ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI4134 good K KOG1605 Transcription TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation)
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI4134 1442804 1441563 -414
(414 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YLL010c [K] KOG1605 TFIIF-interacting CTD phosphatase including ... 311 1e-84
YLR019w [K] KOG1605 TFIIF-interacting CTD phosphatase including ... 305 8e-83
SPAC2F7.02c [K] KOG1605 TFIIF-interacting CTD phosphatase includ... 226 5e-59
Hs5031775 [K] KOG1605 TFIIF-interacting CTD phosphatase includin... 196 4e-50
Hs10864009 [K] KOG1605 TFIIF-interacting CTD phosphatase includi... 190 4e-48
Hs19923330 [K] KOG1605 TFIIF-interacting CTD phosphatase includi... 189 9e-48
CE07727 [K] KOG1605 TFIIF-interacting CTD phosphatase including ... 167 3e-41
7294201 [K] KOG1605 TFIIF-interacting CTD phosphatase including ... 164 2e-40
At5g11860 [K] KOG1605 TFIIF-interacting CTD phosphatase includin... 149 6e-36
Hs7705461 [K] KOG1605 TFIIF-interacting CTD phosphatase includin... 139 8e-33
At1g29780 [K] KOG1605 TFIIF-interacting CTD phosphatase includin... 126 7e-29
At5g45700 [K] KOG1605 TFIIF-interacting CTD phosphatase includin... 124 3e-28
Hs7661722 [K] KOG1605 TFIIF-interacting CTD phosphatase includin... 123 6e-28
Hs22064567 [K] KOG1605 TFIIF-interacting CTD phosphatase includi... 123 6e-28
CE22072 [K] KOG1605 TFIIF-interacting CTD phosphatase including ... 123 6e-28
At1g29770 [K] KOG1605 TFIIF-interacting CTD phosphatase includin... 120 5e-27
CE02737 [K] KOG1605 TFIIF-interacting CTD phosphatase including ... 114 3e-25
SPBC3B8.10c [K] KOG1605 TFIIF-interacting CTD phosphatase includ... 111 2e-24
7295520 [K] KOG1605 TFIIF-interacting CTD phosphatase including ... 111 2e-24
ECU10g1270 [K] KOG1605 TFIIF-interacting CTD phosphatase includi... 99 9e-21
YHR004c [K] KOG1605 TFIIF-interacting CTD phosphatase including ... 92 1e-18
7304015 [K] KOG1605 TFIIF-interacting CTD phosphatase including ... 91 3e-18
YPL063w [K] KOG2832 TFIIF-interacting CTD phosphatase including ... 89 2e-17
7291953 [K] KOG2832 TFIIF-interacting CTD phosphatase including ... 82 1e-15
7292341 [K] KOG1605 TFIIF-interacting CTD phosphatase including ... 79 1e-14
Hs22055643 [K] KOG1605 TFIIF-interacting CTD phosphatase includi... 79 2e-14
7302145 [K] KOG2832 TFIIF-interacting CTD phosphatase including ... 79 2e-14
At3g55960 [K] KOG1605 TFIIF-interacting CTD phosphatase includin... 74 3e-13
Hs22060597_2 [K] KOG1605 TFIIF-interacting CTD phosphatase inclu... 74 3e-13
Hs20560426_2 [K] KOG1605 TFIIF-interacting CTD phosphatase inclu... 74 3e-13
Hs17483190 [K] KOG2832 TFIIF-interacting CTD phosphatase includi... 70 4e-12
Hs17461521 [K] KOG1605 TFIIF-interacting CTD phosphatase includi... 69 1e-11
At1g55900 [K] KOG2832 TFIIF-interacting CTD phosphatase includin... 64 4e-10
CE06481 [K] KOG2832 TFIIF-interacting CTD phosphatase including ... 62 2e-09
At4g18140 [K] KOG1605 TFIIF-interacting CTD phosphatase includin... 61 3e-09
7290361 [K] KOG2832 TFIIF-interacting CTD phosphatase including ... 61 3e-09
At5g46410 [K] KOG1605 TFIIF-interacting CTD phosphatase includin... 59 1e-08
At3g15330 [K] KOG0323 TFIIF-interacting CTD phosphatases includi... 54 6e-07
ECU07g0890 [K] KOG0323 TFIIF-interacting CTD phosphatases includ... 51 3e-06
>YLL010c [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 427
Score = 311 bits (796), Expect = 1e-84
Identities = 154/207 (74%), Positives = 171/207 (82%)
Query: 208 EPEDGEPLDLSQLQPDQAHAPGCNTLLLPKADMFKGKKCLVLDLDETLVHSSFKYLRTAD 267
+ ED E +DL+ LQ Q HAPG NTLL P+ + KGKKCL+LDLDETLVHSSFKYLR+AD
Sbjct: 221 DDEDEEYIDLTLLQQGQYHAPGYNTLLPPQDESTKGKKCLILDLDETLVHSSFKYLRSAD 280
Query: 268 FVIPVEIDNQVHNVYVIKRPGVDEFLRRITELYEVVVFTASVSRYGDPLLDILDKDKTIH 327
FV+ VEID+QVHNVYVIKRPGV+EFL R+ +L+EVVVFTASVSRYGDPLLDILD DK IH
Sbjct: 281 FVLSVEIDDQVHNVYVIKRPGVEEFLERVGKLFEVVVFTASVSRYGDPLLDILDTDKVIH 340
Query: 328 HRLFRDSCYNYEGNYIKNLSQIGRPLSDMIILDNSPASYIFHPQHAIPISSWFSDAHDNX 387
HRLFR++CYNYEGNYIKNLSQIGRPLSD+IILDNSPASYIFHPQHAIPISSWFSD HDN
Sbjct: 341 HRLFREACYNYEGNYIKNLSQIGRPLSDIIILDNSPASYIFHPQHAIPISSWFSDTHDNE 400
Query: 388 XXXXXXXXXXXXXXRVPDVGEILDVTI 414
DVG+ILDVTI
Sbjct: 401 LLDIIPLLEDLSVKTSLDVGKILDVTI 427
>YLR019w [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 397
Score = 305 bits (781), Expect = 8e-83
Identities = 147/199 (73%), Positives = 165/199 (82%)
Query: 216 DLSQLQPDQAHAPGCNTLLLPKADMFKGKKCLVLDLDETLVHSSFKYLRTADFVIPVEID 275
DL+ LQPDQ HAPG +TLL PK F+ KKCL+LDLDETLVHSSFKY+ +ADFV+PVEID
Sbjct: 199 DLTHLQPDQYHAPGYDTLLPPKLQEFQQKKCLILDLDETLVHSSFKYMHSADFVLPVEID 258
Query: 276 NQVHNVYVIKRPGVDEFLRRITELYEVVVFTASVSRYGDPLLDILDKDKTIHHRLFRDSC 335
+QVHNVYVIKRPGVDEFL R+++LYEVVVFTASVSRY +PLLD LD + TIHHRLFR++C
Sbjct: 259 DQVHNVYVIKRPGVDEFLNRVSQLYEVVVFTASVSRYANPLLDTLDPNGTIHHRLFREAC 318
Query: 336 YNYEGNYIKNLSQIGRPLSDMIILDNSPASYIFHPQHAIPISSWFSDAHDNXXXXXXXXX 395
YNYEGNYIKNLSQIGRPLS+ IILDNSPASYIFHPQHA+PISSWFSD HDN
Sbjct: 319 YNYEGNYIKNLSQIGRPLSETIILDNSPASYIFHPQHAVPISSWFSDTHDNELLDIIPLL 378
Query: 396 XXXXXXRVPDVGEILDVTI 414
V DVG +LDVTI
Sbjct: 379 EDLSSGNVLDVGSVLDVTI 397
>SPAC2F7.02c [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 325
Score = 226 bits (576), Expect = 5e-59
Identities = 110/203 (54%), Positives = 146/203 (71%), Gaps = 3/203 (1%)
Query: 213 EPLDLSQLQ-PDQAHAPGCNTLLLPKADMFKGKKCLVLDLDETLVHSSFKYLRTADFVIP 271
EP+D + P+ N LL P A +GKKCL+LDLDETLVHSSFKY+ ADFV+
Sbjct: 125 EPIDFADPPLPEVKRYGEGNWLLPPIAKEDEGKKCLILDLDETLVHSSFKYIEPADFVVS 184
Query: 272 VEIDNQVHNVYVIKRPGVDEFLRRITELYEVVVFTASVSRYGDPLLDILDKDKTIHHRLF 331
+EID H+V V+KRPGVDEFL+++ +++E+VVFTAS+++Y DP+LD+LD I HRLF
Sbjct: 185 IEIDGLQHDVRVVKRPGVDEFLKKMGDMFEIVVFTASLAKYADPVLDMLDHSHVIRHRLF 244
Query: 332 RDSCYNYEGNYIKNLSQIGRPLSDMIILDNSPASYIFHPQHAIPISSWFSDAHDNXXXXX 391
R++C NYEGN++K+LSQ+GR L D II+DNSP+SYIFHP HA+PISSWF+D HD
Sbjct: 245 REACCNYEGNFVKDLSQLGRNLEDSIIIDNSPSSYIFHPSHAVPISSWFNDMHD--MELI 302
Query: 392 XXXXXXXXXXRVPDVGEILDVTI 414
RVPDV +L++ +
Sbjct: 303 DLIPFLEHLARVPDVSTVLNLQL 325
>Hs5031775 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 340
Score = 196 bits (499), Expect = 4e-50
Identities = 90/153 (58%), Positives = 122/153 (78%), Gaps = 1/153 (0%)
Query: 234 LLPKADMFK-GKKCLVLDLDETLVHSSFKYLRTADFVIPVEIDNQVHNVYVIKRPGVDEF 292
LLP+ + GKKC+V+DLDETLVHSSFK + ADF++PVEID +H VYV+KRP VDEF
Sbjct: 159 LLPEVTVLDYGKKCVVIDLDETLVHSSFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEF 218
Query: 293 LRRITELYEVVVFTASVSRYGDPLLDILDKDKTIHHRLFRDSCYNYEGNYIKNLSQIGRP 352
L+R+ +L+E V+FTAS+++Y DP+ D+LD+ RLFR+SC + GNY+K+LS++GR
Sbjct: 219 LQRMGQLFECVLFTASLAKYADPVADLLDRWGVFRARLFRESCVFHRGNYVKDLSRLGRE 278
Query: 353 LSDMIILDNSPASYIFHPQHAIPISSWFSDAHD 385
LS +II+DNSPASYIFHP++A+P+ SWF D D
Sbjct: 279 LSKVIIVDNSPASYIFHPENAVPVQSWFDDMTD 311
>Hs10864009 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 261
Score = 190 bits (482), Expect = 4e-48
Identities = 90/153 (58%), Positives = 119/153 (76%), Gaps = 1/153 (0%)
Query: 234 LLPKADMFKGKK-CLVLDLDETLVHSSFKYLRTADFVIPVEIDNQVHNVYVIKRPGVDEF 292
LLP+A K C+V+DLDETLVHSSFK + ADF+IPVEID VH VYV+KRP VDEF
Sbjct: 79 LLPEAKAQDSDKICVVIDLDETLVHSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEF 138
Query: 293 LRRITELYEVVVFTASVSRYGDPLLDILDKDKTIHHRLFRDSCYNYEGNYIKNLSQIGRP 352
L+R+ EL+E V+FTAS+++Y DP+ D+LDK RLFR+SC + GNY+K+LS++GR
Sbjct: 139 LQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCVFHRGNYVKDLSRLGRD 198
Query: 353 LSDMIILDNSPASYIFHPQHAIPISSWFSDAHD 385
L ++ILDNSPASY+FHP +A+P++SWF + D
Sbjct: 199 LRRVLILDNSPASYVFHPDNAVPVASWFDNMSD 231
>Hs19923330 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 283
Score = 189 bits (479), Expect = 9e-48
Identities = 92/170 (54%), Positives = 125/170 (73%), Gaps = 3/170 (1%)
Query: 217 LSQLQPDQAHAPGCNTLLLPKA-DMFKGKKCLVLDLDETLVHSSFKYLRTADFVIPVEID 275
L LQ PG T LLP+ + +G+ C+V+DLDETLVHSSFK + ADF++P+EI+
Sbjct: 75 LQCLQYQFYQIPG--TCLLPEVTEEDQGRICVVIDLDETLVHSSFKPINNADFIVPIEIE 132
Query: 276 NQVHNVYVIKRPGVDEFLRRITELYEVVVFTASVSRYGDPLLDILDKDKTIHHRLFRDSC 335
H VYV+KRP VDEFLRR+ EL+E V+FTAS+++Y DP+ D+LD+ RLFR+SC
Sbjct: 133 GTTHQVYVLKRPYVDEFLRRMGELFECVLFTASLAKYADPVTDLLDRCGVFRARLFRESC 192
Query: 336 YNYEGNYIKNLSQIGRPLSDMIILDNSPASYIFHPQHAIPISSWFSDAHD 385
++G Y+K+LS++GR L +ILDNSPASYIFHP++A+P+ SWF D D
Sbjct: 193 VFHQGCYVKDLSRLGRDLRKTLILDNSPASYIFHPENAVPVQSWFDDMAD 242
>CE07727 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 288
Score = 167 bits (423), Expect = 3e-41
Identities = 85/191 (44%), Positives = 116/191 (60%), Gaps = 38/191 (19%)
Query: 233 LLLPKADMFKGKKCLVLDLDETLVHSSFKYLRTADFVIPVEIDNQVHNVYVIKRPGVDEF 292
LL P KKCLV+DLDETLVHSSFK ++ DFVIPVEID H VYV+KRP VDEF
Sbjct: 59 LLPPLLPQDSNKKCLVIDLDETLVHSSFKPVKNPDFVIPVEIDGVEHQVYVLKRPYVDEF 118
Query: 293 LRRITELYEVVVFTASVSRYGDPLLDILDKDKTIHHRLFRDSCYNYEGNYIKN------- 345
L ++ E +E ++FTAS+++Y DP+ D+LDK + RLFR++C ++GNY K+
Sbjct: 119 LAKVGEHFECILFTASLAKYADPVADLLDKKRVFRGRLFREACVFHKGNYRKSNISDSFI 178
Query: 346 -------------------------------LSQIGRPLSDMIILDNSPASYIFHPQHAI 374
LS++GR L+ +I+DNSPASY FHP++A+
Sbjct: 179 FFSEIFGEIDYRKMKNLHFSSYFPEKIEKYYLSRLGRNLNQTLIIDNSPASYAFHPENAV 238
Query: 375 PISSWFSDAHD 385
P+++WF D D
Sbjct: 239 PVTTWFDDPSD 249
>7294201 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 302
Score = 164 bits (415), Expect = 2e-40
Identities = 73/125 (58%), Positives = 97/125 (77%)
Query: 261 KYLRTADFVIPVEIDNQVHNVYVIKRPGVDEFLRRITELYEVVVFTASVSRYGDPLLDIL 320
K + ADF++PVEID VH VYV+KRP VDEFL+++ ELYE V+FTAS+++Y DP+ D+L
Sbjct: 79 KPIPNADFIVPVEIDGTVHQVYVLKRPHVDEFLQKMGELYECVLFTASLAKYADPVADLL 138
Query: 321 DKDKTIHHRLFRDSCYNYEGNYIKNLSQIGRPLSDMIILDNSPASYIFHPQHAIPISSWF 380
DK RLFR+SC Y GNYIK+L+++GR L ++I+DNSPASYIFHP +A+P+ SWF
Sbjct: 139 DKWNVFRARLFRESCVYYRGNYIKDLNRLGRDLQKIVIVDNSPASYIFHPDNAVPVKSWF 198
Query: 381 SDAHD 385
D D
Sbjct: 199 DDVTD 203
>At5g11860 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 305
Score = 149 bits (377), Expect = 6e-36
Identities = 80/186 (43%), Positives = 114/186 (61%), Gaps = 8/186 (4%)
Query: 208 EPEDGEPLD-------LSQLQPDQAHAPGCNTLLLPKADMFKGKKCLVLDLDETLVHSSF 260
E E+ E LD + L + P +LLPK LVLDLDETLVHS+
Sbjct: 68 EDEEDEELDEFDPYLFIKNLPNLSSVVPTFRPVLLPKQTRSCPPISLVLDLDETLVHSTL 127
Query: 261 KYLRTADFVIPVEIDNQVHNVYVIKRPGVDEFLRRITELYEVVVFTASVSRYGDPLLDIL 320
+ DF PV + + H VYV RP + EF+ R++ L+E+++FTAS S Y + LL++L
Sbjct: 128 EPCGEVDFTFPVNFNEEEHMVYVRCRPHLKEFMERVSRLFEIIIFTASQSIYAEQLLNVL 187
Query: 321 D-KDKTIHHRLFRDSCYNYEGNYIKNLSQIGRPLSDMIILDNSPASYIFHPQHAIPISSW 379
D K K HR++RDSC ++GNY+K+LS +GR LS +II+DNSP ++ F ++ +PI SW
Sbjct: 188 DPKRKLFRHRVYRDSCVFFDGNYLKDLSVLGRDLSRVIIVDNSPQAFGFQVENGVPIESW 247
Query: 380 FSDAHD 385
F+D D
Sbjct: 248 FNDPSD 253
>Hs7705461 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 466
Score = 139 bits (350), Expect = 8e-33
Identities = 70/141 (49%), Positives = 94/141 (66%), Gaps = 1/141 (0%)
Query: 247 LVLDLDETLVHSSFKYLRTADFVIPVEIDNQVHNVYVIKRPGVDEFLRRITELYEVVVFT 306
LVLDLDETLVH S L A PV + ++ VYV RP EFL R++++YE+++FT
Sbjct: 290 LVLDLDETLVHCSLNELEDAALTFPVLFQDVIYQVYVRLRPFFREFLERMSQMYEIILFT 349
Query: 307 ASVSRYGDPLLDILD-KDKTIHHRLFRDSCYNYEGNYIKNLSQIGRPLSDMIILDNSPAS 365
AS Y D LL+ILD K + + HRLFR+ C +GNYIK+L+ +GR LS II+DNSP +
Sbjct: 350 ASKKVYADKLLNILDPKKQLVRHRLFREHCVCVQGNYIKDLNILGRDLSKTIIIDNSPQA 409
Query: 366 YIFHPQHAIPISSWFSDAHDN 386
+ + + IPI SWF D +DN
Sbjct: 410 FAYQLSNGIPIESWFMDKNDN 430
>At1g29780 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 221
Score = 126 bits (316), Expect = 7e-29
Identities = 61/144 (42%), Positives = 96/144 (66%), Gaps = 2/144 (1%)
Query: 244 KKCLVLDLDETLVHSSFKYLRTA-DFVIPVEIDNQVHNVYVIKRPGVDEFLRRITELYEV 302
K+ ++LDLDETLVH++ DF++ V+++ ++ ++V+KRPGV EFL R+ E Y+V
Sbjct: 49 KRTIILDLDETLVHATTHLPGVKHDFMVMVKMEREIMPIFVVKRPGVTEFLERLGENYKV 108
Query: 303 VVFTASVSRYGDPLLDILDKDKTIHHRLFRDSCYNYEGNYIKNLS-QIGRPLSDMIILDN 361
VVFTA + Y +LD LDK+ I RL+RDSC G Y+K+LS +G+ L +I+D+
Sbjct: 109 VVFTAGLEEYASQVLDKLDKNGVISQRLYRDSCTEVNGKYVKDLSLVVGKDLRSALIVDD 168
Query: 362 SPASYIFHPQHAIPISSWFSDAHD 385
+P+SY P++ +PI ++ D D
Sbjct: 169 NPSSYSLQPENGVPIKAFVDDLKD 192
>At5g45700 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 272
Score = 124 bits (311), Expect = 3e-28
Identities = 65/144 (45%), Positives = 93/144 (64%), Gaps = 2/144 (1%)
Query: 244 KKCLVLDLDETLVHSSFKYLRTA-DFVIPVEIDNQVHNVYVIKRPGVDEFLRRITELYEV 302
KK +VLDLDETLVHSS + DFV+ +ID Q+ +VIKRPGVDEFL++I E Y++
Sbjct: 97 KKTIVLDLDETLVHSSMEKPEVPYDFVVNPKIDGQILTFFVIKRPGVDEFLKKIGEKYQI 156
Query: 303 VVFTASVSRYGDPLLDILDKDKTIHHRLF-RDSCYNYEGNYIKNLSQIGRPLSDMIILDN 361
VVFTA + Y +LD LD ++ + R F RD+C +G +K+L + R L ++I+D+
Sbjct: 157 VVFTAGLREYASLVLDKLDPERRVISRSFYRDACSEIDGRLVKDLGFVMRDLRRVVIVDD 216
Query: 362 SPASYIFHPQHAIPISSWFSDAHD 385
+P SY P++A PI + D D
Sbjct: 217 NPNSYALQPENAFPIKPFSDDLED 240
>Hs7661722 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 244
Score = 123 bits (308), Expect = 6e-28
Identities = 71/151 (47%), Positives = 92/151 (60%), Gaps = 9/151 (5%)
Query: 244 KKCLVLDLDETLVHSSFK-YLRTA-------DFVIPVEIDNQVHNVYVIKRPGVDEFLRR 295
+K LVLDLDETL+HS LR DF++ V ID +V KRP VD FL
Sbjct: 61 RKILVLDLDETLIHSHHDGVLRPTVRPGTPPDFILKVVIDKHPVRFFVHKRPHVDFFLEV 120
Query: 296 ITELYEVVVFTASVSRYGDPLLDILDKDKTI-HHRLFRDSCYNYEGNYIKNLSQIGRPLS 354
+++ YE+VVFTAS+ YG + D LD ++I R +R C G+YIK+LS + LS
Sbjct: 121 VSQWYELVVFTASMEIYGSAVADKLDNSRSILKRRYYRQHCTLELGSYIKDLSVVHSDLS 180
Query: 355 DMIILDNSPASYIFHPQHAIPISSWFSDAHD 385
++ILDNSP +Y HP +AIPI SWFSD D
Sbjct: 181 SIVILDNSPGAYRSHPDNAIPIKSWFSDPSD 211
>Hs22064567 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 244
Score = 123 bits (308), Expect = 6e-28
Identities = 71/151 (47%), Positives = 92/151 (60%), Gaps = 9/151 (5%)
Query: 244 KKCLVLDLDETLVHSSFK-YLRTA-------DFVIPVEIDNQVHNVYVIKRPGVDEFLRR 295
+K LVLDLDETL+HS LR DF++ V ID +V KRP VD FL
Sbjct: 61 RKILVLDLDETLIHSHHDGVLRPTVRPGTPPDFILKVVIDKHPVRFFVHKRPHVDFFLEV 120
Query: 296 ITELYEVVVFTASVSRYGDPLLDILDKDKTI-HHRLFRDSCYNYEGNYIKNLSQIGRPLS 354
+++ YE+VVFTAS+ YG + D LD ++I R +R C G+YIK+LS + LS
Sbjct: 121 VSQWYELVVFTASMEIYGSAVADKLDNSRSILKRRYYRQHCTLELGSYIKDLSVVHSDLS 180
Query: 355 DMIILDNSPASYIFHPQHAIPISSWFSDAHD 385
++ILDNSP +Y HP +AIPI SWFSD D
Sbjct: 181 SIVILDNSPGAYRSHPDNAIPIKSWFSDPSD 211
>CE22072 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 287
Score = 123 bits (308), Expect = 6e-28
Identities = 66/140 (47%), Positives = 86/140 (61%), Gaps = 1/140 (0%)
Query: 247 LVLDLDETLVHSSFKYLRTADFVIPVEIDNQVHNVYVIKRPGVDEFLRRITELYEVVVFT 306
LVLDLDETLVH S L A V PV N + VYV RP + FL R+ + +E+++FT
Sbjct: 67 LVLDLDETLVHCSLTPLDNATMVFPVVFQNITYQVYVRLRPHLRTFLSRMAKTFEIIIFT 126
Query: 307 ASVSRYGDPLLDILDKDKT-IHHRLFRDSCYNYEGNYIKNLSQIGRPLSDMIILDNSPAS 365
AS Y + L DILD K I HRLFR+ C GNY+K+L+ +GR S +ILDN+ S
Sbjct: 127 ASKKVYANKLCDILDPRKNHIRHRLFREHCVCVFGNYVKDLTILGRDPSKTMILDNAVQS 186
Query: 366 YIFHPQHAIPISSWFSDAHD 385
+ + + IPI SWF D +D
Sbjct: 187 FAYQLDNGIPIESWFHDRND 206
>At1g29770 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 278
Score = 120 bits (300), Expect = 5e-27
Identities = 59/145 (40%), Positives = 91/145 (62%), Gaps = 3/145 (2%)
Query: 244 KKCLVLDLDETLVHSSFK--YLRTADFVIPVEIDNQVHNVYVIKRPGVDEFLRRITELYE 301
K+ + LDLDETLVHS+ + DF++ ++I+ V ++V+KRPGV EFL RI++ Y
Sbjct: 102 KRTIFLDLDETLVHSTMEPPIRVNVDFMVRIKIEGAVIPMFVVKRPGVTEFLERISKNYR 161
Query: 302 VVVFTASVSRYGDPLLDILDKDKTIHHRLFRDSCYNYEGNYIKNLSQIGR-PLSDMIILD 360
V +FTA + Y +LD LDK++ I RL+RDSC G Y K+LS + + L ++++D
Sbjct: 162 VAIFTAGLPEYASQVLDKLDKNRVISQRLYRDSCTEVNGRYAKDLSLVAKNDLGSVLLVD 221
Query: 361 NSPASYIFHPQHAIPISSWFSDAHD 385
++P SY P + +PI + D D
Sbjct: 222 DNPFSYSLQPDNGVPIKPFMDDMED 246
>CE02737 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 246
Score = 114 bits (285), Expect = 3e-25
Identities = 70/151 (46%), Positives = 88/151 (57%), Gaps = 9/151 (5%)
Query: 244 KKCLVLDLDETLVHS--------SFKYLRTADFVIPVEIDNQVHNVYVIKRPGVDEFLRR 295
+K LVLDLDETL+HS + K +DF I V ID V +RP VD FL
Sbjct: 57 RKILVLDLDETLIHSHHDGVLRQTVKPGTPSDFTIRVVIDRHPVKFSVHERPHVDYFLSV 116
Query: 296 ITELYEVVVFTASVSRYGDPLLDILDKDKTI-HHRLFRDSCYNYEGNYIKNLSQIGRPLS 354
+++ YE+VVFTAS+ YG + D LD+ + I R FR C G Y K+LS I LS
Sbjct: 117 VSQWYELVVFTASMEVYGTSVADRLDRGRGILKRRYFRQHCTMEVGGYTKDLSAIHPDLS 176
Query: 355 DMIILDNSPASYIFHPQHAIPISSWFSDAHD 385
+ ILDNSP +Y P +AIPI SWFSD +D
Sbjct: 177 SICILDNSPGAYRKFPHNAIPIPSWFSDPND 207
>SPBC3B8.10c [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 476
Score = 111 bits (278), Expect = 2e-24
Identities = 60/146 (41%), Positives = 91/146 (62%), Gaps = 5/146 (3%)
Query: 244 KKCLVLDLDETLVHSSFKYLRTADFVIPVEIDNQVHN---VYVIKRPGVDEFLRRITELY 300
+K LVLDLDETL+HS + RT P+E+ + Y+ KRP +D FL +++ +
Sbjct: 303 RKTLVLDLDETLIHSVSRGSRTTSGQ-PIEVHVPGEHPILYYIHKRPHLDYFLSNVSQWF 361
Query: 301 EVVVFTASVSRYGDPLLDILDKDKTIH-HRLFRDSCYNYEGNYIKNLSQIGRPLSDMIIL 359
+++FTASV Y DP++D L++DK I R +R C + +++K++S LS ++I+
Sbjct: 362 RLILFTASVQPYADPIIDYLERDKKIFAKRYYRQHCALVDSSFVKDISICNIHLSRIMII 421
Query: 360 DNSPASYIFHPQHAIPISSWFSDAHD 385
DNSPASY H ++AIPI W SD D
Sbjct: 422 DNSPASYNAHKENAIPIEGWISDPSD 447
>7295520 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 243
Score = 111 bits (278), Expect = 2e-24
Identities = 65/151 (43%), Positives = 86/151 (56%), Gaps = 9/151 (5%)
Query: 244 KKCLVLDLDETLVHSSFKYL--------RTADFVIPVEIDNQVHNVYVIKRPGVDEFLRR 295
+K LVLDLDETL+HS + DF + V ID +V KRP VD FL
Sbjct: 60 RKTLVLDLDETLIHSHHNAMPRNTVKPGTPHDFTVKVTIDRNPVRFFVHKRPHVDYFLDV 119
Query: 296 ITELYEVVVFTASVSRYGDPLLDILDKDKTI-HHRLFRDSCYNYEGNYIKNLSQIGRPLS 354
+++ Y++VVFTAS+ YG + D LD + I R +R C G+Y K+LS I L+
Sbjct: 120 VSQWYDLVVFTASMEIYGAAVADKLDNGRNILRRRYYRQHCTPDYGSYTKDLSAICSDLN 179
Query: 355 DMIILDNSPASYIFHPQHAIPISSWFSDAHD 385
+ I+DNSP +Y P +AIPI SWFSD D
Sbjct: 180 RIFIIDNSPGAYRCFPNNAIPIKSWFSDPMD 210
>ECU10g1270 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 226
Score = 99.4 bits (246), Expect = 9e-21
Identities = 52/143 (36%), Positives = 83/143 (57%), Gaps = 1/143 (0%)
Query: 244 KKCLVLDLDETLVHSSFKYLRTADFVIPVEIDNQVHNVYVIKRPGVDEFLRRITELYEVV 303
K LVLDLD TLV+S+F+ + DF + + + +YV RP EF+ LYEVV
Sbjct: 48 KPTLVLDLDNTLVYSTFRMPKLYDFCVEIPRSRNIL-IYVKARPYAAEFISAAEALYEVV 106
Query: 304 VFTASVSRYGDPLLDILDKDKTIHHRLFRDSCYNYEGNYIKNLSQIGRPLSDMIILDNSP 363
+FT++ Y ++D +D +K I L+R+SC G Y+K+L ++GR L +I++D++P
Sbjct: 107 IFTSAKREYAKKVVDRIDTNKNISRILYRESCTFTNGRYVKDLRKVGRSLDRVILIDDNP 166
Query: 364 ASYIFHPQHAIPISSWFSDAHDN 386
SY P++ I I + D+
Sbjct: 167 YSYELQPRNGIHIPPYTGAEDDD 189
>YHR004c [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 446
Score = 92.0 bits (227), Expect = 1e-18
Identities = 59/172 (34%), Positives = 97/172 (56%), Gaps = 20/172 (11%)
Query: 234 LLPKADM-FKGKKCLVLDLDETLVHSSFKYLRTAD----FVIPVEID-NQVHNVYVI-KR 286
L+PK+ + + KK LV+DLDETL+HS+ + ++ ++ V+ + + +Y I KR
Sbjct: 240 LIPKSVLNTQKKKKLVIDLDETLIHSASRSTTHSNSSQGHLVEVKFGLSGIRTLYFIHKR 299
Query: 287 PGVDEFLRRITELYEVVVFTASVSRYGDPLLDILDKD--KTIHHRLFRDSCYNYEG-NYI 343
P D FL ++++ Y++++FTAS+ Y DP++D L+ + R +R C +G YI
Sbjct: 300 PYCDLFLTKVSKWYDLIIFTASMKEYADPVIDWLESSFPSSFSKRYYRSDCVLRDGVGYI 359
Query: 344 KNLSQI----------GRPLSDMIILDNSPASYIFHPQHAIPISSWFSDAHD 385
K+LS + L D+II+DNSP SY + +AI + W SD D
Sbjct: 360 KDLSIVKDSEENGKGSSSSLDDVIIIDNSPVSYAMNVDNAIQVEGWISDPTD 411
>7304015 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 208
Score = 90.9 bits (224), Expect = 3e-18
Identities = 58/159 (36%), Positives = 87/159 (54%), Gaps = 16/159 (10%)
Query: 243 GKKCLVLDLDETLVHSSFKYLRT--------------ADFVIPVEIDNQVHNVY-VIKRP 287
G+K LVLDLDETLVHS + T D+V+ + ID V+ V KRP
Sbjct: 9 GRKTLVLDLDETLVHSCYLDPDTHDNVGCSQLPEHAQPDYVLNISIDGMEPIVFRVFKRP 68
Query: 288 GVDEFLRRITELYEVVVFTASVSRYGDPLLDILDKDK-TIHHRLFRDSCYNYEGNYIKNL 346
VDEFL +++ Y++V++TAS+ Y ++D LD + I R +R C K+L
Sbjct: 69 HVDEFLDFVSKWYDLVIYTASLEVYAAQVVDHLDAGRGLITRRFYRQHCRASSPMVSKDL 128
Query: 347 SQIGRPLSDMIILDNSPASYIFHPQHAIPISSWFSDAHD 385
+ + +S ++I+DNSP +Y P +AIPI ++ D D
Sbjct: 129 TLVTPDMSGVLIIDNSPYAYRDFPDNAIPIKTFIYDPDD 167
>YPL063w [K] KOG2832 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 476
Score = 88.6 bits (218), Expect = 2e-17
Identities = 48/140 (34%), Positives = 78/140 (55%), Gaps = 16/140 (11%)
Query: 247 LVLDLDETLVHSSFKYLRTADFVIPVEIDNQVHNVYVIKRPGVDEFLRRITELYEVVVFT 306
LV+ L++ LVHS + +Q H KRPG D FL +++ YE+V+F+
Sbjct: 194 LVITLEDFLVHSEW---------------SQKHGWRTAKRPGADYFLGYLSQYYEIVLFS 238
Query: 307 ASVSRYGDPLLDILDKDKT-IHHRLFRDSCYNYEGNYIKNLSQIGRPLSDMIILDNSPAS 365
++ Y D + + LD + + LF++ C +G +IK+LS++ R LS +II+D P S
Sbjct: 239 SNYMMYSDKIAEKLDPIHAFVSYNLFKEHCVYKDGVHIKDLSKLNRDLSKVIIIDTDPNS 298
Query: 366 YIFHPQHAIPISSWFSDAHD 385
Y P++AIP+ W +A D
Sbjct: 299 YKLQPENAIPMEPWNGEADD 318
>7291953 [K] KOG2832 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 409
Score = 82.4 bits (202), Expect = 1e-15
Identities = 50/164 (30%), Positives = 77/164 (46%), Gaps = 15/164 (9%)
Query: 247 LVLDLDETLVHSSFKYLRTADFVIPVEIDNQVHNVYVIKRPGVDEFLRRITELYEVVVFT 306
LVL++ + LVH + Y F KRPGVD FL+ + +E+VV+T
Sbjct: 212 LVLEIKDVLVHPDWTYETGWRFK---------------KRPGVDVFLKECAKYFEIVVYT 256
Query: 307 ASVSRYGDPLLDILDKDKTIHHRLFRDSCYNYEGNYIKNLSQIGRPLSDMIILDNSPASY 366
A PL+D LD + I +RL RDS + G+++KNL + R L ++++D S
Sbjct: 257 AEQGVTVFPLVDALDPNGCIMYRLVRDSTHFDGGHHVKNLDNLNRDLKRVVVVDWDRNST 316
Query: 367 IFHPQHAIPISSWFSDAHDNXXXXXXXXXXXXXXXRVPDVGEIL 410
FHP ++ I W + +D + DV E+L
Sbjct: 317 KFHPSNSFSIPRWSGNDNDTTLFELTSFLSVLGTSEIDDVREVL 360
>7292341 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 236
Score = 79.0 bits (193), Expect = 1e-14
Identities = 49/144 (34%), Positives = 80/144 (55%), Gaps = 8/144 (5%)
Query: 244 KKCLVLDLDETLVHSSFKYLRTADFVIP-VEIDNQVH------NVYVIKRPGVDEFLRRI 296
+K LVLD+D T++ S F IP + D + + +YV KRP +D FL R+
Sbjct: 53 RKTLVLDMDNTMITSWFIKRGKKPKNIPRIAHDFKFYLPAYGATIYVYKRPYLDHFLDRV 112
Query: 297 TELYEVVVFTASVSRYGDPLLDILDKDKTI-HHRLFRDSCYNYEGNYIKNLSQIGRPLSD 355
++ Y++ VFT+ Y P+LD LD+ + I + RL+R C G + K++ LS+
Sbjct: 113 SKWYDLTVFTSGAEIYASPILDFLDRGRGILNSRLYRQHCIEQFGKWSKSVLLACPDLSN 172
Query: 356 MIILDNSPASYIFHPQHAIPISSW 379
+++LDNS F+ ++AI I S+
Sbjct: 173 VVLLDNSSTECSFNAENAILIKSY 196
>Hs22055643 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 249
Score = 78.6 bits (192), Expect = 2e-14
Identities = 42/120 (35%), Positives = 66/120 (55%), Gaps = 23/120 (19%)
Query: 266 ADFVIPVEIDNQVHNVYVIKRPGVDEFLRRITELYEVVVFTASVSRYGDPLLDILDKDKT 325
A F +P EI+ + ++ + RR+ EL+E V FTA++++Y +P+ D+L
Sbjct: 104 ASFTVPTEIEETTQAGFCPQKSSRGK--RRMRELFECVPFTANLAKYANPVTDLLA---- 157
Query: 326 IHHRLFRDSCYNYEGNYIKNLSQIGRPLSDMIILDNSPASYIFHPQHAIPISSWFSDAHD 385
++NLS++GR L +ILDN ASYIFHP++A+P+ SWF D D
Sbjct: 158 -----------------VRNLSRLGRNLRKTLILDNLSASYIFHPENAVPVQSWFDDMAD 200
>7302145 [K] KOG2832 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 343
Score = 78.6 bits (192), Expect = 2e-14
Identities = 49/164 (29%), Positives = 77/164 (46%), Gaps = 15/164 (9%)
Query: 247 LVLDLDETLVHSSFKYLRTADFVIPVEIDNQVHNVYVIKRPGVDEFLRRITELYEVVVFT 306
LVL++ + LVH + Y F KRPGVD FL++ + +E+V++T
Sbjct: 142 LVLEIKDVLVHPDWTYQTGWRFK---------------KRPGVDYFLQQCSRNFEIVIYT 186
Query: 307 ASVSRYGDPLLDILDKDKTIHHRLFRDSCYNYEGNYIKNLSQIGRPLSDMIILDNSPASY 366
+ PLLD LD I +RL R + EG + KNL + R LS +I++D P +
Sbjct: 187 SEQGMTAFPLLDALDPYGYIKYRLVRGATDLVEGQHTKNLDYLNRDLSRVIVVDCDPYTT 246
Query: 367 IFHPQHAIPISSWFSDAHDNXXXXXXXXXXXXXXXRVPDVGEIL 410
HP +++ ++ W + D +V DV E+L
Sbjct: 247 PLHPDNSLVLTKWLGNDDDVQLFDLTAFLQLIAEHQVNDVREVL 290
>At3g55960 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 305
Score = 74.3 bits (181), Expect = 3e-13
Identities = 44/149 (29%), Positives = 79/149 (52%), Gaps = 20/149 (13%)
Query: 247 LVLDLDETLV-----------------HSSFKYLRTADFVIPVEIDNQ--VHNVYVIKRP 287
+VLDLDETLV + K+ E D + ++ V V +RP
Sbjct: 100 VVLDLDETLVCAYETSSLPAALRNQAIEAGLKWFELECLSTDKEYDGKPKINYVTVFERP 159
Query: 288 GVDEFLRRITELYEVVVFTASVSRYGDPLLDILDKDKTIHHRLFRDSCYNYE-GNYIKNL 346
G+ EFL +++E ++++FTA + Y PL+D +D K + +RL+R S + + +++K+L
Sbjct: 160 GLHEFLEQLSEFADLILFTAGLEGYARPLVDRIDTRKVLTNRLYRPSTVSTQYRDHVKDL 219
Query: 347 SQIGRPLSDMIILDNSPASYIFHPQHAIP 375
+ + +I+DN+P S++ P + IP
Sbjct: 220 LSTSKNMCRTVIVDNNPFSFLLQPSNGIP 248
>Hs22060597_2 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 103
Score = 74.3 bits (181), Expect = 3e-13
Identities = 41/103 (39%), Positives = 63/103 (60%), Gaps = 12/103 (11%)
Query: 192 EGIHSQGVSDVEMTNGEPEDGEPLDLSQLQPDQAHAPGCNTLLLPKA-DMFKGKKCLVLD 250
+ H +GV+ + M++ L +LQ PG T LLP+ + +G+ C+V D
Sbjct: 11 QSTHKEGVNTIAMSD---------QLQRLQYQFYQIPG--TCLLPEVTEKNQGRICMVTD 59
Query: 251 LDETLVHSSFKYLRTADFVIPVEIDNQVHNVYVIKRPGVDEFL 293
LDETLVHSSFK + AD ++PVE++ +H ++V+ RP +DEFL
Sbjct: 60 LDETLVHSSFKPISNADCLVPVELEGTMHQIHVLMRPYMDEFL 102
>Hs20560426_2 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 103
Score = 74.3 bits (181), Expect = 3e-13
Identities = 41/103 (39%), Positives = 63/103 (60%), Gaps = 12/103 (11%)
Query: 192 EGIHSQGVSDVEMTNGEPEDGEPLDLSQLQPDQAHAPGCNTLLLPKA-DMFKGKKCLVLD 250
+ H +GV+ + M++ L +LQ PG T LLP+ + +G+ C+V D
Sbjct: 11 QSTHKEGVNTIAMSD---------QLQRLQYQFYQIPG--TCLLPEVTEKNQGRICMVTD 59
Query: 251 LDETLVHSSFKYLRTADFVIPVEIDNQVHNVYVIKRPGVDEFL 293
LDETLVHSSFK + AD ++PVE++ +H ++V+ RP +DEFL
Sbjct: 60 LDETLVHSSFKPISNADCLVPVELEGTMHQIHVLMRPYMDEFL 102
>Hs17483190 [K] KOG2832 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 456
Score = 70.5 bits (171), Expect = 4e-12
Identities = 32/127 (25%), Positives = 65/127 (50%)
Query: 285 KRPGVDEFLRRITELYEVVVFTASVSRYGDPLLDILDKDKTIHHRLFRDSCYNYEGNYIK 344
KRPG++ +++ LYE+V+FT+ PL+D +D I +RLFRD+ +G+++K
Sbjct: 276 KRPGIETLFQQLAPLYEIVIFTSETGMTAFPLIDSVDPHGFISYRLFRDATRYMDGHHVK 335
Query: 345 NLSQIGRPLSDMIILDNSPASYIFHPQHAIPISSWFSDAHDNXXXXXXXXXXXXXXXRVP 404
++S + R + ++++D ++ P + + + W ++ D V
Sbjct: 336 DISCLNRDPARVVVVDCKKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFLKTIALNGVE 395
Query: 405 DVGEILD 411
DV +L+
Sbjct: 396 DVRTVLE 402
>Hs17461521 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 222
Score = 68.9 bits (167), Expect = 1e-11
Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 312 YGDPLLDILD-KDKTIHHRLFRDSCYNYEGNYIKNLSQIGRPLSDMIILDNSPASYIFHP 370
Y LL+I+D K + + HR F + C +GN+IKNL+ + R LS +I+DNSP ++ +H
Sbjct: 111 YAGTLLNIVDPKKQLVRHRFFHEHCVCVQGNHIKNLNILARDLSKTVIIDNSPQTFAYHL 170
Query: 371 QHAIPISSWFSDAHDN 386
+ PI S F D +DN
Sbjct: 171 SNGTPIESGFMDKNDN 186
>At1g55900 [K] KOG2832 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 370
Score = 63.9 bits (154), Expect = 4e-10
Identities = 38/139 (27%), Positives = 70/139 (50%), Gaps = 15/139 (10%)
Query: 247 LVLDLDETLVHSSFKYLRTADFVIPVEIDNQVHNVYVIKRPGVDEFLRRITELYEVVVFT 306
LVLDL+ETL+++ +K R KRPGVD FL + + YE+VV++
Sbjct: 193 LVLDLNETLLYTDWKRER---------------GWRTFKRPGVDAFLEHLGKFYEIVVYS 237
Query: 307 ASVSRYGDPLLDILDKDKTIHHRLFRDSCYNYEGNYIKNLSQIGRPLSDMIILDNSPASY 366
+ Y P+ + LD + I ++L R + G + ++LS++ R ++ + +
Sbjct: 238 DQMEMYVLPVCEKLDPNGYIRYKLARGATKYENGKHYRDLSKLNRDPKKILFVSANAFES 297
Query: 367 IFHPQHAIPISSWFSDAHD 385
P++++PI + +A D
Sbjct: 298 TLQPENSVPIKPYKLEADD 316
>CE06481 [K] KOG2832 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 452
Score = 61.6 bits (148), Expect = 2e-09
Identities = 45/168 (26%), Positives = 76/168 (44%), Gaps = 27/168 (16%)
Query: 219 QLQPDQAHAPGCNTLLLPKADMFKGKKCLVLDLDETLVHSSFKYLRTADFVIPVEIDNQV 278
QL PD AP + K +V++L LVH + Y F
Sbjct: 233 QLLPDPLPAP-----------YLQPKYTIVIELKNILVHPEWTYKTGYRF---------- 271
Query: 279 HNVYVIKRPGVDEFLRRIT-ELYEVVVFTASVSRYGDPLLDILDKDKTIHHRLFRDSCYN 337
+KRP +D FL I +EVV++++ P++D D + I ++LFRD
Sbjct: 272 -----LKRPALDYFLDVIGYPNFEVVIYSSESMMTAAPVVDSFDPKQRIMYKLFRDCTKY 326
Query: 338 YEGNYIKNLSQIGRPLSDMIILDNSPASYIFHPQHAIPISSWFSDAHD 385
G+++K+LS++ R LS +I +D S +P++ + + W + D
Sbjct: 327 MNGHHVKDLSKLNRDLSKVIYIDFDAKSGQLNPENMLRVPEWKGNMDD 374
>At4g18140 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 307
Score = 60.8 bits (146), Expect = 3e-09
Identities = 31/72 (43%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 316 LLDILDKD-KTIHHRLFRDSCYNYEGNYIKNLSQIGRPLSDMIILDNSPASYIFHPQHAI 374
LLDILD D K + R +RDSC +G Y K+L+ +G L+ + I+DN P Y + I
Sbjct: 206 LLDILDPDGKFVSQRFYRDSCILSDGIYTKDLTVLGLDLAKVAIVDNCPQVYRLQINNGI 265
Query: 375 PISSWFSDAHDN 386
PI SW+ D D+
Sbjct: 266 PIKSWYDDPTDD 277
>7290361 [K] KOG2832 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 415
Score = 60.8 bits (146), Expect = 3e-09
Identities = 44/164 (26%), Positives = 68/164 (40%), Gaps = 28/164 (17%)
Query: 247 LVLDLDETLVHSSFKYLRTADFVIPVEIDNQVHNVYVIKRPGVDEFLRRITELYEVVVFT 306
LVL++ + LVH + Y F KRPGVD FL + +E+VVFT
Sbjct: 231 LVLEMKDVLVHPDWTYQTGWRFK---------------KRPGVDHFLAECAKDFEIVVFT 275
Query: 307 ASVSRYGDPLLDILDKDKTIHHRLFRDSCYNYEGNYIKNLSQIGRPLSDMIILDNSPASY 366
A P+LD LD + I +RL RD+ + +G+++ I++D +
Sbjct: 276 AEQGMTVFPILDALDPNGYIMYRLVRDATHFVDGHHV-------------IVVDWDANAT 322
Query: 367 IFHPQHAIPISSWFSDAHDNXXXXXXXXXXXXXXXRVPDVGEIL 410
HP + ++ W + D V DV E+L
Sbjct: 323 KMHPDNTFGLARWHGNDDDGQLLDLIAFLKIIAQNNVDDVREVL 366
>At5g46410 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 293
Score = 58.9 bits (141), Expect = 1e-08
Identities = 30/70 (42%), Positives = 41/70 (57%), Gaps = 1/70 (1%)
Query: 318 DILDKD-KTIHHRLFRDSCYNYEGNYIKNLSQIGRPLSDMIILDNSPASYIFHPQHAIPI 376
DILD D K I R +RDSC +G Y K+L+ +G L+ + I+DN P Y + IPI
Sbjct: 194 DILDPDGKFISQRFYRDSCILLDGIYTKDLTVLGLDLAKVAIIDNCPQVYRLQINNGIPI 253
Query: 377 SSWFSDAHDN 386
SW+ D D+
Sbjct: 254 KSWYDDPTDD 263
>At3g15330 [K] KOG0323 TFIIF-interacting CTD phosphatases including
NLI-interacting factor
Length = 305
Score = 53.5 bits (127), Expect = 6e-07
Identities = 42/148 (28%), Positives = 75/148 (50%), Gaps = 13/148 (8%)
Query: 247 LVLDLDETLVHS--SFKYLRTADFVIPVEI-----DNQVHNVYVIK-RPGVDEFLRRITE 298
LVLDLD TL+HS + + ++I E D + +N ++K RP V+EFL+ +
Sbjct: 79 LVLDLDHTLIHSMKTSNLSKAEKYLIKEEKSGSRKDLRKYNNRLVKFRPFVEEFLKEANK 138
Query: 299 LYEVVVFTASVSRYGDPLLDILDKDKTIHHRLFRDSCY-NYEGNYIKNLSQIGRPLSDMI 357
L+ + +T S YG ++ ++D +K F D E +K L + ++
Sbjct: 139 LFTMTAYTKGGSTYGQAVVRMIDPNKI----YFGDRIITRKESPDLKTLDLVLADERGIV 194
Query: 358 ILDNSPASYIFHPQHAIPISSWFSDAHD 385
I+DN+P + H ++ + I+S+F +D
Sbjct: 195 IVDNTPNVWPHHKRNLLEITSYFYFKND 222
>ECU07g0890 [K] KOG0323 TFIIF-interacting CTD phosphatases including
NLI-interacting factor
Length = 411
Score = 51.2 bits (121), Expect = 3e-06
Identities = 39/123 (31%), Positives = 69/123 (55%), Gaps = 9/123 (7%)
Query: 244 KKCLVLDLDETLVHSSFKYLRTADFVIPVEIDNQVHNVYVIKRPGVDEFLRRITELYEVV 303
K LVLDLD+T++H+++ + + + ID + V + RP +D LRRI++LYE+
Sbjct: 60 KLILVLDLDQTVLHTTYG-TSSLEGTVKFVIDRCRYCVKL--RPNLDYMLRRISKLYEIH 116
Query: 304 VFTASVSRYGDPLLDILD-KDKTIHHRLF-RDSCYNYEGNYIKNLSQI-GRPLSDMIILD 360
V+T Y + +++I+D K R+ RD +G +K LS++ +++ILD
Sbjct: 117 VYTMGTRAYAERIVEIIDPSGKYFDDRIITRD---ENQGVLVKRLSRLFPHDHRNIVILD 173
Query: 361 NSP 363
+ P
Sbjct: 174 DRP 176
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.134 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,883,438
Number of Sequences: 60738
Number of extensions: 676114
Number of successful extensions: 1582
Number of sequences better than 1.0e-05: 39
Number of HSP's better than 0.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1508
Number of HSP's gapped (non-prelim): 44
length of query: 414
length of database: 30,389,216
effective HSP length: 109
effective length of query: 305
effective length of database: 23,768,774
effective search space: 7249476070
effective search space used: 7249476070
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)