ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI3963 good I KOG2419 Lipid transport and metabolism Phosphatidylserine decarboxylase
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI3963 1381250 1384357 1036
(1036 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YGR170w [I] KOG2419 Phosphatidylserine decarboxylase 732 0.0
SPAC31G5.15 [I] KOG2419 Phosphatidylserine decarboxylase 407 e-113
At4g25970 [I] KOG2419 Phosphatidylserine decarboxylase 243 1e-63
At5g57190 [I] KOG2419 Phosphatidylserine decarboxylase 239 2e-62
CE00834 [I] KOG2420 Phosphatidylserine decarboxylase 76 3e-13
Hs13489112 [I] KOG2420 Phosphatidylserine decarboxylase 67 1e-10
7301094 [I] KOG2420 Phosphatidylserine decarboxylase 62 4e-09
SPAC25B8.03 [I] KOG2420 Phosphatidylserine decarboxylase 61 1e-08
>YGR170w [I] KOG2419 Phosphatidylserine decarboxylase
Length = 1138
Score = 732 bits (1890), Expect = 0.0
Identities = 356/657 (54%), Positives = 483/657 (73%), Gaps = 13/657 (1%)
Query: 381 SFEVSKREHSLGVVVMTLKSITNLPLVKKKMSKTGYDMDPFVIITFGRRVFKSSYKRHTL 440
+F +SK+EH++GVV M + +I NLP ++ ++SKT Y+MDPF++I+FGRRVFK+S+++HTL
Sbjct: 483 NFFISKKEHAMGVVFMHIGAIKNLPALRNRLSKTNYEMDPFIVISFGRRVFKTSWRKHTL 542
Query: 441 NPEYNEVCAFEVYPEERHFELVLKVLDKDAFSFHDKIATASISWTSLVGKYQI-GEIMNI 499
NPE+NE AFEV+P E +F +KV+DKD+FSF+D +A ++W ++ + Q E +
Sbjct: 543 NPEFNEYAAFEVFPHETNFAFSIKVVDKDSFSFNDDVAKCELAWFDMLQQQQHENEWIPY 602
Query: 500 DLPLNLN--KTSDEHNSVASLNFQFLPYSELKRHFWTNSLDSLTTQKDFDIVELGMLLEQ 557
++PL+L V +F+++ Y LK+ FW ++D+ + DI+++ + LE+
Sbjct: 603 EIPLDLTVEPAHAPKQPVLYSSFKYVSYPFLKKSFWKEAVDTSVNLERLDIIQVMLYLER 662
Query: 558 IGQFTSNEINEFFHFYNKVPWSREKLTISELVVYLENWTENNKTSSPFNNIQTCPLCGRK 617
+G FT + E F +NK W+ + +T S+LV L++W + S+ F I TCP C R
Sbjct: 663 LGSFTMADSFELFQHFNKSAWAGQSITRSQLVEGLQSW----RKSTNFKRIWTCPRCMRS 718
Query: 618 VHKSRNVVNSKLNKENDLIAHFAICQLKRAHSRRTFLTPSYVSINSASRRWFSKFLIKLT 677
+RN SKL ENDLI HFAIC + H L PSYVS AS+RWFSK LIKLT
Sbjct: 719 CKPTRNARRSKLVLENDLITHFAICTFSKEHKT---LKPSYVSSAFASKRWFSKVLIKLT 775
Query: 678 YGKYALGSNNANILVQDRDSGIIIEEKISAHVKVGIRIIYNGKGVRSKKFKNLLRKQTIK 737
YGKYALGSNNANILVQDRD+GIIIEEKISAHVK+G+RIIYNGK SKKF++LL+ +I+
Sbjct: 776 YGKYALGSNNANILVQDRDTGIIIEEKISAHVKLGMRIIYNGKSPESKKFRSLLKTLSIR 835
Query: 738 QGKKFDAPSSVKYIPSFIRFHSLDMSECLEVEYKSFNDFFYRKLKPGSRIPESTIPGILL 797
QGKKFD+ +S K I FI+FHSLD+S+C + ++K+FN+FFYRKLKPGSR+PES IL
Sbjct: 836 QGKKFDSTASAKQIEPFIKFHSLDLSQCRDKDFKTFNEFFYRKLKPGSRLPESNNKEILF 895
Query: 798 SPADCRATVFPTVHKAQEIWIKGRQFSVSKLLGDCPHKPQ-FTEHNSSIAIFRLAPQDYH 856
SPAD R TVFPT+ +++EIW+KGR+FS+ KL + + P+ F ++N SI IFRLAPQDYH
Sbjct: 896 SPADSRCTVFPTIQESKEIWVKGRKFSIKKLANN--YNPETFNDNNCSIGIFRLAPQDYH 953
Query: 857 RFHAPCDGVVGKVYNISGEYYTVNPMAIRTKLDVFGENIRCIVPITSPEFGTILYIAVGA 916
RFH+PC+G +GK + GEYYTVNPMA+R++LDVFGENIR I+PI SP+FG +LYI +GA
Sbjct: 954 RFHSPCNGTIGKPVYVDGEYYTVNPMAVRSELDVFGENIRVIIPIDSPQFGKLLYIPIGA 1013
Query: 917 MMVGSIILTCKEGDTIVRGQEMGYFKFGGSTIIVLVPHQKIFFDSDLIKNSDEMVETLLK 976
MMVGSI+LTCKE D + GQE+GYFKFGGSTII+++PH FDSDL+KNS E +ETL+K
Sbjct: 1014 MMVGSILLTCKENDVVESGQELGYFKFGGSTIIIIIPHNNFMFDSDLVKNSSERIETLVK 1073
Query: 977 VGMSVGHIPSQPEHPRIKKHIEDKVEIERIKRIITVTDENVSALGSVPWEYDQLKNL 1033
VGMS+GH + E RI+ ++D +IERIKR I+V+DEN + G+V WEY L+ +
Sbjct: 1074 VGMSIGHTSNVNELKRIRIKVDDPKKIERIKRTISVSDENAKSTGNVTWEYHTLREM 1130
Score = 52.4 bits (124), Expect = 4e-06
Identities = 27/88 (30%), Positives = 45/88 (50%), Gaps = 8/88 (9%)
Query: 7 RKRGKDEVLDVNHSRNSLTLQVQVHQARNF-TINEAVCNPLCLXXXXXXXXXXXXXXXST 65
RKRGK++ + +L L++ V QA N + CNP+C ++
Sbjct: 7 RKRGKNK-------KPTLILKIHVIQAENIEALKTFNCNPVCFVTTNTFYSQKTNKLKNS 59
Query: 66 QPQWKSTLKLKLSNSPLSQYLRLIIYDS 93
W TL++KL +P S++LR+I+YD+
Sbjct: 60 NTHWNQTLRIKLPRNPTSEWLRIIVYDA 87
>SPAC31G5.15 [I] KOG2419 Phosphatidylserine decarboxylase
Length = 980
Score = 407 bits (1046), Expect = e-113
Identities = 262/700 (37%), Positives = 366/700 (51%), Gaps = 125/700 (17%)
Query: 391 LGVVVMTLKSITNLPLVKKKMSKTGYDMDPFVIITFGRRVFKSSYKRHTLNPEYNEVCAF 450
LG V + + S++NLP +K + +TG+DMDPFVI F + +F++ + RH LNP YNE F
Sbjct: 279 LGFVFLEIISVSNLPPLKN-VFRTGFDMDPFVITAFSKNIFRTKWLRHNLNPVYNEKFLF 337
Query: 451 EVYPEERHFELVLKVLDKDAFSFHDKIATASIS--------------------------- 483
EV E +++LV KV+D D S +D IA S +
Sbjct: 338 EVGAFESNYDLVFKVVDHDKMSLNDSIAVGSFNVQSIINSSAQVDPETGLYSFNIETSSP 397
Query: 484 --------------------WTSLVGKYQIGEIMNIDLPLNL---NKTSDEHNSVASLNF 520
++S VGK +I+ +PL L + S + S
Sbjct: 398 SQDTSSKAEDSPTVQKIADDFSSAVGKDLRTDIIEQIIPLTLCCKHDFSTPRDVKLSFKA 457
Query: 521 QFLPYSELKRHFWTNSLDSLTTQKDFDIVELGM--LLEQIGQFTSNEINEFFHFYNKVPW 578
F P + L++ FW L +D I +LGM +L+ +G N + + Y ++
Sbjct: 458 MFFPIAALRQKFWRVMLAQYGDIEDGHIGKLGMYAVLDTLGSNIPNSMVD--DIYTELSS 515
Query: 579 SR-----EKLTISELVVYLENWTE-----------------NNKTSSPFNNIQT------ 610
+ +T+ E V+ LE + +N+ S P QT
Sbjct: 516 KNHDDTSDSITVDEAVICLERLVDLVCHQDQQATQTPQSPSSNEESGPGTPTQTSDQYED 575
Query: 611 ------------------CPLCGRKVHKSRNVVNSKLNKENDLIA--HFAICQLKRAHSR 650
CPLC + KL+K N A H A C
Sbjct: 576 SEDSRNFPSKLYLVYLSNCPLC----------LKFKLSKVNQQKATVHLATCASHDWKRV 625
Query: 651 RTFLTPSYVSINSASRRWFSKFLIKLTYGKYALGSNNANILVQDRDSGIIIEEKISAHVK 710
+ SYVS+N A RRWFSK K+ YG +GS +A LVQ+R +G I EEK++A+V+
Sbjct: 626 DRLMMTSYVSLNQAQRRWFSKAFAKVVYGSSKVGSTSATTLVQNRQTGQIQEEKMNAYVR 685
Query: 711 VGIRIIYNG---KGVRSKKFKNLLRKQTIKQGKKFDAPSSVKYIPSFIRFHSLDMSEC-L 766
+GIR++Y G + + K K +LR T+KQG K+D+P SVK I FIRF L+M+E +
Sbjct: 686 IGIRLLYRGIRNRRIEGSKVKKILRSLTLKQGMKYDSPISVKEIKPFIRFFDLNMNEVDM 745
Query: 767 EVE-YKSFNDFFYRKLKPGSR---IPESTIPGILLSPADCRATVFPTVHKAQEIWIKGRQ 822
V +K+FN+FFYRKLKPGSR P++ P IL+SPAD R + + KA WIKG +
Sbjct: 746 PVGGFKTFNEFFYRKLKPGSRPCAFPDN--PDILVSPADSRIVAYECIEKATTYWIKGTE 803
Query: 823 FSVSKLLGDCPHKPQFTEHNSSIAIFRLAPQDYHRFHAPCDGVVGKVYNISGEYYTVNPM 882
F+V +LLG +F SI I RLAPQDYHRFH+P +G +G + I G+YYTVNPM
Sbjct: 804 FTVERLLGYSNEAQRFV--GGSICISRLAPQDYHRFHSPVNGCIGPITKIEGQYYTVNPM 861
Query: 883 AIRTKLDVFGENIRCIVPITSPEFGTILYIAVGAMMVGSIILTCKEGDTIVRGQEMGYFK 942
AIR+ LDVFGEN+R ++PI S EFG ++ +AVGAMMVGS +LT EG + R E+GYFK
Sbjct: 862 AIRSYLDVFGENVRVLIPIDSNEFGKVMLVAVGAMMVGSTVLTVDEGKIVQRSDELGYFK 921
Query: 943 FGGSTIIVLVPHQKIFFDSDLIKNSDEMVETLLKVGMSVG 982
FGGST+I L FD DL++NS +ETL+K+G +G
Sbjct: 922 FGGSTVITLFEPNVTSFDEDLLRNSKTKIETLVKMGERIG 961
>At4g25970 [I] KOG2419 Phosphatidylserine decarboxylase
Length = 628
Score = 243 bits (620), Expect = 1e-63
Identities = 158/427 (37%), Positives = 231/427 (54%), Gaps = 49/427 (11%)
Query: 583 LTISELVVYLENWTENNKTSSPFNNIQTCPLCGRKVHKSRNVVNSKLNKENDLIAHFAIC 642
+TI EL L E I +CP+CG + +L+K N +I H +C
Sbjct: 211 VTIDELAALLAVQQEQEPI------INSCPVCGEAL---------QLDKLNAMI-HMTLC 254
Query: 643 QLKRAHSRRTFLTPSYVSINSASRRWFSKFLIKLTYGKYALGSNN----ANILVQDRDSG 698
+ ++ +T +++ AS W K Y +G N ++I+V DR +
Sbjct: 255 FDEGTGNQ---MTGGFLTDRQASYGWMFKLSEWTHLSTYDVGLNTGSSASHIVVIDRKTK 311
Query: 699 IIIEEKISAHVKVGIRIIYNGK-GVR--SKKFKNLLRKQTIKQGKKFDAPSSVKYIPSFI 755
++EE I + + + +R IY K G+R + K +L+ + KQGKK ++ S + IPSF+
Sbjct: 312 RLVEELIDSKIVMSMRAIYQSKIGLRLMDQGAKEILQNLSEKQGKKMNSVESAQNIPSFL 371
Query: 756 RFHSLDMSECLEVEY------------------KSFNDFFYRKLKPGSR-IPESTIPGIL 796
F D EV+Y ++FN+FF R+LKPG+R I +
Sbjct: 372 EFFK-DQINMAEVKYPLDHFKVRKGNSWWSFYLQTFNEFFVRELKPGARPIACMDQDDVA 430
Query: 797 LSPADCRATVFPTVHKAQEIWIKGRQFSVSKLLGDCPHKPQFTEHNSSIAIFRLAPQDYH 856
+S ADCR F +V + WIKGR+FS+ LLG+ F + S+ IFRLAPQDYH
Sbjct: 431 VSAADCRLMAFQSVDDSTRFWIKGRKFSIKGLLGNDVQSDAFLD--GSLVIFRLAPQDYH 488
Query: 857 RFHAPCDGVVGKVYNISGEYYTVNPMAIRTKL-DVFGENIRCIVPITSPEFGTILYIAVG 915
RFH+P GV+ K N+SG YTVNP+A+ +K +VF EN R IV I++ EFG + ++A+G
Sbjct: 489 RFHSPVSGVIEKFVNVSGSLYTVNPIAVNSKYCNVFTENKRTIVIISTAEFGKVAFVAIG 548
Query: 916 AMMVGSIILTCKEGDTIVRGQEMGYFKFGGSTIIVLVPHQKIFFDSDLIKNSDEMVETLL 975
A MVGSI +EGD + +G E+GYF FGGST+I + I D DL+ NS +ETL+
Sbjct: 549 ATMVGSISFVRQEGDHVKKGDELGYFSFGGSTVICVFEKDSIKIDEDLLANSARSLETLV 608
Query: 976 KVGMSVG 982
VGM +G
Sbjct: 609 TVGMQLG 615
>At5g57190 [I] KOG2419 Phosphatidylserine decarboxylase
Length = 615
Score = 239 bits (610), Expect = 2e-62
Identities = 153/414 (36%), Positives = 225/414 (53%), Gaps = 34/414 (8%)
Query: 583 LTISELVVYLENWTENNKTSSPFNNIQTCPLCGRKVHKSRNVVNSKLNKENDLIAHFAIC 642
+TI EL L E I CP+CG + V+ KLN + H +C
Sbjct: 210 VTIDELAALLALQQEQEPI------INNCPVCGEALQ-----VSDKLNA----MIHMTLC 254
Query: 643 QLKRAHSRRTFLTPSYVSINSASRRWFSKFLIKLTYGKYALGSNNAN----ILVQDRDSG 698
+ ++ +T +++ AS W K Y +G N + I+V DR S
Sbjct: 255 FDEGTGNQ--VMTGGFLTDRQASYGWMFKLSEWTHLSTYDVGLNTGSSASYIVVIDRKSK 312
Query: 699 IIIEEKISAHVKVGIRIIYNGK-GVR--SKKFKNLLRKQTIKQGKKFDAPSSVKYIPSFI 755
++EE I + + + +R IY K G+R + K +L++ + KQGKK + S + IP F+
Sbjct: 313 RLVEELIDSKIVLSMRAIYQSKIGLRLMDQGAKEILQRLSEKQGKKMSSVESAQKIPRFL 372
Query: 756 RFHSLDMSECLEVEY-----KSFNDFFYRKLKPGSR-IPESTIPGILLSPADCRATVFPT 809
F D EV+Y K+FN+FF R+LKPG+R I + + ADCR F +
Sbjct: 373 EFFK-DQINMAEVKYPLQHFKTFNEFFIRELKPGARPIACMNRNDVAVCAADCRLMAFQS 431
Query: 810 VHKAQEIWIKGRQFSVSKLLGDCPHKPQFTEHNSSIAIFRLAPQDYHRFHAPCDGVVGKV 869
V + WIKG++FS+ LLG + F + S+ IFRLAPQDYHRFH P GV+ +
Sbjct: 432 VEDSTRFWIKGKKFSIRGLLGKNVNPNAFLD--GSLVIFRLAPQDYHRFHVPVSGVIEQF 489
Query: 870 YNISGEYYTVNPMAIRTKL-DVFGENIRCIVPITSPEFGTILYIAVGAMMVGSIILTCKE 928
++SG YTVNP+A+ +K +VF EN R + I++ EFG + ++A+GA MVGSI KE
Sbjct: 490 VDVSGSLYTVNPIAVNSKYCNVFTENKRTVAIISTAEFGKVAFVAIGATMVGSINFVRKE 549
Query: 929 GDTIVRGQEMGYFKFGGSTIIVLVPHQKIFFDSDLIKNSDEMVETLLKVGMSVG 982
G+ + +G E+GYF FGGST+I + I D+DL+ NS +ETL+ VGM +G
Sbjct: 550 GEHVKKGDELGYFSFGGSTVICVFEKDAIGIDNDLLVNSGRSLETLVSVGMQLG 603
>CE00834 [I] KOG2420 Phosphatidylserine decarboxylase
Length = 333
Score = 75.9 bits (185), Expect = 3e-13
Identities = 67/221 (30%), Positives = 98/221 (44%), Gaps = 29/221 (13%)
Query: 754 FIRFHSLDMSECLEVEYK---SFNDFFYRKLKPGSRIPESTIPGILLSPADCRATVFPTV 810
F R + M +C++ ++K SF FF RKLK +R P S P L+SPAD F V
Sbjct: 90 FARMYDCRMDDCVDPDFKNYPSFAAFFNRKLKESTR-PISASP--LVSPADGTVLHFGKV 146
Query: 811 HKAQEIWIKGRQFSVSKLLGDCPHKPQFTEHNSSIAIFRLAPQDYHRFHAPCDGVVGKVY 870
+ ++KG + V K LGD PQ E + + LAP DYH FH+P V +
Sbjct: 147 EDNKIEYVKGHDYDVDKFLGDVD-LPQKDELDLYQVVIYLAPGDYHAFHSPARWVANQCR 205
Query: 871 NISGEYYTVNPMAIRTKLDVFGENIRCIVPITSPEFGTILYIAVGAMMVGSIILTCKEG- 929
++ G +V P + +F N R +V S G AV A VG I++ +
Sbjct: 206 HVPGLLLSVRPTLLSHVPHLFCLNER-VVLNGSWRHGFFSMSAVAATNVGDIVVDAEPSL 264
Query: 930 -DTIVR-------------------GQEMGYFKFGGSTIIV 950
IVR G+ +G F+ G + ++V
Sbjct: 265 RTNIVRRKTQKIMNTETEIHAPYVSGERVGEFRLGSTIVLV 305
>Hs13489112 [I] KOG2420 Phosphatidylserine decarboxylase
Length = 375
Score = 67.4 bits (163), Expect = 1e-10
Identities = 66/233 (28%), Positives = 98/233 (41%), Gaps = 48/233 (20%)
Query: 770 YKSFNDFFYRKLKPGSRIPESTIPGILLSPADCRATVFPTVHKAQEIWIKGRQFSVSKLL 829
Y++ ++FF RKLKP +R P + ++ SP+D R F V + +KG +S+ L
Sbjct: 128 YRNLSEFFRRKLKPQAR-PVCGLHSVI-SPSDGRILNFGQVKNCEVEQVKGVTYSLESFL 185
Query: 830 G------DCPHKPQ----------FTEHNSSI--AIFRLAPQDYHRFHAPCDGVVGKVYN 871
G D P P T + + + LAP DYH FH+P D V +
Sbjct: 186 GPRMCTEDLPFPPAASCDSFKNQLVTREGNELYHCVIYLAPGDYHCFHSPTDWTVSHRRH 245
Query: 872 ISGEYYTVNPMAIRTKLDVFGENIRCIVPITSPEFGTILYIAVGAMMVGSIIL------- 924
G +VNP R ++F N R +V + G AVGA VGSI +
Sbjct: 246 FPGSLMSVNPGMARWIKELFCHNER-VVLTGDWKHGFFSLTAVGATNVGSIRIYFDRDLH 304
Query: 925 -------------------TCKEGDTIVRGQEMGYFKFGGSTIIVLVPHQKIF 958
T +EG + +G+ +G F GSTI+++ K F
Sbjct: 305 TNSPRHSKGSYNDFSFVTHTNREGVPMRKGEHLGEFNL-GSTIVLIFEAPKDF 356
>7301094 [I] KOG2420 Phosphatidylserine decarboxylase
Length = 447
Score = 62.4 bits (150), Expect = 4e-09
Identities = 73/277 (26%), Positives = 111/277 (39%), Gaps = 63/277 (22%)
Query: 760 LDMSECLEVEYKSFN---DFFYRKLKPGSRIPESTIPGILLSPADCRATVFPTVHKAQEI 816
+++SE + EY+ +N +FF R LK G R+ + P L+SPAD + F + +
Sbjct: 178 VNLSEAMYPEYEHYNSLAEFFTRPLKEGVRVIDQQAP--LVSPADGKVLHFGSASDSLIE 235
Query: 817 WIKGRQFSVSKLLGDCPHKPQFTEHNSSI---------------AIFRLAPQDYHRFHAP 861
+KG +S+ LG Q S + LAP DYHRFH+P
Sbjct: 236 QVKGVSYSIEDFLGPLETVEQANSGASYAQALKKKSDGSTELYQCVIYLAPGDYHRFHSP 295
Query: 862 CDGVVGKVYNISGEYYTVNPMAIRTKLDVFGENIRCIVPITSPEFGTILYIAVGAMMVGS 921
+ SGE +V+P +F N R ++ + + G Y AVGA VGS
Sbjct: 296 TAWKPTIRRHFSGELLSVSPKVAGWLPGLFCLNER-VLYMGQWKHGFFSYTAVGATNVGS 354
Query: 922 IIL---------------------TCKEGDTIV-------------RGQEMGYFKFGGST 947
+ + + E D +V +G +G F GST
Sbjct: 355 VEIYMDADLKTNRWTGFNVGKHPPSTYEYDELVLNKELTEAPKEFGKGDLVGQFNM-GST 413
Query: 948 IIVLVPHQKIFFDSDLIKNSDEMVETLLKVGMSVGHI 984
I++L K F D + ++VG S+GHI
Sbjct: 414 IVLLFEAPKNF-------KFDIIAGQKIRVGESLGHI 443
>SPAC25B8.03 [I] KOG2420 Phosphatidylserine decarboxylase
Length = 516
Score = 60.8 bits (146), Expect = 1e-08
Identities = 39/135 (28%), Positives = 63/135 (45%), Gaps = 31/135 (22%)
Query: 846 AIFRLAPQDYHRFHAPCDGVVGKVYNISGEYYTVNPMAIRTKLDVFGENIRCIVPITSPE 905
++ LAP DYHRFH+P D V+ + SGE ++V+P R ++F N R + + E
Sbjct: 360 SVIYLAPGDYHRFHSPADWVIESRRHFSGELFSVSPFLARRLHNLFVLNER-VALLGRYE 418
Query: 906 FGTILYIAVGAMMVGSIILTCK------------------------------EGDTIVRG 935
G + I VGA VGSI++ C +G + RG
Sbjct: 419 HGFMSMIPVGATNVGSIVINCDPTLSTNRLVLRKKSLGTFQEAVYKNASPVLDGMPVSRG 478
Query: 936 QEMGYFKFGGSTIIV 950
+++G F+ G + ++V
Sbjct: 479 EQVGGFQLGSTVVLV 493
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.320 0.136 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,296,702
Number of Sequences: 60738
Number of extensions: 2337199
Number of successful extensions: 5288
Number of sequences better than 1.0e-05: 8
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 5254
Number of HSP's gapped (non-prelim): 13
length of query: 1036
length of database: 30,389,216
effective HSP length: 117
effective length of query: 919
effective length of database: 23,282,870
effective search space: 21396957530
effective search space used: 21396957530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)