Sbjct: 685 HSRDTWLKKARVVRLGEVPYKMVKGFSNRARKARLAEPQLREENDLGLFGYWQTEEYQPP 744
Query: 528 QVDADGKIPTNFYGNIDIYKPWMIPIGCCLVENPNSIKAASFLRVPFAKAVTGFKFESGR 587
V DGK+P N +GN+ ++ P M+PIGC + PN + A L + +A+TGF F G
Sbjct: 745 -VAVDGKVPRNEFGNVYLFLPSMMPIGCVQLNLPNLHRVARKLDIDCVQAITGFDFHGGY 803
Query: 588 RVKPKVTGVVVENEYVDALVAVIENIEECNDDAARHELELEALNGWSLLLTKLRIKSRLV 647
P G +V E+ D L+ EN + + + + E AL W LL L I+ RL
Sbjct: 804 S-HPVTDGYIVCEEFKDVLLTAWENEQAVIERKEKEKKEKRALGNWKLLAKGLLIRERLK 862
Query: 648 EEHG--AVADEDGRDYSGERDSDLEDHESYTGE 678
+G + A D G SD E+ S E
Sbjct: 863 RRYGPKSEAAAPHTDAGGGLSSDEEEGTSSQAE 895
>7303083 [L] KOG2179 Nucleotide excision repair complex XPC-HR23B subunit
XPC/DPB11
Length = 1293
Score = 120 bits (302), Expect = 6e-27
Identities = 101/357 (28%), Positives = 159/357 (44%), Gaps = 35/357 (9%)
Query: 303 WCEVWDKFAKQWITIDIVGQEIIEQVRYKSKLEPIGRIN-SAFNMMRYVIAFDRKQGCKD 361
W EVW +QWI ID+ +K KL + I +A + YV AF Q KD
Sbjct: 961 WVEVWSDVEEQWICIDL----------FKGKLHCVDTIRKNATPGLAYVFAFQDDQSLKD 1010
Query: 362 VSRRYIAHLQNKVRKKRITREAKLNEWFNSIIKFLNKRNRNRIDDYEDEYFDLRNEHEGI 421
V+ RY A VRK R+ + A L+E +I +L +R + I ED+ + + +
Sbjct: 1011 VTARYCASWSTTVRKARVEK-AWLDE---TIAPYLGRRTKRDIT--EDDQLRRIHSDKPL 1064
Query: 422 PDSLQDIKNHPFYVLEKDLRANQVL-KPGAQQCGFLRLRNKSNSLLKVFPRKDVISCYSA 480
P S+ + K+HP YVLE+ L Q L P A GF+R V+ R V +S
Sbjct: 1065 PKSISEFKDHPLYVLERHLLKFQGLYPPDAPTLGFIRGE-------AVYSRDCVHLLHSR 1117
Query: 481 RHWYMQGRALKSGAKHLLTHKIK-------NPVEEDEDEERLYPIGQTEYVIPKQVDADG 533
W R +K G + K + V +D+ E ++ QT+ P + +G
Sbjct: 1118 EIWLKSARVVKLGEQPYKVVKARPKWDRLTRTVIKDQPLE-IFGYWQTQEYEPPTAE-NG 1175
Query: 534 KIPTNFYGNIDIYKPWMIPIGCCLVENPNSIKAASFLRVPFAKAVTGFKFESGRRVKPKV 593
+P N YGN++++K M+P + P ++ L + A AV GF F G P
Sbjct: 1176 IVPRNAYGNVELFKDCMLPKKTVHLRLPGLMRICKKLNIDCANAVVGFDFHQG-ACHPMY 1234
Query: 594 TGVVVENEYVDALVAVIENIEECNDDAARHELELEALNGWSLLLTKLRIKSRLVEEH 650
G +V E+ + + A E ++ + + E W L+ L I+ RL +++
Sbjct: 1235 DGFIVCEEFREVVTAAWEEDQQVQVLKEQEKYETRVYGNWKKLIKGLLIRERLKKKY 1291
>CE25606 [L] KOG2179 Nucleotide excision repair complex XPC-HR23B subunit
XPC/DPB11
Length = 1011
Score = 102 bits (253), Expect = 3e-21
Identities = 100/388 (25%), Positives = 168/388 (42%), Gaps = 36/388 (9%)
Query: 302 FWCEVWDKFAKQWITIDIVGQEIIEQVRYKSKLEPIGRINSAFNMMRYVIAFDRKQGCKD 361
+W E W K+WI +D + +KS EP+ + + + YV A D KQG +
Sbjct: 617 YWVEYWQPREKRWICVDPL---------HKSVDEPLSIHEHSASPISYVFAIDNKQGICE 667
Query: 362 VSRRYIAHLQNKVRKKRITREAKLNEWFNSIIKFLNKRNRNRIDDYEDEYFDLRNE--HE 419
VS+RY + ++R T K W + F R + E +R +
Sbjct: 668 VSQRYAMDCVKQDFRRRRTNP-KWVAWTLFLPPFAANSERKKW-----EMMQMREDLVKR 721
Query: 420 GIPDSLQDIKNHPFYVLEKDL-RANQVLKPGAQQCGFLRLRNKSNSLLKVFPRKDVISCY 478
+P + + KNHP Y LEKDL + + P A Q ++R + V+PR V +
Sbjct: 722 PLPTVMSEYKNHPLYALEKDLLKFEAIYPPPATQKPLGQIRGHN-----VYPRSTVFTLQ 776
Query: 479 SARHWYMQGRALKSGAKHLLTHKIKN----PVEEDEDEER-LYPIGQTE-YVIPKQVDAD 532
+W R++K G K K + PVE+ ED+ +Y QTE Y P +
Sbjct: 777 GENNWLKLARSVKIGEKPYKIVKARPDPRIPVEDREDKFLDVYGYWQTEKYRRPPL--KN 834
Query: 533 GKIPTNFYGNIDIYKPWMIPIGCCLVENPNSIKAASFLRVPFAKAVTGFKFESGRRVKPK 592
GKIP N YGN+ ++ M P+ C ++ ++ + L AV G+ F+ G P
Sbjct: 835 GKIPHNEYGNVYMFNENMCPLDCTYLKLSGLVQISRKLGKQCIPAVVGWAFDGG-FTHPV 893
Query: 593 VTG-VVVENEYVDALVAVIENIEECNDDAARHELELEALNGWSLLLTKLRIKSRLVEEHG 651
+ G +V+E + +D + E +E + + + W L+ + + + ++ G
Sbjct: 894 IDGAIVLEKDAID-FINAWEKLESGRAEKEEKQRVEKIHENWKKLIKGMLRLAYVRKQFG 952
Query: 652 AVADE--DGRDYSGERDSDLEDHESYTG 677
A E R G + ++E++E G
Sbjct: 953 HPAAEKPTKRQKIGGKTEEIEENEGGAG 980
>At5g16630 [L] KOG2179 Nucleotide excision repair complex XPC-HR23B subunit
XPC/DPB11
Length = 856
Score = 87.8 bits (216), Expect = 6e-17
Identities = 96/397 (24%), Positives = 162/397 (40%), Gaps = 74/397 (18%)
Query: 300 PIFWCEVW---DKFAKQWITIDIVGQEIIEQVRYKSKLEPIGRINSAFNMMRYVIAFDRK 356
P+ W EV+ + +W+ +D V I + ++ + ++RYV+AF
Sbjct: 397 PLCWLEVYCNGENMDGKWVHVDAVNGMIDAEQNIEAAAA------ACKTVLRYVVAF-AA 449
Query: 357 QGCKDVSRRYIAHLQNKVRKKRITREAKLNEWFNSII-------------KFLNKRNRNR 403
G KDV+RRY + KR++ + W++ ++ + + RN N
Sbjct: 450 GGAKDVTRRYCTKWHT-ISSKRVS-----SVWWDMVLAPLVHLESGATHDEDIALRNFNG 503
Query: 404 IDDY-----------------EDEYFDLRNEHEGIPDSLQDIKNHPFYVLEKDLRANQVL 446
++ ED R E +P + Q K+H Y +EK L NQ+L
Sbjct: 504 LNPVSSRASSSSSSFGIRSALEDMELATRALTESLPTNQQAYKSHEIYAIEKWLHKNQIL 563
Query: 447 KPGAQQCGFLRLRNKSNSLLKVFPRKDVISCYSARHWYMQGRALKSG---AKHLLTHKIK 503
P GF S V+PR V + + W G LK+ +K L +
Sbjct: 564 HPKGPVLGFC-------SGHPVYPRTCVQTLKTKERWLRDGLQLKANEVPSKILKRNSKF 616
Query: 504 NPVEEDEDEE----------RLYPIGQTE-YVIPKQVDADGKIPTNFYGNIDIYKPWMIP 552
V++ ED + LY Q E +P V +G +P N G +D++ +P
Sbjct: 617 KKVKDFEDGDNNIKGGSSCMELYGKWQMEPLCLPPAV--NGIVPKNERGQVDVWSEKCLP 674
Query: 553 IGCCLVENPNSIKAASFLRVPFAKAVTGFKFESGRRVKPKVTGVVVENEYVDALVAVIEN 612
G + P A + +A A+ GF++ SG P G+VV E+ D ++
Sbjct: 675 PGTVHLRFPRIFAVAKRFGIDYAPAMVGFEYRSG-GATPIFEGIVVCTEFKDTILEAYAE 733
Query: 613 IEECNDDAARHELELEALNGW----SLLLTKLRIKSR 645
+E ++ R E +A + W S +LT+ R+K+R
Sbjct: 734 EQEKKEEEERRRNEAQAASRWYQLLSSILTRERLKNR 770
>YDR314c [L] KOG2179 Nucleotide excision repair complex XPC-HR23B subunit
XPC/DPB11
Length = 692
Score = 72.4 bits (176), Expect = 2e-12
Identities = 91/384 (23%), Positives = 159/384 (40%), Gaps = 73/384 (19%)
Query: 330 YKSKLEPIGRINSAFNMMRYVIAFDRKQGC-KDVSRRYIAHLQNK----------VRKKR 378
Y+ ++ +N F+ YV+ + + +DVS RY+ ++ + ++ K
Sbjct: 341 YQPSVDMKYNLNQKFH---YVVRINHAEKVLQDVSPRYVPNVCYRYFELSESSPILKSKH 397
Query: 379 ITREAKLNEWFNSIIKFLNKRNRNRIDDYEDEYFDLRNEHEGIPDSLQDIKNHPFYVLEK 438
T L++W +K LNK+ + + L N +P S+ +IK +V+
Sbjct: 398 YTSYQYLSKW----LKVLNKKKASVHHYAIMKKIALTNFT--LPKSVTEIKRTDNFVIPS 451
Query: 439 DLRANQVLKPGAQQCGFLRLRNKSNSLLKVFPRKDVISCYSARHWYMQGRALKSGAKHLL 498
L++N+VLK A+Q NS +F R+DVI S +HW + GR++ A+ L
Sbjct: 452 LLKSNEVLKACAKQAA--TFTKGDNSQEPIFWRRDVIQLKSKQHWAILGRSILPNAQPLK 509
Query: 499 THKI------------KNPVEEDEDEERL-----YPIGQTEYVIPKQVDADGKIPTNFYG 541
K K ++E E+ YP +++ + V D N +G
Sbjct: 510 RKKYLPMRERMVRNLDKYVIKELFSYEQTMKSPKYPSTYCDHLGQEHVITDLSHYKNKFG 569
Query: 542 NIDIYKPWMIPIGC------------CLVENPNSIKAASFLRVPFAKAVTGFKFESGR-R 588
NI+IY P G CL++ N K ++ + V+GF F+ +
Sbjct: 570 NIEIYSKETKPDGFELIPLSKEVDIKCLIKEYNKGK-RKMQKIKYLDVVSGFDFKQKKGH 628
Query: 589 VKPKVTGVVVENEYVDALVAVIENIEECNDDAARHELELEALNGWSLLLTKLRIKSRLVE 648
PK+ ++V+ A+ + + + L L+ W +LL KLR+ RL
Sbjct: 629 AIPKIESILVKETDYKAVQLLKQQTK-----------VLLGLSFWDILLRKLRVNDRLNA 677
Query: 649 EHGAVADEDGRDYSGERDSDLEDH 672
E+G V G + L+DH
Sbjct: 678 EYGNV---------GNNEETLDDH 692
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.317 0.136 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,785,224
Number of Sequences: 60738
Number of extensions: 1990069
Number of successful extensions: 5840
Number of sequences better than 1.0e-05: 8
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 5802
Number of HSP's gapped (non-prelim): 14
length of query: 767
length of database: 30,389,216
effective HSP length: 114
effective length of query: 653
effective length of database: 23,465,084
effective search space: 15322699852
effective search space used: 15322699852
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)