ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactVI4032.1   good         C     KOG3494   Energy production and conversion                               Ubiquinol cytochrome c oxidoreductase, subunit QCR9

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactVI4032.1 1409433 1409290 -48  
         (48 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YGR183c [C] KOG3494 Ubiquinol cytochrome c oxidoreductase subuni...    67   4e-12
7303402 [C] KOG3494 Ubiquinol cytochrome c oxidoreductase subuni...    42   2e-04
SPCC1682.01 [C] KOG3494 Ubiquinol cytochrome c oxidoreductase su...    28   3.1  

>YGR183c [C] KOG3494 Ubiquinol cytochrome c oxidoreductase subunit QCR9
          Length = 66

 Score = 67.4 bits (163), Expect = 4e-12
 Identities = 28/39 (71%), Positives = 31/39 (78%)

Query: 1  MFASAFVFQAAFDTGVTSWYENHNKGKLWKDIKGGIMNG 39
          +FA AFVFQ  FDT +TSWYENHNKGKLWKD+K  I  G
Sbjct: 21 IFAGAFVFQTVFDTAITSWYENHNKGKLWKDVKARIAAG 59


>7303402 [C] KOG3494 Ubiquinol cytochrome c oxidoreductase subunit QCR9
          Length = 55

 Score = 42.0 bits (97), Expect = 2e-04
 Identities = 19/34 (55%), Positives = 23/34 (66%)

Query: 1  MFASAFVFQAAFDTGVTSWYENHNKGKLWKDIKG 34
          + ASAF F+ A D    + +E  NKGKLWKDIKG
Sbjct: 19 IIASAFFFERALDVTSVAIFEGINKGKLWKDIKG 52


>SPCC1682.01 [C] KOG3494 Ubiquinol cytochrome c oxidoreductase subunit QCR9
          Length = 85

 Score = 27.7 bits (60), Expect = 3.1
 Identities = 12/38 (31%), Positives = 19/38 (49%)

Query: 1  MFASAFVFQAAFDTGVTSWYENHNKGKLWKDIKGGIMN 38
          +F SAF  +  FD    S ++  N G  W ++K   +N
Sbjct: 39 IFVSAFFAKIGFDVFTDSVWKRANAGLTWDEVKPRFLN 76


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.321    0.137    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,664,280
Number of Sequences: 60738
Number of extensions: 59772
Number of successful extensions: 150
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 147
Number of HSP's gapped (non-prelim): 3
length of query: 48
length of database: 30,389,216
effective HSP length: 24
effective length of query: 24
effective length of database: 28,931,504
effective search space: 694356096
effective search space used: 694356096
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)