ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI4145 suspect: LH O KOG3496 Posttranslational modification, protein turnover, chaperones Cytochrome c oxidase assembly protein/Cu2+ chaperone COX17
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI4145 1446565 1446374 -64
(64 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores:
Score E
Sequences producing significant alignments: (bits) Value
YLL009c [O] KOG3496 Cytochrome c oxidase assembly protein/Cu2+ c... 65 2e-11
>YLL009c [O] KOG3496 Cytochrome c oxidase assembly protein/Cu2+ chaperone
COX17
Length = 69
Score = 64.7 bits (156), Expect = 2e-11
Identities = 28/37 (75%), Positives = 30/37 (80%)
Query: 28 EKEARDECLLFNGQESGKCDELIAKYKTCMKGYGFEV 64
EKE RD C+LFNGQ+S KC E I KYK CMKGYGFEV
Sbjct: 29 EKEERDTCILFNGQDSEKCKEFIEKYKECMKGYGFEV 65
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.310 0.129 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,320,462
Number of Sequences: 60738
Number of extensions: 87784
Number of successful extensions: 101
Number of sequences better than 1.0e-05: 1
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100
Number of HSP's gapped (non-prelim): 1
length of query: 64
length of database: 30,389,216
effective HSP length: 40
effective length of query: 24
effective length of database: 27,959,696
effective search space: 671032704
effective search space used: 671032704
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)