ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI3969 good L KOG2732 Replication, recombination and repair DNA polymerase delta, regulatory subunit 55
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI3969 1384844 1386118 425
(425 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YJR006w [L] KOG2732 DNA polymerase delta regulatory subunit 55 483 e-136
At2g42120 [L] KOG2732 DNA polymerase delta regulatory subunit 55 216 7e-56
Hs5453924 [L] KOG2732 DNA polymerase delta regulatory subunit 55 214 3e-55
SPAC27E2.05 [L] KOG2732 DNA polymerase delta regulatory subunit 55 213 6e-55
7292154 [L] KOG2732 DNA polymerase delta regulatory subunit 55 209 6e-54
CE05595 [L] KOG2732 DNA polymerase delta regulatory subunit 55 123 5e-28
Hs20545789 [L] KOG2732 DNA polymerase delta regulatory subunit 55 109 9e-24
ECU09g0770 [L] KOG2732 DNA polymerase delta regulatory subunit 55 101 2e-21
>YJR006w [L] KOG2732 DNA polymerase delta regulatory subunit 55
Length = 487
Score = 483 bits (1243), Expect = e-136
Identities = 241/445 (54%), Positives = 315/445 (70%), Gaps = 23/445 (5%)
Query: 2 KNRNYDMQFYKMYQYRLNVLRNRVESCCQSKWNSEFRLQGRKVVKKSKVLDIQAGEPCWC 61
K R+Y Q+Y +YQYRL R RV C +W++ F L G+ V+KK KVLDIQ +PCWC
Sbjct: 45 KKRDYGSQYYHIYQYRLKTFRERVLKECDKRWDAGFTLNGQLVLKKDKVLDIQGNQPCWC 104
Query: 62 IGTVYCEMQYKPNILQEIVDDTYGAPDLIKSYTDPE-GTDEIMLDDESGRVILVGELVRK 120
+G++YCEM+YKPN+L E+++DTYGAPDL KSYTD E G+DEIML+DESGRV+LVG+ +R
Sbjct: 105 VGSIYCEMKYKPNVLDEVINDTYGAPDLTKSYTDKEGGSDEIMLEDESGRVLLVGDFIRS 164
Query: 121 TPFVSGTVVGILGMEADAGTFQVLDICYPQALPQKSLP------PLPGKKIALISGINAT 174
TPF++G VVGILGMEA+AGTFQVLDICYP LPQ P P G KIAL+SG+N
Sbjct: 165 TPFITGVVVGILGMEAEAGTFQVLDICYPTPLPQNPFPAPIATCPTRG-KIALVSGLNLN 223
Query: 175 PRSPILSLRMQLLQDALTGELSTN-SGLNEVSRCIILGNSLN---PGENRQDLPGSLREF 230
SP LR+++L++ L G ++ ++ + R +I GNS++ N+ +L SL EF
Sbjct: 224 NTSPDRLLRLEILREFLMGRINNKIDDISLIGRLLICGNSVDFDIKSVNKDELMISLTEF 283
Query: 231 TPFLSNILKSLPVDLLPGENDPSDRSLPQQPLHKALFDDALSPYFDLENADIFHSVSNPY 290
+ FL NIL S+ VD++PG NDPSD+SLPQQP HK+LFD +L YF+ N +I + V+NPY
Sbjct: 284 SKFLHNILPSISVDIMPGTNDPSDKSLPQQPFHKSLFDKSLESYFNGSNKEILNLVTNPY 343
Query: 291 WFDIEGLQLLATSGQQINDITKYVIPFYE----ETKSLKG------DTIDHRLDLAEATL 340
F G+ +LA SG+ INDI KYVIP + E K +G D I+HRLDL E T+
Sbjct: 344 EFSYNGVDVLAVSGKNINDICKYVIPSNDNGESENKVEEGESNDFKDDIEHRLDLMECTM 403
Query: 341 KWQNIAPTAPDTLWCYPYSDNDPFILKEWPHVYIIGNQPEFGYRKTQLEGAVEVLIVSVP 400
KWQNIAPTAPDTLWCYPY+D DPF+L +WPHVYI+ NQP FG R ++ G + I+SVP
Sbjct: 404 KWQNIAPTAPDTLWCYPYTDKDPFVLDKWPHVYIVANQPYFGTRVVEI-GGKNIKIISVP 462
Query: 401 EFSTTGQYLVLDLDSLVPEVHTIAV 425
EFS+TG ++LDL++L E I +
Sbjct: 463 EFSSTGMIILLDLETLEAETVKIDI 487
>At2g42120 [L] KOG2732 DNA polymerase delta regulatory subunit 55
Length = 456
Score = 216 bits (549), Expect = 7e-56
Identities = 145/437 (33%), Positives = 231/437 (52%), Gaps = 54/437 (12%)
Query: 9 QFYKMYQYRLNVLRNRVESCCQSKWNSEFRLQGRKVVKKSKVLDIQAGEPCWCIGTVYCE 68
Q+ ++Y RL+++R + S + W S + KVL ++ G+ C +GT++
Sbjct: 45 QYSQIYFARLHLMRTLLYSLAPT-WKSHLPV--------CKVLGLEKGKECIIVGTLFKH 95
Query: 69 MQYKPNILQEIVDDTYGAPDLIKSYTDPEGTDEIMLDDESGRVILVGELVRKTPFVSGTV 128
M+ KP +L E + P L+K + D ++L+DESGRV L G + +V+G V
Sbjct: 96 MKLKPCVLDEYSKERSVTP-LVKPHNFMHPDDNLILEDESGRVKLAGSALSPAIYVTGVV 154
Query: 129 VGILGMEADAGTFQVLDICYPQALPQKSLPP--LPGKKIALISGINATPRSPILSLRMQL 186
V + G E +AG F V D+ PQ P K + L+SG+ +S L+ QL
Sbjct: 155 VALHGKETNAGEFFVEDVLEAGLPPQIERPIDLQEDKYVVLLSGLCIGSKSAN-PLQFQL 213
Query: 187 LQDALTGELSTNS--GLN-EVSRCIILGNSLN----------------PGENRQDLPGSL 227
L D +TG L GL ++ +I GNS +++ L +
Sbjct: 214 LVDHITGHLGDEEEQGLAAQIVHVVIAGNSFEFPRKLINGQVLITFNLASKDQSTLYEPI 273
Query: 228 REFTPFLSNILKSLPVDLLPGENDPSDRSLPQQPLHKALFDDALSPYFDLENADIFHSVS 287
+E LS I + VD++PG NDP++ +LPQQPL++ LF + SPY + F S +
Sbjct: 274 KELDIMLSQIAAGVSVDIMPGTNDPANFALPQQPLNRCLFPGS-SPY------NTFRSCT 326
Query: 288 NPYWFDIEGLQLLATSGQQINDITKYVIPFYEETKSLKGDTIDHRLDLAEATLKWQNIAP 347
NP+ FD++ ++ L TSGQ I+D+ KY E KS +LD E TL+W+++AP
Sbjct: 327 NPHSFDVDNIRFLGTSGQNIDDLGKY-----SEAKS--------KLDFVERTLRWRHLAP 373
Query: 348 TAPDTLWCYPYSDNDPFILKEWPHVYIIGNQPEFGYRKTQLEGAVEVLIVSVPEFSTTGQ 407
TAP+TL CYP++D DPF+++ PHVY +GNQ ++ R + V ++ +P+F TG
Sbjct: 374 TAPNTLGCYPFTDRDPFLIETCPHVYFVGNQDKYDNRLIKGSEGQLVRLICIPKFCETGI 433
Query: 408 YLVLDLDSLVPEVHTIA 424
+ ++L +L E HT++
Sbjct: 434 AVAVNLRNL--ECHTLS 448
>Hs5453924 [L] KOG2732 DNA polymerase delta regulatory subunit 55
Length = 469
Score = 214 bits (544), Expect = 3e-55
Identities = 146/433 (33%), Positives = 222/433 (50%), Gaps = 51/433 (11%)
Query: 4 RNYDMQFYKMYQYRLNVLRNRVESCCQSKWNSEFRLQGRKVVKKSKVLDIQAGEPCWCIG 63
R++ Q+ +Y RL +R +E+ Q W S V K+ ++Q E C +G
Sbjct: 44 RSFSRQYAHIYATRLIQMRPFLENRAQQHWGSG--------VGVKKLCELQPEEKCCVVG 95
Query: 64 TVYCEMQYKPNILQEIVDDTYGAPDLIKS-YTDPEGTDEIMLDDESGRVILVGELVRKTP 122
T++ M +P+IL+E+ ++ P +S Y P+ DE++L+DE R+ L G + +
Sbjct: 96 TLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPD--DELVLEDELQRIKLKGT-IDVSK 152
Query: 123 FVSGTVVGILGMEADAGTFQVLDICYPQALPQKSLPPLPGKK-IALISGINATPRSPILS 181
V+GTV+ + G D G F V D C+ PQK PPL + + L+SG+
Sbjct: 153 LVTGTVLAVFGSVRDDGKFLVEDYCFADLAPQKPAPPLDTDRFVLLVSGLGLGGGGGESL 212
Query: 182 LRMQLLQDALTGELSTNS---GLNEVSRCIILGNSLNPGENRQDLPGSLREFTP------ 232
L QLL D +TG+L VSR I+ GN L+ +D + T
Sbjct: 213 LGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKKTQAAS 272
Query: 233 ---------FLSNILKSLPVDLLPGENDPSDRSLPQQPLHKALFDDALSPYFDLENADIF 283
L + S+PVD++PGE DP++ +LPQQPLH +F A + Y L+
Sbjct: 273 VEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATA-YSTLQ----- 326
Query: 284 HSVSNPYWFDIEGLQLLATSGQQINDITKYVIPFYEETKSLKGDTIDHRLDLAEATLKWQ 343
V+NPY I+G++ L TSGQ ++DI +Y +++ L++ E TL+ +
Sbjct: 327 -LVTNPYQATIDGVRFLGTSGQNVSDIFRY-------------SSMEDHLEILEWTLRVR 372
Query: 344 NIAPTAPDTLWCYPYSDNDPFILKEWPHVYIIGNQPEFGYRKTQLEGAVEVLIVSVPEFS 403
+I+PTAPDTL CYP+ DPFI E PHVY GN P FG + + VL+V+VP+FS
Sbjct: 373 HISPTAPDTLGCYPFYKTDPFIFPECPHVYFCGNTPSFGSKIIRGPEDQTVLLVTVPDFS 432
Query: 404 TTGQYLVLDLDSL 416
T +++L SL
Sbjct: 433 ATQTACLVNLRSL 445
>SPAC27E2.05 [L] KOG2732 DNA polymerase delta regulatory subunit 55
Length = 462
Score = 213 bits (541), Expect = 6e-55
Identities = 144/456 (31%), Positives = 213/456 (46%), Gaps = 65/456 (14%)
Query: 1 MKNRNYDMQFYKMYQYRLNVLRNRVESCCQSKWNSEFRLQGRKVVKKSKVLDIQAGEPCW 60
+ + Y Q+ +Y RL LR R+ KW + RL+ +VLD+++ E CW
Sbjct: 20 LSQQTYSQQYASIYFARLTALRPRITEAASKKWPDKQRLE--------RVLDVKSDEDCW 71
Query: 61 CIGTVYCEMQYKPNILQEIVD-DTYGAPDLIKSYTDPE----GTDEIMLDDESGRVILVG 115
+ T Y KPN++ ++ T Y PE G E L+D+ GR+ G
Sbjct: 72 VVATAYMTTALKPNVMNDVTQLHTIVTTTEESPYVSPEDAASGDIEYALEDDYGRIDCSG 131
Query: 116 ELVRKTPFVSGTVVGILGMEADAGTFQVLDICYPQALPQKSLPPLPGKK------IALIS 169
+ V+G V+ +LG E + G F V+D+C+P + S+P + IA +S
Sbjct: 132 SFLYDAGVVTGVVLAVLGHEDEQGRFVVVDVCFP-GIFSHSIPMTTDESQAQPEYIAAVS 190
Query: 170 GINATPRSPILSLRMQLLQDALTGELSTNSGLN--EVSRCIILGNSLNPGENRQDL---- 223
G+ + I +++ L D L G L S + + R IILGN L P D
Sbjct: 191 GLGLS-NDGIEGIQVHQLVDFLRGTLPHVSSFSPSSIKRLIILGNCLAPSIEIADSASAS 249
Query: 224 -------------------PGSLREFTPFLSNILKSLPVDLLPGENDPSDRSLPQQPLHK 264
P + FL + S+ V L+PG D S LPQQPLH
Sbjct: 250 VPIGKKKVKRYGYDTSAYNPNPTFQLDNFLDQVCSSIDVTLMPGPYDYSSTILPQQPLHP 309
Query: 265 ALFDDALSPYFDLENADIFHSVSNPYWFDIEGLQLLATSGQQINDITKYVIPFYEETKSL 324
AL + + +V+NP W + +LATSGQ IND+ KY KS
Sbjct: 310 ALLTKS-----KVWLGSSLQTVTNPTWLSLGNHFVLATSGQNINDLRKY-----HPKKS- 358
Query: 325 KGDTIDHRLDLAEATLKWQNIAPTAPDTLWCYPYSDNDPFILKEWPHVYIIGNQPEFGYR 384
L E TL W +I PT+PDTLWCYP++D D F+++E P +Y+ GNQP+FG
Sbjct: 359 -------SLQCMENTLLWNHITPTSPDTLWCYPFTDKDTFVMEEMPDLYLCGNQPKFGC- 410
Query: 385 KTQLEGAVEVLIVSVPEFSTTGQYLVLDLDSLVPEV 420
KT + + +VSVPEF TG +++++ +L E+
Sbjct: 411 KTVINEGNRIQLVSVPEFRKTGVLVLINMHTLNVEI 446
>7292154 [L] KOG2732 DNA polymerase delta regulatory subunit 55
Length = 431
Score = 209 bits (532), Expect = 6e-54
Identities = 138/432 (31%), Positives = 214/432 (48%), Gaps = 46/432 (10%)
Query: 1 MKNRNYDMQFYKMYQYRLNVLRNRVESCCQSKWNSEFRLQGRKVVKKSKVLDIQAGEPCW 60
+K +Y QF+ +Y +RL + + Q KW + ++ +KK L + C
Sbjct: 18 LKGHDYQKQFFHLYAHRLAEMTRLLTPLAQKKWGN------KEPIKKLCELRGEQDVHCI 71
Query: 61 CIGTVYCEMQYKPNILQEIVDDTYGAPDLIK-SYTDPEGTDEIMLDDESGRVILVGELVR 119
IGT++ +KP+IL++I ++ AP + +Y+DPE D+I+L+DE RV L G+L
Sbjct: 72 LIGTIFKHQAHKPSILRDISEENQLAPQPPRQNYSDPE--DKIVLEDELQRVRLQGKLNG 129
Query: 120 KTPFVSGTVVGILGMEADAGTFQVLDICYPQALPQKSLPPLPGKKI-ALISGINATPRSP 178
+ +G V LG G F V DI + ++ PQK L P+ ++ L SG++
Sbjct: 130 QL-LATGVVCAALGGTDSDGFFNVEDILFYESGPQKPLAPIKRSRLLVLASGLDQLQAHK 188
Query: 179 ILSLRMQLLQDALTGELSTNSGLNEVSRCIILGNSLNPGE--------------NRQDLP 224
+ + L Q L G L N + R I+ GNS+ N D
Sbjct: 189 FVEA-LNLFQYWLAGSLGNNKEAGSMVRLIVAGNSVRASAMAHVPTLQVARTQANANDTV 247
Query: 225 GSLREFTPFLSNILKSLPVDLLPGENDPSDRSLPQQPLHKALFDDALSPYFDLENADIFH 284
++ + + ++ +SLPVD++PG DP++ LPQQP HK +F A F
Sbjct: 248 QAVSQLDQWFASWARSLPVDIMPGPYDPANFMLPQQPFHKCMFPQAAQ-------LATFQ 300
Query: 285 SVSNPYWFDIEGLQLLATSGQQINDITKYVIPFYEETKSLKGDTIDHRLDLAEATLKWQN 344
+V+NPY ++ ++ TSGQ ++D+ L+ ++D L+ TL W +
Sbjct: 301 AVTNPYSCRLDEALVVGTSGQNVSDL-------------LRSTSLDSALEALRCTLTWGH 347
Query: 345 IAPTAPDTLWCYPYSDNDPFILKEWPHVYIIGNQPEFGYRKTQLEGAVEVLIVSVPEFST 404
+APTAPDTL CYPY ++DPFIL+E PHVY GN F + +V VP FS
Sbjct: 348 VAPTAPDTLACYPYIESDPFILRECPHVYYAGNCESFATELHEGSEGKRTRLVCVPSFSK 407
Query: 405 TGQYLVLDLDSL 416
T V+DLD+L
Sbjct: 408 TQSVAVVDLDTL 419
>CE05595 [L] KOG2732 DNA polymerase delta regulatory subunit 55
Length = 451
Score = 123 bits (309), Expect = 5e-28
Identities = 108/448 (24%), Positives = 197/448 (43%), Gaps = 65/448 (14%)
Query: 2 KNRNYDMQFYKMYQYRLNVLRNRVESCCQSKWNSEFRLQGRKVVKKSKVLDIQAGEPCWC 61
K + Q++++Y+ RL L+ R+ N+E + G+ S++ D + E +
Sbjct: 25 KKGAFTRQYFEVYEARLKELKPRILE------NAEREI-GKGKFTHSQLSDAKQDEEIFV 77
Query: 62 IGTVYCEMQYKPNILQEIVDDTYGAPDLIKSYTDPEGT--------DEIMLDDESGRVIL 113
+G + + +P+IL+ ++++ A D + + + D I L+ + V L
Sbjct: 78 VGVIVKRIAARPSILKSLLNEDKVAYDDYEEDAEEDEVKRYAGSIEDRIELESDKQTVRL 137
Query: 114 VGELVRKTPFVSGTVVGILGMEADAGTFQVLDICYPQALPQKSLPPLPGKKIALISGINA 173
G + +G VG+LG G F V + +P K + IA +SG++
Sbjct: 138 EGN-ISMDECATGCCVGVLGKLGKEGVFHVNRLVWPSVKVPKKVAV--DGTIAFVSGLDL 194
Query: 174 T-----PRSPILSLRMQLLQDALTGELSTNSGLNEVSRCIILGNSLNPGENRQDLPGSLR 228
T R I L + + D + ++ + + R +++G + N D+ +R
Sbjct: 195 TGDLEDDRLTISGL--EFMADWMNVQVGNENQCPPIDRLVVIGPLVETKSNGCDVQSVVR 252
Query: 229 EFTPF-------------LSNILKSLP-------VDLLPGENDPSDRSLPQQPLHKALFD 268
T + I+ S+ VD+ PG DP P P+H+
Sbjct: 253 TLTLSRAEKHSSTASLITVDKIINSIAEKPLVNTVDVTPGVGDPCSSMWPLPPIHRVCL- 311
Query: 269 DALSPYFDLENADIFHSVSNPYWFDIEGLQLLATSGQQINDITKYVIPFYEETKSLKGDT 328
P + + + + V+NPY F++ GL+++ SG+ ++++ + SLK
Sbjct: 312 ----PRCGMSDKKV-NLVTNPYEFEVNGLRVMTMSGENVSELLR---------TSLKWTG 357
Query: 329 IDHRLDLAEATLKWQNIAPTAPDTLWCYPYSDNDPFILKEWPHVYIIGNQPEFGYRKTQL 388
D E +KWQ++AP PDTL +P ++ DP I+ PHV I GNQP +R +
Sbjct: 358 AD----AIENIIKWQHVAPNCPDTLDAFPVAERDPLIMDITPHVIICGNQPHAEFRHIPI 413
Query: 389 EGAVEVLIVSVPEFSTTGQYLVLDLDSL 416
+G+ L+V +P+FS T L+L L
Sbjct: 414 DGS-NCLVVCLPKFSKTRVACFLNLSDL 440
>Hs20545789 [L] KOG2732 DNA polymerase delta regulatory subunit 55
Length = 299
Score = 109 bits (272), Expect = 9e-24
Identities = 101/366 (27%), Positives = 165/366 (44%), Gaps = 73/366 (19%)
Query: 21 LRNRVESCCQSKWNSEFRLQGRKVVKKSKVLDIQAGEPCWCIGTVYCEMQYKPNILQEIV 80
+R+ +E+ Q W S VVKK + ++Q GE +GT++ M +P+ILQEI
Sbjct: 1 MRSYLENRAQQHWGSG------AVVKKLR--ELQPGEKRCVVGTLFKSMPLQPSILQEIS 52
Query: 81 DDTYGAPDLIKS-YTDPEGTDEIMLDDESGRVILVGELVRKTPFVSGTVVGILGMEADAG 139
++ P +S Y P+ D ++L+DE R+ L G + + V+G ++ + G A
Sbjct: 53 EEHNLLPQPARSKYIHPD--DVLVLEDELQRMKLKGT-IDVSKLVTGIILAVFGSPAP-- 107
Query: 140 TFQVLDICYPQALPQKSLPPLPGKKIALISGINATPRSPILSLRMQLLQDALTGELSTNS 199
+LD + + L+SG+ L QLL +TG+L
Sbjct: 108 ---LLDT---------------DRFLLLVSGLGLGGGGGESLLGTQLLVGVVTGQLRDEG 149
Query: 200 ---GLNEVSRCIILGNSLNPGENRQDLPGSLREFTPFLSNILKSLPVDLLPGENDPSDRS 256
VSR ++ GN L+ +D + +L+ ++ V+ +
Sbjct: 150 EQFSAAHVSRVVLEGNLLSHSTQSRDSINKAK----YLTKKTQAASVEAV---------- 195
Query: 257 LPQQPLHKALFDDALSPYFDLENADIFHSVSNPYWFDIEGLQLLATSGQQINDITKYVIP 316
+ L + L + S DL V PY I+G++ L TSGQ ++DI +Y
Sbjct: 196 ---KMLDEILLQLSSSVPVDL--------VIKPYQATIDGVRFLGTSGQNMSDIFRY--- 241
Query: 317 FYEETKSLKGDTIDHRLDLAEATLKWQNIAPTAPDTLWCYPYSDNDPFILKEWPHVYIIG 376
+++ L++ E TL+ ++I+PT PDTL CYP+ DPF E PHVY G
Sbjct: 242 ----------SSMEDHLEILEWTLRVRHISPTTPDTLGCYPFCKTDPFFFPECPHVYFCG 291
Query: 377 NQPEFG 382
+ P FG
Sbjct: 292 SIPSFG 297
>ECU09g0770 [L] KOG2732 DNA polymerase delta regulatory subunit 55
Length = 424
Score = 101 bits (251), Expect = 2e-21
Identities = 111/457 (24%), Positives = 198/457 (43%), Gaps = 89/457 (19%)
Query: 5 NYDMQFYKMYQYRLNVLRNRVESCCQSKWNSEFRLQGRKVVKKSKVLDIQ---AGEPCWC 61
NY+ QF + Y RL LR + ++ + +LDI+ GE C
Sbjct: 7 NYEHQFNRTYDARLMELRPYIIRSAKASGTTPVL---------DAILDIEMGRGGERCVI 57
Query: 62 IGTVYCEMQYKPNILQEIVDDTYGAPDL-IKSYTDPEGTDEIMLDDESGRV---ILVGEL 117
+GT++ KP I I + ++ K+Y E + L+D SG++ L +
Sbjct: 58 VGTLFIASDLKPTIFDRIDRKSKKIKEIEAKTYHSQEV--KYFLEDGSGKIELEFLDMKA 115
Query: 118 VRKTPFV--SGTVVGILGMEADAGTFQVLDICYPQALPQKSLPPLP-----GKKIALISG 170
V + FV +G +G+ G A+ G F D+ +P + P + LP P +K+ +SG
Sbjct: 116 VYRKHFVISTGMCIGVTGRMAEKGRFLAEDVLFPFSSP-RGLPCTPRSQGPSQKLCFVSG 174
Query: 171 INATPRSPILSLRMQLLQDALTGELSTNSGLNEVSRCIILGNSLNPGENRQDLPGSLREF 230
++ + RM ++ D L + V +I+G L G D R+
Sbjct: 175 LSIGGGNKNRE-RMMVIADYLR--------MVGVHEYVIIG-CLFGGPREVD-----RQI 219
Query: 231 TPFLSNILKSL--PVDLLPGENDPSDRSLPQQPLHKALFDDALSPYFDLENADIFHSVSN 288
L IL L + L+P D R LP +P+H LF ++ + N
Sbjct: 220 LSELDGILGYLGTSISLVPNIGDFGSRILPLEPIHPKLFASPVTSH------------PN 267
Query: 289 PYWFDIEGLQLLATSGQQINDITKYVIPFYEETKSLKGDTIDHR--LDLAE--------- 337
P ++G ++L T+ + D+ KY+ ++ + ++G+ +++ LD+AE
Sbjct: 268 PSSLVVDGRRILVTTRFVVEDLLKYLP---QDLRDVQGEAFEYKMHLDMAEIGNLVPRNM 324
Query: 338 -----------ATLKWQNIAPTAPDTLWCYPYSDNDPFILKEWPHVYIIGNQPEFGYRKT 386
+K ++ PTAPDTL P+S+ DPF++ + + +G+ F
Sbjct: 325 ADEKNIINALSTLVKVGHVCPTAPDTLQSVPFSEKDPFVVTDQTDYFCVGDTDRF----- 379
Query: 387 QLEGAVE---VLIVSVPEFSTTGQYLVLDLDSLVPEV 420
L+G E L+ +VP FS + ++LD+++ +V
Sbjct: 380 -LDGQSEDGATLLFTVPRFSRKHEVVILDMEARALDV 415
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.318 0.138 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,125,247
Number of Sequences: 60738
Number of extensions: 1240088
Number of successful extensions: 2728
Number of sequences better than 1.0e-05: 8
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2684
Number of HSP's gapped (non-prelim): 10
length of query: 425
length of database: 30,389,216
effective HSP length: 109
effective length of query: 316
effective length of database: 23,768,774
effective search space: 7510932584
effective search space used: 7510932584
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)