ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI3939 good R KOG0118 General function prediction only FOG: RRM domain
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI3939 1375042 1376808 589
(589 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YHR086w [R] KOG0118 FOG: RRM domain 343 3e-94
SPAC17A2.09c [R] KOG0118 FOG: RRM domain 182 2e-45
At5g19350 [R] KOG0118 FOG: RRM domain 157 4e-38
SPBC23E6.01c [R] KOG0118 FOG: RRM domain 140 7e-33
At4g27000 [R] KOG0118 FOG: RRM domain 119 2e-26
Hs8923460 [R] KOG0118 FOG: RRM domain 117 4e-26
Hs4507499 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein T... 117 4e-26
At3g19130 [R] KOG0118 FOG: RRM domain 117 5e-26
At1g49600 [R] KOG0118 FOG: RRM domain 117 6e-26
YBR212w [R] KOG0118 FOG: RRM domain 111 3e-24
Hs11863161 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein ... 110 8e-24
YNL016w [R] KOG0118 FOG: RRM domain 109 1e-23
At5g54900 [R] KOG0118 FOG: RRM domain 108 3e-23
At1g47500 [R] KOG0118 FOG: RRM domain 108 3e-23
Hs13435394 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein ... 107 4e-23
Hs11863163 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein ... 105 1e-22
At1g47490 [R] KOG0118 FOG: RRM domain 105 2e-22
At1g11650 [R] KOG0118 FOG: RRM domain 103 7e-22
At3g14100 [R] KOG0118 FOG: RRM domain 103 1e-21
SPBC1289.12 [R] KOG0118 FOG: RRM domain 97 5e-20
At1g54080 [R] KOG0118 FOG: RRM domain 91 6e-18
CE06396 [R] KOG0118 FOG: RRM domain 86 2e-16
At1g17370 [R] KOG0118 FOG: RRM domain 83 1e-15
7301090 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA... 83 1e-15
7295704 [R] KOG0118 FOG: RRM domain 81 4e-15
CE27708 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA... 80 1e-14
Hs11386163 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfam... 72 3e-12
CE21988 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA... 70 1e-11
7295878 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 70 1e-11
Hs4503553 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 67 6e-11
At1g22760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 67 1e-10
Hs4758262 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 66 1e-10
At1g71770 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 65 2e-10
Hs4505575 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 64 8e-10
Hs13569958 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 64 8e-10
At3g16380 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 62 2e-09
CE07989 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA... 62 2e-09
Hs17435151 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 61 4e-09
At1g60000 [R] KOG0118 FOG: RRM domain 61 4e-09
Hs4503551 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 61 5e-09
Hs8922328 [R] KOG0153 Predicted RNA-binding protein (RRM superfa... 60 1e-08
At4g34110 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 60 1e-08
Hs22058480 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 59 2e-08
HsM13236563 [R] KOG0226 RNA-binding proteins 59 2e-08
Hs21359951 [R] KOG0226 RNA-binding proteins 59 2e-08
YER165w [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 59 3e-08
CE03230 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 59 3e-08
CE02193 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 59 3e-08
At3g04500 [R] KOG0226 RNA-binding proteins 59 3e-08
CE27709 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA... 58 4e-08
CE20412 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 58 4e-08
7291222 [R] KOG0151 Predicted splicing regulator contains RRM SW... 58 4e-08
HsM8922450 [K] KOG0147 Transcriptional coactivator CAPER (RRM su... 58 5e-08
Hs21361702 [K] KOG0147 Transcriptional coactivator CAPER (RRM su... 58 5e-08
At1g49760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 58 5e-08
Hs4504715 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 57 6e-08
Hs20559158 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 57 6e-08
Hs14790190 [R] KOG0112 Large RNA-binding protein (RRM superfamily) 57 8e-08
CE24791 [A] KOG0131 Splicing factor 3b subunit 4 57 8e-08
At2g23350 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 57 8e-08
SPAC57A7.04c [AJ] KOG0123 Polyadenylate-binding protein (RRM sup... 57 1e-07
At5g06210 [R] KOG0118 FOG: RRM domain 57 1e-07
7296727 [R] KOG0226 RNA-binding proteins 57 1e-07
Hs18201888 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 56 1e-07
At1g07360 [R] KOG0153 Predicted RNA-binding protein (RRM superfa... 56 1e-07
YFR023w [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 56 2e-07
At5g50250 [R] KOG0118 FOG: RRM domain 56 2e-07
At4g13850 [R] KOG0118 FOG: RRM domain 56 2e-07
At4g00830 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R ... 55 4e-07
At2g29580 [R] KOG0153 Predicted RNA-binding protein (RRM superfa... 55 4e-07
7296892 [R] KOG0153 Predicted RNA-binding protein (RRM superfamily) 55 4e-07
7290796 [R] KOG0118 FOG: RRM domain 55 4e-07
7290050 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 55 4e-07
Hs4757926 [K] KOG0147 Transcriptional coactivator CAPER (RRM sup... 54 5e-07
7302665 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 54 5e-07
7297213 [K] KOG0147 Transcriptional coactivator CAPER (RRM super... 54 5e-07
CE24459 [R] KOG0226 RNA-binding proteins 54 7e-07
CE16307 [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 54 7e-07
CE00983 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 54 7e-07
At2g37220 [R] KOG0118 FOG: RRM domain 54 7e-07
At4g24770 [R] KOG0118 FOG: RRM domain 54 9e-07
At3g53460 [R] KOG0118 FOG: RRM domain 54 9e-07
At3g26420 [R] KOG0118 FOG: RRM domain 54 9e-07
YGR159c [K] KOG4210 Nuclear localization sequence binding protein 53 1e-06
Hs4503259 [R] KOG0118 FOG: RRM domain 53 1e-06
Hs14731277 [R] KOG0118 FOG: RRM domain 53 1e-06
Hs14149675 [A] KOG0108 mRNA cleavage and polyadenylation factor ... 53 1e-06
CE16308 [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 53 1e-06
At5g51300 [A] KOG0119 Splicing factor 1/branch point binding pro... 53 1e-06
At4g09040 [R] KOG0118 FOG: RRM domain 53 1e-06
At5g09880 [K] KOG0147 Transcriptional coactivator CAPER (RRM sup... 53 1e-06
At3g23830 [R] KOG0118 FOG: RRM domain 53 1e-06
At3g07810 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage ... 53 1e-06
7294989 [R] KOG0118 FOG: RRM domain 53 1e-06
Hs5729816 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM supe... 52 2e-06
At2g21660 [R] KOG0118 FOG: RRM domain 52 2e-06
At4g39260 [R] KOG0118 FOG: RRM domain 52 3e-06
At2g43370 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM su... 52 3e-06
CE18119 [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 52 3e-06
Hs5729794 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM supe... 51 4e-06
Hs4557493 [A] KOG0108 mRNA cleavage and polyadenylation factor I... 51 4e-06
CE16126 [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 51 4e-06
At5g61030 [R] KOG0118 FOG: RRM domain 51 4e-06
At5g47320 [J] KOG0899 Mitochondrial/chloroplast ribosomal protei... 51 4e-06
At3g52380 [R] KOG0118 FOG: RRM domain 51 4e-06
At5g04280 [R] KOG0118 FOG: RRM domain 51 6e-06
At2g35410 [R] KOG0118 FOG: RRM domain 51 6e-06
At1g74230 [R] KOG0118 FOG: RRM domain 51 6e-06
Hs5032069 [A] KOG0131 Splicing factor 3b subunit 4 50 1e-05
Hs13644124 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 50 1e-05
At5g47620 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage ... 50 1e-05
At5g25060 [R] KOG0151 Predicted splicing regulator contains RRM ... 50 1e-05
At2g36660 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 50 1e-05
>YHR086w [R] KOG0118 FOG: RRM domain
Length = 523
Score = 343 bits (881), Expect = 3e-94
Identities = 183/349 (52%), Positives = 223/349 (63%), Gaps = 31/349 (8%)
Query: 57 QLYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAV-----NNSGYCFVEFP 111
QLYMGDL+P W +N ++ IW+ LGE N+ V+++ ++ N NN GYCFV+FP
Sbjct: 55 QLYMGDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGPKNNQGYCFVDFP 114
Query: 112 NQMAASNALMKSGLRVPMDSNYALKLNWASFATA----------PGSEFTLFVGDLAPNV 161
+ A+NAL+K+G+ +P N LKLNWA+ + + G+ ++FVGDLAPNV
Sbjct: 115 SSTHAANALLKNGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGDLAPNV 174
Query: 162 TEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNGRA 221
TE+QLFELFI+RY+ST +AKIV DQ TG+SKGYGFVKF N EQQ AL EMQG FLNGRA
Sbjct: 175 TESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRA 234
Query: 222 IRVGTTSKNKXXXXXXXXXXXXXXXXXXXRFXXXXXXXXXXXXXXXXXXXXXXXXHISTP 281
I+VG TS + H+
Sbjct: 235 IKVGPTSGQQQHVSGNNDYNRSSSSLNNENVDSRFLSKGQSFLSNGNNNMGFKRNHM--- 291
Query: 282 TSQATPANSGMLQSKFSYPVLQQPSLSQFTDPNNTTVFIGGLSTLITEDELRSYFQPFGQ 341
S+F YPV QQPSL+ FTDPNNTTVFIGGLS+L+TEDELR+YFQPFG
Sbjct: 292 -------------SQFIYPVQQQPSLNHFTDPNNTTVFIGGLSSLVTEDELRAYFQPFGT 338
Query: 342 IVYVKIPVGKGCGFVQYVDRISAETAISKMQGFPIGNSRIRLSWGRSAK 390
IVYVKIPVGK CGFVQYVDR+SAE AI+ MQGFPI NSR+RLSWGRSAK
Sbjct: 339 IVYVKIPVGKCCGFVQYVDRLSAEAAIAGMQGFPIANSRVRLSWGRSAK 387
>SPAC17A2.09c [R] KOG0118 FOG: RRM domain
Length = 632
Score = 182 bits (461), Expect = 2e-45
Identities = 117/341 (34%), Positives = 165/341 (48%), Gaps = 62/341 (18%)
Query: 55 STQLYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPNQM 114
S L+MGDL P I+ +W+ L EP V VK+++S + ++ YCFV+F +
Sbjct: 84 SDTLWMGDLEPWMDATFIQQLWASLNEP-VNVKVMRSKASSSETLIS---YCFVQFSSSA 139
Query: 115 AASNALMKSGLRVPMDSNYALKLNWASFA-------TAPGSEFTLFVGDLAPNVTEAQLF 167
AA ALMK + ++ KLNWA+ + EF++FVGDL P ++ LF
Sbjct: 140 AAERALMKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLF 199
Query: 168 ELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNGRAIRVGTT 227
F S Y S +AKI+ D TG+S+ YGFV+F +E EQQ AL+ MQG GR +R+
Sbjct: 200 MTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVA 259
Query: 228 SKNKXXXXXXXXXXXXXXXXXXXRFXXXXXXXXXXXXXXXXXXXXXXXXHISTPTSQATP 287
S + T TS P
Sbjct: 260 SPKSRASIAADSALGI----------------------------------VPTSTSNRQP 285
Query: 288 ANSGMLQSKFSYPVLQQPSLSQFTDPNNTTVFIGGLSTLITEDELRSYFQPFGQIVYVKI 347
L N T VF+GGL++ ++E +L+ FQPFG+I+ +KI
Sbjct: 286 ----------------NQDLCSMDPLNTT-VFVGGLASNLSEKDLQVCFQPFGRILNIKI 328
Query: 348 PVGKGCGFVQYVDRISAETAISKMQGFPIGNSRIRLSWGRS 388
P GKGCGFVQY ++ +AE AI+ MQG +G S IRL+WG +
Sbjct: 329 PFGKGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLAWGHN 369
>At5g19350 [R] KOG0118 FOG: RRM domain
Length = 425
Score = 157 bits (397), Expect = 4e-38
Identities = 107/336 (31%), Positives = 160/336 (46%), Gaps = 57/336 (16%)
Query: 58 LYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPNQMAAS 117
L++GDL EN + S +S GE V VK+I++ + GY F+EF + AA
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGEL-VSVKVIRNKITGQPE-----GYGFIEFISHAAAE 79
Query: 118 NALMK-SGLRVPMDSNYALKLNWASFATAP----GSEFTLFVGDLAPNVTEAQLFELFIS 172
L +G ++P + +LNWASF + G + ++FVGDLAP+VT+ L E F
Sbjct: 80 RTLQTYNGTQMP-GTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRV 138
Query: 173 RYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNGRAIRVGTTSKNKX 232
YSS AK+V D TG SKGYGFVKF E E+ RA+ EM G + + R +R+ + K
Sbjct: 139 HYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKK- 197
Query: 233 XXXXXXXXXXXXXXXXXXRFXXXXXXXXXXXXXXXXXXXXXXXXHISTPTSQATPANSGM 292
++ P++ A P + +
Sbjct: 198 ------------------------------NVGVQQQYVTKAVYPVTVPSAVAAPVQAYV 227
Query: 293 LQSKFSYPVLQQPSLSQFTDPNNTTVFIGGLSTLITEDELRSYFQPFGQIVYVKIPVGKG 352
+ +D TT+ + L +TE+EL+ F G+++YVKIP KG
Sbjct: 228 APPE--------------SDVTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKIPATKG 273
Query: 353 CGFVQYVDRISAETAISKMQGFPIGNSRIRLSWGRS 388
G+VQ+ R SAE A+ +MQG IG +R+SW ++
Sbjct: 274 YGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSKN 309
>SPBC23E6.01c [R] KOG0118 FOG: RRM domain
Length = 255
Score = 140 bits (352), Expect = 7e-33
Identities = 84/205 (40%), Positives = 111/205 (53%), Gaps = 51/205 (24%)
Query: 185 DQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNGRAIRVG-TTSKNKXXXXXXXXXXXX 243
D T VS+GYGFV+F +E +Q+ AL EMQG R IRVG T K+K
Sbjct: 3 DPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSKA----------- 51
Query: 244 XXXXXXXRFXXXXXXXXXXXXXXXXXXXXXXXXHISTPTSQATPANSGMLQSKFSYPVLQ 303
H+ +P + + + + PV
Sbjct: 52 ---------------------------------HVFSPVNVVPVSMPPVGFYSAAQPV-- 76
Query: 304 QPSLSQFTDPNNTTVFIGGLSTLITEDELRSYFQPFGQIVYVKIPVGKGCGFVQYVDRIS 363
QF D N+TVF+GGLS ++E+EL+ FQ FG+IVYVKIP GKGCGFVQ+V+R S
Sbjct: 77 ----PQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQS 132
Query: 364 AETAISKMQGFPIGNSRIRLSWGRS 388
AE AI+++QG+P+GNSRIRLSWGR+
Sbjct: 133 AEIAINQLQGYPLGNSRIRLSWGRN 157
>At4g27000 [R] KOG0118 FOG: RRM domain
Length = 427
Score = 119 bits (297), Expect = 2e-26
Identities = 73/180 (40%), Positives = 100/180 (55%), Gaps = 13/180 (7%)
Query: 58 LYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPNQMAAS 117
L++GDL P EN + +++ + GE K+I++ S GY F+EF N A
Sbjct: 82 LWIGDLQPWMDENYLMNVFGLTGEATA-AKVIRNKQNGYSE-----GYGFIEFVNHATAE 135
Query: 118 NALMK-SGLRVPMDSNYALKLNWASFAT-----APGSEFTLFVGDLAPNVTEAQLFELFI 171
L +G +P S A +LNWA A G E T+FVGDLAP+VT+ L E F
Sbjct: 136 RNLQTYNGAPMP-SSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFK 194
Query: 172 SRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNGRAIRVGTTSKNK 231
+ YSS AK+V D+ TG SKGYGFV+F +E EQ RA+ EM G + + R +R G + K
Sbjct: 195 AVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKK 254
Score = 99.4 bits (246), Expect = 1e-20
Identities = 48/96 (50%), Positives = 63/96 (65%), Gaps = 7/96 (7%)
Query: 300 PVLQQPSLSQFT-------DPNNTTVFIGGLSTLITEDELRSYFQPFGQIVYVKIPVGKG 352
P+ QP+ Q T DP NTT+F+G + +TED+L+S F FG++V+VKIP GK
Sbjct: 255 PLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKR 314
Query: 353 CGFVQYVDRISAETAISKMQGFPIGNSRIRLSWGRS 388
CGFVQY +R AE A+S + G +G IRLSWGRS
Sbjct: 315 CGFVQYANRACAEQALSVLNGTQLGGQSIRLSWGRS 350
>Hs8923460 [R] KOG0118 FOG: RRM domain
Length = 287
Score = 117 bits (294), Expect = 4e-26
Identities = 73/175 (41%), Positives = 104/175 (58%), Gaps = 11/175 (6%)
Query: 55 STQLYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPNQM 114
+ L+MGDL P EN I ++ +GE + VK+I+ N+ + +GYCFVEF +
Sbjct: 2 AASLWMGDLEPYMDENFISRAFATMGETVMSVKIIR----NRLTGIP-AGYCFVEFADLA 56
Query: 115 AASNALMK-SGLRVP-MDSNYALKLNWASFATAPGS--EFTLFVGDLAPNVTEAQLFELF 170
A L K +G +P KLN+A++ P + E++LFVGDL P+V + L+E F
Sbjct: 57 TAEKCLHKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFF 116
Query: 171 ISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTF-LNGRAIRV 224
+ Y S K+V DQ TGVSKGYGFVKF +E+EQ+RAL E QG L + +R+
Sbjct: 117 VKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 170
>Hs4507499 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 375
Score = 117 bits (294), Expect = 4e-26
Identities = 96/339 (28%), Positives = 150/339 (43%), Gaps = 78/339 (23%)
Query: 58 LYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPNQMAAS 117
LY+G+L+ D TE I ++S +G P K+I + +N YCFVEF A+
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIG-PCKSCKMI-------TEHTSNDPYCFVEFYEHRDAA 62
Query: 118 NALMKSGLRVPMDSNYALKLNWASFATAPGSE-------FTLFVGDLAPNVTEAQLFELF 170
AL R + +K+NWA T P S+ F +FVGDL+P +T + F
Sbjct: 63 AALAAMNGRKILGKE--VKVNWA---TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAF 117
Query: 171 ISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNGRAIRVGTTSKN 230
+ + +A++V D TG SKGYGFV F N+++ + A+V M G +L GR IR ++
Sbjct: 118 -APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR- 175
Query: 231 KXXXXXXXXXXXXXXXXXXXRFXXXXXXXXXXXXXXXXXXXXXXXXHISTPTSQATPANS 290
P ++T N+
Sbjct: 176 ------------------------------------------------KPPAPKSTQENN 187
Query: 291 GMLQSKFSYPVLQQPSLSQFTDPNNTTVFIGGLSTLITEDELRSYFQPFGQIVYVKIPVG 350
Q +F V Q + P N TV+ GG+++ +T+ +R F PFGQI+ +++
Sbjct: 188 -TKQLRFEDVVNQ-------SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE 239
Query: 351 KGCGFVQYVDRISAETAISKMQGFPIGNSRIRLSWGRSA 389
KG FV++ SA AI + G I ++ WG+ +
Sbjct: 240 KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 278
Score = 55.5 bits (132), Expect = 2e-07
Identities = 48/192 (25%), Positives = 84/192 (43%), Gaps = 37/192 (19%)
Query: 54 NSTQLYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPNQ 113
N +++GDL+P+ T DIKS ++ G+ + +++K KS GY FV F N+
Sbjct: 95 NHFHVFVGDLSPEITTEDIKSAFAPFGKIS-DARVVKDMATGKS-----KGYGFVSFYNK 148
Query: 114 MAASNALMKSGLRVPMDSNYALKLNWASFAT-APGS---------------------EFT 151
+ A NA++ G + ++ NWA+ AP S T
Sbjct: 149 LDAENAIVHMGGQ--WLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCT 206
Query: 152 LFVGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVE 211
++ G +A +T+ QL S + + ++ + KGY FV+F A+V
Sbjct: 207 VYCGGIASGLTD-QLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVS 259
Query: 212 MQGTFLNGRAIR 223
+ GT + G ++
Sbjct: 260 VNGTTIEGHVVK 271
>At3g19130 [R] KOG0118 FOG: RRM domain
Length = 435
Score = 117 bits (293), Expect = 5e-26
Identities = 71/180 (39%), Positives = 104/180 (57%), Gaps = 12/180 (6%)
Query: 58 LYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPNQMAAS 117
L++GDL E + S +S GE + VK+I++ ++S GY FVEF ++ AA
Sbjct: 110 LWVGDLLHWMDETYLHSCFSHTGEVS-SVKVIRNKLTSQSE-----GYGFVEFLSRAAAE 163
Query: 118 NALMKSGLRVPMDSNYALKLNWASFATAP------GSEFTLFVGDLAPNVTEAQLFELFI 171
L V +S+ ++NWASF+T G + ++FVGDL+P+VT+ L E F
Sbjct: 164 EVLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFS 223
Query: 172 SRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNGRAIRVGTTSKNK 231
RY S +AK+V D TG SKGYGFV+F +E E+ RAL EM G + + R +RVG + +
Sbjct: 224 DRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKR 283
Score = 92.8 bits (229), Expect = 1e-18
Identities = 41/77 (53%), Positives = 55/77 (71%)
Query: 312 DPNNTTVFIGGLSTLITEDELRSYFQPFGQIVYVKIPVGKGCGFVQYVDRISAETAISKM 371
+ N T+F+GG+ + +++LR F FG++V VKIPVGKGCGFVQ+ DR SAE AI +
Sbjct: 317 ESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAIESL 376
Query: 372 QGFPIGNSRIRLSWGRS 388
G IG + +RLSWGRS
Sbjct: 377 NGTVIGKNTVRLSWGRS 393
>At1g49600 [R] KOG0118 FOG: RRM domain
Length = 445
Score = 117 bits (292), Expect = 6e-26
Identities = 73/181 (40%), Positives = 106/181 (58%), Gaps = 14/181 (7%)
Query: 58 LYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPNQMAAS 117
L++GDL E + + +S E + VK+I++ +S GY FVEF ++ AA
Sbjct: 121 LWVGDLLHWMDETYLHTCFSHTNEVS-SVKVIRNKQTCQSE-----GYGFVEFLSRSAAE 174
Query: 118 NALMK-SGLRVPMDSNYALKLNWASFATAP------GSEFTLFVGDLAPNVTEAQLFELF 170
AL SG+ +P ++ +LNWASF+T G + ++FVGDLAP+V++A L E F
Sbjct: 175 EALQSFSGVTMP-NAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETF 233
Query: 171 ISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNGRAIRVGTTSKN 230
RY S AK+V D TG SKGYGFV+F +E E+ RA+ EM G F + R +RVG +
Sbjct: 234 AGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPK 293
Query: 231 K 231
+
Sbjct: 294 R 294
Score = 95.9 bits (237), Expect = 2e-19
Identities = 43/77 (55%), Positives = 57/77 (73%)
Query: 312 DPNNTTVFIGGLSTLITEDELRSYFQPFGQIVYVKIPVGKGCGFVQYVDRISAETAISKM 371
+ NN+T+F+GGL +TE++L F FG++V VKIPVGKGCGFVQ+ +R SAE AI +
Sbjct: 323 ESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGKGCGFVQFANRQSAEEAIGNL 382
Query: 372 QGFPIGNSRIRLSWGRS 388
G IG + +RLSWGRS
Sbjct: 383 NGTVIGKNTVRLSWGRS 399
Score = 51.2 bits (121), Expect = 4e-06
Identities = 52/194 (26%), Positives = 85/194 (43%), Gaps = 41/194 (21%)
Query: 58 LYMGDLNPDWTENDIKSIWSMLGE-PNVQ-VKLIKSSNPNKSHAVNNSGYCFVEFPNQMA 115
+++GDL PD +D + + G P+V+ K++ SN +S GY FV F ++
Sbjct: 215 IFVGDLAPD--VSDAVLLETFAGRYPSVKGAKVVIDSNTGRS-----KGYGFVRFGDENE 267
Query: 116 ASNAL------------MKSGLRVP--------MDSNYALKLNWA-----SFATAPGSEF 150
S A+ M+ G+ P + + AL L S + +
Sbjct: 268 RSRAMTEMNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSMSDGESNNS 327
Query: 151 TLFVGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALV 210
T+FVG L +VTE L + F S + ++ KI V KG GFV+F N + A+
Sbjct: 328 TIFVGGLDADVTEEDLMQPF-SDFGEVVSVKIP------VGKGCGFVQFANRQSAEEAIG 380
Query: 211 EMQGTFLNGRAIRV 224
+ GT + +R+
Sbjct: 381 NLNGTVIGKNTVRL 394
>YBR212w [R] KOG0118 FOG: RRM domain
Length = 672
Score = 111 bits (278), Expect = 3e-24
Identities = 84/242 (34%), Positives = 116/242 (47%), Gaps = 70/242 (28%)
Query: 52 IQNSTQ----LYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIK-------------SSNP 94
++ ST+ L+MGDL+P + E I+ IWS L + V VKLI+ SSN
Sbjct: 26 VETSTEPPRTLWMGDLDPSFDEATIEEIWSKL-DKKVIVKLIRAKKNLLIPCSSTSSSNN 84
Query: 95 NKSHA-----------------------------------VNNSGYCFVEFPNQMAASNA 119
N S ++++GYCFVEF Q A A
Sbjct: 85 NTSEENAENQQSASNSTDQLDNSQMININGISFIDPSTTQLHHAGYCFVEFETQKDAKFA 144
Query: 120 LMKSGLRVP--------MDSNYALK----LNWASFATAPGS-----EFTLFVGDLAPNVT 162
L + +P +N K LNWAS AT S EF+LFVGDL+P T
Sbjct: 145 LSLNATPLPNFYSPTTNSQTNPTFKRTFRLNWASGATLQSSIPSTPEFSLFVGDLSPTAT 204
Query: 163 EAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNGRAI 222
EA L LF +R+ S +++ D TG S+ +GFV+F +E E++RAL+EM G + GRA+
Sbjct: 205 EADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALIEMSGKWFQGRAL 264
Query: 223 RV 224
RV
Sbjct: 265 RV 266
Score = 100 bits (249), Expect = 6e-21
Identities = 49/83 (59%), Positives = 60/83 (72%)
Query: 305 PSLSQFTDPNNTTVFIGGLSTLITEDELRSYFQPFGQIVYVKIPVGKGCGFVQYVDRISA 364
PS + TDP NTTVF+GGL TE +LRS F+PFG I+ V+IP GK CGFV++ RI A
Sbjct: 349 PSNTYNTDPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNCGFVKFEKRIDA 408
Query: 365 ETAISKMQGFPIGNSRIRLSWGR 387
E +I +QGF +G S IRLSWGR
Sbjct: 409 EASIQGLQGFIVGGSPIRLSWGR 431
>Hs11863161 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 375
Score = 110 bits (274), Expect = 8e-24
Identities = 95/337 (28%), Positives = 144/337 (42%), Gaps = 78/337 (23%)
Query: 58 LYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPNQMAAS 117
LY+G+L+ D TE I ++S +G P K+I + N YCFVEF A+
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIG-PCKNCKMIMDT-------AGNDPYCFVEFHEHRHAA 60
Query: 118 NALMKSGLRVPMDSNYALKLNWASFATAPGSE-------FTLFVGDLAPNVTEAQLFELF 170
AL R M +K+NWA T P S+ F +FVGDL+P +T + F
Sbjct: 61 AALAAMNGRKIMGKE--VKVNWA---TTPSSQKKDTSNHFHVFVGDLSPQITTEDIKAAF 115
Query: 171 ISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNGRAIRVGTTSKN 230
+ + +A++V D TG SKGYGFV F N+ + + A+ +M G +L GR IR ++
Sbjct: 116 -APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 174
Query: 231 KXXXXXXXXXXXXXXXXXXXRFXXXXXXXXXXXXXXXXXXXXXXXXHISTPTSQATPANS 290
P + + S
Sbjct: 175 --------------------------------------------------PPAPKSTYES 184
Query: 291 GMLQSKFSYPVLQQPSLSQFTDPNNTTVFIGGLSTLITEDELRSYFQPFGQIVYVKIPVG 350
Q + V+ Q S S T V+ GG+++ +TE +R F PFGQI+ +++
Sbjct: 185 NTKQLSYD-EVVNQSSPSNCT------VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD 237
Query: 351 KGCGFVQYVDRISAETAISKMQGFPIGNSRIRLSWGR 387
KG FV++ SA AI + G I ++ WG+
Sbjct: 238 KGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGK 274
Score = 54.3 bits (129), Expect = 5e-07
Identities = 48/192 (25%), Positives = 82/192 (42%), Gaps = 37/192 (19%)
Query: 54 NSTQLYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPNQ 113
N +++GDL+P T DIK+ ++ G + +++K KS GY FV F N+
Sbjct: 93 NHFHVFVGDLSPQITTEDIKAAFAPFGRIS-DARVVKDMATGKS-----KGYGFVSFFNK 146
Query: 114 MAASNALMKSGLRVPMDSNYALKLNWASFAT-APGSEF---------------------T 151
A NA+ + G + ++ NWA+ AP S + T
Sbjct: 147 WDAENAIQQMGGQ--WLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCT 204
Query: 152 LFVGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVE 211
++ G + +TE QL S + + ++ D KGY FV+F + A+V
Sbjct: 205 VYCGGVTSGLTE-QLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSHESAAHAIVS 257
Query: 212 MQGTFLNGRAIR 223
+ GT + G ++
Sbjct: 258 VNGTTIEGHVVK 269
>YNL016w [R] KOG0118 FOG: RRM domain
Length = 453
Score = 109 bits (273), Expect = 1e-23
Identities = 99/351 (28%), Positives = 143/351 (40%), Gaps = 36/351 (10%)
Query: 58 LYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPNQMAAS 117
LY+G+L+ TE+ +K + + G P +K++ N NK N Y FVE+ A+
Sbjct: 77 LYVGNLDKAITEDILKQYFQV-GGPIANIKIMIDKN-NK-----NVNYAFVEYHQSHDAN 129
Query: 118 NALMKSGLRVPMDSNYALKLNWASFATAPGSE--FTLFVGDLAPNVTEAQLFELFISRYS 175
AL L N +K+NWA + S+ F LFVGDL NV + L F +
Sbjct: 130 IALQT--LNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAF-KDFP 186
Query: 176 STLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNGRAIRVGTTSKNKXXXX 235
S L+ +++D TG S+GYGFV F ++ + Q A+ MQG LNGR +R+ +K
Sbjct: 187 SYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRDNNNN 246
Query: 236 XXXXXXXXXXXXXXXRFXXXXXXXXXXXXXXXXXXXXXXXXHISTPTSQATPANS-GMLQ 294
F +++ S+ P +S GM
Sbjct: 247 NNYQQRRNYGNNNRGGF-----RQYNSNNNNNMNMGMNMNMNMNMNNSRGMPPSSMGMPI 301
Query: 295 SKFSYPVLQQPSLSQ------------------FTDPNNTTVFIGGLSTLITEDELRSYF 336
P QP SQ P TT +IG + TE +L F
Sbjct: 302 GAMPLPSQGQPQQSQTIGLPPQVNPQAVDHIIRSAPPRVTTAYIGNIPHFATEADLIPLF 361
Query: 337 QPFGQIVYVKIPVGKGCGFVQYVDRISAETAISKMQGFPIGNSRIRLSWGR 387
Q FG I+ K KGC F++Y A I + FP +R WG+
Sbjct: 362 QNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 412
>At5g54900 [R] KOG0118 FOG: RRM domain
Length = 390
Score = 108 bits (269), Expect = 3e-23
Identities = 67/183 (36%), Positives = 97/183 (52%), Gaps = 14/183 (7%)
Query: 50 GPIQNSTQLYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVE 109
G + L++GDL EN I S+++ GE K+I++ +S GY F+E
Sbjct: 54 GSASDVKSLWIGDLQQWMDENYIMSVFAQSGEAT-SAKVIRNKLTGQSE-----GYGFIE 107
Query: 110 FPNQMAASNALMK-SGLRVPMDSNYALKLNWASFATAP------GSEFTLFVGDLAPNVT 162
F + A L +G +P + +LNWA G + T+FVGDLAP VT
Sbjct: 108 FVSHSVAERVLQTYNGAPMP-STEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVT 166
Query: 163 EAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNGRAI 222
+ L + F + Y S AK+V D+ TG SKGYGFV+F +E EQ RA+ EM G + + R +
Sbjct: 167 DYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPM 226
Query: 223 RVG 225
R+G
Sbjct: 227 RIG 229
Score = 103 bits (257), Expect = 7e-22
Identities = 53/110 (48%), Positives = 72/110 (65%), Gaps = 10/110 (9%)
Query: 287 PANSGMLQSKFSYPVLQQPSLSQFT--------DPNNTTVFIGGLSTLITEDELRSYFQP 338
P G +K + P+ QP++ Q T DPNNTT+F+GGL +T+DEL+S F
Sbjct: 225 PMRIGPAANKNALPM--QPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQ 282
Query: 339 FGQIVYVKIPVGKGCGFVQYVDRISAETAISKMQGFPIGNSRIRLSWGRS 388
FG++++VKIP GK CGFVQY ++ SAE A+S + G +G IRLSWGRS
Sbjct: 283 FGELLHVKIPPGKRCGFVQYANKASAEHALSVLNGTQLGGQSIRLSWGRS 332
>At1g47500 [R] KOG0118 FOG: RRM domain
Length = 434
Score = 108 bits (269), Expect = 3e-23
Identities = 69/187 (36%), Positives = 108/187 (56%), Gaps = 15/187 (8%)
Query: 53 QNSTQLYMGDLNPDWTENDIKSIWSMLGEPN-VQVKLIKSSNPNKSHAVNNSGYCFVEFP 111
+N T +++GDL E + S ++ E V +K+I++ H ++ GY FVEF
Sbjct: 101 ENKT-IWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNK-----HNGSSEGYGFVEFE 154
Query: 112 NQMAASNALMK-SGLRVPMDSNYALKLNWASFATAP------GSEFTLFVGDLAPNVTEA 164
+ A L + +G +P +++ +LNWASF+T G + ++FVGDLAP+V++A
Sbjct: 155 SHDVADKVLQEFNGAPMP-NTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDA 213
Query: 165 QLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNGRAIRV 224
L E F +Y S AK+V D TG SKGYGFV+F +E E+ +A+ EM G + RA+R+
Sbjct: 214 LLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRI 273
Query: 225 GTTSKNK 231
G + K
Sbjct: 274 GPATPRK 280
Score = 97.4 bits (241), Expect = 5e-20
Identities = 52/108 (48%), Positives = 70/108 (64%), Gaps = 9/108 (8%)
Query: 285 ATPANSGMLQSKFSYPVLQQPSLSQFT----DPNNTTVFIGGLSTLITEDELRSYFQPFG 340
ATP + Q + Y PS FT D NTT+F+GGL + +T+++L+ F FG
Sbjct: 276 ATPRKTNGYQQQGGY----MPS-GAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFG 330
Query: 341 QIVYVKIPVGKGCGFVQYVDRISAETAISKMQGFPIGNSRIRLSWGRS 388
+IV VKIPVGKGCGFVQ+V+R +AE A+ K+ G IG +RLSWGR+
Sbjct: 331 EIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRN 378
Score = 52.0 bits (123), Expect = 3e-06
Identities = 52/194 (26%), Positives = 86/194 (43%), Gaps = 32/194 (16%)
Query: 58 LYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFP------ 111
+++GDL PD ++ + +S K++ +N +S GY FV F
Sbjct: 201 IFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRS-----KGYGFVRFGDENERT 255
Query: 112 ------NQMAASNALMKSGLRVPMDSN-YALKLNW---ASFATAPGSEF--TLFVGDLAP 159
N + S+ M+ G P +N Y + + +F + G T+FVG L
Sbjct: 256 KAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDS 315
Query: 160 NVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNG 219
+VT+ L + F S + ++ KI V KG GFV+FVN + AL ++ GT +
Sbjct: 316 SVTDEDLKQPF-SEFGEIVSVKIP------VGKGCGFVQFVNRPNAEEALEKLNGTVIGK 368
Query: 220 RAIRV--GTTSKNK 231
+ +R+ G NK
Sbjct: 369 QTVRLSWGRNPANK 382
>Hs13435394 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 265
Score = 107 bits (268), Expect = 4e-23
Identities = 83/296 (28%), Positives = 129/296 (43%), Gaps = 70/296 (23%)
Query: 101 NNSGYCFVEFPNQMAASNALMKSGLRVPMDSNYALKLNWASFATAPGSE-------FTLF 153
+N YCFVEF A+ AL R + +K+NWA T P S+ F +F
Sbjct: 7 SNDPYCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWA---TTPSSQKKDTSNHFHVF 61
Query: 154 VGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQ 213
VGDL+P +T + F + + +A++V D TG SKGYGFV F N+++ + A+V M
Sbjct: 62 VGDLSPEITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 120
Query: 214 GTFLNGRAIRVGTTSKNKXXXXXXXXXXXXXXXXXXXRFXXXXXXXXXXXXXXXXXXXXX 273
G +L GR IR ++
Sbjct: 121 GQWLGGRQIRTNWATR-------------------------------------------- 136
Query: 274 XXXHISTPTSQATPANSGMLQSKFSYPVLQQPSLSQFTDPNNTTVFIGGLSTLITEDELR 333
P ++T N+ Q +F V Q + P N TV+ GG+++ +T+ +R
Sbjct: 137 -----KPPAPKSTQENN-TKQLRFEDVVNQ-------SSPKNCTVYCGGIASGLTDQLMR 183
Query: 334 SYFQPFGQIVYVKIPVGKGCGFVQYVDRISAETAISKMQGFPIGNSRIRLSWGRSA 389
F PFGQI+ +++ KG FV++ SA AI + G I ++ WG+ +
Sbjct: 184 QTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 239
Score = 55.5 bits (132), Expect = 2e-07
Identities = 48/192 (25%), Positives = 84/192 (43%), Gaps = 37/192 (19%)
Query: 54 NSTQLYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPNQ 113
N +++GDL+P+ T DIKS ++ G+ + +++K KS GY FV F N+
Sbjct: 56 NHFHVFVGDLSPEITTEDIKSAFAPFGKIS-DARVVKDMATGKS-----KGYGFVSFYNK 109
Query: 114 MAASNALMKSGLRVPMDSNYALKLNWASFAT-APGS---------------------EFT 151
+ A NA++ G + ++ NWA+ AP S T
Sbjct: 110 LDAENAIVHMGGQ--WLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCT 167
Query: 152 LFVGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVE 211
++ G +A +T+ QL S + + ++ + KGY FV+F A+V
Sbjct: 168 VYCGGIASGLTD-QLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVS 220
Query: 212 MQGTFLNGRAIR 223
+ GT + G ++
Sbjct: 221 VNGTTIEGHVVK 232
>Hs11863163 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 386
Score = 105 bits (263), Expect = 1e-22
Identities = 95/348 (27%), Positives = 144/348 (41%), Gaps = 89/348 (25%)
Query: 58 LYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPNQMAAS 117
LY+G+L+ D TE I ++S +G P K+I + N YCFVEF A+
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIG-PCKNCKMIMDT-------AGNDPYCFVEFHEHRHAA 60
Query: 118 NALMKSGLRVPMDSNYALKLNWASFATAPGSE------------------FTLFVGDLAP 159
AL R M +K+NWA T P S+ F +FVGDL+P
Sbjct: 61 AALAAMNGRKIMGKE--VKVNWA---TTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSP 115
Query: 160 NVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNG 219
+T + F + + +A++V D TG SKGYGFV F N+ + + A+ +M G +L G
Sbjct: 116 QITTEDIKAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG 174
Query: 220 RAIRVGTTSKNKXXXXXXXXXXXXXXXXXXXRFXXXXXXXXXXXXXXXXXXXXXXXXHIS 279
R IR ++
Sbjct: 175 RQIRTNWATRK------------------------------------------------- 185
Query: 280 TPTSQATPANSGMLQSKFSYPVLQQPSLSQFTDPNNTTVFIGGLSTLITEDELRSYFQPF 339
P + + S Q + V+ Q S S T V+ GG+++ +TE +R F PF
Sbjct: 186 -PPAPKSTYESNTKQLSYD-EVVNQSSPSNCT------VYCGGVTSGLTEQLMRQTFSPF 237
Query: 340 GQIVYVKIPVGKGCGFVQYVDRISAETAISKMQGFPIGNSRIRLSWGR 387
GQI+ +++ KG FV++ SA AI + G I ++ WG+
Sbjct: 238 GQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGK 285
Score = 54.3 bits (129), Expect = 5e-07
Identities = 48/193 (24%), Positives = 83/193 (42%), Gaps = 37/193 (19%)
Query: 53 QNSTQLYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPN 112
Q+ +++GDL+P T DIK+ ++ G + +++K KS GY FV F N
Sbjct: 103 QDHFHVFVGDLSPQITTEDIKAAFAPFGRIS-DARVVKDMATGKS-----KGYGFVSFFN 156
Query: 113 QMAASNALMKSGLRVPMDSNYALKLNWASFAT-APGSEF--------------------- 150
+ A NA+ + G + ++ NWA+ AP S +
Sbjct: 157 KWDAENAIQQMGGQ--WLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNC 214
Query: 151 TLFVGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALV 210
T++ G + +TE QL S + + ++ D KGY FV+F + A+V
Sbjct: 215 TVYCGGVTSGLTE-QLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSHESAAHAIV 267
Query: 211 EMQGTFLNGRAIR 223
+ GT + G ++
Sbjct: 268 SVNGTTIEGHVVK 280
>At1g47490 [R] KOG0118 FOG: RRM domain
Length = 432
Score = 105 bits (262), Expect = 2e-22
Identities = 67/186 (36%), Positives = 103/186 (55%), Gaps = 13/186 (6%)
Query: 53 QNSTQLYMGDLNPDWTENDIKSIWSMLGEPN-VQVKLIKSSNPNKSHAVNNSGYCFVEFP 111
+N T +++GDL+ E + S ++ E V VK+I++ N S GY FVEF
Sbjct: 99 ENKT-IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSE-----GYGFVEFE 152
Query: 112 NQMAASNALMKSGLRVPMDSNYALKLNWASFATAP------GSEFTLFVGDLAPNVTEAQ 165
+ A L + +++ +LNWASF+T G + ++FVGDL+P+V++
Sbjct: 153 SHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNL 212
Query: 166 LFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNGRAIRVG 225
L E F +Y S AK+V D TG SKGYGFV+F +E E+ +A+ EM G + RA+R+G
Sbjct: 213 LHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIG 272
Query: 226 TTSKNK 231
+ K
Sbjct: 273 PATPRK 278
Score = 96.7 bits (239), Expect = 9e-20
Identities = 43/77 (55%), Positives = 59/77 (75%)
Query: 312 DPNNTTVFIGGLSTLITEDELRSYFQPFGQIVYVKIPVGKGCGFVQYVDRISAETAISKM 371
D NTT+F+GGL + +T+++L+ F FG+IV VKIPVGKGCGFVQ+V+R +AE A+ K+
Sbjct: 300 DIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKL 359
Query: 372 QGFPIGNSRIRLSWGRS 388
G IG +RLSWGR+
Sbjct: 360 NGTVIGKQTVRLSWGRN 376
Score = 54.3 bits (129), Expect = 5e-07
Identities = 52/194 (26%), Positives = 86/194 (43%), Gaps = 32/194 (16%)
Query: 58 LYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFP------ 111
+++GDL+PD ++N + +S K++ +N +S GY FV F
Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRS-----KGYGFVRFGDENERT 253
Query: 112 ------NQMAASNALMKSGLRVPMDSN-YALKLNWASFATAPGSE-----FTLFVGDLAP 159
N + S+ M+ G P +N Y + + T E T+FVG L
Sbjct: 254 KAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDS 313
Query: 160 NVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNG 219
+VT+ L + F + + ++ KI V KG GFV+FVN + AL ++ GT +
Sbjct: 314 SVTDEDLKQPF-NEFGEIVSVKIP------VGKGCGFVQFVNRPNAEEALEKLNGTVIGK 366
Query: 220 RAIRV--GTTSKNK 231
+ +R+ G NK
Sbjct: 367 QTVRLSWGRNPANK 380
>At1g11650 [R] KOG0118 FOG: RRM domain
Length = 405
Score = 103 bits (257), Expect = 7e-22
Identities = 64/179 (35%), Positives = 97/179 (53%), Gaps = 11/179 (6%)
Query: 58 LYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPNQMAAS 117
L++GDL EN + ++ GE V K+I++ + GY F+EF + AA
Sbjct: 64 LWIGDLQYWMDENFLYGCFAHTGEM-VSAKVIRNKQTGQVE-----GYGFIEFASHAAAE 117
Query: 118 NALMK-SGLRVPMDSNYALKLNWASFATAP----GSEFTLFVGDLAPNVTEAQLFELFIS 172
L + +P + +LNWAS ++ ++T+FVGDLA +VT+ L E F +
Sbjct: 118 RVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRA 177
Query: 173 RYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNGRAIRVGTTSKNK 231
Y S AK+V D+ TG +KGYGFV+F +E EQ RA+ EM G + R +R+G + K
Sbjct: 178 SYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKK 236
Score = 96.7 bits (239), Expect = 9e-20
Identities = 41/77 (53%), Positives = 57/77 (73%)
Query: 312 DPNNTTVFIGGLSTLITEDELRSYFQPFGQIVYVKIPVGKGCGFVQYVDRISAETAISKM 371
DPNNTTVF+GGL +T+D L++ F +G+IV+VKIP GK CGFVQ+ ++ AE A+ +
Sbjct: 257 DPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEKSCAEEALRML 316
Query: 372 QGFPIGNSRIRLSWGRS 388
G +G + +RLSWGRS
Sbjct: 317 NGVQLGGTTVRLSWGRS 333
>At3g14100 [R] KOG0118 FOG: RRM domain
Length = 427
Score = 103 bits (256), Expect = 1e-21
Identities = 94/336 (27%), Positives = 149/336 (43%), Gaps = 65/336 (19%)
Query: 58 LYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPNQMAAS 117
+Y+G+++ TE ++ I++ G P KLI+ + S Y FV + ++ +A+
Sbjct: 61 VYVGNIHTQVTEPLLQEIFTSTG-PVESSKLIRK---------DKSSYGFVHYFDRRSAA 110
Query: 118 NALMKSGLRVPMDSNYALKLNWASFATAP----GSEFTLFVGDLAPNVTEAQLFELFISR 173
A++ R +K+NWA +AT S F +FVGDL+P VT+A L++ F S
Sbjct: 111 LAILSLNGRHLFGQ--PIKVNWA-YATGQREDTSSHFNIFVGDLSPEVTDATLYQSF-SV 166
Query: 174 YSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNGRAIRVGTTSKNKXX 233
+SS +A++++DQ TG S+G+GFV F N+ + Q A+ EM G +L+ R IR +K
Sbjct: 167 FSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWATKG--- 223
Query: 234 XXXXXXXXXXXXXXXXXRFXXXXXXXXXXXXXXXXXXXXXXXXHISTPTSQATPANSGML 293
++ TP N+
Sbjct: 224 -------------------ATSGDDKLSSDGKSVVELTTGSSEDGKETLNEETPENN--- 261
Query: 294 QSKFSYPVLQQPSLSQFTDPNNTTVFIGGLSTLITEDELRSYFQPFGQ--IVYVKIPVGK 351
SQF TTV++G L+ +T+ +L YF G I V++ K
Sbjct: 262 --------------SQF-----TTVYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQRDK 302
Query: 352 GCGFVQYVDRISAETAISKMQGFP-IGNSRIRLSWG 386
G GFV+Y A AI P + N +I+ SWG
Sbjct: 303 GFGFVRYNTHPEAALAIQMGNTQPYLFNRQIKCSWG 338
>SPBC1289.12 [R] KOG0118 FOG: RRM domain
Length = 352
Score = 97.4 bits (241), Expect = 5e-20
Identities = 85/282 (30%), Positives = 124/282 (43%), Gaps = 67/282 (23%)
Query: 106 CFVEFPNQMAASNALMKSGLRVPMDSNYALKLNWASFATAPGSEFTLFVGDLAPNVTEAQ 165
C +EF +Q AA NAL + + + N + L+ P S + LF+ ++ P V+E
Sbjct: 31 CCIEFESQDAARNALERQSTQRLISGN-PISLDVVPEWQKP-SYYMLFISNIDPEVSEND 88
Query: 166 LFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNGRAIRVG 225
+ LF RY+ ++A+++ G S F+ NE + Q A VEMQG F R+I V
Sbjct: 89 IKYLF-QRYNF-ISARVL-RCVDGTSTSIAFIWLANESDIQNAQVEMQGAFCLKRSILVH 145
Query: 226 TTSKNKXXXXXXXXXXXXXXXXXXXRFXXXXXXXXXXXXXXXXXXXXXXXXHISTPTSQA 285
+ +K ++S+P
Sbjct: 146 SVKSDKNT-------------------------------------------YLSSPGFYG 162
Query: 286 TPANSGMLQSKFSYPVLQQPSLSQFTDPNNTTVFIGGLSTLITEDELRSYFQPFGQIVYV 345
TP QP L+QFTDPNNT V++ L IT ELRSYF FG+I+Y
Sbjct: 163 TP----------------QP-LNQFTDPNNTAVYVHQLPENITTQELRSYFLHFGEILYT 205
Query: 346 KIPVGKGCGFVQYVDRISAETAISKMQGFPIGNSRIRLSWGR 387
+ V G + + R AE AI++M FP+ RI+LSW R
Sbjct: 206 Q--VNNNSGRIVFAQRYFAEQAINEMNNFPLHGVRIQLSWAR 245
>At1g54080 [R] KOG0118 FOG: RRM domain
Length = 426
Score = 90.5 bits (223), Expect = 6e-18
Identities = 62/176 (35%), Positives = 99/176 (56%), Gaps = 18/176 (10%)
Query: 58 LYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPNQMAAS 117
+Y G+++ TE ++ I++ G P KLI+ + S Y FV + ++ AS
Sbjct: 65 VYAGNIHTQVTEILLQEIFASTG-PIESCKLIRK---------DKSSYGFVHYFDRRCAS 114
Query: 118 NALMKSGLRVPMDSNYALKLNWASFATAP----GSEFTLFVGDLAPNVTEAQLFELFISR 173
A+M R +K+NWA +AT S F +FVGDL+P VT+A LF+ F S
Sbjct: 115 MAIMTLNGRHIFGQ--PMKVNWA-YATGQREDTSSHFNIFVGDLSPEVTDAALFDSF-SA 170
Query: 174 YSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNGRAIRVGTTSK 229
++S +A++++DQ TG S+G+GFV F N+ + Q A+ EM G +++ R IR +K
Sbjct: 171 FNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATK 226
>CE06396 [R] KOG0118 FOG: RRM domain
Length = 392
Score = 85.9 bits (211), Expect = 2e-16
Identities = 56/163 (34%), Positives = 86/163 (52%), Gaps = 10/163 (6%)
Query: 58 LYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPNQMAAS 117
L++GD+ DWTE + +++ G +VK + + K GYCF+EF A
Sbjct: 91 LWIGDVPTDWTEETLSQVFTECGHAPYKVKRVYVKDELK-------GYCFIEFITFDEAR 143
Query: 118 NALMK-SGLRVPMDSNYALKLNWASFATAPGSEFTLFVGDLAPNVTEAQLFELFISRYSS 176
L +G R+P + L +A+ + P SEF L V + ++ +A+L+ +F +Y S
Sbjct: 144 QTLYDLNGNRIPGFKDIRFNLCFANDSYNPNSEFNLHVSSVPDDMADAELYRIF-DKYQS 202
Query: 177 TLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNG 219
AK+ F G SKG GFV+F N+ +QQ ALVEM T + G
Sbjct: 203 CRGAKM-FRFVDGSSKGSGFVRFGNQTDQQMALVEMHRTKVGG 244
>At1g17370 [R] KOG0118 FOG: RRM domain
Length = 419
Score = 82.8 bits (203), Expect = 1e-15
Identities = 58/176 (32%), Positives = 96/176 (53%), Gaps = 18/176 (10%)
Query: 58 LYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPNQMAAS 117
+Y+G+++ TE ++ +++ G P KLI+ S Y FV + ++ +A
Sbjct: 56 VYVGNIHIQVTEPLLQEVFAGTG-PVESCKLIRKEK---------SSYGFVHYFDRRSAG 105
Query: 118 NALMKSGLRVPMDSNYALKLNWASFATAP----GSEFTLFVGDLAPNVTEAQLFELFISR 173
A++ R +K+NWA +A+ S F +FVGDL+P VT+A LF F S
Sbjct: 106 LAILSLNGRHLFGQ--PIKVNWA-YASGQREDTSSHFNIFVGDLSPEVTDAMLFTCF-SV 161
Query: 174 YSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNGRAIRVGTTSK 229
Y + +A++++DQ TG S+G+GFV F N+ + Q A+ E+ G +L R IR +K
Sbjct: 162 YPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWATK 217
>7301090 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 464
Score = 82.8 bits (203), Expect = 1e-15
Identities = 57/180 (31%), Positives = 93/180 (51%), Gaps = 23/180 (12%)
Query: 58 LYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPNQMAAS 117
LY+G+L+ +E+ + +++S +G P K+I+ N Y F+E+ N AA+
Sbjct: 9 LYVGNLDSSVSEDLLIALFSTMG-PVKSCKIIREPG--------NDPYAFIEYSNYQAAT 59
Query: 118 NALMKSGLRVPMDSNYALKLNWASFATAPG--------SEFTLFVGDLAPNVTEAQLFEL 169
AL R+ ++ +K+NWA T+PG S +FVGDL+P + L E
Sbjct: 60 TALTAMNKRLFLEKE--IKVNWA---TSPGNQPKTDISSHHHIFVGDLSPEIETETLREA 114
Query: 170 FISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNGRAIRVGTTSK 229
F + + N +IV D T SKGY FV FV + E + A+ M G ++ R+IR +++
Sbjct: 115 F-APFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWSTR 173
>7295704 [R] KOG0118 FOG: RRM domain
Length = 320
Score = 81.3 bits (199), Expect = 4e-15
Identities = 56/152 (36%), Positives = 91/152 (59%), Gaps = 11/152 (7%)
Query: 68 TENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPNQMAASNALMK-SGLR 126
TEN I + + +GE V+L+++ + +GYCFV F + A +A+ K +G
Sbjct: 2 TENFIIAAFRKMGEDPTTVRLMRNKYTGEP-----AGYCFVNFISDDHALDAMHKLNGKP 56
Query: 127 VPMDSNYA-LKLNWASFA-TAPGSE--FTLFVGDLAPNVTEAQLFELFISRYSSTLNAKI 182
+P + +LN AS + PG+E F+++VGDL+ +V + QL+++F S+++S AK+
Sbjct: 57 IPGTNPIVRFRLNSASNSYKLPGNEREFSVWVGDLSSDVDDYQLYKVFSSKFTSIKTAKV 116
Query: 183 VFDQFTGVSKGYGFVKFVNEMEQQRALVEMQG 214
+ D G SKGYGFV+F E EQ+ AL +M G
Sbjct: 117 ILDSL-GFSKGYGFVRFGIEDEQKSALYDMNG 147
>CE27708 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 408
Score = 79.7 bits (195), Expect = 1e-14
Identities = 57/181 (31%), Positives = 87/181 (47%), Gaps = 24/181 (13%)
Query: 58 LYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPNQMAAS 117
LY+G+L+ TE+ I ++++ +G + SN Y FVEF + AS
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSN---------DPYAFVEFSDHGQAS 98
Query: 118 NALMKSGLRVPMDSNYALKLNWASFATAPGSE---------FTLFVGDLAPNVTEAQLFE 168
AL R+ +D +K+NWA PG + F +FVGDL+ V +L E
Sbjct: 99 QALQTMNKRLLLDRE--MKVNWA---VEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLRE 153
Query: 169 LFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNGRAIRVGTTS 228
F + +AK++ D T SKGYGFV + E +RA+ +M G +L R IR +
Sbjct: 154 AF-QPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWAT 212
Query: 229 K 229
+
Sbjct: 213 R 213
Score = 57.8 bits (138), Expect = 5e-08
Identities = 29/78 (37%), Positives = 50/78 (63%), Gaps = 1/78 (1%)
Query: 311 TDPNNTTVFIGGLSTLITEDELRSYFQPFGQIVYVKIPVGKGCGFVQYVDRISAETAISK 370
T +NT+V++G +++L TEDE+R F FG+I V+I +G FV++ ++ +A AI +
Sbjct: 236 TSGDNTSVYVGNIASL-TEDEIRQGFASFGRITEVRIFKMQGYAFVKFDNKDAAAKAIVQ 294
Query: 371 MQGFPIGNSRIRLSWGRS 388
M +G +R SWG++
Sbjct: 295 MNNQDVGGQLVRCSWGKT 312
Score = 54.3 bits (129), Expect = 5e-07
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Query: 294 QSKFSYPVLQQPSLSQFTDPNNTTVFIGGLSTLITEDELRSYFQPFGQIVYVKI------ 347
+ K ++ V S+ + VF+G LS+ + +LR FQPFG + K+
Sbjct: 113 EMKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNT 172
Query: 348 PVGKGCGFVQYVDRISAETAISKMQGFPIGNSRIRLSW 385
KG GFV Y R AE AI +M G +G IR +W
Sbjct: 173 TKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNW 210
>Hs11386163 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 380
Score = 71.6 bits (174), Expect = 3e-12
Identities = 78/346 (22%), Positives = 143/346 (40%), Gaps = 31/346 (8%)
Query: 54 NSTQLYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPNQ 113
+ T L + L + T+ + +S++ +GE KL++ +S GY FV + +
Sbjct: 44 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIE-SCKLVRDKITGQS-----LGYGFVNYIDP 97
Query: 114 MAASNALMK-SGLRVPMDSNYALKLNWASFATAPGSEFTLFVGDLAPNVTEAQLFELFIS 172
A A+ +GLR+ + +K+++A ++A + L+V L +T+ +L +LF S
Sbjct: 98 KDAEKAINTLNGLRLQTKT---IKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF-S 153
Query: 173 RYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNGRAIRVGTTSKNKX 232
+Y + ++I+ DQ TGVS+G GF++F +E + A+ + G +G + N
Sbjct: 154 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNP 213
Query: 233 XXXXXXXXXXXXXXXXXXRFXXXXXXXXXXXXXXXXXXXXXXXXHIST---PTSQATPAN 289
R+ + + P S +P
Sbjct: 214 SQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLLNMAYGVKRLMSGPVPPSACSPRF 273
Query: 290 SGMLQSKFSYPVLQQPSLSQFTDPNNT----TVFIGGLSTLITEDELRSYFQPFGQIVYV 345
S + + SL P +T +F+ LS E L F PFG + V
Sbjct: 274 SPI-------TIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNV 326
Query: 346 KI------PVGKGCGFVQYVDRISAETAISKMQGFPIGNSRIRLSW 385
K+ KG GFV + A AI+ + G+ +G+ +++S+
Sbjct: 327 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 372
>CE21988 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 434
Score = 69.7 bits (169), Expect = 1e-11
Identities = 50/181 (27%), Positives = 84/181 (45%), Gaps = 21/181 (11%)
Query: 58 LYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPNQMAAS 117
L++ +L+P T+ + ++++ +G ++ K+I N Y FVEF + A+
Sbjct: 42 LFVANLDPAITDEFLATLFNQIGAV-MKAKIIFEGL--------NDPYAFVEFSDHNQAT 92
Query: 118 NALMKSGLRVPMDSNYALKLNWASFATAPGSE---------FTLFVGDLAPNVTEAQLFE 168
AL R ++ + + WA PG F +FVGDL + +L E
Sbjct: 93 LALQSHNGRELLEKE--MHVTWAFEPREPGENRSKPETSRHFHVFVGDLCSEIDSTKLRE 150
Query: 169 LFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNGRAIRVGTTS 228
F+ ++ AKI+ D T KGYGFV + + +RA+ EM G +L R IR +
Sbjct: 151 AFV-KFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTIRTNWAT 209
Query: 229 K 229
+
Sbjct: 210 R 210
Score = 51.6 bits (122), Expect = 3e-06
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 314 NNTTVFIGGLSTLITEDELRSYFQPFGQIVYVKIPVGKGCGFVQYVDRISAETAISKMQG 373
+NT+V++G ++ L EDE+R F FG I V+ +G FV++ + SA AI +M
Sbjct: 254 DNTSVYVGNIANL-GEDEIRRAFDRFGPINEVRTFKIQGYAFVKFETKESAARAIVQMNN 312
Query: 374 FPIGNSRIRLSWGRS 388
IG +R SWG+S
Sbjct: 313 ADIGGQIVRCSWGKS 327
>7295878 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 673
Score = 69.7 bits (169), Expect = 1e-11
Identities = 81/346 (23%), Positives = 139/346 (39%), Gaps = 37/346 (10%)
Query: 56 TQLYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPNQMA 115
T L + L ++++I+S++ GE KLI+ +S GY FV + Q
Sbjct: 110 TNLIVNYLPQTMSQDEIRSLFVSFGEVE-SCKLIRDKVTGQS-----LGYGFVNYVKQED 163
Query: 116 ASNALMK-SGLRVPMDSNYALKLNWASFATAPGSEFTLFVGDLAPNVTEAQLFELFISRY 174
A A+ +GLR+ N +K++ A ++ L+V L N+T++ L LF S Y
Sbjct: 164 AEKAINALNGLRL---QNKTIKVSIARPSSESIKGANLYVSGLPKNMTQSDLESLF-SPY 219
Query: 175 SSTLNAKIVFDQFT-----GVSKGYGFVKFVNEMEQQRALVEMQGTFLNGRAIRV----- 224
+ ++I+ D T G+SKG GF++F E RA+ E+ GT +
Sbjct: 220 GKIITSRILCDNITDEHAAGLSKGVGFIRFDQRFEADRAIKELNGTTPKNSTEPITVKFA 279
Query: 225 GTTSKNKXXXXXXXXXXXXXXXXXXXRFXXXXXXXXXXXXXXXXXXXXXXXXHISTPTSQ 284
S NK F S+ S+
Sbjct: 280 NNPSSNKNSMQPLAAYIAPQNTRGGRAF--PANAAAGAAAAAAAAAIHPNAGRYSSVISR 337
Query: 285 ATPANSGMLQSKFSYPVLQQPSLSQFTDPNNTTVFIGGLSTLITEDELRSYFQPFGQIVY 344
+P S ++ + ++Q +++ + +F+ L+ E+ L F PFG +
Sbjct: 338 YSPLTSDLITN----GMIQGNTIAS----SGWCIFVYNLAPDTEENVLWQLFGPFGAVQS 389
Query: 345 VKI------PVGKGCGFVQYVDRISAETAISKMQGFPIGNSRIRLS 384
VK+ KG GFV + A AI + G+ +GN ++L+
Sbjct: 390 VKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSLNGYTLGNRVLQLA 435
>Hs4503553 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 359
Score = 67.4 bits (163), Expect = 6e-11
Identities = 71/342 (20%), Positives = 136/342 (39%), Gaps = 31/342 (9%)
Query: 54 NSTQLYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPNQ 113
+ T L + L + T+++ KS++ +G+ KL++ + + GY FV +P+
Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLFGSIGDIE-SCKLVRDKITGR-----DLGYGFVNYPDP 90
Query: 114 MAASNALMK-SGLRVPMDSNYALKLNWASFATAPGSEFTLFVGDLAPNVTEAQLFELFIS 172
A A+ +GL++ + +K+++A ++A + L+V L +++ ++ +LF S
Sbjct: 91 NDADKAINTLNGLKLQTKT---IKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLF-S 146
Query: 173 RYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNGRAIRVGTTSKNKX 232
+Y + ++I+ DQ TGVS+G GF++F +E + A+ + G G A + N
Sbjct: 147 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNP 206
Query: 233 XXXXXXXXXXXXXXXXXXRFXXXXXXXXXXXXXXXXXXXXXXXXHISTPTSQATPANSGM 292
R+ S +G+
Sbjct: 207 SQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGV 266
Query: 293 LQSKFSYPVLQQPSLSQFTDPNNTTVFIGGLSTLITEDELRSYFQPFGQIVYVKI----- 347
S + +F+ LS E L F PFG + VK+
Sbjct: 267 GLSGGA--------------AGGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFT 312
Query: 348 -PVGKGCGFVQYVDRISAETAISKMQGFPIGNSRIRLSWGRS 388
KG GFV + A AI+ + G+ + +++S+ S
Sbjct: 313 TNKCKGFGFVTMTNYDEAAMAIASLNGYRLAERVLQVSFKTS 354
>At1g22760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 660
Score = 66.6 bits (161), Expect = 1e-10
Identities = 47/171 (27%), Positives = 81/171 (46%), Gaps = 9/171 (5%)
Query: 55 STQLYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPNQM 114
++ LY GDL+P TE + ++ + V V++ + N + GY ++ F N
Sbjct: 48 NSSLYAGDLDPKVTEAHLFDLFKHVANV-VSVRVCRDQNRR------SLGYAYINFSNPN 100
Query: 115 AASNALMKSGLRVPMDSNYALKLNWASFATAPGSEFTLFVGDLAPNVTEAQLFELFISRY 174
A A+ D + L+ +T + +F+ +L ++ LFE F S +
Sbjct: 101 DAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETF-SSF 159
Query: 175 SSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNGRAIRVG 225
+ L+ K+ D TG SKGYGFV+F E Q A+ ++ G +N + + VG
Sbjct: 160 GTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVG 209
>Hs4758262 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 359
Score = 66.2 bits (160), Expect = 1e-10
Identities = 45/162 (27%), Positives = 88/162 (53%), Gaps = 11/162 (6%)
Query: 54 NSTQLYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPNQ 113
+ T L + L + T+ ++KS++ +GE KL++ +S GY FV + +
Sbjct: 37 SKTNLIVNYLPQNMTQEELKSLFGSIGEIE-SCKLVRDKITGQS-----LGYGFVNYIDP 90
Query: 114 MAASNALMK-SGLRVPMDSNYALKLNWASFATAPGSEFTLFVGDLAPNVTEAQLFELFIS 172
A A+ +GLR+ + +K+++A ++A + L+V L +T+ +L +LF S
Sbjct: 91 KDAEKAINTLNGLRLQTKT---IKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF-S 146
Query: 173 RYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQG 214
+Y + ++I+ DQ TG+S+G GF++F +E + A+ + G
Sbjct: 147 QYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
>At1g71770 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 668
Score = 65.5 bits (158), Expect = 2e-10
Identities = 46/171 (26%), Positives = 81/171 (46%), Gaps = 9/171 (5%)
Query: 55 STQLYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPNQM 114
++ LY+GDL+P E+ + +++ QV + + + + GY +V F N
Sbjct: 44 NSSLYVGDLDPSVNESHLLDLFN-------QVAPVHNLRVCRDLTHRSLGYAYVNFANPE 96
Query: 115 AASNALMKSGLRVPMDSNYALKLNWASFATAPGSEFTLFVGDLAPNVTEAQLFELFISRY 174
AS A+ D + L+ +T + +F+ +L ++ L+E F S +
Sbjct: 97 DASRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETF-SSF 155
Query: 175 SSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNGRAIRVG 225
+ L+ K+ D G SKGYGFV+F E Q A+ ++ G LN + + VG
Sbjct: 156 GTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVG 205
Score = 52.0 bits (123), Expect = 3e-06
Identities = 47/200 (23%), Positives = 92/200 (45%), Gaps = 29/200 (14%)
Query: 50 GPIQNSTQLYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVE 109
G + + T +Y+ +L + T++++K + G+ I S+ K + N+ + FV
Sbjct: 219 GAVPSFTNVYVKNLPKEITDDELKKTFGKYGD-------ISSAVVMKDQSGNSRSFGFVN 271
Query: 110 FPNQMAASNALMK-SGLRVPMDSNYALKLNWAS-----------------FATAPGSEFT 151
F + AA+ A+ K +G+ + D Y + S F GS
Sbjct: 272 FVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSN-- 329
Query: 152 LFVGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVE 211
L++ +L +V + +L E+F S Y + + K++ + G+S+G+GFV + N E A+ E
Sbjct: 330 LYLKNLDDSVNDEKLKEMF-SEYGNVTSCKVMMNS-QGLSRGFGFVAYSNPEEALLAMKE 387
Query: 212 MQGTFLNGRAIRVGTTSKNK 231
M G + + + V + +
Sbjct: 388 MNGKMIGRKPLYVALAQRKE 407
>Hs4505575 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 633
Score = 63.5 bits (153), Expect = 8e-10
Identities = 49/181 (27%), Positives = 80/181 (44%), Gaps = 9/181 (4%)
Query: 51 PIQNSTQLYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEF 110
P LY+GDL+PD TE + +S G P + +++ + +S GY +V F
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAG-PILSIRVCRDMITRRS-----LGYAYVNF 59
Query: 111 PNQMAASNALMKSGLRVPMDSNYALKLNWASFATAPGSEFTLFVGDLAPNVTEAQLFELF 170
A AL V + + + +F+ +L ++ L++ F
Sbjct: 60 QQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTF 119
Query: 171 ISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNGRAIRVGTTSKN 230
S + + L+ K+V D+ SKGYGFV F + +RA+ +M G LN R + VG
Sbjct: 120 -SAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 231 K 231
K
Sbjct: 177 K 177
Score = 55.5 bits (132), Expect = 2e-07
Identities = 41/134 (30%), Positives = 66/134 (48%), Gaps = 11/134 (8%)
Query: 102 NSGYCFVEFPNQMAASNALMKSGLRVPMD-----SNYALKLNWASFATAPGSEFT-LFVG 155
+ GY FV F Q AA A+ K + D + + + A EFT +++
Sbjct: 137 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIK 196
Query: 156 DLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGT 215
+ ++ + +L +LF L+ K++ D+ +G SKG+GFV F + Q+A+ EM G
Sbjct: 197 NFGEDMDDERLKDLF----GPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGK 251
Query: 216 FLNGRAIRVGTTSK 229
LNG+ I VG K
Sbjct: 252 ELNGKQIYVGRAQK 265
>Hs13569958 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 631
Score = 63.5 bits (153), Expect = 8e-10
Identities = 49/181 (27%), Positives = 82/181 (45%), Gaps = 9/181 (4%)
Query: 51 PIQNSTQLYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEF 110
P + LY+GDL+PD TE + +S G P + +++ + + S S Y +V F
Sbjct: 6 PSYPTASLYVGDLHPDVTEAMLYEKFSPAG-PILSIRICRDLITSGS-----SNYAYVNF 59
Query: 111 PNQMAASNALMKSGLRVPMDSNYALKLNWASFATAPGSEFTLFVGDLAPNVTEAQLFELF 170
+ A +AL V + + + +FV +L ++ L++
Sbjct: 60 QHTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDT- 118
Query: 171 ISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNGRAIRVGTTSKN 230
+S + + L+ +V D+ SKGYGFV F +RA+ +M G LNGR + VG
Sbjct: 119 VSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSR 176
Query: 231 K 231
K
Sbjct: 177 K 177
Score = 56.6 bits (135), Expect = 1e-07
Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 8/134 (5%)
Query: 102 NSGYCFVEFPNQMAASNALMK------SGLRVPMDSNYALKLNWASFATAPGSEFTLFVG 155
+ GY FV F AA A+ K +G +V + + K A +++
Sbjct: 137 SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIK 196
Query: 156 DLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGT 215
+ ++ + +L +LF ++ L+ K++ D+ +G SKG+GFV F + Q+A+ EM G
Sbjct: 197 NFGEDMDDERLKDLF-GKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGK 254
Query: 216 FLNGRAIRVGTTSK 229
LNG+ I VG K
Sbjct: 255 ELNGKQIYVGRAQK 268
>At3g16380 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 537
Score = 62.4 bits (150), Expect = 2e-09
Identities = 52/172 (30%), Positives = 88/172 (50%), Gaps = 16/172 (9%)
Query: 58 LYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPNQMAAS 117
LY+GDL+PD TE D+ +S L P V V L ++S KS Y ++ F + +AS
Sbjct: 23 LYVGDLSPDVTEKDLIDKFS-LNVPVVSVHLCRNSVTGKSMC-----YAYINFDSPFSAS 76
Query: 118 NALMKSGLRVPMDSNYALKLNWA----SFATAPGSEF-TLFVGDLAPNVTEAQLFELFIS 172
NA+ + L A+++ W+ ++ + F L+V +L ++T + L +F
Sbjct: 77 NAMTR--LNHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFCP 134
Query: 173 RYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNGRAIRV 224
+ S L+ K+V + G SKG+GFV+F E A + G+ + G+ + V
Sbjct: 135 -FGSILSCKVV--EENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFV 183
>CE07989 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 270
Score = 62.0 bits (149), Expect = 2e-09
Identities = 48/182 (26%), Positives = 85/182 (46%), Gaps = 31/182 (17%)
Query: 58 LYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPNQMAAS 117
+++GDL+ D + +KS ++ GE + + K+I+ KS GY FV FPN+ A
Sbjct: 29 VFVGDLSKDVSNELLKSTFTKFGEVS-EAKVIRDVQTQKS-----KGYGFVSFPNKQNAE 82
Query: 118 NALMKSGLRVPMDSNYALKLNWAS----------------FATAPGSEFTLFVGDLAPNV 161
NA+ +G+ A++ NWA+ F + +++VG+++
Sbjct: 83 NAI--AGMNGKWIGKRAVRTNWAARKNSEENRDKLTFEQVFNSTKADNTSVYVGNISQQT 140
Query: 162 TEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNGRA 221
T+A L +LF S Y +I Q Y FV++ + +A++EM G + G
Sbjct: 141 TDADLRDLF-STYGDIAEVRIFKTQ------RYAFVRYEKKECATKAIMEMNGKEMAGNQ 193
Query: 222 IR 223
+R
Sbjct: 194 VR 195
Score = 55.8 bits (133), Expect = 2e-07
Identities = 31/92 (33%), Positives = 48/92 (51%), Gaps = 1/92 (1%)
Query: 138 NWASFATAPGSEFTLFVGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFV 197
N SF F +FVGDL+ +V+ L F +++ AK++ D T SKGYGFV
Sbjct: 15 NAISFLCFFSEHFHVFVGDLSKDVSNELLKSTF-TKFGEVSEAKVIRDVQTQKSKGYGFV 73
Query: 198 KFVNEMEQQRALVEMQGTFLNGRAIRVGTTSK 229
F N+ + A+ M G ++ RA+R ++
Sbjct: 74 SFPNKQNAENAIAGMNGKWIGKRAVRTNWAAR 105
Score = 55.1 bits (131), Expect = 3e-07
Identities = 27/78 (34%), Positives = 45/78 (57%)
Query: 311 TDPNNTTVFIGGLSTLITEDELRSYFQPFGQIVYVKIPVGKGCGFVQYVDRISAETAISK 370
T +NT+V++G +S T+ +LR F +G I V+I + FV+Y + A AI +
Sbjct: 124 TKADNTSVYVGNISQQTTDADLRDLFSTYGDIAEVRIFKTQRYAFVRYEKKECATKAIME 183
Query: 371 MQGFPIGNSRIRLSWGRS 388
M G + +++R SWGR+
Sbjct: 184 MNGKEMAGNQVRCSWGRT 201
>Hs17435151 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 487
Score = 61.2 bits (147), Expect = 4e-09
Identities = 42/135 (31%), Positives = 74/135 (54%), Gaps = 10/135 (7%)
Query: 102 NSGYCFVEFPNQMAASNAL------MKSGLRVPMDSNYALKLNWASFATAPGSEFT-LFV 154
+ GY FV F NQ AA A+ + G +V + + + + + + SEFT +++
Sbjct: 253 SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFV-GRFKNRKDREAELRSKASEFTNVYI 311
Query: 155 GDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQG 214
+ ++ + +L ++F S+Y TL+ K++ D +G SKG+GFV F + ++A+ EM G
Sbjct: 312 KNFGGDMDDERLKDVF-SKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEMNG 369
Query: 215 TFLNGRAIRVGTTSK 229
+NG+ I VG K
Sbjct: 370 RDINGQLIFVGRAQK 384
Score = 57.4 bits (137), Expect = 6e-08
Identities = 49/177 (27%), Positives = 84/177 (46%), Gaps = 15/177 (8%)
Query: 58 LYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPNQMAAS 117
LY+GDL+ D TE+ + +S +G P + +++ + +S GY +V F A
Sbjct: 129 LYVGDLHADVTEDLLFRKFSTVG-PVLSIRICRDQVTRRS-----LGYAYVNFLQLADAQ 182
Query: 118 NALMKSGLRVPMDSNYALKLNWA---SFATAPGSEFTLFVGDLAPNVTEAQLFELFISRY 174
AL + + +++L W+ ++ G +F+ +L ++ L+E F S +
Sbjct: 183 KAL--DTMNFDIIKGKSIRLMWSQRDAYLRRSGIG-NVFIKNLDKSIDNKTLYEHF-SAF 238
Query: 175 SSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNGRAIRVGTTSKNK 231
L++K++ D SKGY FV F N+ RA+ EM G L G + VG K
Sbjct: 239 GKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRK 293
>At1g60000 [R] KOG0118 FOG: RRM domain
Length = 258
Score = 61.2 bits (147), Expect = 4e-09
Identities = 55/187 (29%), Positives = 85/187 (45%), Gaps = 15/187 (8%)
Query: 51 PIQNSTQLYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEF 110
P +T+LY G+L + + I P + V+++ + + +S G+ FV
Sbjct: 80 PAAVNTKLYFGNLPYNVDSATLAQIIQDFANPEL-VEVLYNRDTGQSR-----GFAFVTM 133
Query: 111 PNQMAASNALMKSGLRVPMDSNYALKLNWASFATA------PGSEFTLFVGDLAPNVTEA 164
N + ++ L ALK+N+A P +E LFVG+L+ VT
Sbjct: 134 SNVEDCN--IIIDNLDGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSE 191
Query: 165 QLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNGRAIRV 224
L F + A++VFD TG S+GYGFV + ++ E + AL + G L GRAIRV
Sbjct: 192 SLAGAF-RECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRV 250
Query: 225 GTTSKNK 231
K
Sbjct: 251 NLAQGKK 257
>Hs4503551 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 326
Score = 60.8 bits (146), Expect = 5e-09
Identities = 41/160 (25%), Positives = 85/160 (52%), Gaps = 11/160 (6%)
Query: 56 TQLYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPNQMA 115
T L + L + T+++++S++S +GE KLI+ A ++ GY FV +
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVE-SAKLIRDKV-----AGHSLGYGFVNYVTAKD 73
Query: 116 ASNALMK-SGLRVPMDSNYALKLNWASFATAPGSEFTLFVGDLAPNVTEAQLFELFISRY 174
A A+ +GLR+ + +K+++A ++ + L++ L +T+ + ++F SR+
Sbjct: 74 AERAINTLNGLRL---QSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMF-SRF 129
Query: 175 SSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQG 214
+N++++ DQ TG+S+G F++F E + A+ G
Sbjct: 130 GRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
>Hs8922328 [R] KOG0153 Predicted RNA-binding protein (RRM superfamily)
Length = 420
Score = 59.7 bits (143), Expect = 1e-08
Identities = 30/85 (35%), Positives = 46/85 (53%), Gaps = 1/85 (1%)
Query: 305 PSLSQFTDPNNTTVFIGGLSTLITEDELRSYFQPFGQIVYVKIPVGKGCGFVQYVDRISA 364
P L D TT+++GGL ITE +LR++F FG+I + + + C F+Q+ R +A
Sbjct: 221 PRLDPPEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAA 280
Query: 365 ETAISK-MQGFPIGNSRIRLSWGRS 388
E A K + R+ + WGRS
Sbjct: 281 EVAAEKSFNKLIVNGRRLNVKWGRS 305
>At4g34110 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 629
Score = 59.7 bits (143), Expect = 1e-08
Identities = 42/171 (24%), Positives = 82/171 (47%), Gaps = 8/171 (4%)
Query: 55 STQLYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPNQM 114
+T LY+GDL+ + T++ + + +G V V++ + +S GY +V F N
Sbjct: 35 NTSLYVGDLDFNVTDSQLFDAFGQMGTV-VTVRVCRDLVTRRS-----LGYGYVNFTNPQ 88
Query: 115 AASNALMKSGLRVPMDSNYALKLNWASFATAPGSEFTLFVGDLAPNVTEAQLFELFISRY 174
A+ A+ + + + + +F+ +L ++ L + F S +
Sbjct: 89 DAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTF-SSF 147
Query: 175 SSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNGRAIRVG 225
+ ++ K+ D +G SKGYGFV++ NE Q+A+ ++ G LN + + VG
Sbjct: 148 GNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVG 197
>Hs22058480 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 360
Score = 59.3 bits (142), Expect = 2e-08
Identities = 47/176 (26%), Positives = 82/176 (45%), Gaps = 13/176 (7%)
Query: 58 LYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPNQMAAS 117
LY+GDL+P+ TE + +S G P + +++ + +S GY +V + + A
Sbjct: 164 LYVGDLHPEVTEAMLYEKFSPAG-PILSIRICRDKITRRS-----LGYAYVNYQQPVDAK 217
Query: 118 NALMKSGLRVPMDSNYALKLNWASF--ATAPGSEFTLFVGDLAPNVTEAQLFELFISRYS 175
AL L + +++ W+ + +F+ +L + L+ +F S +
Sbjct: 218 RAL--ETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIF-SAFG 274
Query: 176 STLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNGRAIRVGTTSKNK 231
+ L+ K+ D+ KGYGFV F + +RA+ M G FLN R I VG +K
Sbjct: 275 NILSCKVACDEKG--PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHK 328
Score = 51.2 bits (121), Expect = 4e-06
Identities = 28/74 (37%), Positives = 43/74 (57%), Gaps = 1/74 (1%)
Query: 151 TLFVGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALV 210
+L+VGDL P VTEA L+E F S L+ +I D+ T S GY +V + ++ +RAL
Sbjct: 163 SLYVGDLHPEVTEAMLYEKF-SPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 221
Query: 211 EMQGTFLNGRAIRV 224
+ + GR +R+
Sbjct: 222 TLNFDVIKGRPVRI 235
>HsM13236563 [R] KOG0226 RNA-binding proteins
Length = 451
Score = 58.9 bits (141), Expect = 2e-08
Identities = 31/76 (40%), Positives = 46/76 (59%), Gaps = 1/76 (1%)
Query: 149 EFTLFVGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRA 208
+F +F GDL V + L F SR+ S L AK++ D+ TG +KGYGFV F + + RA
Sbjct: 351 DFRIFCGDLGNEVNDDILARAF-SRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 409
Query: 209 LVEMQGTFLNGRAIRV 224
+ EM G ++ R I++
Sbjct: 410 MREMNGKYVGSRPIKL 425
>Hs21359951 [R] KOG0226 RNA-binding proteins
Length = 480
Score = 58.9 bits (141), Expect = 2e-08
Identities = 31/76 (40%), Positives = 46/76 (59%), Gaps = 1/76 (1%)
Query: 149 EFTLFVGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRA 208
+F +F GDL V + L F SR+ S L AK++ D+ TG +KGYGFV F + + RA
Sbjct: 380 DFRIFCGDLGNEVNDDILARAF-SRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 438
Query: 209 LVEMQGTFLNGRAIRV 224
+ EM G ++ R I++
Sbjct: 439 MREMNGKYVGSRPIKL 454
>YER165w [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 577
Score = 58.5 bits (140), Expect = 3e-08
Identities = 46/173 (26%), Positives = 82/173 (46%), Gaps = 12/173 (6%)
Query: 54 NSTQLYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPNQ 113
+S LY+GDL P +E + I+S +G + +++ + + S GY +V F +
Sbjct: 36 SSASLYVGDLEPSVSEAHLYDIFSPIGSVS-SIRVCRDAITKTS-----LGYAYVNFNDH 89
Query: 114 MAASNALMKSGLRVPMDSNYALKLNWASF--ATAPGSEFTLFVGDLAPNVTEAQLFELFI 171
A A+ + L ++ W+ + +F+ +L P++ L++ F
Sbjct: 90 EAGRKAIEQ--LNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTF- 146
Query: 172 SRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNGRAIRV 224
S + L++KI D+ G SKG+GFV F E + A+ + G LNG+ I V
Sbjct: 147 SVFGDILSSKIATDE-NGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYV 198
>CE03230 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 566
Score = 58.5 bits (140), Expect = 3e-08
Identities = 45/168 (26%), Positives = 76/168 (44%), Gaps = 8/168 (4%)
Query: 58 LYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPNQMAAS 117
LY+GDL+PD +E + +SM G P + +++ + + S GY +V F A
Sbjct: 59 LYIGDLHPDVSEAMLFEKFSMAG-PVLSIRVCRDNTSRLS-----LGYAYVNFQQPADAE 112
Query: 118 NALMKSGLRVPMDSNYALKLNWASFATAPGSEFTLFVGDLAPNVTEAQLFELFISRYSST 177
AL V + + A +F+ +L + +++ F S + +
Sbjct: 113 RALDTMNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSVYDTF-SLFGNI 171
Query: 178 LNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNGRAIRVG 225
L+ K+ D G SKGYGFV F E Q A+ ++ G L+ + + VG
Sbjct: 172 LSCKVATDD-EGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVG 218
Score = 58.2 bits (139), Expect = 4e-08
Identities = 59/261 (22%), Positives = 98/261 (36%), Gaps = 22/261 (8%)
Query: 151 TLFVGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALV 210
+L++GDL P+V+EA LFE F S L+ ++ D + +S GY +V F + +RAL
Sbjct: 58 SLYIGDLHPDVSEAMLFEKF-SMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALD 116
Query: 211 EMQGTFLNGRAIRVGTTSK--------NKXXXXXXXXXXXXXXXXXXXRFXXXXXXXXXX 262
M ++GR +R+ + + N
Sbjct: 117 TMNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKV 176
Query: 263 XXXXXXXXXXXXXXHISTPTSQAT---PANSGMLQSKFSYPVLQQPSLSQFTDPNN---- 315
H T S T N +L K Y QP + +
Sbjct: 177 ATDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMKELGESGLK 236
Query: 316 -TTVFIGGLSTLITEDELRSYFQPFGQIVYVKIPVG-----KGCGFVQYVDRISAETAIS 369
T VF+ + +++L + F FG+I + KG GFV + D+ +A A+
Sbjct: 237 YTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVE 296
Query: 370 KMQGFPIGNSRIRLSWGRSAK 390
K+ + + +LS R+ K
Sbjct: 297 KLNDSILEGTDCKLSVCRAQK 317
>CE02193 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 692
Score = 58.5 bits (140), Expect = 3e-08
Identities = 45/168 (26%), Positives = 76/168 (44%), Gaps = 8/168 (4%)
Query: 58 LYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPNQMAAS 117
LY+GDL+PD +E + +SM G P + +++ + + S GY +V F A
Sbjct: 59 LYIGDLHPDVSEAMLFEKFSMAG-PVLSIRVCRDNTSRLS-----LGYAYVNFQQPADAE 112
Query: 118 NALMKSGLRVPMDSNYALKLNWASFATAPGSEFTLFVGDLAPNVTEAQLFELFISRYSST 177
AL V + + A +F+ +L + +++ F S + +
Sbjct: 113 RALDTMNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSVYDTF-SLFGNI 171
Query: 178 LNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNGRAIRVG 225
L+ K+ D G SKGYGFV F E Q A+ ++ G L+ + + VG
Sbjct: 172 LSCKVATDD-EGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVG 218
Score = 58.2 bits (139), Expect = 4e-08
Identities = 59/261 (22%), Positives = 98/261 (36%), Gaps = 22/261 (8%)
Query: 151 TLFVGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALV 210
+L++GDL P+V+EA LFE F S L+ ++ D + +S GY +V F + +RAL
Sbjct: 58 SLYIGDLHPDVSEAMLFEKF-SMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALD 116
Query: 211 EMQGTFLNGRAIRVGTTSK--------NKXXXXXXXXXXXXXXXXXXXRFXXXXXXXXXX 262
M ++GR +R+ + + N
Sbjct: 117 TMNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKV 176
Query: 263 XXXXXXXXXXXXXXHISTPTSQAT---PANSGMLQSKFSYPVLQQPSLSQFTDPNN---- 315
H T S T N +L K Y QP + +
Sbjct: 177 ATDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMKELGESGLK 236
Query: 316 -TTVFIGGLSTLITEDELRSYFQPFGQIVYVKIPVG-----KGCGFVQYVDRISAETAIS 369
T VF+ + +++L + F FG+I + KG GFV + D+ +A A+
Sbjct: 237 YTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVE 296
Query: 370 KMQGFPIGNSRIRLSWGRSAK 390
K+ + + +LS R+ K
Sbjct: 297 KLNDSILEGTDCKLSVCRAQK 317
>At3g04500 [R] KOG0226 RNA-binding proteins
Length = 245
Score = 58.5 bits (140), Expect = 3e-08
Identities = 31/83 (37%), Positives = 50/83 (59%), Gaps = 1/83 (1%)
Query: 146 PGSEFTLFVGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQ 205
P +++ LF GDL V + L + F +R+ + AK++ D+ TG +KGYGFV F+N +
Sbjct: 133 PENDYRLFCGDLGNEVNDDVLSKAF-ARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADL 191
Query: 206 QRALVEMQGTFLNGRAIRVGTTS 228
AL EM G ++ R I++ +S
Sbjct: 192 AAALKEMNGKYVGNRPIKLRKSS 214
>CE27709 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 376
Score = 58.2 bits (139), Expect = 4e-08
Identities = 36/104 (34%), Positives = 53/104 (50%), Gaps = 13/104 (12%)
Query: 135 LKLNWASFATAPGSE---------FTLFVGDLAPNVTEAQLFELFISRYSSTLNAKIVFD 185
+K+NWA PG + F +FVGDL+ V +L E F + +AK++ D
Sbjct: 82 MKVNWA---VEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAF-QPFGDVSDAKVIRD 137
Query: 186 QFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNGRAIRVGTTSK 229
T SKGYGFV + E +RA+ +M G +L R IR ++
Sbjct: 138 TNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATR 181
Score = 57.8 bits (138), Expect = 5e-08
Identities = 29/78 (37%), Positives = 50/78 (63%), Gaps = 1/78 (1%)
Query: 311 TDPNNTTVFIGGLSTLITEDELRSYFQPFGQIVYVKIPVGKGCGFVQYVDRISAETAISK 370
T +NT+V++G +++L TEDE+R F FG+I V+I +G FV++ ++ +A AI +
Sbjct: 204 TSGDNTSVYVGNIASL-TEDEIRQGFASFGRITEVRIFKMQGYAFVKFDNKDAAAKAIVQ 262
Query: 371 MQGFPIGNSRIRLSWGRS 388
M +G +R SWG++
Sbjct: 263 MNNQDVGGQLVRCSWGKT 280
Score = 54.3 bits (129), Expect = 5e-07
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Query: 294 QSKFSYPVLQQPSLSQFTDPNNTTVFIGGLSTLITEDELRSYFQPFGQIVYVKI------ 347
+ K ++ V S+ + VF+G LS+ + +LR FQPFG + K+
Sbjct: 81 EMKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNT 140
Query: 348 PVGKGCGFVQYVDRISAETAISKMQGFPIGNSRIRLSW 385
KG GFV Y R AE AI +M G +G IR +W
Sbjct: 141 TKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNW 178
>CE20412 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 646
Score = 58.2 bits (139), Expect = 4e-08
Identities = 47/182 (25%), Positives = 79/182 (42%), Gaps = 15/182 (8%)
Query: 51 PIQNST-------QLYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNS 103
P QN T LY+GDL+PD E+ + +S G P + +++ + + S
Sbjct: 20 PGQNQTGSSYTMASLYVGDLHPDVNESILFEKFSAAG-PVLSIRVCRDNATRLS-----L 73
Query: 104 GYCFVEFPNQMAASNALMKSGLRVPMDSNYALKLNWASFATAPGSEFTLFVGDLAPNVTE 163
GY +V F A A+ + + A +F+ +L +
Sbjct: 74 GYAYVNFQQPADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDN 133
Query: 164 AQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNGRAIR 223
+++ F S + + L+ K+ D+ G SKGYGFV F E Q A+ ++ G L G+ +
Sbjct: 134 KSIYDTF-SLFGNILSCKVAIDE-DGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVF 191
Query: 224 VG 225
VG
Sbjct: 192 VG 193
>7291222 [R] KOG0151 Predicted splicing regulator contains RRM SWAP and RPR
domains
Length = 957
Score = 58.2 bits (139), Expect = 4e-08
Identities = 36/118 (30%), Positives = 56/118 (46%), Gaps = 10/118 (8%)
Query: 281 PTSQATPANSGMLQSKFSYPVLQQPSLSQFT-DPNNTTVFIGGLSTLITEDELRSYFQPF 339
P + A P S + + + S S T DPN T +++G L+ I+E +L F +
Sbjct: 179 PAASAAPVPSSSVSTTSQNSSSSKESGSFDTGDPNTTNLYLGNLNPKISEQQLMEIFGRY 238
Query: 340 GQIVYVKI---------PVGKGCGFVQYVDRISAETAISKMQGFPIGNSRIRLSWGRS 388
G + +KI G+ CGFV Y+ R AE A+ + G I +RL WG++
Sbjct: 239 GPLASIKIMWPRSEEEKQRGRNCGFVAYMSRKDAERALKTLNGRYIMGYEMRLGWGKT 296
>HsM8922450 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 406
Score = 57.8 bits (138), Expect = 5e-08
Identities = 44/159 (27%), Positives = 74/159 (45%), Gaps = 6/159 (3%)
Query: 71 DIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPNQMAASNALMKSGLRVPMD 130
D++ +S +G+ V++I N +S + +C ++ G+ + +
Sbjct: 147 DLEDFFSAVGKVR-DVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQ 205
Query: 131 SNYALKLNWASFAT----APGSEFTLFVGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQ 186
++ A K A+ A G L+VG L N+TE L +F + N ++ D
Sbjct: 206 ASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIF-EPFGKIDNIVLMKDS 264
Query: 187 FTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNGRAIRVG 225
TG SKGYGF+ F + +RAL ++ G L GR +RVG
Sbjct: 265 DTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVG 303
>Hs21361702 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 424
Score = 57.8 bits (138), Expect = 5e-08
Identities = 44/159 (27%), Positives = 74/159 (45%), Gaps = 6/159 (3%)
Query: 71 DIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPNQMAASNALMKSGLRVPMD 130
D++ +S +G+ V++I N +S + +C ++ G+ + +
Sbjct: 165 DLEDFFSAVGKVR-DVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQ 223
Query: 131 SNYALKLNWASFAT----APGSEFTLFVGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQ 186
++ A K A+ A G L+VG L N+TE L +F + N ++ D
Sbjct: 224 ASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIF-EPFGKIDNIVLMKDS 282
Query: 187 FTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNGRAIRVG 225
TG SKGYGF+ F + +RAL ++ G L GR +RVG
Sbjct: 283 DTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVG 321
>At1g49760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 704
Score = 57.8 bits (138), Expect = 5e-08
Identities = 33/85 (38%), Positives = 48/85 (55%), Gaps = 1/85 (1%)
Query: 140 ASFATAPGSEFTLFVGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKF 199
A+ A +L+VGDL VT++QLFE F ++ ++ ++ D T S GYG+V +
Sbjct: 35 AAAGAAQQGTTSLYVGDLDATVTDSQLFEAF-TQAGQVVSVRVCRDMTTRRSLGYGYVNY 93
Query: 200 VNEMEQQRALVEMQGTFLNGRAIRV 224
+ RAL E+ LNGRAIRV
Sbjct: 94 ATPQDASRALNELNFMALNGRAIRV 118
Score = 56.6 bits (135), Expect = 1e-07
Identities = 43/173 (24%), Positives = 79/173 (44%), Gaps = 8/173 (4%)
Query: 53 QNSTQLYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPN 112
Q +T LY+GDL+ T++ + ++ G+ V V++ + +S GY +V +
Sbjct: 42 QGTTSLYVGDLDATVTDSQLFEAFTQAGQV-VSVRVCRDMTTRRS-----LGYGYVNYAT 95
Query: 113 QMAASNALMKSGLRVPMDSNYALKLNWASFATAPGSEFTLFVGDLAPNVTEAQLFELFIS 172
AS AL + + + + +F+ +L ++ L E F S
Sbjct: 96 PQDASRALNELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETF-S 154
Query: 173 RYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNGRAIRVG 225
+ L+ K+ D +G SKGYGFV++ + Q A+ ++ G LN + + VG
Sbjct: 155 AFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVG 206
>Hs4504715 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 644
Score = 57.4 bits (137), Expect = 6e-08
Identities = 41/134 (30%), Positives = 65/134 (47%), Gaps = 8/134 (5%)
Query: 102 NSGYCFVEFPNQMAASNALMKSGLRVPMD-----SNYALKLNWASFATAPGSEFT-LFVG 155
+ GY FV F Q AA A+ K + D + + + A EFT +++
Sbjct: 137 SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIK 196
Query: 156 DLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGT 215
+ V + L ELF S++ TL+ K++ D G SKG+GFV + + +A+ EM G
Sbjct: 197 NFGEEVDDESLKELF-SQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGK 254
Query: 216 FLNGRAIRVGTTSK 229
++G+ I VG K
Sbjct: 255 EISGKIIFVGRAQK 268
Score = 55.5 bits (132), Expect = 2e-07
Identities = 45/174 (25%), Positives = 76/174 (42%), Gaps = 9/174 (5%)
Query: 58 LYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPNQMAAS 117
LY+GDL+ D TE + +S G P + +++ + +S GY +V F A
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAG-PVLSIRVCRDMITRRS-----LGYAYVNFQQPADAE 66
Query: 118 NALMKSGLRVPMDSNYALKLNWASFATAPGSEFTLFVGDLAPNVTEAQLFELFISRYSST 177
AL V + + + +F+ +L ++ L++ F S + +
Sbjct: 67 RALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTF-SAFGNI 125
Query: 178 LNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNGRAIRVGTTSKNK 231
L+ K+V D+ SKGY FV F + +A+ +M G LN R + VG K
Sbjct: 126 LSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
>Hs20559158 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 330
Score = 57.4 bits (137), Expect = 6e-08
Identities = 46/172 (26%), Positives = 81/172 (46%), Gaps = 17/172 (9%)
Query: 58 LYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPNQMAAS 117
LY+GDL+PD TE + +S G P + +++ + +S GY ++ F A
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAG-PILSIRVCRDVATRRS-----LGYAYINFQQPADAE 66
Query: 118 NALMKSGLRVPMDSNYALKLNWASFATAPGSEFT----LFVGDLAPNVTEAQLFELFISR 173
AL + M +++ W+ PG + +F+ +L ++ L++ F S
Sbjct: 67 RAL--DTMNFEMLKGQPIRIMWSQ--RDPGLRKSGVGNIFIKNLEDSIDNKALYDTF-ST 121
Query: 174 YSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNGRAIRVG 225
+ + L+ K+ D+ S+G+GFV F Q+A+ M G LN R + VG
Sbjct: 122 FGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVG 171
Score = 50.4 bits (119), Expect = 7e-06
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 151 TLFVGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALV 210
+L+VGDL P+VTEA L+E F S L+ ++ D T S GY ++ F + +RAL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKF-SPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 211 EMQGTFLNGRAIRV 224
M L G+ IR+
Sbjct: 71 TMNFEMLKGQPIRI 84
>Hs14790190 [R] KOG0112 Large RNA-binding protein (RRM superfamily)
Length = 3664
Score = 57.0 bits (136), Expect = 8e-08
Identities = 33/85 (38%), Positives = 47/85 (54%), Gaps = 3/85 (3%)
Query: 307 LSQFTDPNNTTVFIGGLSTLITEDELRSYFQPFGQIVYVKIPVGKGC---GFVQYVDRIS 363
+ +F T+FIG L T +LR+ FQ FG+IV + I G F+QY D S
Sbjct: 429 IDEFHPKATRTLFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKVNGVPQYAFLQYCDIAS 488
Query: 364 AETAISKMQGFPIGNSRIRLSWGRS 388
AI KM G +GN+R++L +G+S
Sbjct: 489 VCKAIKKMDGEYLGNNRLKLGFGKS 513
>CE24791 [A] KOG0131 Splicing factor 3b subunit 4
Length = 389
Score = 57.0 bits (136), Expect = 8e-08
Identities = 61/187 (32%), Positives = 85/187 (44%), Gaps = 18/187 (9%)
Query: 50 GPIQNSTQ---LYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSN-PNKSHAVNNSGY 105
GPI Q +Y+G L+ +E S+L E VQ + S N P N+ G+
Sbjct: 14 GPIVERNQDATIYVGGLDEKVSE-------SILWELMVQAGPVVSVNMPKDRVTANHQGF 66
Query: 106 CFVEFPNQMAASNALMKSGLRVPMDSNYALKLNWASFATAPGSEF--TLFVGDLAPNVTE 163
FVEF + A A+ L + +K+N AS A + +FVG+L P V E
Sbjct: 67 GFVEFMGEEDADYAIKI--LNMIKLYGKPIKVNKAS-AHEKNMDVGANIFVGNLDPEVDE 123
Query: 164 AQLFELFISRYSSTLNA-KIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNGRAI 222
L++ F S + L KI+ D +G SKG+ F+ F + AL M G FL RAI
Sbjct: 124 KLLYDTF-SAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAI 182
Query: 223 RVGTTSK 229
V K
Sbjct: 183 TVSYAFK 189
>At2g23350 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 662
Score = 57.0 bits (136), Expect = 8e-08
Identities = 27/84 (32%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 147 GSEFTLFVGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQ 206
G+ +L+VGDL NVT++QL++ F + ++ ++ D T S GYG+V + N + +
Sbjct: 43 GALCSLYVGDLDFNVTDSQLYDYF-TEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAE 101
Query: 207 RALVEMQGTFLNGRAIRVGTTSKN 230
+A+ ++ ++LNG+ IR+ +S++
Sbjct: 102 KAMQKLNYSYLNGKMIRITYSSRD 125
Score = 50.8 bits (120), Expect = 6e-06
Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 8/168 (4%)
Query: 58 LYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPNQMAAS 117
LY+GDL+ + T++ + ++ + + V V++ + + N S GY +V + N A
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQV-VSVRVCRDAATNTS-----LGYGYVNYSNTDDAE 101
Query: 118 NALMKSGLRVPMDSNYALKLNWASFATAPGSEFTLFVGDLAPNVTEAQLFELFISRYSST 177
A+ K + + + LFV +L +V L E F S +
Sbjct: 102 KAMQKLNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAF-SGCGTI 160
Query: 178 LNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNGRAIRVG 225
++ K+ D G S+GYGFV+F E + A+ ++ G LN + I VG
Sbjct: 161 VSCKVATDHM-GQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVG 207
>SPAC57A7.04c [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 653
Score = 56.6 bits (135), Expect = 1e-07
Identities = 45/178 (25%), Positives = 81/178 (45%), Gaps = 12/178 (6%)
Query: 50 GPIQNSTQLYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVE 109
G S LY+G+L+P TE + +++ +G P +++ + + +S GY +V
Sbjct: 74 GTAPTSASLYVGELDPSVTEAMLFELFNSIG-PVASIRVCRDAVTRRS-----LGYAYVN 127
Query: 110 FPNQMAASNALMKSGLRVPMDSNYALKLNWASFATAPGSEFT--LFVGDLAPNVTEAQLF 167
F N AL + L + ++ W+ + T +F+ +L P + L
Sbjct: 128 FHNMEDGEKALDE--LNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALH 185
Query: 168 ELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNGRAIRVG 225
+ F S + L+ K+ D+ G +KGYGFV F + A+ + G LN + + VG
Sbjct: 186 DTF-SAFGKILSCKVAVDEL-GNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVG 241
Score = 56.2 bits (134), Expect = 1e-07
Identities = 36/90 (40%), Positives = 51/90 (56%), Gaps = 4/90 (4%)
Query: 138 NWASFATAPGSEFT---LFVGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGY 194
N +S AT G+ T L+VG+L P+VTEA LFELF S + ++ D T S GY
Sbjct: 65 NASSVATPSGTAPTSASLYVGELDPSVTEAMLFELFNS-IGPVASIRVCRDAVTRRSLGY 123
Query: 195 GFVKFVNEMEQQRALVEMQGTFLNGRAIRV 224
+V F N + ++AL E+ T + GR R+
Sbjct: 124 AYVNFHNMEDGEKALDELNYTLIKGRPCRI 153
>At5g06210 [R] KOG0118 FOG: RRM domain
Length = 146
Score = 56.6 bits (135), Expect = 1e-07
Identities = 35/83 (42%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 142 FATAPGSEFTLFVGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVN 201
F G LF+G L+ TE L E F S+ + A+IV D+ + SKG+GFV F +
Sbjct: 26 FTQRRGVASKLFIGGLSFCTTEQGLSEAF-SKCGQVVEAQIVMDRVSDRSKGFGFVTFAS 84
Query: 202 EMEQQRALVEMQGTFLNGRAIRV 224
E Q+AL+E G LNGR I V
Sbjct: 85 ADEAQKALMEFNGQQLNGRTIFV 107
>7296727 [R] KOG0226 RNA-binding proteins
Length = 302
Score = 56.6 bits (135), Expect = 1e-07
Identities = 31/84 (36%), Positives = 48/84 (56%), Gaps = 1/84 (1%)
Query: 141 SFATAPGSEFTLFVGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFV 200
S A P +F +F GDL +V + L F +++ S A++V D+ TG SKG+GFV F
Sbjct: 189 SLADWPDDDFRIFCGDLGNDVNDEVLTRTF-NKFPSFQRARVVRDKRTGKSKGFGFVSFR 247
Query: 201 NEMEQQRALVEMQGTFLNGRAIRV 224
+ RA+ EM G ++ R I++
Sbjct: 248 EPADFIRAMKEMDGRYVGSRPIKL 271
>Hs18201888 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 382
Score = 56.2 bits (134), Expect = 1e-07
Identities = 38/135 (28%), Positives = 72/135 (53%), Gaps = 9/135 (6%)
Query: 102 NSGYCFVEFPNQMAASNALMK-SGLRVPMDSNYALKLNW-----ASFATAPGSEFT-LFV 154
+ GY +V F + AA+ A+ +G+R+ Y + + A T + FT +FV
Sbjct: 144 SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFV 203
Query: 155 GDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQG 214
++ ++ + +L ELF Y T + K++ D +G SKG+GFV++ Q+A++++ G
Sbjct: 204 KNIGDDIDDEKLKELFCE-YGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHG 261
Query: 215 TFLNGRAIRVGTTSK 229
++G+ + VG K
Sbjct: 262 KSIDGKVLYVGRAQK 276
>At1g07360 [R] KOG0153 Predicted RNA-binding protein (RRM superfamily)
Length = 481
Score = 56.2 bits (134), Expect = 1e-07
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 312 DPNNTTVFIGGLSTLITEDELRSYFQPFGQIVYVKIPVGKGCGFVQYVDRISAETAISKM 371
D + T+++GGL++ I E ++R F G+I ++I K C FV Y R AE A ++
Sbjct: 224 DESIKTLYVGGLNSRILEQDIRDQFYAHGEIESIRILADKACAFVTYTSREGAEKAAQEL 283
Query: 372 QG-FPIGNSRIRLSWGR 387
I R++L+WGR
Sbjct: 284 SNRLVINGQRLKLTWGR 300
>YFR023w [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 611
Score = 55.8 bits (133), Expect = 2e-07
Identities = 29/79 (36%), Positives = 49/79 (61%), Gaps = 1/79 (1%)
Query: 152 LFVGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVE 211
LF+GDL VTE L +F +Y S ++AK+ D T S G+G++ F ++ E ++A+ E
Sbjct: 93 LFIGDLHETVTEETLKGIF-KKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEE 151
Query: 212 MQGTFLNGRAIRVGTTSKN 230
+ T +NG+ IR+ + +N
Sbjct: 152 LNYTKVNGKEIRIMPSLRN 170
>At5g50250 [R] KOG0118 FOG: RRM domain
Length = 289
Score = 55.8 bits (133), Expect = 2e-07
Identities = 30/80 (37%), Positives = 48/80 (59%), Gaps = 1/80 (1%)
Query: 150 FTLFVGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRAL 209
F ++VG+L +V +L LF S + ++A++V D+ TG S+G+GFV+ NE E A+
Sbjct: 207 FRIYVGNLPWDVDSGRLERLF-SEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAI 265
Query: 210 VEMQGTFLNGRAIRVGTTSK 229
+ G L GRAI+V +
Sbjct: 266 AALDGQNLEGRAIKVNVAEE 285
>At4g13850 [R] KOG0118 FOG: RRM domain
Length = 158
Score = 55.8 bits (133), Expect = 2e-07
Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 152 LFVGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVE 211
LF+G L+ +A L + F + + ++AK++ D+ TG S+G+GFV F +E A+ E
Sbjct: 37 LFIGGLSWGTDDASLRDAF-AHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 212 MQGTFLNGRAIRV 224
M G LNGR IRV
Sbjct: 96 MDGKELNGRHIRV 108
>At4g00830 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (RRM
superfamily)
Length = 521
Score = 54.7 bits (130), Expect = 4e-07
Identities = 44/183 (24%), Positives = 84/183 (45%), Gaps = 23/183 (12%)
Query: 53 QNSTQLYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPN 112
+ +L++G++ +WTE++ + + +G ++LIK + ++ N G+ FV + N
Sbjct: 219 ETKNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIK----DPTNTTRNRGFAFVLYYN 274
Query: 113 QMAASNALMKSGLRVPMDSNYALKLN-----WASFATAP------GSEFTLFVGDLAPNV 161
A + K +DSN+ L+ N WA ++P L+V ++ N
Sbjct: 275 NACADYSRQKM-----IDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENT 329
Query: 162 TEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNGRA 221
+ QL ELF R+ KIV G + +GFV + +A+ + + +NG+
Sbjct: 330 STEQLKELF-QRHGEV--TKIVTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNGQP 386
Query: 222 IRV 224
+ V
Sbjct: 387 LEV 389
>At2g29580 [R] KOG0153 Predicted RNA-binding protein (RRM superfamily)
Length = 483
Score = 54.7 bits (130), Expect = 4e-07
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 312 DPNNTTVFIGGLSTLITEDELRSYFQPFGQIVYVKIPVGKGCGFVQYVDRISAETAISKM 371
D + T+++GGL++ + E ++R F G+I ++I K C FV Y R AE A ++
Sbjct: 224 DQSIRTLYVGGLNSRVLEQDIRDQFYAHGEIESIRILAEKACAFVTYTTREGAEKAAEEL 283
Query: 372 QG-FPIGNSRIRLSWGR 387
+ R++L+WGR
Sbjct: 284 SNRLVVNGQRLKLTWGR 300
>7296892 [R] KOG0153 Predicted RNA-binding protein (RRM superfamily)
Length = 416
Score = 54.7 bits (130), Expect = 4e-07
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 287 PANSGMLQSKFSYPVLQQPSLSQFTDPNNTTVFIGGLSTLITEDELRSYFQPFGQIVYVK 346
P +++ S P L+ P D N TT+++G L ITE ELR F FG+I +
Sbjct: 206 PVAEKIMKRAASLPTLEPPE-----DRNITTLYVGNLPEEITEPELRDQFYQFGEIRSIA 260
Query: 347 IPVGKGCGFVQYVDRISAETAISK-MQGFPIGNSRIRLSWGRS 388
+ + C FVQY R +AE A + I ++ + W S
Sbjct: 261 LVPRQQCAFVQYTKRNAAELAAERTFNKLVIQGRKVSIKWAHS 303
>7290796 [R] KOG0118 FOG: RRM domain
Length = 334
Score = 54.7 bits (130), Expect = 4e-07
Identities = 42/170 (24%), Positives = 82/170 (47%), Gaps = 11/170 (6%)
Query: 51 PIQNSTQLYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEF 110
P ++T L + L D T+ ++ +++ +G N ++++ S GY FV+F
Sbjct: 80 PRASNTNLIVNYLPQDMTDRELYALFRAIGPINT-CRIMRDYKTGYSF-----GYAFVDF 133
Query: 111 PNQMAASNAL-MKSGLRVPMDSNYALKLNWASFATAPGSEFTLFVGDLAPNVTEAQLFEL 169
++M + A+ + +G+ V N LK+++A + L+V +L +T+ QL +
Sbjct: 134 TSEMDSQRAIKVLNGITV---RNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTI 190
Query: 170 FISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNG 219
F +Y S + I+ D+ TG +G FV++ E Q A+ + G
Sbjct: 191 F-GKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEG 239
>7290050 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 479
Score = 54.7 bits (130), Expect = 4e-07
Identities = 32/92 (34%), Positives = 49/92 (52%), Gaps = 2/92 (2%)
Query: 141 SFATAPGSEFTLFVGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFV 200
+ A+ PG + +F+ +LAP EA L++LF + + + KIV D T KGYGFV
Sbjct: 389 TLASGPGGAYPIFIYNLAPETEEAALWQLF-GPFGAVQSVKIVKDPTTNQCKGYGFVSMT 447
Query: 201 NEMEQQRALVEMQGTFLNGRAIRVG-TTSKNK 231
N E A+ + G + R ++V T+K K
Sbjct: 448 NYDEAAMAIRALNGYTMGNRVLQVSFKTNKAK 479
Score = 54.7 bits (130), Expect = 4e-07
Identities = 46/176 (26%), Positives = 86/176 (48%), Gaps = 15/176 (8%)
Query: 50 GPIQNSTQLYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSS--------NPNKSHAVN 101
G + T L + L TE++I+S++S +GE VKLI+ NP
Sbjct: 139 GSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIE-SVKLIRDKSQVYIDPLNPQAPSKGQ 197
Query: 102 NSGYCFVEFPNQMAASNAL-MKSGLRVPMDSNYALKLNWASFATAPGSEFTLFVGDLAPN 160
+ GY FV + A A+ + +GLR+ N +K+++A ++ L+V L
Sbjct: 198 SLGYGFVNYVRPQDAEQAVNVLNGLRL---QNKTIKVSFARPSSDAIKGANLYVSGLPKT 254
Query: 161 VTEAQLFELFISRYSSTLNAKIVFDQFTGV-SKGYGFVKFVNEMEQQRALVEMQGT 215
+T+ +L +F + + + + ++I+ + +KG GF++F E RA++ + GT
Sbjct: 255 MTQQELEAIF-APFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNGT 309
>Hs4757926 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 524
Score = 54.3 bits (129), Expect = 5e-07
Identities = 46/164 (28%), Positives = 79/164 (48%), Gaps = 16/164 (9%)
Query: 71 DIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPNQMAASNALMKSGLRVP-- 128
D++ +S +G+ V++I N +S G +VEF + + A+ +G RV
Sbjct: 168 DLEEFFSTVGKVR-DVRMISDRNSRRS-----KGIAYVEFVDVSSVPLAIGLTGQRVLGV 221
Query: 129 ---MDSNYALKLNWASFAT----APGSEFTLFVGDLAPNVTEAQLFELFISRYSSTLNAK 181
+ ++ A K A+ A L+VG L N+TE L +F + + +
Sbjct: 222 PIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIF-EPFGRIESIQ 280
Query: 182 IVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNGRAIRVG 225
++ D TG SKGYGF+ F + ++AL ++ G L GR ++VG
Sbjct: 281 LMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 324
>7302665 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 634
Score = 54.3 bits (129), Expect = 5e-07
Identities = 43/170 (25%), Positives = 79/170 (46%), Gaps = 12/170 (7%)
Query: 58 LYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPNQMAAS 117
LY+GDL D E+ + +S G P + +++ + +S GY +V F A
Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAG-PVLSIRVCRDVITRRS-----LGYAYVNFQQPADAE 57
Query: 118 NALMKSGLRVPMDSNYALKLNWASF--ATAPGSEFTLFVGDLAPNVTEAQLFELFISRYS 175
AL + + N +++ W+ + +F+ +L + +++ F S +
Sbjct: 58 RAL--DTMNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTF-SAFG 114
Query: 176 STLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNGRAIRVG 225
+ L+ K+ D+ G SKGYGFV F E ++ ++ G LNG+ + VG
Sbjct: 115 NILSCKVATDE-KGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVG 163
>7297213 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 594
Score = 54.3 bits (129), Expect = 5e-07
Identities = 48/169 (28%), Positives = 83/169 (48%), Gaps = 17/169 (10%)
Query: 71 DIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPNQMAASNALMKSGLR---V 127
D++ +S +G+ V+LI + + G ++EF + + + AL SG R V
Sbjct: 252 DLEEFFSSVGKVR-DVRLITCNKTKRF-----KGIAYIEFDDPESVALALGLSGQRLLGV 305
Query: 128 PMDSNYAL----KLNWASFATAPGSE---FTLFVGDLAPNVTEAQLFELFISRYSSTLNA 180
P+ + +L A+ A P S L+VG L N+TE L +F +
Sbjct: 306 PIMVQHTQAEKNRLQNAAPAFQPKSHTGPMRLYVGSLHFNITEDMLRGIF-EPFGKIDAI 364
Query: 181 KIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNGRAIRVGTTSK 229
+++ D TG SKGYGF+ + N + ++AL ++ G L GR ++VG ++
Sbjct: 365 QLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFELAGRLMKVGNVTE 413
>CE24459 [R] KOG0226 RNA-binding proteins
Length = 302
Score = 53.9 bits (128), Expect = 7e-07
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 141 SFATAPGSEFTLFVGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFV 200
S A ++F +F GDL V++ L + F +Y S AK+V + T SKGYGFV F
Sbjct: 194 SLAEWDENDFRVFCGDLGNEVSDELLAKAF-RKYPSFQKAKVVRESRTNKSKGYGFVSFR 252
Query: 201 NEMEQQRALVEMQGTFLNGRAIRV 224
+ + RA+ EM G ++ R I++
Sbjct: 253 DSEDYVRAMREMDGKYVGNRPIKL 276
>CE16307 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 83
Score = 53.9 bits (128), Expect = 7e-07
Identities = 29/80 (36%), Positives = 44/80 (54%), Gaps = 1/80 (1%)
Query: 150 FTLFVGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRAL 209
F+++VG+ TE +L F S N +IV D+ TG +G+ F++F E QRA+
Sbjct: 5 FSVYVGNAPFQTTEEELGNFF-SSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAV 63
Query: 210 VEMQGTFLNGRAIRVGTTSK 229
+M G NGR +RV +K
Sbjct: 64 EQMNGAEFNGRPLRVNLANK 83
>CE00983 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 456
Score = 53.9 bits (128), Expect = 7e-07
Identities = 42/168 (25%), Positives = 84/168 (50%), Gaps = 11/168 (6%)
Query: 53 QNSTQLYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPN 112
++ T L + L T+ +++S+++ +GE KL++ +S GY FV +
Sbjct: 39 ESKTNLIINYLPQGMTQEEVRSLFTSIGEIE-SCKLVRDKVTGQS-----LGYGFVNYVR 92
Query: 113 QMAASNALMK-SGLRVPMDSNYALKLNWASFATAPGSEFTLFVGDLAPNVTEAQLFELFI 171
+ A A+ +GLR+ N +K+++A + L+V + ++T +L +F
Sbjct: 93 EEDALRAVSSFNGLRL---QNKTIKVSYARPSNDQIKGSNLYVSGIPKSMTLHELESIF- 148
Query: 172 SRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNG 219
+ + ++I+ D TG+SKG GFV+F + E A+ + G+ +G
Sbjct: 149 RPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTLNGSIPSG 196
>At2g37220 [R] KOG0118 FOG: RRM domain
Length = 289
Score = 53.9 bits (128), Expect = 7e-07
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 147 GSEFTLFVGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQ 206
GS ++VG+L+ V + L LF S + A++++D+ +G SKG+GFV + + E Q
Sbjct: 201 GSGNRVYVGNLSWGVDDMALESLF-SEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQ 259
Query: 207 RALVEMQGTFLNGRAIRV 224
A+ + G L+GR IRV
Sbjct: 260 NAIKSLDGADLDGRQIRV 277
Score = 52.4 bits (124), Expect = 2e-06
Identities = 29/77 (37%), Positives = 47/77 (60%), Gaps = 1/77 (1%)
Query: 148 SEFTLFVGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQR 207
++ LFVG+L NV AQL +LF S + + ++++D+ TG S+G+GFV + E +
Sbjct: 89 ADLKLFVGNLPFNVDSAQLAQLFESAGNVEM-VEVIYDKITGRSRGFGFVTMSSVSEVEA 147
Query: 208 ALVEMQGTFLNGRAIRV 224
A + G L+GR +RV
Sbjct: 148 AAQQFNGYELDGRPLRV 164
>At4g24770 [R] KOG0118 FOG: RRM domain
Length = 329
Score = 53.5 bits (127), Expect = 9e-07
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 150 FTLFVGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRAL 209
F ++VG+L +V +L +LF S + + A++V+D+ TG S+G+GFV + E A+
Sbjct: 244 FRVYVGNLPWDVDNGRLEQLF-SEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAI 302
Query: 210 VEMQGTFLNGRAIRVGTTSK 229
+ G L GRAIRV +
Sbjct: 303 SALDGQNLEGRAIRVNVAEE 322
>At3g53460 [R] KOG0118 FOG: RRM domain
Length = 342
Score = 53.5 bits (127), Expect = 9e-07
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 147 GSEFTLFVGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQ 206
GS L+VG+L+ V + L LF + + A++++D+ +G SKG+GFV + E Q
Sbjct: 254 GSGNRLYVGNLSWGVDDMALENLF-NEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQ 312
Query: 207 RALVEMQGTFLNGRAIRV 224
+A+ + G L+GR IRV
Sbjct: 313 KAINSLNGADLDGRQIRV 330
Score = 50.4 bits (119), Expect = 7e-06
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 149 EFTLFVGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRA 208
+ LFVG+L+ NV AQL +LF S + + ++++D+ TG S+G+GFV E + A
Sbjct: 98 DLKLFVGNLSFNVDSAQLAQLFESAGNVEM-VEVIYDKVTGRSRGFGFVTMSTAAEVEAA 156
Query: 209 LVEMQGTFLNGRAIRV 224
+ G GR +RV
Sbjct: 157 AQQFNGYEFEGRPLRV 172
>At3g26420 [R] KOG0118 FOG: RRM domain
Length = 245
Score = 53.5 bits (127), Expect = 9e-07
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 149 EFTLFVGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRA 208
E+ F+G LA ++ L + F +Y + AK+V D+F+G S+G+GF+ F + A
Sbjct: 6 EYRCFIGGLAWTTSDRGLRDAF-EKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEA 64
Query: 209 LVEMQGTFLNGRAIRV 224
+ M G L+GR I V
Sbjct: 65 IAAMNGMDLDGRTITV 80
>YGR159c [K] KOG4210 Nuclear localization sequence binding protein
Length = 414
Score = 53.1 bits (126), Expect = 1e-06
Identities = 43/181 (23%), Positives = 85/181 (46%), Gaps = 30/181 (16%)
Query: 63 LNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPNQMAASNALMK 122
++ +W + + + I ++G ++I ++S GY +V+F N+ A A+ +
Sbjct: 179 IDDEWLKKEFEHIGGVIG-----ARVIYERGTDRSR-----GYGYVDFENKSYAEKAIQE 228
Query: 123 -SGLRV-------------PMDSNYALKLNWASFATAPGSEF-TLFVGDLAPNVTEAQLF 167
G + P +N K F P TLF+G+L+ N +F
Sbjct: 229 MQGKEIDGRPINCDMSTSKPAGNNDRAK----KFGDTPSEPSDTLFLGNLSFNADRDAIF 284
Query: 168 ELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNGRAIRVGTT 227
ELF +++ ++ +I T KG+G+V+F N + ++AL +QG +++ R +R+ +
Sbjct: 285 ELF-AKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFS 343
Query: 228 S 228
S
Sbjct: 344 S 344
>Hs4503259 [R] KOG0118 FOG: RRM domain
Length = 295
Score = 53.1 bits (126), Expect = 1e-06
Identities = 31/75 (41%), Positives = 49/75 (65%), Gaps = 4/75 (5%)
Query: 151 TLFVGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALV 210
T+FVG + + E ++ F +RY S KI+ D+ TGVSKGYGFV F N+++ Q+ +V
Sbjct: 41 TVFVGGIDVRMDETEI-RSFFARYGSVKEVKIITDR-TGVSKGYGFVSFFNDVDVQK-IV 97
Query: 211 EMQGTFLNGRAIRVG 225
E Q F +G+ +++G
Sbjct: 98 ESQINF-HGKKLKLG 111
>Hs14731277 [R] KOG0118 FOG: RRM domain
Length = 295
Score = 53.1 bits (126), Expect = 1e-06
Identities = 31/75 (41%), Positives = 49/75 (65%), Gaps = 4/75 (5%)
Query: 151 TLFVGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALV 210
T+FVG + + E ++ F +RY S KI+ D+ TGVSKGYGFV F N+++ Q+ +V
Sbjct: 41 TVFVGGIDVRMDETEI-RSFFARYGSVKEVKIITDR-TGVSKGYGFVSFFNDVDVQK-IV 97
Query: 211 EMQGTFLNGRAIRVG 225
E Q F +G+ +++G
Sbjct: 98 ESQINF-HGKKLKLG 111
>Hs14149675 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 616
Score = 53.1 bits (126), Expect = 1e-06
Identities = 27/81 (33%), Positives = 48/81 (58%), Gaps = 1/81 (1%)
Query: 151 TLFVGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALV 210
++FVG++ TE QL ++F S S ++ ++V+D+ TG KGYGF ++ ++ A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIF-SEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 211 EMQGTFLNGRAIRVGTTSKNK 231
+ G +GRA+RV + K
Sbjct: 76 NLNGREFSGRALRVDNAASEK 96
>CE16308 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 85
Score = 53.1 bits (126), Expect = 1e-06
Identities = 30/77 (38%), Positives = 44/77 (56%), Gaps = 1/77 (1%)
Query: 148 SEFTLFVGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQR 207
S F+++VG+ TE L F S+ + N +IV D+ TG +G+ FV+F E QR
Sbjct: 2 SGFSVYVGNAPFQTTEDDLGNYF-SQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQR 60
Query: 208 ALVEMQGTFLNGRAIRV 224
A+ + G NGRA+RV
Sbjct: 61 AVDQFNGVDFNGRALRV 77
>At5g51300 [A] KOG0119 Splicing factor 1/branch point binding protein (RRM
superfamily)
Length = 804
Score = 53.1 bits (126), Expect = 1e-06
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 149 EFTLFVGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRA 208
E L++G L P + + L LF S + + AK++ D+ TG+SKGYGFVK+ + A
Sbjct: 479 ETNLYIGFLPPMLEDDGLINLF-SSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTA 537
Query: 209 LVEMQGTFLNGRAIRVGTTSKN 230
+ M G GR + V K+
Sbjct: 538 VQAMNGYRFEGRTLAVRIAGKS 559
>At4g09040 [R] KOG0118 FOG: RRM domain
Length = 225
Score = 53.1 bits (126), Expect = 1e-06
Identities = 39/136 (28%), Positives = 63/136 (45%), Gaps = 12/136 (8%)
Query: 104 GYCFVEFPNQMAASNALMK------SGLRVPMDSNYALKLNWASFAT----APGSEFTLF 153
G F+E + AS A + G R+ +D YA ++A +P F LF
Sbjct: 56 GLVFIEMASPEEASTAFISLESYEYEGRRLKVD--YAKTKKKKTYAPRETPSPVPTFNLF 113
Query: 154 VGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQ 213
V +LA L E F + + ++ +++F + S GYGFV F + + + AL+E Q
Sbjct: 114 VANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQ 173
Query: 214 GTFLNGRAIRVGTTSK 229
G GR IR+ + +
Sbjct: 174 GKDFLGRPIRLAKSKQ 189
>At5g09880 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 604
Score = 52.8 bits (125), Expect = 1e-06
Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 19/172 (11%)
Query: 68 TENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPNQMAASNALMKSG--- 124
TE D+ +S G+ V+LI N +S V ++EF + M+ A+ SG
Sbjct: 180 TERDVYEFFSKAGKVR-DVRLIMDRNSRRSKGVG-----YIEFYDVMSVPMAIALSGQLF 233
Query: 125 LRVPM-------DSNYALKLNWASFATAPGSEFTLFVGDLAPNVTEAQLFELFISRYSST 177
L P+ + N A + T P L+VG+L N++E QL ++F +
Sbjct: 234 LGQPVMVKPSEAEKNLAQSNSTTVGGTGPADR-KLYVGNLHFNMSELQLRQIF-EAFGPV 291
Query: 178 LNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTF-LNGRAIRVGTTS 228
++ D TG KG+GF++FV + A + + G + GR I+V + S
Sbjct: 292 ELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNGKLEIAGRTIKVSSVS 343
>At3g23830 [R] KOG0118 FOG: RRM domain
Length = 136
Score = 52.8 bits (125), Expect = 1e-06
Identities = 30/78 (38%), Positives = 43/78 (54%), Gaps = 1/78 (1%)
Query: 152 LFVGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVE 211
LFVG L+ ++ L + F S + A ++ D+ TG S+G+GFV F E A+ E
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTS-FGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 212 MQGTFLNGRAIRVGTTSK 229
M G LNGR IRV ++
Sbjct: 96 MDGKELNGRQIRVNLATE 113
>At3g07810 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 492
Score = 52.8 bits (125), Expect = 1e-06
Identities = 45/184 (24%), Positives = 89/184 (47%), Gaps = 26/184 (14%)
Query: 57 QLYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPNQMAA 116
+L++G ++ D E +K +S GE ++ ++K ++ G+ FV F + A
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEV-IEAVILKDRTTGRAR-----GFGFVVFADPAVA 60
Query: 117 S----------NALMKSGLRVPMDS-NYALKLNWASFATAPGSEFT---LFVGDLAPNVT 162
L+++ VP D N + N +S +PG +FVG L +VT
Sbjct: 61 EIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVT 120
Query: 163 EAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTF--LNGR 220
E+ F+ + ++ +T + +++D T +G+GF+ + +E ++ L++ TF LNG+
Sbjct: 121 ESD-FKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLK---TFHELNGK 176
Query: 221 AIRV 224
+ V
Sbjct: 177 MVEV 180
>7294989 [R] KOG0118 FOG: RRM domain
Length = 198
Score = 52.8 bits (125), Expect = 1e-06
Identities = 30/80 (37%), Positives = 44/80 (54%), Gaps = 2/80 (2%)
Query: 152 LFVGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVE 211
+FVG ++ + TEA L +F S Y + + KI+ D+ GVSKGYGFV F E E QR +
Sbjct: 35 IFVGGISGDTTEADLTRVF-SAYGTVKSTKIIVDR-AGVSKGYGFVTFETEQEAQRLQAD 92
Query: 212 MQGTFLNGRAIRVGTTSKNK 231
+ L R + + K +
Sbjct: 93 GECVVLRDRKLNIAPAIKKQ 112
>Hs5729816 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superfamily)
Length = 509
Score = 52.4 bits (124), Expect = 2e-06
Identities = 34/104 (32%), Positives = 50/104 (47%), Gaps = 8/104 (7%)
Query: 293 LQSKFSYPVLQQPSL--SQFTDPNNTTVFIGGLSTLITEDELRSYFQPFGQIVYVKIPVG 350
L + +S +LQQ S SQ P +FI L + + F PFG ++ K+ +
Sbjct: 399 LPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQHILQMFMPFGNVISAKVFID 458
Query: 351 KGC------GFVQYVDRISAETAISKMQGFPIGNSRIRLSWGRS 388
K GFV Y + +SA+ AI M GF IG R+++ RS
Sbjct: 459 KQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRS 502
>At2g21660 [R] KOG0118 FOG: RRM domain
Length = 176
Score = 52.4 bits (124), Expect = 2e-06
Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 149 EFTLFVGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRA 208
E+ FVG LA T+ + E ++Y +++KI+ D+ TG S+G+GFV F +E + A
Sbjct: 7 EYRCFVGGLAW-ATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDA 65
Query: 209 LVEMQGTFLNGRAIRV 224
+ M G L+GR+I V
Sbjct: 66 IEGMNGQDLDGRSITV 81
>At4g39260 [R] KOG0118 FOG: RRM domain
Length = 169
Score = 52.0 bits (123), Expect = 3e-06
Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 149 EFTLFVGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRA 208
E+ FVG LA + L F S++ +++KI+ D+ +G S+G+GFV F +E + A
Sbjct: 5 EYRCFVGGLAWATNDEDLQRTF-SQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDA 63
Query: 209 LVEMQGTFLNGRAIRV 224
+ EM G L+GR I V
Sbjct: 64 IEEMNGKELDGRVITV 79
>At2g43370 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM superfamily)
Length = 292
Score = 52.0 bits (123), Expect = 3e-06
Identities = 30/74 (40%), Positives = 44/74 (58%), Gaps = 1/74 (1%)
Query: 151 TLFVGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALV 210
TLFVG L+ + TE L E+ +S+Y N ++V TG S+GYGFV++ E E RA
Sbjct: 59 TLFVGRLSHHTTEDTLREV-MSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYE 117
Query: 211 EMQGTFLNGRAIRV 224
+ + ++GR I V
Sbjct: 118 DAHHSLIDGREIIV 131
>CE18119 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 84
Score = 51.6 bits (122), Expect = 3e-06
Identities = 27/80 (33%), Positives = 46/80 (56%), Gaps = 1/80 (1%)
Query: 150 FTLFVGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRAL 209
F+++VG++ TE ++ F + N +IV+D+ TG +G+ FV+F E QRA+
Sbjct: 6 FSVYVGNVPYQGTEEEIGNYFAA-VGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAV 64
Query: 210 VEMQGTFLNGRAIRVGTTSK 229
++ G NGR +RV +K
Sbjct: 65 EQLNGVAFNGRNLRVNYANK 84
>Hs5729794 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superfamily)
Length = 482
Score = 51.2 bits (121), Expect = 4e-06
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 293 LQSKFSYPVLQQPSL----SQFTDPNNTTVFIGGLSTLITEDELRSYFQPFGQIVYVKIP 348
L + ++ +L Q S+ SQ P +FI L + +L F PFG +V K+
Sbjct: 370 LPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVF 429
Query: 349 VGKGC------GFVQYVDRISAETAISKMQGFPIGNSRIRLSWGRS 388
+ K GFV Y + +SA+ AI M GF IG R+++ RS
Sbjct: 430 IDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRS 475
>Hs4557493 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 577
Score = 51.2 bits (121), Expect = 4e-06
Identities = 26/81 (32%), Positives = 47/81 (57%), Gaps = 1/81 (1%)
Query: 151 TLFVGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALV 210
++FVG++ TE QL ++F S ++ ++V+D+ TG KGYGF ++ ++ A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIF-SEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 211 EMQGTFLNGRAIRVGTTSKNK 231
+ G +GRA+RV + K
Sbjct: 76 NLNGREFSGRALRVDNAASEK 96
>CE16126 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 336
Score = 51.2 bits (121), Expect = 4e-06
Identities = 27/81 (33%), Positives = 52/81 (63%), Gaps = 1/81 (1%)
Query: 148 SEFTLFVGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQR 207
S+ ++FVG+++ +V+E + +F S+ + L+ K+V D+ TG KGYGF++F + +
Sbjct: 16 SQRSVFVGNISYDVSEDTIRSIF-SKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEV 74
Query: 208 ALVEMQGTFLNGRAIRVGTTS 228
A+ + G L+GR +RV + +
Sbjct: 75 AIRNLNGYELSGRILRVDSAA 95
>At5g61030 [R] KOG0118 FOG: RRM domain
Length = 309
Score = 51.2 bits (121), Expect = 4e-06
Identities = 25/77 (32%), Positives = 45/77 (57%), Gaps = 1/77 (1%)
Query: 148 SEFTLFVGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQR 207
S LF+G +A ++ E L E F ++Y ++ +++ D+ TG S+G+GFV F +
Sbjct: 38 SSSKLFIGGMAYSMDEDSLREAF-TKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASS 96
Query: 208 ALVEMQGTFLNGRAIRV 224
A+ + G L+GR ++V
Sbjct: 97 AIQALDGRDLHGRVVKV 113
>At5g47320 [J] KOG0899 Mitochondrial/chloroplast ribosomal protein S19
Length = 244
Score = 51.2 bits (121), Expect = 4e-06
Identities = 27/73 (36%), Positives = 42/73 (56%), Gaps = 1/73 (1%)
Query: 152 LFVGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVE 211
L++G L+P E L + F S ++ A+++ ++ TG S+GYGFV F++E A+
Sbjct: 65 LYIGGLSPGTDEHSLKDAF-SSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 123
Query: 212 MQGTFLNGRAIRV 224
M G LNG I V
Sbjct: 124 MNGQELNGFNISV 136
>At3g52380 [R] KOG0118 FOG: RRM domain
Length = 329
Score = 51.2 bits (121), Expect = 4e-06
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 148 SEFTLFVGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQR 207
S ++ G+L N+T L + F + L AK+++++ TG S+G+GF+ F + Q
Sbjct: 217 SPHKVYAGNLGWNLTSQGLKDAFGDQ-PGVLGAKVIYERNTGRSRGFGFISFESAENVQS 275
Query: 208 ALVEMQGTFLNGRAIRVGTTSKNK 231
AL M G + GRA+R+ S+ +
Sbjct: 276 ALATMNGVEVEGRALRLNLASERE 299
>At5g04280 [R] KOG0118 FOG: RRM domain
Length = 310
Score = 50.8 bits (120), Expect = 6e-06
Identities = 26/73 (35%), Positives = 41/73 (55%), Gaps = 1/73 (1%)
Query: 152 LFVGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVE 211
+FVG L+P VT+ L F SR+ L+ +I+ ++ TG S+G+GF+ F + ++ E
Sbjct: 9 IFVGGLSPEVTDRDLERAF-SRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 212 MQGTFLNGRAIRV 224
M G R I V
Sbjct: 68 MHGRDFGDRVISV 80
>At2g35410 [R] KOG0118 FOG: RRM domain
Length = 308
Score = 50.8 bits (120), Expect = 6e-06
Identities = 50/185 (27%), Positives = 81/185 (43%), Gaps = 22/185 (11%)
Query: 53 QNST---QLYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVE 109
QNS +L++ +L + NDI ++ G N V++I+ + N G+ FV
Sbjct: 89 QNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVN-NVEIIRQKDGK------NRGFAFVT 141
Query: 110 FPNQMAASNALMK------SGLRVPMDSNYALKLNWASF-----ATAPG-SEFTLFVGDL 157
+ A A+ K SG + + K + APG + L+V +L
Sbjct: 142 MASGEEAQAAIDKFDTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAPGDTRHKLYVSNL 201
Query: 158 APNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFL 217
A L ELF + + ++A++VF G S GYGFV F E + A+ ++ G +
Sbjct: 202 AWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEI 261
Query: 218 NGRAI 222
GR I
Sbjct: 262 MGRPI 266
>At1g74230 [R] KOG0118 FOG: RRM domain
Length = 289
Score = 50.8 bits (120), Expect = 6e-06
Identities = 30/77 (38%), Positives = 46/77 (58%), Gaps = 2/77 (2%)
Query: 148 SEFTLFVGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQR 207
S +FVG ++ + E L E F S+Y ++AKI+ D+ TG S+G+ FV F + E
Sbjct: 32 SSSKIFVGGISYSTDEFGLREAF-SKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASN 90
Query: 208 ALVEMQGTFLNGRAIRV 224
A+ ++ G L+GR IRV
Sbjct: 91 AM-QLDGQDLHGRRIRV 106
>Hs5032069 [A] KOG0131 Splicing factor 3b subunit 4
Length = 424
Score = 50.1 bits (118), Expect = 1e-05
Identities = 49/191 (25%), Positives = 78/191 (40%), Gaps = 26/191 (13%)
Query: 50 GPIQNSTQ---LYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYC 106
GPI Q +Y+G L+ +E + ++ G ++ + P + GY
Sbjct: 4 GPISERNQDATVYVGGLDEKVSEPLLWELFLQAGP------VVNTHMPKDRVTGQHQGYG 57
Query: 107 FVEFPNQMAASNA--------LMKSGLRVPMDSNYALKLNWASFATAPGSEFTLFVGDLA 158
FVEF ++ A A L +RV S + L+ + +F+G+L
Sbjct: 58 FVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA---------NIFIGNLD 108
Query: 159 PNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLN 218
P + E L++ F + KI+ D TG SKGY F+ F + A+ M G +L
Sbjct: 109 PEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLC 168
Query: 219 GRAIRVGTTSK 229
R I V K
Sbjct: 169 NRPITVSYAFK 179
>Hs13644124 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 710
Score = 50.1 bits (118), Expect = 1e-05
Identities = 47/170 (27%), Positives = 78/170 (45%), Gaps = 16/170 (9%)
Query: 55 STQLYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPNQM 114
S L + +L+ TE ++ ++ E +K+ ++ N + GY F+EF +
Sbjct: 485 SKTLVLSNLSYSATEETLQEVF----EKATFIKVPQNQNGK------SKGYAFIEFASFE 534
Query: 115 AASNALMKSGLRVPMDSNYALKLNWASFATAPGSE--FTLFVGDLAPNVTEAQLFELFIS 172
A AL R L+L + S+ TLFV L+ + TE L E F
Sbjct: 535 DAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESF-- 592
Query: 173 RYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTFLNGRAI 222
++ A+IV D+ TG SKG+GFV F +E + + A M+ ++G +
Sbjct: 593 --DGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKV 640
>At5g47620 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 404
Score = 50.1 bits (118), Expect = 1e-05
Identities = 42/184 (22%), Positives = 89/184 (47%), Gaps = 24/184 (13%)
Query: 55 STQLYMGDLNPDWTENDIKSIWSMLGEPNVQVKLIKSSNPNKSHAVNNSGYCFVEFPNQM 114
S +L++G ++ + +E+ ++ + GE ++ ++K ++ G+ FV F +
Sbjct: 5 SCKLFIGGISWETSEDRLRDYFHSFGEV-LEAVIMKDRATGRAR-----GFGFVVFADPN 58
Query: 115 AASNALMKSGL----------RVPMDSNYALKLNWASFATAPGSEFT--LFVGDLAPNVT 162
A ++ + VP D + + +S +PG + +FVG LA +VT
Sbjct: 59 VAERVVLLKHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVT 118
Query: 163 EAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALVEMQGTF--LNGR 220
EA+ F+ + +++ + +++D T +G+GF+ + +E + L Q TF LNG+
Sbjct: 119 EAE-FKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVL---QKTFHELNGK 174
Query: 221 AIRV 224
+ V
Sbjct: 175 MVEV 178
>At5g25060 [R] KOG0151 Predicted splicing regulator contains RRM SWAP and RPR
domains
Length = 944
Score = 50.1 bits (118), Expect = 1e-05
Identities = 26/86 (30%), Positives = 43/86 (49%), Gaps = 9/86 (10%)
Query: 312 DPNNTTVFIGGLSTLITEDELRSYFQPFGQIVYVKIPVGK---------GCGFVQYVDRI 362
DP T +++G LS + E+ L F FG I VKI + CGFV +++R
Sbjct: 173 DPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFVSFMNRA 232
Query: 363 SAETAISKMQGFPIGNSRIRLSWGRS 388
+ A +MQG + +++ WG++
Sbjct: 233 DGQAAKDEMQGIIVYEYELKIGWGKA 258
>At2g36660 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 609
Score = 50.1 bits (118), Expect = 1e-05
Identities = 25/74 (33%), Positives = 44/74 (58%), Gaps = 1/74 (1%)
Query: 151 TLFVGDLAPNVTEAQLFELFISRYSSTLNAKIVFDQFTGVSKGYGFVKFVNEMEQQRALV 210
+L+VGDL P+VTE L++ F + + S + ++ D +G S YG+ F++ + A+
Sbjct: 25 SLYVGDLHPSVTEGILYDAF-AEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIE 83
Query: 211 EMQGTFLNGRAIRV 224
+ + LNG+ IRV
Sbjct: 84 KKNNSLLNGKMIRV 97
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.132 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,408,196
Number of Sequences: 60738
Number of extensions: 819405
Number of successful extensions: 3989
Number of sequences better than 1.0e-05: 113
Number of HSP's better than 0.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 89
Number of HSP's that attempted gapping in prelim test: 3374
Number of HSP's gapped (non-prelim): 469
length of query: 589
length of database: 30,389,216
effective HSP length: 112
effective length of query: 477
effective length of database: 23,586,560
effective search space: 11250789120
effective search space used: 11250789120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)