ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI3883 good U KOG4031 Intracellular trafficking, secretion, and vesicular transport Vesicle coat protein clathrin, light chain
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI3883 1356547 1355861 -229
(229 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YGR167w [U] KOG4031 Vesicle coat protein clathrin light chain 182 4e-46
SPBC9B6.08 [U] KOG4031 Vesicle coat protein clathrin light chain 96 4e-20
CE13219 [U] KOG4031 Vesicle coat protein clathrin light chain 53 4e-07
7293677 [U] KOG4031 Vesicle coat protein clathrin light chain 50 3e-06
>YGR167w [U] KOG4031 Vesicle coat protein clathrin light chain
Length = 233
Score = 182 bits (461), Expect = 4e-46
Identities = 103/235 (43%), Positives = 132/235 (55%), Gaps = 12/235 (5%)
Query: 1 MADKFPELEDDLVQDGFVTGD--GDETEFLRREAEILGDEFKTEQXXXXXXXXXXXXXT- 57
M++KFP LED + F D D+T+FL+REAEILGDEFKTEQ
Sbjct: 1 MSEKFPPLEDQNID--FTPNDKKDDDTDFLKREAEILGDEFKTEQDDILETEASPAKDDD 58
Query: 58 -------LGTSVNEADAIAAASYQPQDVEGVSNPVXXXXXXXXFGEPQSSSAEPVVRGKS 110
+N A+ ++ N E + S E V +S
Sbjct: 59 EIRDFEEQFPDINSANGAVSSDQNGSATVSSGNDNGEADDDFSTFEGANQSTESVKEDRS 118
Query: 111 EALENWKARRELEISERDQAEDKAKADLQEEAAKHIDDFYENYNIKKQQGIDQTQKEAEE 170
E ++ WK RR +EI E+D +++ K +LQ+EA KHIDDFY++YN KK+Q ++ KEAE
Sbjct: 119 EVVDQWKQRRAVEIHEKDLKDEELKKELQDEAIKHIDDFYDSYNKKKEQQLEDAAKEAEA 178
Query: 171 FLAKTHAFASQDLTVWDKALQLINLEDADIVDGRDRSKFKEILQRLKGNGSAPGA 225
FL K F QD T WD+ALQLIN +DADI+ GRDRSK KEIL RLKGN APGA
Sbjct: 179 FLKKRDEFFGQDNTTWDRALQLINQDDADIIGGRDRSKLKEILLRLKGNAKAPGA 233
>SPBC9B6.08 [U] KOG4031 Vesicle coat protein clathrin light chain
Length = 229
Score = 95.9 bits (237), Expect = 4e-20
Identities = 70/231 (30%), Positives = 108/231 (46%), Gaps = 18/231 (7%)
Query: 4 KFPELEDDLVQDGFVTGDGDE----TEFLRREAEILGDE---FKTEQXXXXXXXXXXXXX 56
+FP LED DG VT D+ T+FL RE LG++ F+T +
Sbjct: 3 QFPALED--FDDGLVTAPVDDSKNNTDFLEREKLALGEDAGQFETPEDKDALLNFENDSE 60
Query: 57 TLGTSVNEADAIAAASYQPQDVEGVSNPVXXXXXXXXFGEPQSSSAEPVVRGKSEALENW 116
T + ++ P D E ++ G+ + E G E + W
Sbjct: 61 AEQTRFEQ-------NFPPIDAEMQASGTFSAPKAPYMGQAEVHPPEDE-SGDPEPVRKW 112
Query: 117 KARRELEISERDQAEDKAKADLQEEAAKHIDDFYENYNIKKQQGIDQTQKEAEEFLAKTH 176
K + I ERD++ K + E+A K IDDFYEN+N K+ + I +++KE E+ L +
Sbjct: 113 KEDQMKRIQERDESSKKLRESNIEKARKAIDDFYENFNDKRDKVIAKSRKEQEKLLEENE 172
Query: 177 AFASQDLTVWDKALQLINLEDADIVDGRDRSKFKEILQRLKGNGSAPGATG 227
+ S T W++ L+LI+L D GR +F+E+L L + +APGA G
Sbjct: 173 S-KSTGTTSWERILKLIDLSDKPEAHGRSTERFRELLISLAKDSNAPGAAG 222
>CE13219 [U] KOG4031 Vesicle coat protein clathrin light chain
Length = 226
Score = 52.8 bits (125), Expect = 4e-07
Identities = 34/119 (28%), Positives = 64/119 (53%), Gaps = 9/119 (7%)
Query: 105 VVRGKSEALENWKARRELEISERDQAEDKAKADLQEEAAKHIDDFYENYNIKKQQGIDQ- 163
V R ++E + WKA++E +S++D+AE+K K +L+ A K ++++Y+ Q D+
Sbjct: 113 VPRIEAEKIRLWKAQQEQLLSKKDEAEEKKKIELRANAKKELEEWYKQREKTLQLSHDEN 172
Query: 164 --TQKEAEEFLAKTHAFASQDLTVWDKALQLINLEDADIVDGRDRSKFKEILQRLKGNG 220
+K +E AK +Q W+ +L++ + + G+D S+ K +L LK G
Sbjct: 173 LKNEKSNQELFAKQQDGDAQ----WETVNKLVDQQKSK--SGKDLSRLKTLLAGLKHAG 225
>7293677 [U] KOG4031 Vesicle coat protein clathrin light chain
Length = 219
Score = 49.7 bits (117), Expect = 3e-06
Identities = 46/203 (22%), Positives = 81/203 (39%), Gaps = 18/203 (8%)
Query: 26 EFLRREAEILGDEFKTEQXXXXXXXXXXXXXT------LGTSVNEADAIAAASYQPQDVE 79
EFL RE LGD + E LG + +E D ++A +
Sbjct: 18 EFLAREQSALGD-LEAEITGGSASAPPAASTDEGLGELLGGTASEGDLLSAGGTGGLESS 76
Query: 80 GVSNPVXXXXXXXXFGEPQSSSAEPVVRGKSEALENWKARRELEISERDQAEDKAKADLQ 139
S V EP S P R + E + W+ ++ + E+D E++ K +L+
Sbjct: 77 TGSFEVIGGES----NEPVGISGPPPSREEPEKIRKWREEQKQRLEEKDIEEERKKEELR 132
Query: 140 EEAAKHIDDFYENYNIKKQQGIDQTQ---KEAEEFLAKTHAFASQDLTVWDKALQLINLE 196
+++ K +DD+ + I +T+ + AE+ A + T W++ +L +
Sbjct: 133 QQSKKELDDWLRQIG----ESISKTKLASRNAEKQAATLENGTIEPGTEWERIAKLCDFN 188
Query: 197 DADIVDGRDRSKFKEILQRLKGN 219
G+D S+ + I LK N
Sbjct: 189 PKVNKAGKDVSRMRSIYLHLKQN 211
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.308 0.129 0.350
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,313,712
Number of Sequences: 60738
Number of extensions: 460897
Number of successful extensions: 1793
Number of sequences better than 1.0e-05: 4
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1787
Number of HSP's gapped (non-prelim): 4
length of query: 229
length of database: 30,389,216
effective HSP length: 103
effective length of query: 126
effective length of database: 24,133,202
effective search space: 3040783452
effective search space used: 3040783452
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)