ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI4114 good J KOG2917 Translation, ribosomal structure and biogenesis Predicted exosome subunit
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI4114 1436045 1436785 247
(247 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YLR022c [J] KOG2917 Predicted exosome subunit 346 2e-95
SPAC4F8.03 [J] KOG2917 Predicted exosome subunit 210 1e-54
Hs14746057 [J] KOG2917 Predicted exosome subunit 196 2e-50
7295325 [J] KOG2917 Predicted exosome subunit 190 1e-48
Hs7705811 [J] KOG2917 Predicted exosome subunit 186 3e-47
At1g43860_1 [J] KOG2917 Predicted exosome subunit 150 1e-36
CE01428 [J] KOG2917 Predicted exosome subunit 136 2e-32
ECU08g1610 [J] KOG2917 Predicted exosome subunit 81 2e-15
Hs14742296 [J] KOG2917 Predicted exosome subunit 55 7e-08
>YLR022c [J] KOG2917 Predicted exosome subunit
Length = 250
Score = 346 bits (887), Expect = 2e-95
Identities = 178/246 (72%), Positives = 215/246 (87%), Gaps = 4/246 (1%)
Query: 4 INQPSGQIKLTNVSMVKLKKAKKRFEVACYQNKVQDYRNGVEKDLDEVLQINQVFINVSK 63
INQPSGQIKLTNVS+V+LKKA+KRFEVACYQNKVQDYR G+EKDLDEVLQI+QVF+NVSK
Sbjct: 3 INQPSGQIKLTNVSLVRLKKARKRFEVACYQNKVQDYRKGIEKDLDEVLQIHQVFMNVSK 62
Query: 64 GQVASKEDLQKAFQTTDVDAIIKEILFKGEIQLSEKERQLQLNKINNEMLTIISAKCINP 123
G VA+KEDLQK F TT+VD +I+EI+ KGEIQLSEKERQL LNK+NNEMLTI+SAKCINP
Sbjct: 63 GLVANKEDLQKCFGTTNVDDVIEEIMHKGEIQLSEKERQLMLNKVNNEMLTIVSAKCINP 122
Query: 124 KSKKRYPPTMIHKALLELKFNVVVNKAAKLQALEAIKLLIAKQIIPIARSKMKIKVAVNL 183
SKKRYPPTMIHKAL ELKF+ V+NK AKLQALEAIKLL++KQIIPI R+KMK+KVA++
Sbjct: 123 VSKKRYPPTMIHKALQELKFSPVINKPAKLQALEAIKLLVSKQIIPIVRAKMKVKVAIS- 181
Query: 184 ETAGSSELIEQLNTLIRS--GQTSQTE-TAWTSIGLIDPVAYRELVNICNQKATLQVLDM 240
E + ELIE+++ LI S G++++ E WT GLIDPV YR+L+ +C++K T+QVLDM
Sbjct: 182 EPSRQPELIEKISKLIASSPGESTKPELDPWTCTGLIDPVNYRDLMTLCDKKGTVQVLDM 241
Query: 241 AVIEES 246
AVI+ +
Sbjct: 242 AVIDNT 247
>SPAC4F8.03 [J] KOG2917 Predicted exosome subunit
Length = 246
Score = 210 bits (535), Expect = 1e-54
Identities = 118/243 (48%), Positives = 166/243 (67%), Gaps = 6/243 (2%)
Query: 3 VINQPSGQIKLTNVSMVKLKKAKKRFEVACYQNKVQDYRNGVEKDLDEVLQINQVFINVS 62
VI+QP GQI+LTNVS+VK KK KRFEVACY+NKV ++RN +E DLDEVLQI+ VF NVS
Sbjct: 2 VISQPVGQIRLTNVSVVKYKKGGKRFEVACYKNKVTEWRNKIETDLDEVLQIHNVFNNVS 61
Query: 63 KGQVASKEDLQKAFQTTDVDAIIKEILFKGEIQLSEKERQLQLNKINNEMLTIISAKCIN 122
KG VAS++DL+KAF T D+D II EIL KG+ Q+ EKER Q++ ++++ ++A C++
Sbjct: 62 KGHVASRQDLKKAFGTDDIDKIILEILQKGDFQVGEKERHHQMSSTYRDIVSHVTAMCMD 121
Query: 123 PKSKKRYPPTMIHKALLELKFNVVVNKAAKLQALEAIKLLIAKQIIPIARSKMKIKVAVN 182
P SK+ YP ++I KAL + F+V +K AK QALEAIK L K IPI R++M+I++ V+
Sbjct: 122 PNSKRPYPASIIEKALSDCGFSVSTSKTAKSQALEAIKKLQEKNEIPIVRARMRIRIVVD 181
Query: 183 LETAGSSELIEQLNTLIRSGQTSQTETAWTSIGLIDPVAYR---ELV-NICNQKATLQVL 238
++ L E+L +L + + + I L+ P Y+ ELV N + +QVL
Sbjct: 182 VKQ--GKALRERLRSLADEIEEENIDDEYECIALVIPGNYKLIDELVRNETKNRGMVQVL 239
Query: 239 DMA 241
DM+
Sbjct: 240 DMS 242
>Hs14746057 [J] KOG2917 Predicted exosome subunit
Length = 250
Score = 196 bits (499), Expect = 2e-50
Identities = 107/245 (43%), Positives = 162/245 (65%), Gaps = 8/245 (3%)
Query: 7 PSGQIKLTNVSMVKLKKAKKRFEVACYQNKVQDYRNGVEKDLDEVLQINQVFINVSKGQV 66
P+ QI+LTNV++V++K+A KRFE+ACY+NKV +R+GVEKDLDEVLQ + VF+NVSKGQV
Sbjct: 6 PTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVSKGQV 65
Query: 67 ASKEDLQKAFQTTDVDAIIKEILFKGEIQLSEKERQLQLNKINNEMLTIISAKCINPKSK 126
A KEDL AF T D I K+IL KGE+Q+S+KER QL ++ ++ TI++ KC+NP++K
Sbjct: 66 AKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVNPETK 125
Query: 127 KRYPPTMIHKALLELKFNVVVNKAAKLQALEAIKLLIAKQIIPIARSKMKIKVAVNLETA 186
+ Y +I +A+ ++ ++V NK+ K QALE IK L K I A +++ + VN
Sbjct: 126 RPYTVILIERAMKDIHYSVKTNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPVN---- 181
Query: 187 GSSELIEQLNTLIRSGQTSQTETAWTSIGLIDPVAYRELVNICNQ----KATLQVLDMAV 242
+L E+L LI+ ++ + LIDP +RE+ + + K +L+VL++
Sbjct: 182 EGKKLKEKLKPLIKVIESEDYGQQLEIVCLIDPGCFREIDELIKKETKGKGSLEVLNLKD 241
Query: 243 IEESN 247
+EE +
Sbjct: 242 VEEGD 246
>7295325 [J] KOG2917 Predicted exosome subunit
Length = 252
Score = 190 bits (483), Expect = 1e-48
Identities = 113/251 (45%), Positives = 164/251 (65%), Gaps = 8/251 (3%)
Query: 1 MAVINQPSGQIKLTNVSMVKLKKAKKRFEVACYQNKVQDYRNGVEKDLDEVLQINQVFIN 60
M+ I P+ QI+LTNV++V+LKK KRFE+ACY+NKV +R+ EKD+DEVLQ + VF N
Sbjct: 1 MSKIFTPTNQIRLTNVAIVRLKKGGKRFEIACYKNKVLSWRSNSEKDIDEVLQTHTVFTN 60
Query: 61 VSKGQVASKEDLQKAFQTTDVDAIIKEILFKGEIQLSEKERQLQLNKINNEMLTIISAKC 120
VSKGQ A K++LQKAF TD I KEIL KGE+Q+SEKERQ L+ N ++ ++A C
Sbjct: 61 VSKGQAAKKDELQKAFNKTDETEICKEILSKGELQVSEKERQSCLDTQLNSIVNSVAALC 120
Query: 121 INPKSKKRYPPTMIHKALLELKFNVVVNKAAKLQALEAIKLLIAKQIIPIARSKMKIKVA 180
+NP++++ YP ++I K+L + F+V +N+ K LEAIK+L K +PI RS+MK++V+
Sbjct: 121 VNPETRRPYPASIIEKSLKDAHFSVKMNRNTKQNTLEAIKIL--KDHMPIERSRMKLRVS 178
Query: 181 VNLETAGSSELIEQLNTLIRSGQTSQTETAWTSIG-LIDPVAYR---ELV-NICNQKATL 235
G +L E + L + + + + A + LIDP YR ELV N K L
Sbjct: 179 F-AGKEGGGKLKESVVKLANAVEHEEWDEATLHLTLLIDPGQYRVIDELVRNETKGKGLL 237
Query: 236 QVLDMAVIEES 246
++L++ + ES
Sbjct: 238 ELLELKEVVES 248
>Hs7705811 [J] KOG2917 Predicted exosome subunit
Length = 250
Score = 186 bits (471), Expect = 3e-47
Identities = 104/245 (42%), Positives = 156/245 (63%), Gaps = 8/245 (3%)
Query: 7 PSGQIKLTNVSMVKLKKAKKRFEVACYQNKVQDYRNGVEKDLDEVLQINQVFINVSKGQV 66
P+ QI+LTNV++V++K+A KRFE+ACY+NKV +R EKDLDEVLQ + VF+NVSKGQV
Sbjct: 6 PTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRRAWEKDLDEVLQTHSVFVNVSKGQV 65
Query: 67 ASKEDLQKAFQTTDVDAIIKEILFKGEIQLSEKERQLQLNKINNEMLTIISAKCINPKSK 126
A KEDL AF T D I K+IL KGE+Q+S+KER QL ++ ++ T ++ KC+NP++K
Sbjct: 66 AKKEDLISAFGTDDQTEICKQILAKGEVQVSDKERHTQLGQMFRDIATFVADKCVNPETK 125
Query: 127 KRYPPTMIHKALLELKFNVVVNKAAKLQALEAIKLLIAKQIIPIARSKMKIKVAVNLETA 186
Y +I +A+ ++ + V NK+ K QALE IK L K I A +++ + VN
Sbjct: 126 GPYTVILIERAMKDIHYLVKPNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPVN---- 181
Query: 187 GSSELIEQLNTLIRSGQTSQTETAWTSIGLIDPVAYRELVNICNQ----KATLQVLDMAV 242
+L E+L LI+ ++ + LIDP +RE+ + + K +L+VL++
Sbjct: 182 EGKKLKEKLKPLIKVIESEDYGQQLEIVCLIDPGCFREIDELIKKETKGKGSLEVLNLKD 241
Query: 243 IEESN 247
+EE +
Sbjct: 242 VEEGD 246
>At1g43860_1 [J] KOG2917 Predicted exosome subunit
Length = 310
Score = 150 bits (380), Expect = 1e-36
Identities = 91/244 (37%), Positives = 155/244 (63%), Gaps = 6/244 (2%)
Query: 6 QPSGQIKLTNVSMVKLKKAKKRFEVACYQNKVQDYRNGVEKDLDEVLQINQVFINVSKGQ 65
QP GQ +LTNV++V+LKK RFE+ACY+NKV +R+GVEKD+DEVLQ + V+ NVSKG
Sbjct: 7 QPVGQKRLTNVAVVRLKKQGNRFEIACYKNKVLSWRSGVEKDIDEVLQSHTVYSNVSKGV 66
Query: 66 VASKEDLQKAFQTTDVDAIIKEILFKGEIQLSEKERQLQLNKINNEMLTIISAKCINPKS 125
+A +DL K+F + D I +IL KGE+Q++ KER+ Q + ++ TI+ K INP++
Sbjct: 67 LAKSKDLMKSFGSDDHTKICIDILEKGELQVAGKERESQFSSQFRDIATIVMQKTINPET 126
Query: 126 KKRYPPTMIHKALLELKFNVVVNKAAKLQALEAIKLLIAKQIIPIARSKMKIKVAVNLET 185
++ Y +M+ + + E+ F V + +K QAL+ I+ L ++ PI RS M++++ V ++
Sbjct: 127 QRPYTISMVERLMHEIHFAVDPHSNSKKQALDVIREL--QKHFPIKRSPMRLRLTVPVQN 184
Query: 186 AGSSELIEQLNTLIRS-GQTSQTETAWTSIGLIDPVAYREL-VNICNQKATLQVLDMAVI 243
S L+E+L S ++ T +++ ++P +RE ++ + + L++L ++V
Sbjct: 185 FPS--LLEKLKEWDGSVVSKDESGTQMSTVCEMEPGLFRECDSHVRSIQGRLEILAVSVH 242
Query: 244 EESN 247
E +
Sbjct: 243 AEGD 246
>CE01428 [J] KOG2917 Predicted exosome subunit
Length = 258
Score = 136 bits (343), Expect = 2e-32
Identities = 90/256 (35%), Positives = 150/256 (58%), Gaps = 22/256 (8%)
Query: 4 INQPSGQIKLTNVSMVKLKKAKKRFEVACYQNKVQDYRNGVEKDLDEVLQINQVFINVSK 63
I P+ Q LTNV++V++KK KRFE+ACY+NKV ++RN EKD+DEVLQ + VF NVSK
Sbjct: 5 IKTPTNQKVLTNVAVVRMKKTGKRFEIACYKNKVVNWRNKSEKDIDEVLQTHTVFSNVSK 64
Query: 64 GQVASKEDLQKAFQTTDVDAI---------IKEILFKGEIQLSEKERQLQLNKINNEMLT 114
GQ++ KE+L AF D I + + G ++E+ L ++
Sbjct: 65 GQLSKKEELIAAFGIEDQLEIYSRQRRLASVGKRASGGFRSIAERGSFFLLKNVSQ---- 120
Query: 115 IISAKCINPKSKKRYPPTMIHKALLELKFNVVVNKAAKLQALEAIKLLIAKQIIPIARSK 174
+I++ +NP++K+ PP++I KAL E+ F++ N+++K QAL+AI L ++ + I R+K
Sbjct: 121 LIASMVVNPETKRPVPPSVIDKALQEMHFSLKPNRSSKQQALDAIPKL--RETLKIERAK 178
Query: 175 MKIKVAVNLETAGSSELIEQLNTLIRSGQTSQ-TETAWTSIGLIDPVAYRELVNICNQK- 232
MKI+VA+ + A S + +L TL + + + +GLI+P ++R L ++ +
Sbjct: 179 MKIRVAIPTKEAKS--VHTKLKTLFSDVEVDDWQDGSLEMVGLIEPGSFRALDDLVRNET 236
Query: 233 ---ATLQVLDMAVIEE 245
L++L + + E
Sbjct: 237 KGHGRLEILSLKDVVE 252
>ECU08g1610 [J] KOG2917 Predicted exosome subunit
Length = 223
Score = 80.9 bits (198), Expect = 2e-15
Identities = 46/113 (40%), Positives = 69/113 (60%), Gaps = 2/113 (1%)
Query: 7 PSGQIKLTNVSMVKLKKAKKRFEVACYQNKVQDYRNGVEKDLDEVLQINQVFINVSKGQV 66
P Q KL NVS+V LKK +R+E+A Y NK+ +YRNG+ L E+LQ + ++ +VSKG++
Sbjct: 4 PLNQKKLVNVSIVTLKKFGRRYELAVYPNKLYEYRNGMRTPLSEILQTDTIYRSVSKGEI 63
Query: 67 ASKEDLQKAFQTTDVDAIIKEILFKGEIQLSEKERQLQLNKINNEMLTIISAK 119
A + DL +T + I++EIL G Q SE R + K E++ I+ K
Sbjct: 64 ARQGDLDLFCRTH--EEIVREILDCGYEQKSEATRVYEQEKTEREIVQILRNK 114
>Hs14742296 [J] KOG2917 Predicted exosome subunit
Length = 152
Score = 55.5 bits (132), Expect = 7e-08
Identities = 37/134 (27%), Positives = 71/134 (52%), Gaps = 8/134 (5%)
Query: 111 EMLTIISAKCINPKSKKRYPPTMIHKALLELKFNVVVNKAAKLQALEAIKLLIAKQIIPI 170
++ I++ KC+ P++K+ Y +I +A+ ++ + V N++ K QALE IK L K I
Sbjct: 4 DIAIIVADKCVTPETKRPYTVILIERAMKDIHYLVKTNRSTKQQALEVIKQLKEKMKIER 63
Query: 171 ARSKMKIKVAVNLETAGSSELIEQLNTLIRSGQTSQTETAWTSIGLIDPVAYRELVNICN 230
A +++ + VN +L E+L LI+ ++ + LID +RE+ +
Sbjct: 64 AHMRLQFILPVN----EGKKLKEKLKPLIKVIESKDYGQQLEIVCLIDLGCFREIDELIK 119
Query: 231 Q----KATLQVLDM 240
+ K +L+VL++
Sbjct: 120 KETKGKGSLEVLNL 133
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.315 0.130 0.341
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,052,396
Number of Sequences: 60738
Number of extensions: 438260
Number of successful extensions: 1577
Number of sequences better than 1.0e-05: 9
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1565
Number of HSP's gapped (non-prelim): 9
length of query: 247
length of database: 30,389,216
effective HSP length: 104
effective length of query: 143
effective length of database: 24,072,464
effective search space: 3442362352
effective search space used: 3442362352
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)