ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI4174 check: MH A KOG0338 RNA processing and modification ATP-dependent RNA helicase
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI4174 1454735 1456978 748
(748 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YLL008w [A] KOG0338 ATP-dependent RNA helicase 822 0.0
SPAC30D11.03 [A] KOG0338 ATP-dependent RNA helicase 459 e-129
Hs19743937 [A] KOG0338 ATP-dependent RNA helicase 370 e-102
7304081 [A] KOG0338 ATP-dependent RNA helicase 358 2e-98
CE27030 [A] KOG0338 ATP-dependent RNA helicase 341 2e-93
At4g16630 [A] KOG0338 ATP-dependent RNA helicase 315 2e-85
CE00337 [A] KOG0330 ATP-dependent RNA helicase 276 8e-74
Hs20149629 [A] KOG0330 ATP-dependent RNA helicase 262 2e-69
7298752 [A] KOG0330 ATP-dependent RNA helicase 254 4e-67
SPAC823.08c [A] KOG0330 ATP-dependent RNA helicase 251 3e-66
YHR065c [A] KOG0330 ATP-dependent RNA helicase 244 3e-64
At5g60990 [A] KOG0330 ATP-dependent RNA helicase 241 3e-63
Hs19923595 [A] KOG0337 ATP-dependent RNA helicase 241 4e-63
SPAC31A2.07c [A] KOG0337 ATP-dependent RNA helicase 235 2e-61
At1g16280 [A] KOG0340 ATP-dependent RNA helicase 234 5e-61
YMR290c [A] KOG0342 ATP-dependent RNA helicase pitchoune 233 6e-61
ECU10g0440 [A] KOG0330 ATP-dependent RNA helicase 232 1e-60
SPAC1F7.02c [A] KOG0342 ATP-dependent RNA helicase pitchoune 223 6e-58
7291960_2 [A] KOG0337 ATP-dependent RNA helicase 223 8e-58
SPBC543.06c [A] KOG0340 ATP-dependent RNA helicase 223 1e-57
At3g18600 [A] KOG0342 ATP-dependent RNA helicase pitchoune 220 5e-57
YDL031w [A] KOG0337 ATP-dependent RNA helicase 219 9e-57
At1g77050 [A] KOG0337 ATP-dependent RNA helicase 219 1e-56
SPBC17D1.06 [A] KOG0331 ATP-dependent RNA helicase 219 2e-56
YHR169w [A] KOG0340 ATP-dependent RNA helicase 218 2e-56
7303950 [A] KOG0340 ATP-dependent RNA helicase 214 3e-55
Hs11321632 [A] KOG0339 ATP-dependent RNA helicase 212 1e-54
7298204 [A] KOG0335 ATP-dependent RNA helicase 211 4e-54
At2g47330 [A] KOG0339 ATP-dependent RNA helicase 209 1e-53
CE27553 [A] KOG0337 ATP-dependent RNA helicase 208 2e-53
ECU10g1680 [A] KOG0343 RNA Helicase 208 3e-53
At2g42520 [A] KOG0335 ATP-dependent RNA helicase 207 4e-53
At5g65900 [A] KOG0342 ATP-dependent RNA helicase pitchoune 207 6e-53
At5g51280 [A] KOG0341 DEAD-box protein abstrakt 206 8e-53
Hs4758140 [A] KOG0326 ATP-dependent RNA helicase 206 1e-52
SPCC63.11 [A] KOG0333 U5 snRNP-like RNA helicase subunit 206 1e-52
At3g58570 [A] KOG0335 ATP-dependent RNA helicase 205 2e-52
At1g31970 [A] KOG0331 ATP-dependent RNA helicase 204 5e-52
7300808 [A] KOG0342 ATP-dependent RNA helicase pitchoune 204 5e-52
At2g33730 [A] KOG0333 U5 snRNP-like RNA helicase subunit 203 9e-52
At5g63120 [A] KOG0331 ATP-dependent RNA helicase 202 1e-51
Hs13514831 [A] KOG0343 RNA Helicase 202 2e-51
CE09901 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 201 3e-51
Hs13787206 [A] KOG0342 ATP-dependent RNA helicase pitchoune 201 4e-51
YGL078c [A] KOG0331 ATP-dependent RNA helicase 200 6e-51
At5g08620 [A] KOG0342 ATP-dependent RNA helicase pitchoune 200 6e-51
At4g33370 [A] KOG0341 DEAD-box protein abstrakt 200 8e-51
CE25231 [A] KOG0343 RNA Helicase 199 1e-50
7294797 [A] KOG0339 ATP-dependent RNA helicase 199 1e-50
YJL033w [A] KOG0343 RNA Helicase 199 1e-50
7299019 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 199 2e-50
7298989 [A] KOG0336 ATP-dependent RNA helicase 199 2e-50
At1g54270 [J] KOG0327 Translation initiation factor 4F helicase ... 198 2e-50
CE01341 [J] KOG0327 Translation initiation factor 4F helicase su... 198 3e-50
At3g06480 [A] KOG0331 ATP-dependent RNA helicase 198 3e-50
SPCC10H11.01 [A] KOG0334 RNA helicase 197 4e-50
At3g58510 [A] KOG0335 ATP-dependent RNA helicase 197 5e-50
At3g13920 [J] KOG0327 Translation initiation factor 4F helicase ... 196 8e-50
7296891 [A] KOG0341 DEAD-box protein abstrakt 196 8e-50
YDL160c [A] KOG0326 ATP-dependent RNA helicase 196 1e-49
Hs21071032 [A] KOG0341 DEAD-box protein abstrakt 196 1e-49
CE28031 [A] KOG0334 RNA helicase 196 1e-49
CE27427 [A] KOG0334 RNA helicase 196 1e-49
Hs7661920 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 196 1e-49
7297048 [J] KOG0327 Translation initiation factor 4F helicase su... 196 1e-49
SPAC1093.05 [A] KOG0343 RNA Helicase 195 2e-49
Hs4503531 [J] KOG0327 Translation initiation factor 4F helicase ... 195 2e-49
CE26853 [A] KOG0342 ATP-dependent RNA helicase pitchoune 195 2e-49
CE23832 [A] KOG0341 DEAD-box protein abstrakt 195 2e-49
At5g08610 [A] KOG0342 ATP-dependent RNA helicase pitchoune 195 2e-49
Hs4503529 [J] KOG0327 Translation initiation factor 4F helicase ... 194 3e-49
Hs10346129 [A] KOG0336 ATP-dependent RNA helicase 194 3e-49
At1g55150 [A] KOG0331 ATP-dependent RNA helicase 194 3e-49
At5g63630 [A] KOG0342 ATP-dependent RNA helicase pitchoune 193 7e-49
At1g20920 [A] KOG0334 RNA helicase 193 9e-49
YDR021w [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 192 1e-48
CE18785 [A] KOG0331 ATP-dependent RNA helicase 192 2e-48
At5g14610 [A] KOG0331 ATP-dependent RNA helicase 192 2e-48
At3g01540 [A] KOG0331 ATP-dependent RNA helicase 192 2e-48
7293060 [A] KOG0334 RNA helicase 192 2e-48
7299061 [A] KOG0335 ATP-dependent RNA helicase 192 2e-48
CE03025 [A] KOG0329 ATP-dependent RNA helicase 191 3e-48
At1g72730 [J] KOG0327 Translation initiation factor 4F helicase ... 191 3e-48
CE26887 [A] KOG0333 U5 snRNP-like RNA helicase subunit 191 4e-48
CE24878 [A] KOG0333 U5 snRNP-like RNA helicase subunit 191 4e-48
SPAC1F5.10 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1... 190 6e-48
At3g61240 [A] KOG0326 ATP-dependent RNA helicase 190 6e-48
Hs7662318 [A] KOG0334 RNA helicase 190 8e-48
ECU08g1080 [A] KOG0331 ATP-dependent RNA helicase 190 8e-48
Hs4759278 [A] KOG0333 U5 snRNP-like RNA helicase subunit 189 1e-47
Hs21040371 [A] KOG0329 ATP-dependent RNA helicase 189 1e-47
Hs17474597 [A] KOG0333 U5 snRNP-like RNA helicase subunit 189 1e-47
7293369 [A] KOG0343 RNA Helicase 189 1e-47
CE23814 [A] KOG0340 ATP-dependent RNA helicase 189 2e-47
CE17559 [A] KOG0339 ATP-dependent RNA helicase 189 2e-47
7298459 [A] KOG0333 U5 snRNP-like RNA helicase subunit 189 2e-47
SPAC1006.07 [J] KOG0327 Translation initiation factor 4F helicas... 188 2e-47
At5g54910 [A] KOG0343 RNA Helicase 187 4e-47
At3g22330 [A] KOG0331 ATP-dependent RNA helicase 187 5e-47
YFL002c [A] KOG0345 ATP-dependent RNA helicase 186 9e-47
CE00839 [A] KOG0326 ATP-dependent RNA helicase 186 9e-47
At3g22310 [A] KOG0331 ATP-dependent RNA helicase 186 9e-47
YKR059w [J] KOG0327 Translation initiation factor 4F helicase su... 186 1e-46
YJL138c [J] KOG0327 Translation initiation factor 4F helicase su... 186 1e-46
7296990 [A] KOG0329 ATP-dependent RNA helicase 186 1e-46
Hs14251212 [K] KOG4284 DEAD box protein 185 3e-46
SPAC17G6.14c [A] KOG0329 ATP-dependent RNA helicase 184 3e-46
At2g45810 [A] KOG0326 ATP-dependent RNA helicase 184 3e-46
YDR243c [A] KOG0333 U5 snRNP-like RNA helicase subunit 184 4e-46
CE07736 [A] KOG0335 ATP-dependent RNA helicase 184 4e-46
At5g05450 [A] KOG0345 ATP-dependent RNA helicase 184 4e-46
Hs4758112 [A] KOG0329 ATP-dependent RNA helicase 183 7e-46
CE25121 [A] KOG0335 ATP-dependent RNA helicase 183 7e-46
CE28369 [A] KOG0335 ATP-dependent RNA helicase 183 1e-45
CE24451 [A] KOG0335 ATP-dependent RNA helicase 183 1e-45
At5g11170 [A] KOG0329 ATP-dependent RNA helicase 183 1e-45
At5g11200 [A] KOG0329 ATP-dependent RNA helicase 182 1e-45
Hs5453840_1 [A] KOG0331 ATP-dependent RNA helicase 182 1e-45
SPBC776.09 [A] KOG0326 ATP-dependent RNA helicase 182 2e-45
CE09012 [A] KOG0335 ATP-dependent RNA helicase 181 3e-45
7290853 [A] KOG0331 ATP-dependent RNA helicase 181 3e-45
SPCC1795.11 [A] KOG0335 ATP-dependent RNA helicase 181 5e-45
SPBC4F6.07c [A] KOG0347 RNA helicase 179 1e-44
Hs9507237 [A] KOG0335 ATP-dependent RNA helicase 179 1e-44
SPBP8B7.16c [A] KOG0331 ATP-dependent RNA helicase 179 1e-44
At1g71370 [A] KOG0345 ATP-dependent RNA helicase 178 2e-44
Hs9506931 [A] KOG0346 RNA helicase 178 3e-44
7296646 [A] KOG0331 ATP-dependent RNA helicase 178 3e-44
YNL112w [A] KOG0331 ATP-dependent RNA helicase 177 4e-44
YOR204w [A] KOG0335 ATP-dependent RNA helicase 177 5e-44
Hs13514813 [A] KOG0335 ATP-dependent RNA helicase 177 7e-44
At3g16840 [A] KOG0347 RNA helicase 177 7e-44
Hs13775232 [A] KOG0331 ATP-dependent RNA helicase 176 9e-44
At3g09620 [A] KOG0334 RNA helicase 176 9e-44
Hs22057246 [A] KOG0336 ATP-dependent RNA helicase 176 1e-43
CE22474 [A] KOG0336 ATP-dependent RNA helicase 176 1e-43
At3g19760 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 176 1e-43
Hs13514809 [A] KOG0335 ATP-dependent RNA helicase 175 3e-43
ECU02g0670 [A] KOG0335 ATP-dependent RNA helicase 175 3e-43
At2g40700 [A] KOG0348 ATP-dependent RNA helicase 175 3e-43
At1g51380 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 175 3e-43
7295505 [A] KOG0346 RNA helicase 175 3e-43
7299006 [A] KOG0345 ATP-dependent RNA helicase 174 4e-43
Hs4758138 [A] KOG0331 ATP-dependent RNA helicase 173 8e-43
7297629 [A] KOG0326 ATP-dependent RNA helicase 173 8e-43
SPAC22F3.08c [A] KOG0344 ATP-dependent RNA helicase 172 1e-42
At1g63250 [A] KOG0342 ATP-dependent RNA helicase pitchoune 172 1e-42
YPL119c [A] KOG0335 ATP-dependent RNA helicase 172 2e-42
At2g07750 [A] KOG0342 ATP-dependent RNA helicase pitchoune 171 3e-42
7295314 [A] KOG0331 ATP-dependent RNA helicase 171 3e-42
YDL084w [A] KOG0329 ATP-dependent RNA helicase 171 4e-42
ECU09g1200 [J] KOG0327 Translation initiation factor 4F helicase... 171 5e-42
SPCC285.03 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 170 8e-42
YBR142w [A] KOG0347 RNA helicase 169 1e-41
Hs13787209 [A] KOG0331 ATP-dependent RNA helicase 169 1e-41
CE11190 [A] KOG0347 RNA helicase 169 1e-41
Hs15316941 [A] KOG0344 ATP-dependent RNA helicase 169 2e-41
SPBC24C6.02 [A] KOG0345 ATP-dependent RNA helicase 167 4e-41
SPBC21H7.04 [A] KOG0348 ATP-dependent RNA helicase 167 4e-41
Hs6005743 [A] KOG0332 ATP-dependent RNA helicase 167 5e-41
YGL171w [A] KOG0344 ATP-dependent RNA helicase 166 9e-41
YBR237w [A] KOG0334 RNA helicase 166 9e-41
Hs8922886 [A] KOG0332 ATP-dependent RNA helicase 166 9e-41
ECU09g1640 [A] KOG0326 ATP-dependent RNA helicase 166 1e-40
At4g00660 [A] KOG0326 ATP-dependent RNA helicase 166 1e-40
At3g09720 [A] KOG0344 ATP-dependent RNA helicase 165 2e-40
7294824 [K] KOG4284 DEAD box protein 163 8e-40
YDR194c [A] KOG0342 ATP-dependent RNA helicase pitchoune 163 1e-39
Hs9506609 [A] KOG0340 ATP-dependent RNA helicase 162 1e-39
Hs13129006 [A] KOG0331 ATP-dependent RNA helicase 162 1e-39
CE25531 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 162 2e-39
7293941 [A] KOG0344 ATP-dependent RNA helicase 162 2e-39
Hs17505907 [A] KOG0348 ATP-dependent RNA helicase 161 3e-39
ECU10g0690 [A] KOG0345 ATP-dependent RNA helicase 161 3e-39
YOR046c [A] KOG0332 ATP-dependent RNA helicase 161 4e-39
At3g53110 [A] KOG0332 ATP-dependent RNA helicase 160 9e-39
CE18221 [A] KOG0332 ATP-dependent RNA helicase 159 1e-38
CE18220 [A] KOG0332 ATP-dependent RNA helicase 159 1e-38
CE18219 [A] KOG0332 ATP-dependent RNA helicase 159 1e-38
SPBC12C2.06 [A] KOG0332 ATP-dependent RNA helicase 154 5e-37
YLR276c [A] KOG0346 RNA helicase 152 1e-36
Hs9966805 [A] KOG0347 RNA helicase 152 2e-36
At5g62190 [A] KOG0331 ATP-dependent RNA helicase 152 2e-36
At1g12770_1 [J] KOG0327 Translation initiation factor 4F helicas... 152 2e-36
SPBC691.04 [A] KOG0342 ATP-dependent RNA helicase pitchoune 151 4e-36
At4g34910 [A] KOG0346 RNA helicase 149 1e-35
At4g09730 [A] KOG0331 ATP-dependent RNA helicase 149 1e-35
Hs4826688 [J] KOG0327 Translation initiation factor 4F helicase ... 149 2e-35
Hs8922976 [A] KOG0330 ATP-dependent RNA helicase 148 3e-35
At4g15850 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 148 3e-35
CE27728 [A] KOG0346 RNA helicase 147 4e-35
CE03821 [A] KOG0345 ATP-dependent RNA helicase 147 4e-35
CE06239 [A] KOG0344 ATP-dependent RNA helicase 146 1e-34
Hs21327697 [A] KOG0332 ATP-dependent RNA helicase 145 2e-34
CE29052 [A] KOG0335 ATP-dependent RNA helicase 145 2e-34
7302399 [A] KOG0347 RNA helicase 145 2e-34
ECU02g1520 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1... 145 3e-34
CE11402 [A] KOG0334 RNA helicase 145 3e-34
HsM7019399 [A] KOG0332 ATP-dependent RNA helicase 144 4e-34
7294064 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 144 4e-34
At3g06980 [A] KOG0331 ATP-dependent RNA helicase 144 6e-34
SPCC1494.06c [A] KOG0346 RNA helicase 142 2e-33
Hs22054507 [A] KOG0342 ATP-dependent RNA helicase pitchoune 141 3e-33
CE01338 [J] KOG0327 Translation initiation factor 4F helicase su... 140 5e-33
Hs20551983 [A] KOG0345 ATP-dependent RNA helicase 140 7e-33
YKR024c [A] KOG0348 ATP-dependent RNA helicase 137 5e-32
YNR038w [A] KOG0350 DEAD-box ATP-dependent RNA helicase 136 1e-31
7296165 [A] KOG0330 ATP-dependent RNA helicase 135 3e-31
CE28485 [K] KOG4284 DEAD box protein 132 1e-30
At1g71280 [A] KOG0345 ATP-dependent RNA helicase 129 2e-29
Hs21040373 [A] KOG0329 ATP-dependent RNA helicase 117 6e-26
Hs20336298 [A] KOG0348 ATP-dependent RNA helicase 116 1e-25
CE27336 [A] KOG0334 RNA helicase 115 3e-25
ECU06g1250 [A] KOG0337 ATP-dependent RNA helicase 112 2e-24
CE00456 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 112 2e-24
ECU05g1270 [A] KOG0331 ATP-dependent RNA helicase 111 4e-24
Hs17474878 [A] KOG0333 U5 snRNP-like RNA helicase subunit 109 2e-23
7293348 [A] KOG0348 ATP-dependent RNA helicase 107 5e-23
CE26264 [A] KOG0335 ATP-dependent RNA helicase 105 3e-22
CE29051 [A] KOG0335 ATP-dependent RNA helicase 102 2e-21
7296530 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 100 1e-20
CE27641 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 92 3e-18
At5g19210 [J] KOG0327 Translation initiation factor 4F helicase ... 92 4e-18
Hs17475661 [J] KOG0327 Translation initiation factor 4F helicase... 89 3e-17
YGL064c [A] KOG0335 ATP-dependent RNA helicase 88 5e-17
CE06825 [A] KOG0335 ATP-dependent RNA helicase 87 9e-17
7290730 [A] KOG0331 ATP-dependent RNA helicase 87 1e-16
Hs20555745 [A] KOG0326 ATP-dependent RNA helicase 81 7e-15
ECU07g1060 [A] KOG0344 ATP-dependent RNA helicase 80 9e-15
Hs22070384 [A] KOG0342 ATP-dependent RNA helicase pitchoune 79 3e-14
Hs20548087 [J] KOG0327 Translation initiation factor 4F helicase... 79 3e-14
CE28975 [A] KOG0335 ATP-dependent RNA helicase 75 4e-13
CE15167 [A] KOG0335 ATP-dependent RNA helicase 74 6e-13
At1g59990 [A] KOG0333 U5 snRNP-like RNA helicase subunit 70 9e-12
Hs22045464 [A] KOG0343 RNA Helicase 70 1e-11
Hs22057430 [J] KOG0327 Translation initiation factor 4F helicase... 68 4e-11
Hs17436931 [A] KOG0342 ATP-dependent RNA helicase pitchoune 68 6e-11
Hs4826686 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 67 8e-11
Hs18595975 [A] KOG0335 ATP-dependent RNA helicase 65 3e-10
CE27320 [A] KOG0335 ATP-dependent RNA helicase 64 1e-09
Hs22044561 [A] KOG0331 ATP-dependent RNA helicase 60 2e-08
At2g28600 [A] KOG0339 ATP-dependent RNA helicase 59 4e-08
SPAC9.05 [R] KOG0354 DEAD-box like helicase 57 8e-08
CE13130_2 [L] KOG0351 ATP-dependent DNA helicase 54 9e-07
At4g35740_2 [L] KOG0351 ATP-dependent DNA helicase 53 2e-06
7300752 [R] KOG0354 DEAD-box like helicase 52 4e-06
SPAC20H4.04 [R] KOG0354 DEAD-box like helicase 51 7e-06
>YLL008w [A] KOG0338 ATP-dependent RNA helicase
Length = 752
Score = 822 bits (2122), Expect = 0.0
Identities = 454/740 (61%), Positives = 520/740 (69%), Gaps = 20/740 (2%)
Query: 1 MAVKKFRSFDDFVPTISDSEEDVPDLDASDDEMEXXXXXXXXXXXXXXXXXXQQQGSHLD 60
+ KK+ + D FVPTISDSE+DVP LD+SDDE + +G +LD
Sbjct: 3 VGTKKYSNLD-FVPTISDSEDDVPILDSSDDE-KVEAKKTTKKRKGKNNKKKVSEGDNLD 60
Query: 61 EDVHEDLNPEFQFSIDSGEVTTNFAGWDF--QGDEKSDEVE---KKDVDLDGIIRRKGGL 115
EDVHEDL+ F+F +D+ + T+NF GW+F +G+ D+ E KKDVDLD IIRRKGGL
Sbjct: 61 EDVHEDLDAGFKFDLDADDTTSNFQGWNFLAEGESNKDDAEAFVKKDVDLDKIIRRKGGL 120
Query: 116 IMMAATGSDAXXXXXXXXXXXXXXXXXXXXXXXXXXXALDGFGMGVKRKATXXXXXXXXX 175
+ MA S A+DGFGMG
Sbjct: 121 VKMAHIDSKQEEETEKEKVEKENDSDDEEL-------AMDGFGMGAPMN-NGDENQSEEE 172
Query: 176 XXXXXXXXXXXKKTEMSQADLGKG-KXXXXXXXXXXXXXXXXXXXXXXXSADAKKIVHKT 234
++ E + L KG K +AKK +++
Sbjct: 173 EEEEEKEEEEEEEEEQEEMTLEKGGKDDEIDEEDDSEEAKADFYAPETEGDEAKKQMYEN 232
Query: 235 FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 294
FNSLSLSRPVLKGL SLGY PSPIQSA IPIALLGKDIIAGAVTGSGKTAAFMIPIIER
Sbjct: 233 FNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 292
Query: 295 LLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKT 354
LLYKPA IASTRV+VL PTRELAIQVADVGK I +FV+G+TFGLAVGGLNLRQQEQ LK+
Sbjct: 293 LLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKS 352
Query: 355 RPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKRQT 414
RPDIVIATPGRFIDH+RNSASF+VDSVEILV+DEADRMLEEGFQ+EL EIM L+PS RQ
Sbjct: 353 RPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQN 412
Query: 415 LLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQLIR 474
LLFSATMN PVRIMIDPPK+AA KLTQEF+RIRKRDHLKPALL+ LIR
Sbjct: 413 LLFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLIR 472
Query: 475 KLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQVPV 534
KLD T QKRIVVFVARKETAH+LRI++GLLGM VGELHGSLTQEQRL SVN FK+L+VPV
Sbjct: 473 KLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPV 532
Query: 535 LICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESSQDRSI 594
LICTDLASRGLDIPKIEVVIN+DMPK+YEIYLHRVGRTARAGREGRSVTFVGESSQDRSI
Sbjct: 533 LICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRSI 592
Query: 595 VRSAIRSVEENAE--SGKALSRNVDWTQVEQVNSLIGAKGDVVXXXXXXXXXXXXXLRAE 652
VR+AI+SVEEN GKAL RNVDW Q+E+ N L+ + D + LRAE
Sbjct: 593 VRAAIKSVEENKSLTQGKALGRNVDWVQIEETNKLVESMNDTIEDILVEEKEEKEILRAE 652
Query: 653 MELRKGENMLKHKEEISARPRRTWFQSEAEKKNSKMLQVLAXXXXXXXXXXXXQQEALAE 712
M+LRKGENMLKHK+EI ARPRRTWFQSE++KKNSK+L L+ ++EA A+
Sbjct: 653 MQLRKGENMLKHKKEIQARPRRTWFQSESDKKNSKVLGALSRNKKVTNSKKRKREEAKAD 712
Query: 713 --NPRLYKKTQKDRVEYQER 730
R Y+KT+ DR+ QER
Sbjct: 713 GNGARSYRKTKTDRIADQER 732
>SPAC30D11.03 [A] KOG0338 ATP-dependent RNA helicase
Length = 754
Score = 459 bits (1182), Expect = e-129
Identities = 278/734 (37%), Positives = 394/734 (52%), Gaps = 42/734 (5%)
Query: 3 VKKFRSFDDFVPTISDSEEDVP----DLDASDDEMEXXXXXXXXXXXXXXXXXXQQQGSH 58
++K + DDF+ TI DSE+D+ D DA D+EM G
Sbjct: 38 IRKMKVQDDFILTIDDSEDDIHYDDYDADAVDEEMPSNVELKKKSKKATPAKDSDFNGEF 97
Query: 59 LDE-DVHEDLNPEFQFSIDSGEVTTNFAGWDFQGDEKSDEVEKKD-VDLDGIIRRKGGLI 116
L E DV++DL+ + WDF K++ + VDLD II R
Sbjct: 98 LFEADVNKDLSSATDMN------------WDFDMGSKTESNRASNTVDLDAIISRN---- 141
Query: 117 MMAATGSDAXXXXXXXXXXXXXXXXXXXXXXXXXXXALDGFGMG-VKRKATXXXXXXXXX 175
D A+DGFG G +
Sbjct: 142 ---RKPDDDEFPSSFPSEEELQEPEQENIDSDDEDLAIDGFGAGAIAENEDESSQDESES 198
Query: 176 XXXXXXXXXXXKKTEMSQADLGKGKXXXXXXXXXXXXXXXXXXXXXXXSADAKKIV---H 232
+S D K ++ H
Sbjct: 199 EEEDDITEPVPSFANISTQDFNSDSAAGSSDSEEDEEEIAKKNAFFAEGDKEKSMMTTTH 258
Query: 233 KTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPII 292
+F S++LSRP+LKGL +LG+ P+ IQ IP+ALLGKDI+ AVTGSGKTAAF++PI+
Sbjct: 259 SSFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPIL 318
Query: 293 ERLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQAL 352
ERLLY+P + +TRV++L PTRELA+Q V I F + + L +GGL+L+ QEQ L
Sbjct: 319 ERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTD-IMVCLCIGGLSLKLQEQEL 377
Query: 353 KTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKR 412
+ RPDIVIATPGRFIDH+RNS F+V+++EI+V+DEADRMLE+GF +EL EI+ P R
Sbjct: 378 RKRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACPKSR 437
Query: 413 QTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIR-KRDHLKPALLYQ 471
QT+LFSATM PVR+ +D K A LTQEF+R+R +R+ L+PA+L
Sbjct: 438 QTMLFSATMTDKVDDLIRLSLNRPVRVFVDNKKTTAKLLTQEFVRVRPQRELLRPAMLIY 497
Query: 472 LIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQ 531
L ++L +R ++F K AHK+R++ GLL + E+HGSL+QEQR++++ +F+ +
Sbjct: 498 LCKEL---FHRRTIIFFRSKAFAHKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGK 554
Query: 532 VPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESSQD 591
L+ TD+ASRG+DI IEVVIN++ P T+E+YLHRVGRTARAGR GR++T GE D
Sbjct: 555 CNYLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSGRAITLAGEG--D 612
Query: 592 RSIVRSAIRSVEENAESGKALSRNVDWTQVEQVNSLIGAKGDVVXXXXXXXXXXXXXLRA 651
R +++ ++ +A++ K ++RN+D+ +VE+ I VV A
Sbjct: 613 RKVLKGVFKN--SSAQNTKLVNRNLDFNKVEKFGKEIEELEPVVQKVLDEEKQERELKIA 670
Query: 652 EMELRKGENMLKHKEEISARPRRTWFQSEAEKKNSKMLQVLAXXXXXXXXXXXXQQEALA 711
E +L+KGEN++K+ +EI +RP RTWFQSE +K+ SK + +Q
Sbjct: 671 ERDLKKGENIMKYGDEIRSRPARTWFQSEKDKQASK----ASEAKDKKSLAKRKKQMEKE 726
Query: 712 ENPRLYKKTQKDRV 725
E PR YKKT+ DR+
Sbjct: 727 EVPRAYKKTKNDRL 740
>Hs19743937 [A] KOG0338 ATP-dependent RNA helicase
Length = 796
Score = 370 bits (950), Expect = e-102
Identities = 200/461 (43%), Positives = 298/461 (64%), Gaps = 13/461 (2%)
Query: 234 TFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 293
+F ++LSRP+LK + ++G+ P+PIQ A IP+ LLGKDI A A TG+GKTAAF +P++E
Sbjct: 219 SFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLE 278
Query: 294 RLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALK 353
RL+YKP TRV+VL PTREL IQV V + + +F N +T LAVGGL+++ QE AL+
Sbjct: 279 RLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCN-ITTCLAVGGLDVKSQEAALR 337
Query: 354 TRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKRQ 413
PDI+IATPGR IDHL N SF + S+E+L++DEADRML+E F+E+++EI+ + RQ
Sbjct: 338 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 397
Query: 414 TLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIR-KRDHLKPALLYQL 472
T+LFSATM PVRI ++ A L QEFIRIR R+ + A++ L
Sbjct: 398 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 457
Query: 473 IRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQV 532
+ + T +++F K+ AH++ I+LGL+G+QVGELHG+L+Q QRL+++ FK Q+
Sbjct: 458 LTR---TFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQI 514
Query: 533 PVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESSQDR 592
+L+ TD+A+RGLDI ++ VINF MP T + Y+HRVGRTARAGR GRSV+ VGE +R
Sbjct: 515 DILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGE--DER 572
Query: 593 SIVRSAIRSVEENAESGKALSRNVDWTQVEQVNSLIGAKGDVVXXXXXXXXXXXXXLRAE 652
+++ +++ + ++ + L ++V + + I V ++E
Sbjct: 573 KMLKEIVKAAKAPVKA-RILPQDV----ILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSE 627
Query: 653 MELRKGENML-KHKEEISARPRRTWFQSEAEKKNSKMLQVL 692
++ + +L K KE + P R+WFQ++ E+K K+ + L
Sbjct: 628 AQINTAKRLLEKGKEAVVQEPERSWFQTKEERKKEKIAKAL 668
>7304081 [A] KOG0338 ATP-dependent RNA helicase
Length = 782
Score = 358 bits (918), Expect = 2e-98
Identities = 201/457 (43%), Positives = 292/457 (62%), Gaps = 19/457 (4%)
Query: 234 TFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 293
+F ++LSRP+++ +G LGY P+PIQ++ IP+ALLG+DI A TG+GKTAA+M+P +E
Sbjct: 158 SFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLE 217
Query: 294 RLLYKPAHI-ASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQAL 352
RLLY+P + A TRV+VL PTREL QV V K + +F + GLA+GGL+++ QE L
Sbjct: 218 RLLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTT-IDVGLAIGGLDVKAQEAVL 276
Query: 353 KTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKR 412
+ PDIVIATPGR IDH++N+ SF++DS+E+L++DEADRML+E F E+++EI++ R
Sbjct: 277 RQNPDIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTR 336
Query: 413 QTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIR--KRDHLKPALLY 470
QT+LFSATM+ P+++ ++ +Q A L QEFIRIR K +P L
Sbjct: 337 QTMLFSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILAS 396
Query: 471 QLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSL 530
+ R T +VFV K+ AH+L I+LGLLG++ GELHG+LTQ+QRL+S+ FK
Sbjct: 397 LICR----TFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEE 452
Query: 531 QVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESSQ 590
Q+ VLI TD+A+RGLDI ++ VINF MP T E Y+HRVGRTARAGR G SV+ GE +
Sbjct: 453 QIDVLIATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGE--K 510
Query: 591 DRSIVRSAIRSVEENAESGKALSRNVDWTQVEQVNSLIGAKGDVVXXXXXXXXXXXXXLR 650
+R IV+ I++ E + +R + +E+ + + + + +
Sbjct: 511 ERKIVKDIIKNAESTIK-----NRIIPPEIIEKYRNKLTSLEPEIQNILDEEQAERQLAK 565
Query: 651 AEMELRKGENMLKHKEEISARPRRTWFQSEAEKKNSK 687
E +L K E L + RR WFQ++ +++ K
Sbjct: 566 TEQQLSKTERKLLGQ----TNERRGWFQTKQQREAEK 598
>CE27030 [A] KOG0338 ATP-dependent RNA helicase
Length = 763
Score = 341 bits (875), Expect = 2e-93
Identities = 197/478 (41%), Positives = 285/478 (59%), Gaps = 36/478 (7%)
Query: 231 VHKTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIP 290
V+ +F ++LSR +LK GY+ P+PIQ A IP+AL GKDI A A TG+GKTAAF++P
Sbjct: 146 VNVSFEQMNLSRQILKACSGAGYSDPTPIQQACIPVALTGKDICACAATGTGKTAAFVLP 205
Query: 291 IIERLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQ 350
I+ER++Y+P + TRV+VL PTRELAIQV V + + F+ L L GGL+L+ QE
Sbjct: 206 ILERMIYRPKGASCTRVLVLVPTRELAIQVFQVFRKLSTFIQ-LEVCLCAGGLDLKAQEA 264
Query: 351 ALKTRPDIVIATPGRFIDHLRNSASFSVDSVEI------------------------LVI 386
AL++ PD+V+ATPGR IDHL NS SF++ ++E+ LV+
Sbjct: 265 ALRSGPDVVVATPGRLIDHLHNSPSFNLSNIEVFFKTPNIPPKKNSRKICKIPNFQVLVL 324
Query: 387 DEADRMLEEGFQEELQEIMSLIPSKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQ 446
DEADRMLEE F++++ E++ L RQTLLFSATM PV+I I+
Sbjct: 325 DEADRMLEEAFRDQMNELIRLCAQNRQTLLFSATMTEEIDELASMSLQKPVKIFINENTD 384
Query: 447 AADKLTQEFIRIRK-RDHLKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLG 505
A KL QEFIRIR R+ + A++ L+ + T Q +VFV K+ +++I+LGLLG
Sbjct: 385 TALKLRQEFIRIRAGRETDREAMVAALVTR---TFQTNTIVFVRTKKDCQRMQILLGLLG 441
Query: 506 MQVGELHGSLTQEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIY 565
++VG++ SLTQ QR++S++ FK ++ VL+ TDLASRGLDI ++ VIN +MPK+ + Y
Sbjct: 442 IKVGQMQSSLTQGQRIESLSKFKKAEIDVLVSTDLASRGLDIEGVQTVINMNMPKSIKQY 501
Query: 566 LHRVGRTARAGREGRSVTFVGESSQDRSIVRSAIRSVEENAESGKALSRNVDWTQVEQVN 625
+HRVGRTARAG+ GRS++ VGE +R +++ + S + + ++ V VE
Sbjct: 502 IHRVGRTARAGKAGRSISLVGE--DERKLLKEIVNSNADRTLKQRLVAPEV----VEAYR 555
Query: 626 SLIGAKGDVVXXXXXXXXXXXXXLRAEMELRKGENMLKHKEEISA-RPRRTWFQSEAE 682
I + + AE + K +N L+ E A RR W E++
Sbjct: 556 RRIDELEETIQQIDEEDRAEKELRIAEASMAKTQNALEVGENGGAPAERRVWMMKESQ 613
>At4g16630 [A] KOG0338 ATP-dependent RNA helicase
Length = 683
Score = 315 bits (807), Expect = 2e-85
Identities = 193/498 (38%), Positives = 283/498 (56%), Gaps = 84/498 (16%)
Query: 234 TFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGK---------- 283
TF L+LSRP+L+ +LGY P+PIQ IP +D+ A A+TGSGK
Sbjct: 168 TFMELNLSRPLLRACETLGYKKPTPIQVQFIPQEW--RDLCASAITGSGKVSTRLMVLCN 225
Query: 284 ----------TAAFMIPIIERLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNG 333
TAAF +P +ERLL++P + +TRV++LTPTRELA+Q+ + +N+ +F +
Sbjct: 226 TEILFRYLTNTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTD- 284
Query: 334 LTFGLAVGGLNLRQQEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRML 393
+ GL VGGL++R+QE L++ PDIV+ATPGR IDHLRNS S +D + +L++DEADR+L
Sbjct: 285 IKCGLIVGGLSVREQEVVLRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 344
Query: 394 EEGFQEELQEIMSLIPSKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQ 453
+ GF E+ E++ L P +RQT+LFSATM P+R+ DP + LT+
Sbjct: 345 QTGFATEITELVRLCPKRRQTMLFSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLTE 404
Query: 454 EFIRIRKRDHLKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHG 513
E++R + P+ K+ AH+L+I+ GL G++ ELHG
Sbjct: 405 EYLR----EFFVPSCAS------------------GTKQAAHRLKILFGLAGLKAAELHG 442
Query: 514 SLTQEQRLQ----------SVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYE 563
+LTQ QRL S+ F+ +V LI TD+A+RGLDI ++ VIN+ P+ +
Sbjct: 443 NLTQAQRLDVRNLGTSALFSLELFRKQEVDFLIATDVAARGLDIIGVQTVINYACPREID 502
Query: 564 IYLHRVGRTARAGREGRSVTFVGESSQDRSIVR------SAIRSVEENAESGKALSR--- 614
Y+HRVGRTARAGREG +VTFV +S DRS+++ + ++ K SR
Sbjct: 503 SYVHRVGRTARAGREGYAVTFVTDS--DRSLLKVITFESTLFLCLKAKKVGSKLKSRVIP 560
Query: 615 ---NVDWTQV-----EQVNSLIGAKGDVVXXXXXXXXXXXXXLRAEMELRKGENMLKHKE 666
V W+Q+ +Q +++I A+ + E+ ENML+H++
Sbjct: 561 EQSIVKWSQIIDEMEDQYSAVISAE------RFHSHSSKNYGIPGEL----AENMLEHRD 610
Query: 667 EISARPRRTWFQSEAEKK 684
EI ARP+RTWF +E EKK
Sbjct: 611 EIYARPKRTWFMTEKEKK 628
>CE00337 [A] KOG0330 ATP-dependent RNA helicase
Length = 489
Score = 276 bits (706), Expect = 8e-74
Identities = 151/360 (41%), Positives = 222/360 (60%), Gaps = 9/360 (2%)
Query: 226 DAKKIVHKTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTA 285
D + + K+F L +S+P+ LG+ PS IQ AA+P AL GKD+I A TGSGKT
Sbjct: 37 DEEDVKEKSFAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTG 96
Query: 286 AFMIPIIERLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNL 345
AF IP+++ LL P +VLTPTRELA Q+ + +G + GL + VGG+++
Sbjct: 97 AFAIPVLQSLLDHPQAFFC---LVLTPTRELAFQIGQQFEALGSGI-GLIAAVIVGGVDM 152
Query: 346 RQQEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIM 405
Q AL RP I++ATPGR +DHL N+ F++ +++ L++DEADR+L F+ EL +I+
Sbjct: 153 AAQAMALARRPHIIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKIL 212
Query: 406 SLIPSKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLK 465
+IP +R+T LFSATM P R+ + + D L Q +I + + + +
Sbjct: 213 KVIPRERRTYLFSATMTKKVSKLERASLRDPARVSVSSRYKTVDNLKQHYIFVPNK-YKE 271
Query: 466 PALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVN 525
L+Y L N++ +VF A T ++ ++L LGMQ LHG ++QE+RL S+N
Sbjct: 272 TYLVYLLNEHAGNSA----IVFCATCATTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSLN 327
Query: 526 NFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFV 585
FKS +L+CTD+A+RGLDIP +++VIN+DMP + Y+HRVGRTARAGR G ++T V
Sbjct: 328 KFKSKAREILVCTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVV 387
>Hs20149629 [A] KOG0330 ATP-dependent RNA helicase
Length = 455
Score = 262 bits (669), Expect = 2e-69
Identities = 145/353 (41%), Positives = 215/353 (60%), Gaps = 9/353 (2%)
Query: 233 KTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPII 292
KTF L ++ + + LG+T P+ IQ AIP+AL G+DII A TGSGKT AF +PI+
Sbjct: 24 KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 83
Query: 293 ERLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQAL 352
LL P + + +VLTPTRELA Q+++ + +G + G+ + VGG++ Q AL
Sbjct: 84 NALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSI-GVQSAVIVGGIDSMSQSLAL 139
Query: 353 KTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKR 412
+P I+IATPGR IDHL N+ F++ +++ LV+DEADR+L F+ E+ +I+ +IP R
Sbjct: 140 AKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDR 199
Query: 413 QTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQL 472
+T LFSATM PV+ + Q +KL Q +I I + K L +
Sbjct: 200 KTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSK--FKDTYLVYI 257
Query: 473 IRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQV 532
+ +L S ++F + + ++L LG LHG ++Q +RL S+N FK+
Sbjct: 258 LNELAGNS---FMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKAR 314
Query: 533 PVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFV 585
+L+ TD+ASRGLDIP ++VV+NFD+P + Y+HRVGRTARAGR G+++TFV
Sbjct: 315 SILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFV 367
>7298752 [A] KOG0330 ATP-dependent RNA helicase
Length = 507
Score = 254 bits (648), Expect = 4e-67
Identities = 141/362 (38%), Positives = 216/362 (58%), Gaps = 9/362 (2%)
Query: 226 DAKKIVHKTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTA 285
DA + T+ L L+ + + L + +PS IQ AIP+AL GKD+I A TGSGKT
Sbjct: 54 DAAEEQKLTWKDLGLNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTG 113
Query: 286 AFMIPIIERLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNL 345
AF +PI+ LL P + +VLTPTRELA Q+ + + +G + G+ + VGG+++
Sbjct: 114 AFALPILHALLENPQRYFA---LVLTPTRELAFQIGEQFEALGSGI-GIKCCVVVGGMDM 169
Query: 346 RQQEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIM 405
Q L +P I+IATPGR +DHL N F++ +++ LV+DEADR+L F+ EL +I+
Sbjct: 170 VAQGLQLAKKPHIIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKIL 229
Query: 406 SLIPSKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLK 465
++P +R+T LFSATM PV++ + Q ++L Q ++ I + K
Sbjct: 230 KVLPRERRTFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVK--YK 287
Query: 466 PALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVN 525
L ++ +L S ++F + K ++L LG+ LHG ++Q +RL ++N
Sbjct: 288 DVYLVHILNELAGNS---FMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALN 344
Query: 526 NFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFV 585
FK+ +LI TD+ASRGLDIP ++VV+NFD+P + Y+HRVGRTARAGR G+++T V
Sbjct: 345 KFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLV 404
Query: 586 GE 587
+
Sbjct: 405 SQ 406
>SPAC823.08c [A] KOG0330 ATP-dependent RNA helicase
Length = 465
Score = 251 bits (641), Expect = 3e-66
Identities = 140/353 (39%), Positives = 209/353 (58%), Gaps = 9/353 (2%)
Query: 233 KTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPII 292
KTF L + + + LG+ +P+PIQ AIP+ L +D+I A TGSGKTAAF +P+I
Sbjct: 46 KTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVI 105
Query: 293 ERLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQAL 352
+ L P+ + VVL PTRELA Q+++ + IG + G+ + VGG+++ Q AL
Sbjct: 106 QELWNNPSPFFA---VVLAPTRELAYQISEQFEAIGGSI-GVRSVVIVGGMDMVTQAVAL 161
Query: 353 KTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKR 412
+P +++ TPGR +DHL N+ FS+ +++ L++DEADR+L+ F + +I+ +IP +R
Sbjct: 162 SKKPHVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHER 221
Query: 413 QTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQL 472
+TLLFSATM PVR+ + D L Q ++ + K L L
Sbjct: 222 RTLLFSATMTSKVEKLQRASLHQPVRVAVSSKFSTVDTLIQRYLFFPFKH--KDTYLVYL 279
Query: 473 IRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQV 532
+ +L S I++F +L I+L LG LHG L+Q RL ++N FKS
Sbjct: 280 VNELAGNS---IIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGAR 336
Query: 533 PVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFV 585
L+ TD+A+RGLDIP ++VVIN+D+P + Y+HRVGRTARAGR G+S+ V
Sbjct: 337 STLVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALV 389
>YHR065c [A] KOG0330 ATP-dependent RNA helicase
Length = 543
Score = 244 bits (624), Expect = 3e-64
Identities = 141/356 (39%), Positives = 210/356 (58%), Gaps = 10/356 (2%)
Query: 233 KTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPII 292
++F+ L+L +++ +L Y+ P+PIQS AIP AL G DII A TGSGKTAAF IPI+
Sbjct: 123 ESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPIL 182
Query: 293 ERLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQAL 352
RL + + +L PTRELA Q+ + ++G + G+ VGG+N+ Q + L
Sbjct: 183 NRLWHDQEPYYAC---ILAPTRELAQQIKETFDSLGSLM-GVRSTCIVGGMNMMDQARDL 238
Query: 353 KTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSK- 411
+P I+IATPGR +DHL N+ FS+ ++ LV+DEADR+L+ F L I+ +IP++
Sbjct: 239 MRKPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQE 298
Query: 412 RQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQ 471
R T LFSATM PV+ + Q D L Q + + LK L
Sbjct: 299 RTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVP--GGLKNTYLIY 356
Query: 472 LIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQ 531
L+ + K +++F K A +L + LL LHG L Q QR+ S++ FK+ +
Sbjct: 357 LLNEFIG---KTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDLFKAGK 413
Query: 532 VPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGE 587
+L+ TD+A+RGLDIP +++V+N+D+P + Y+HRVGRTARAGR G+S++ V +
Sbjct: 414 RSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQ 469
>At5g60990 [A] KOG0330 ATP-dependent RNA helicase
Length = 454
Score = 241 bits (615), Expect = 3e-63
Identities = 149/370 (40%), Positives = 215/370 (57%), Gaps = 25/370 (6%)
Query: 231 VHKTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIP 290
V KTF L + ++K LG+ +PS IQ+ A+P AL GKD+I A TGSGKT AF IP
Sbjct: 7 VVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIP 66
Query: 291 IIERLLY-------------KPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFG 337
I++ LL PA A VL+PTRELAIQ+A+ + +G ++ L
Sbjct: 67 ILQALLEYVYDSEPKKGRRPDPAFFAC----VLSPTRELAIQIAEQFEALGADIS-LRCA 121
Query: 338 LAVGGLNLRQQEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGF 397
+ VGG++ QQ AL RP + ATPGR DH+ ++ FS+ S++ LV+DEADR+L E F
Sbjct: 122 VLVGGIDRMQQTIALGKRPHV--ATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDF 179
Query: 398 QEELQEIMSLIPSKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIR 457
++ L +I+ IP +R+T LFSATM PV+I D L Q++ R
Sbjct: 180 EKSLNQILEEIPLERKTFLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQY-R 238
Query: 458 IRKRDHLKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQ 517
+ L+Y L ++TS ++F + L +VL LG + + G +TQ
Sbjct: 239 FVAAKYKDCYLVYILSEMPESTS----MIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQ 294
Query: 518 EQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGR 577
+RL ++N FK+ + +L+CTD+ASRGLDIP ++VVIN+D+P + Y+HRVGRTARAGR
Sbjct: 295 SKRLGALNKFKAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGR 354
Query: 578 EGRSVTFVGE 587
G ++ V +
Sbjct: 355 SGVGISLVNQ 364
>Hs19923595 [A] KOG0337 ATP-dependent RNA helicase
Length = 882
Score = 241 bits (614), Expect = 4e-63
Identities = 147/353 (41%), Positives = 202/353 (56%), Gaps = 10/353 (2%)
Query: 235 FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 294
F S+ LS PV KG+ GY P+PIQ IP+ L GKD++A A TGSGKTA F++P+ ER
Sbjct: 98 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 157
Query: 295 LLYKPAHIAST--RVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQAL 352
L H A T R ++L+PTRELA+Q K +GKF GL L +GG + Q AL
Sbjct: 158 L---KTHSAQTGARALILSPTRELALQTLKFTKELGKFT-GLKTALILGGDRMEDQFAAL 213
Query: 353 KTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKR 412
PDI+IATPGR + H+ S + SVE +V DEADR+ E GF E+LQEI++ +P
Sbjct: 214 HENPDIIIATPGRLV-HVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGH 272
Query: 413 QTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQL 472
QT+LFSAT+ PV I +D + ++L F +R + K A+L L
Sbjct: 273 QTVLFSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFFLVR--EDTKAAVLLHL 330
Query: 473 IRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQV 532
+ + Q + VVFVA K A L +L + ++ +L R ++ F +
Sbjct: 331 LHNVVRP-QDQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKC 389
Query: 533 PVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFV 585
LI TDLA+RGLDIP ++ VIN+ P +++LHRVGR ARAGR G + + V
Sbjct: 390 STLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLV 442
>SPAC31A2.07c [A] KOG0337 ATP-dependent RNA helicase
Length = 848
Score = 235 bits (599), Expect = 2e-61
Identities = 141/383 (36%), Positives = 219/383 (56%), Gaps = 35/383 (9%)
Query: 235 FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 294
F S+ L++ +L+ + G+ +P+PIQ IP+ L G+D++ A TGSGKTAAF+IP+IE
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 295 LLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKT 354
L A+ ++TR ++L+P RELA+Q V K+ K + + + VGG++L +Q L
Sbjct: 131 LKSTLAN-SNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAI-VGGVSLEEQFSLLSG 188
Query: 355 RPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKRQT 414
+PDIV+ATPGRF+ HL+ + S+E +V DEADR+ E GF +L EI+ +P+ RQT
Sbjct: 189 KPDIVVATPGRFL-HLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILHALPTSRQT 247
Query: 415 LLFSATMNXXXXXXXXXXXXXPVRIMID-PPKQAADK------------------LTQEF 455
LLFSAT+ PV + +D K +AD + Q+
Sbjct: 248 LLFSATLPRTLVDFAKAGLQDPVLVRLDVESKVSADLQSAFFSVKTAEREAALLCILQDI 307
Query: 456 IRIRKRDHLKPA-------------LLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLG 502
I++ +D+++P L ++ ++ S +VFV K + +L
Sbjct: 308 IKLPLKDNVRPREIGNVNNPKKRKRALELALKGSESGSPDSTLVFVPTKHHVEYVSELLV 367
Query: 503 LLGMQVGELHGSLTQEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTY 562
G V +++GSL QE RL +NNF+ + +L+ TD+ASRG+DIP + VIN+D P
Sbjct: 368 QAGYSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTDVASRGIDIPLLANVINYDFPPQP 427
Query: 563 EIYLHRVGRTARAGREGRSVTFV 585
++++HRVGRTARAGR G + + V
Sbjct: 428 KVFVHRVGRTARAGRTGWAYSLV 450
>At1g16280 [A] KOG0340 ATP-dependent RNA helicase
Length = 491
Score = 234 bits (596), Expect = 5e-61
Identities = 143/393 (36%), Positives = 225/393 (56%), Gaps = 12/393 (3%)
Query: 235 FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 294
F L L+ ++ LG P+P+Q+ +P L G+D++ A TGSGKTAAF +PI+ R
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHR 119
Query: 295 LLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKT 354
L P + + +V+TPTRELA Q+A+ K +G +N L + VGG+++ Q +L +
Sbjct: 120 LAEDPYGVFA---LVVTPTRELAFQLAEQFKALGSCLN-LRCSVIVGGMDMLTQTMSLVS 175
Query: 355 RPDIVIATPGRFIDHLRNSASFS--VDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKR 412
RP IVI TPGR L N+ + LV+DEADR+L+ GFQ+EL+ I +P R
Sbjct: 176 RPHIVITTPGRIKVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLPKSR 235
Query: 413 QTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQL 472
QTLLFSATM + D LTQ+FI K K L +
Sbjct: 236 QTLLFSATMTSNLQALLEHSSNKAYFYEAYEGLKTVDTLTQQFIFEDK--DAKELYLVHI 293
Query: 473 IRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQV 532
+ ++++ + ++FV+ T +L ++L L ++ +H +Q RL +++ FKS +V
Sbjct: 294 LSQMEDKGIRSAMIFVSTCRTCQRLSLMLDELEVENIAMHSLNSQSMRLSALSKFKSGKV 353
Query: 533 PVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESSQDR 592
P+L+ TD+ASRGLDIP +++VIN+D+P+ Y+HRVGRTARAGR G +V+ + E+ D
Sbjct: 354 PILLATDVASRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIITET--DV 411
Query: 593 SIVRSAIRSVEENAE--SGKALSRNVDWTQVEQ 623
++ V + E + K ++ +++ T+V +
Sbjct: 412 KLIHKIEEEVGKKMEPYNKKVITDSLEVTKVSK 444
>YMR290c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 505
Score = 233 bits (595), Expect = 6e-61
Identities = 138/359 (38%), Positives = 218/359 (60%), Gaps = 16/359 (4%)
Query: 235 FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIE- 293
F L LS+P LK + +G+T+ + +Q+ IP L G+D++ A TGSGKT AF+IP IE
Sbjct: 44 FEELKLSQPTLKAIEKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEL 103
Query: 294 --RLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQA 351
L +KP + T ++V+TPTRELA+Q+ V + + +F + TFG+ +GG N RQ+ +
Sbjct: 104 LHSLKFKPRN--GTGIIVITPTRELALQIFGVARELMEF-HSQTFGIVIGGANRRQEAEK 160
Query: 352 LKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSK 411
L +++IATPGR +DHL+N+ F +++ L+IDEADR+LE GF++E+++I+ ++P++
Sbjct: 161 LMKGVNMLIATPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEDEMRQIIKILPNE 220
Query: 412 -RQTLLFSATMNXXXXXXXXXXXX-XPVRIMIDP--PKQAADKLTQEFIRIRKRDHLKPA 467
RQ++LFSAT P+ I + P AD L Q ++ D K
Sbjct: 221 DRQSMLFSATQTTKVEDLARISLRPGPLFINVVPETDNSTADGLEQGYVVC---DSDKRF 277
Query: 468 LLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNF 527
LL L L +K+I+VF++ + +L + + V ELHG Q++R + F
Sbjct: 278 LL--LFSFLKRNQKKKIIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEF 335
Query: 528 KSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGR-EGRSVTFV 585
+ + +LICTD+A+RGLDIP ++ +I FD P Y+HRVGRTAR + +G+S+ F+
Sbjct: 336 CNAERGILICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTKGKGKSLMFL 394
>ECU10g0440 [A] KOG0330 ATP-dependent RNA helicase
Length = 400
Score = 232 bits (592), Expect = 1e-60
Identities = 140/381 (36%), Positives = 208/381 (53%), Gaps = 12/381 (3%)
Query: 235 FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 294
F L + ++K G T P+ +Q IP L G D+IA + TGSGKT AF++PI+
Sbjct: 3 FGDLRIDESLIKTCQEKGITRPTEVQRQVIPAVLGGGDVIAVSQTGSGKTLAFVLPIVSH 62
Query: 295 LLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKT 354
LL K S +V+ PTREL+ Q+A+ GL L VGG N Q L
Sbjct: 63 LLQKNR---SFYCLVVAPTRELSSQIAECFNMFQ--ATGLRVCLLVGGANFNVQANQLSK 117
Query: 355 RPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKRQT 414
RP +V+ TPGR +H+ + SF + V V+DEADR E+ F E+L+ I+ + KRQT
Sbjct: 118 RPHVVVGTPGRIAEHVLKTKSFRTERVRKFVLDEADRFFEQDFVEDLETIIPSLREKRQT 177
Query: 415 LLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQLIR 474
LLF+ATM+ P I + L + ++ + + K + L +L+
Sbjct: 178 LLFTATMSDEISKLSSSILKRPKTIRTAEKYETVPALKEYYLFVAMK--WKNSALVELLE 235
Query: 475 KLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQVPV 534
S ++VFV+ TA + + L LG LHG L+QE+R +++ +FK + V
Sbjct: 236 MSQGMS---VIVFVSMCVTARVMSLALARLGFCSEALHGELSQEKREEAMRSFKESRFNV 292
Query: 535 LICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESSQDRSI 594
L+CTDL SRGLDI +++VINFD+PK+ + Y+HRVGRTARAGR G ++T V + D
Sbjct: 293 LVCTDLGSRGLDISHVDLVINFDVPKSGKDYIHRVGRTARAGRSGTAITLV--TQYDVEQ 350
Query: 595 VRSAIRSVEENAESGKALSRN 615
++ ++E+ E K + +N
Sbjct: 351 IQKIEFTLEKKLEEFKMMKKN 371
>SPAC1F7.02c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 578
Score = 223 bits (569), Expect = 6e-58
Identities = 132/362 (36%), Positives = 215/362 (58%), Gaps = 16/362 (4%)
Query: 235 FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 294
F+ L LS + K + +G+ + + IQ +IP L G+D++ A TGSGKT AF+IP IE
Sbjct: 91 FSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEM 150
Query: 295 LL---YKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQA 351
L +KP + T V++++PTRELA+Q+ V K + K+ + TFG+ +GG N R +
Sbjct: 151 LYALKFKPRN--GTGVIIISPTRELALQIFGVAKELLKY-HHQTFGIVIGGANRRAEADK 207
Query: 352 LKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSK 411
L ++++ATPGR +DHL+N+ F ++ LVIDEADR+LE GF++E+++IM ++PS+
Sbjct: 208 LVKGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKILPSE 267
Query: 412 -RQTLLFSATMNXXXXXXXXXXXX-XPVRIMID--PPKQAADKLTQEFIRIRKRDHLKPA 467
RQTLLFSAT P+ + +D P + L Q ++ + D K
Sbjct: 268 NRQTLLFSATQTTKVEDLARISLKPGPLYVNVDSGKPTSTVEGLEQGYVVV---DSDKRF 324
Query: 468 LLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNF 527
LL L L +K+++VF++ + + +L + + V +LHG Q++R + F
Sbjct: 325 LL--LFSFLKRNLKKKVIVFMSSCASVKYMAELLNYIDLPVLDLHGKQKQQRRTNTFFEF 382
Query: 528 KSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGR-EGRSVTFVG 586
+ + +L+CT++A+RGLDIP ++ ++ +D P Y+HRVGRTAR + G+S+ F+
Sbjct: 383 CNAEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIHRVGRTARGTKGTGKSLMFLA 442
Query: 587 ES 588
S
Sbjct: 443 PS 444
>7291960_2 [A] KOG0337 ATP-dependent RNA helicase
Length = 883
Score = 223 bits (568), Expect = 8e-58
Identities = 131/359 (36%), Positives = 200/359 (55%), Gaps = 6/359 (1%)
Query: 227 AKKIVHKTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAA 286
+KK F S+ L ++KG+ GY P+PIQ IP+ L G+D++A A TGSGKTA
Sbjct: 89 SKKNKSGGFQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTAC 148
Query: 287 FMIPIIERLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLR 346
F+IP+ E+L + R ++L+PTRELA+Q K +G+F+ L L +GG ++
Sbjct: 149 FLIPLFEKLQRREP-TKGARALILSPTRELAVQTYKFIKELGRFME-LKSILVLGGDSMD 206
Query: 347 QQEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMS 406
Q A+ T PD+++ATPGRF+ HL ++S+E +V DEADR+ E GF E+L E +
Sbjct: 207 SQFSAIHTCPDVIVATPGRFL-HLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLH 265
Query: 407 LIPSKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKP 466
+PS RQT++FSAT+ PV I +D + D L +F+ R D
Sbjct: 266 RLPSSRQTVMFSATLPKLLVEFARAGLNDPVLIRLDVESKLPDALALKFLYCRPDDRYTA 325
Query: 467 ALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNN 526
++ + K Q + VVF + + +L G+ ++ SL R +
Sbjct: 326 LVV---LLKYVIPVQSQTVVFAGTQHHVELISYILTEAGISNASVYSSLDPAARKINTAK 382
Query: 527 FKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFV 585
F + +V VLI TD+A+RG+DIP ++ V+N P ++++HRVGR ARAGR G + + V
Sbjct: 383 FVNKKVSVLIVTDVAARGIDIPSLDFVVNLHFPGKPKLFVHRVGRCARAGRTGTAYSIV 441
>SPBC543.06c [A] KOG0340 ATP-dependent RNA helicase
Length = 453
Score = 223 bits (567), Expect = 1e-57
Identities = 137/367 (37%), Positives = 213/367 (57%), Gaps = 13/367 (3%)
Query: 233 KTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPII 292
K+F+ L +S ++ L +L P+ IQ I L G++ I GA TGSGKTAAF +PII
Sbjct: 7 KSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPII 66
Query: 293 ERLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQAL 352
E+ P+ I + ++LTPTRELAIQ+ + +G +N L L VGG+++ +Q L
Sbjct: 67 EKWSKDPSGIFA---LILTPTRELAIQIDEQFAALGANLN-LKHALIVGGMDMIRQSIDL 122
Query: 353 KTRPDIVIATPGRFIDHLRNSASFSVDS---VEILVIDEADRMLEEGFQEELQEIMSLIP 409
RP +V+ATPGR D +R++ ++ ++ LV+DEADR+L F ++L + S++P
Sbjct: 123 SKRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVLP 182
Query: 410 SK--RQTLLFSATMNXXXXXXX---XXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHL 464
+ RQTLLF+AT+ P+ + + T + I +
Sbjct: 183 ASEDRQTLLFTATVTDAIRQLKYQPQKNNKPPLWLYEVETDNISVPSTLQQSYIFVSSQV 242
Query: 465 KPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSV 524
+ A L L+ +N ++K ++FV R TA + +L LL ++V ELH + Q +R+ S+
Sbjct: 243 REAYLVHLLTIPEN-AKKSAIIFVNRTRTAELIYSILRLLELRVTELHSEMVQRERINSL 301
Query: 525 NNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTF 584
F++ +L+ TD+ASRGLDIP +++VINFD+P+ + Y+HRVGRTARAGR G S++
Sbjct: 302 GRFRAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISI 361
Query: 585 VGESSQD 591
V E D
Sbjct: 362 VTERDVD 368
>At3g18600 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 568
Score = 220 bits (561), Expect = 5e-57
Identities = 135/387 (34%), Positives = 221/387 (56%), Gaps = 15/387 (3%)
Query: 234 TFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 293
TF+SL LS + +G+ + IQ+ +I L GKD++ A TGSGKT AF+IP +E
Sbjct: 90 TFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVE 149
Query: 294 RLL---YKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQ 350
L + P + T V+V+ PTRELAIQ +V + + K + T + +GG N R + Q
Sbjct: 150 LLFKERFSPRN--GTGVIVICPTRELAIQTKNVAEELLKH-HSQTVSMVIGGNNRRSEAQ 206
Query: 351 ALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPS 410
+ + ++VIATPGR +DHL+N+ +F ++ LVIDEADR+LEE F+E++ +I+ ++P
Sbjct: 207 RIASGSNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFEEDMNKILKILPK 266
Query: 411 KRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAA--DKLTQEFIRIRKRDHLKPAL 468
RQT LFSAT PV + +D ++ + L Q + + + L L
Sbjct: 267 TRQTALFSATQTSKVKDLARVSLTSPVHVDVDDGRRKVTNEGLEQGYCVVPSKQRL--IL 324
Query: 469 LYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFK 528
L ++K N K+I+VF + ++ ++ + + V ++HG + Q +R ++ +F
Sbjct: 325 LISFLKKNLN---KKIMVFFSTCKSVQFHTEIMKISDVDVSDIHGGMDQNRRTKTFFDFM 381
Query: 529 SLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARA-GREGRS-VTFVG 586
+ +L+CTD+A+RGLDIP ++ +I +D P Y+HRVGRTAR G +G++ + +
Sbjct: 382 KAKKGILLCTDVAARGLDIPSVDWIIQYDPPDKPTEYIHRVGRTARGEGAKGKALLVLIP 441
Query: 587 ESSQDRSIVRSAIRSVEENAESGKALS 613
E Q +++A V+E + K LS
Sbjct: 442 EELQFIRYLKAAKVPVKELEFNEKRLS 468
>YDL031w [A] KOG0337 ATP-dependent RNA helicase
Length = 995
Score = 219 bits (559), Expect = 9e-57
Identities = 140/414 (33%), Positives = 221/414 (52%), Gaps = 57/414 (13%)
Query: 228 KKIVHK--TFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTA 285
+K HK +F S LS+ VL + G+ P+PIQ IP+ L +DI+ A TGSGKTA
Sbjct: 130 EKTKHKKGSFPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLILQSRDIVGMARTGSGKTA 189
Query: 286 AFMIPIIERLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNL 345
AF++P++E+L I + R V+L+P+RELA+Q +V K+ + L L GG +L
Sbjct: 190 AFILPMVEKLKSHSGKIGA-RAVILSPSRELAMQTFNVFKDFARGTE-LRSVLLTGGDSL 247
Query: 346 RQQEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIM 405
+Q + T PD++IATPGRF+ HL+ + + SVE +V DEADR+ E GFQE+L E++
Sbjct: 248 EEQFGMMMTNPDVIIATPGRFL-HLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELL 306
Query: 406 SLIPSKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLK 465
+ +P+ RQTLLFSAT+ PV + +D + ++ L F+ + D +
Sbjct: 307 ASLPTTRQTLLFSATLPNSLVDFVKAGLVNPVLVRLDAETKVSENLEMLFLSSKNADR-E 365
Query: 466 PALLYQL-------------IRKLDNT--------------------------------- 479
LLY L ++KL N+
Sbjct: 366 ANLLYILQEIIKIPLATSEQLQKLQNSNNEADSDSDDENDRQKKRRNFKKEKFRKQKMPA 425
Query: 480 -----SQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQVPV 534
S+K ++FV + + +L G + ++G+L Q R + + NF++ +
Sbjct: 426 ANELPSEKATILFVPTRHHVEYISQLLRDCGYLISYIYGTLDQHARKRQLYNFRAGLTSI 485
Query: 535 LICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGES 588
L+ TD+A+RG+DIP + VIN+ +P + +I++HRVGRTARAG +G + + V E+
Sbjct: 486 LVVTDVAARGVDIPMLANVINYTLPGSSKIFVHRVGRTARAGNKGWAYSIVAEN 539
>At1g77050 [A] KOG0337 ATP-dependent RNA helicase
Length = 513
Score = 219 bits (558), Expect = 1e-56
Identities = 130/353 (36%), Positives = 203/353 (56%), Gaps = 9/353 (2%)
Query: 235 FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 294
F SL+L V + GY P+PIQ +P+ L G D++A A TGSGKTAAF+IP++E+
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89
Query: 295 LLYKPAHI--ASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQAL 352
L H+ R ++L+PTR+LA Q K +GKF + L L VGG ++ Q + L
Sbjct: 90 L---KQHVPQGGVRALILSPTRDLAEQTLKFTKELGKFTD-LRVSLLVGGDSMEDQFEEL 145
Query: 353 KTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKR 412
PD++IATPGR + L ++ +VE +V DEAD + GF E+L +I++ + R
Sbjct: 146 TKGPDVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQILTQLSENR 205
Query: 413 QTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQL 472
QTLLFSAT+ P + +D + + L F+ +R + ALLY L
Sbjct: 206 QTLLFSATLPSALAEFAKAGLREPQLVRLDVENKISPDLKLSFLTVRPEEKYS-ALLY-L 263
Query: 473 IRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQV 532
+R+ ++ Q+ ++ FV+ K + + L ++ +G + Q+ R V+ F++ +
Sbjct: 264 VREHISSDQQTLI-FVSTKHHVEFVNSLFKLENIEPSVCYGDMDQDARKIHVSRFRARKT 322
Query: 533 PVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFV 585
+LI TD+A+RG+DIP ++ VIN+D P +I++HRVGR ARAGR G + +FV
Sbjct: 323 MLLIVTDIAARGIDIPLLDNVINWDFPPRPKIFVHRVGRAARAGRTGCAYSFV 375
>SPBC17D1.06 [A] KOG0331 ATP-dependent RNA helicase
Length = 578
Score = 219 bits (557), Expect = 2e-56
Identities = 141/368 (38%), Positives = 210/368 (56%), Gaps = 19/368 (5%)
Query: 235 FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 294
F+ L +S + +GL + Y P+PIQ+A P L G+D++ A TGSGKT AF IP ++
Sbjct: 169 FDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQY 226
Query: 295 LLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAV--GGLNLRQQEQAL 352
L + + RV+V++PTRELAIQ + N+ + G V GG +Q +A
Sbjct: 227 LNGLSDNKSVPRVLVVSPTRELAIQTYE---NLNSLIQGTNLKAVVVYGGAPKSEQARAA 283
Query: 353 KTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPS-- 410
K ++I TPGR +D L N S V LV+DEADRML+ GF+++++ I+S P
Sbjct: 284 KNA-SVIIGTPGRLLD-LINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPT 341
Query: 411 ---KRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPA 467
RQT+ FSAT PV+I I + AA + + + I K
Sbjct: 342 RNGSRQTVFFSATWPESVRALAATFLKDPVKITIGSDELAASQNITQIVEILDDPRSKER 401
Query: 468 LLYQLIRKLDNTSQK--RIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVN 525
+L L+RK ++ K +I++FV K+ A ++ L VG +HG ++Q RLQ++N
Sbjct: 402 MLDNLLRKHLSSGGKDDKILIFVLYKKEAARVEGTLARKYNVVG-IHGDMSQGARLQALN 460
Query: 526 NFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFV 585
+FKS + PVL+ TD+A+RGLDIPK+++VIN P T E Y+HR+GRT RA +G ++TF
Sbjct: 461 DFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHRIGRTGRANTKGTAITFF 520
Query: 586 GESSQDRS 593
+ QD+S
Sbjct: 521 --TPQDKS 526
>YHR169w [A] KOG0340 ATP-dependent RNA helicase
Length = 431
Score = 218 bits (556), Expect = 2e-56
Identities = 139/371 (37%), Positives = 209/371 (55%), Gaps = 22/371 (5%)
Query: 235 FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 294
F SL LS+ + + L ++ T P+ IQ A IP L G+D I GA TGSGKT AF P++ +
Sbjct: 4 FKSLGLSKWLTESLRAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPMLTK 63
Query: 295 LLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKT 354
P+ + VVLTPTRELA+Q+A+ +G +N + + VGG ++ QQ L+
Sbjct: 64 WSEDPSGMFG---VVLTPTRELAMQIAEQFTALGSSMN-IRVSVIVGGESIVQQALDLQR 119
Query: 355 RPDIVIATPGRFIDHLRNSASFSVDSV---EILVIDEADRMLEEGFQEELQEIMSLIP-- 409
+P +IATPGR H+ +S +V + + LV+DEAD +L F + L +S +P
Sbjct: 120 KPHFIIATPGRLAHHIMSSGDDTVGGLMRAKYLVLDEADILLTSTFADHLATCISALPPK 179
Query: 410 SKRQTLLFSATMNXXXXXXXXXXXXXPVR--------IMIDPPKQAADKLTQEFIRIRKR 461
KRQTLLF+AT+ PV+ ++ A T + I
Sbjct: 180 DKRQTLLFTATITDQVKSLQNA----PVQKGKPPLFAYQVESVDNVAIPSTLKIEYILVP 235
Query: 462 DHLKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRL 521
+H+K A LYQL+ + K ++FV R TA LR L L ++V LH + Q++R
Sbjct: 236 EHVKEAYLYQLLT-CEEYENKTAIIFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQERT 294
Query: 522 QSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRS 581
S++ F++ +LI TD+ASRGLDIP +E+V+N+D+P ++++HR GRTARAGR G +
Sbjct: 295 NSLHRFRANAARILIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDA 354
Query: 582 VTFVGESSQDR 592
++FV + R
Sbjct: 355 ISFVTQRDVSR 365
>7303950 [A] KOG0340 ATP-dependent RNA helicase
Length = 521
Score = 214 bits (546), Expect = 3e-55
Identities = 137/354 (38%), Positives = 198/354 (55%), Gaps = 14/354 (3%)
Query: 235 FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 294
F L L ++K L LG +PIQ IP L G+D I A TGSGKT AF +PI+ER
Sbjct: 9 FQILGLRPWLVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILER 68
Query: 295 LLYKP-AHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALK 353
L +P +H A +VLTPT ELA Q+++ G+ + G+ + GG + + Q L
Sbjct: 69 LSEEPVSHFA----LVLTPTHELAYQISEQFLVAGQAM-GVRVCVVSGGTDQMVESQKLM 123
Query: 354 TRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKRQ 413
RP IV+A PGR DHL +FS D+++ LV+DEADRML F E L I +P RQ
Sbjct: 124 QRPHIVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLSIIERCLPKTRQ 183
Query: 414 TLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRK---RDHLKPALLY 470
L FSATM P+ Q +D T E + R D+ + +L
Sbjct: 184 NLFFSATMKDFIKESSIF----PIASDCFEWSQDSDVATVETLDQRYLLCADYDRDMVLI 239
Query: 471 QLIRKL-DNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKS 529
+ +RK + +++F K+ L + L + + LHG + Q++R+ +++ FKS
Sbjct: 240 EALRKYREENENANVMIFTNTKKYCQLLSMTLKNMEIDNVCLHGFMRQKERVAALSRFKS 299
Query: 530 LQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVT 583
Q+ LI TD+A+RGLDIP +E+V+N +P+T + Y+HRVGRTARAGR+G S++
Sbjct: 300 NQIRTLIATDVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRTARAGRKGMSIS 353
>Hs11321632 [A] KOG0339 ATP-dependent RNA helicase
Length = 709
Score = 212 bits (540), Expect = 1e-54
Identities = 131/356 (36%), Positives = 205/356 (56%), Gaps = 15/356 (4%)
Query: 253 YTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLL----YKPAHIASTRVV 308
YT P+PIQ +P+AL G+D+I A TGSGKTAAF+ P++ ++ +P V
Sbjct: 154 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGD--GPIAV 211
Query: 309 VLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKTRPDIVIATPGRFID 368
++ PTREL Q+ K GK N L GG ++ +Q +AL+ +IV+ TPGR ID
Sbjct: 212 IVCPTRELCQQIHAECKRFGKAYN-LRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLID 270
Query: 369 HLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKRQTLLFSATMNXXXXXX 428
H++ A+ ++ V LV DEADRM + GF+ +++ I S + RQTLLFSAT
Sbjct: 271 HVKKKAT-NLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKL 329
Query: 429 XXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQLIRKL-DNTSQKRIVVF 487
P+R++ +A + +TQ I + H P+ L R+L + TS +++F
Sbjct: 330 ARDILIDPIRVVQGDIGEANEDVTQ----IVEILHSGPSKWNWLTRRLVEFTSSGSVLLF 385
Query: 488 VARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQVPVLICTDLASRGLDI 547
V +K A +L L G +G LHG + Q +R + +++FK +PVL+ TD+A+RGLDI
Sbjct: 386 VTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDI 445
Query: 548 PKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESSQDRSIVRSAIRSVE 603
P I+ VIN+D+ + + + HR+GRT RAG +G + T + + +D + +R++E
Sbjct: 446 PSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL--TPKDSNFAGDLVRNLE 499
>7298204 [A] KOG0335 ATP-dependent RNA helicase
Length = 661
Score = 211 bits (536), Expect = 4e-54
Identities = 132/379 (34%), Positives = 206/379 (53%), Gaps = 15/379 (3%)
Query: 235 FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 294
F S L ++ + GY P+PIQ +IP+ G+D++A A TGSGKTAAF++PI+ +
Sbjct: 247 FTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSK 306
Query: 295 LLYKPAHIASTR--VVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQAL 352
LL P + R VV+++PTRELAIQ+ + + F + L G+ GG + R Q + +
Sbjct: 307 LLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFA-FESYLKIGIVYGGTSFRHQNECI 365
Query: 353 KTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSK- 411
+VIATPGR +D + + + + +V+DEADRML+ GF E+++ IM+ + +
Sbjct: 366 TRGCHVVIATPGRLLDFV-DRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRP 424
Query: 412 -RQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLY 470
QTL+FSAT V + I A + Q + K + K + L
Sbjct: 425 EHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNK--YAKRSKLI 482
Query: 471 QLI-RKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKS 529
+++ + D T +VFV K A L L +HG Q QR Q++ +FK+
Sbjct: 483 EILSEQADGT-----IVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKN 537
Query: 530 LQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESS 589
+ VLI T +ASRGLDI I+ VIN+DMP + Y+HR+GRT R G GR+ +F +
Sbjct: 538 GSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFF-DPE 596
Query: 590 QDRSIVRSAIRSVEENAES 608
+DR+I ++ +E + ++
Sbjct: 597 KDRAIAADLVKILEGSGQT 615
>At2g47330 [A] KOG0339 ATP-dependent RNA helicase
Length = 748
Score = 209 bits (532), Expect = 1e-53
Identities = 131/356 (36%), Positives = 194/356 (53%), Gaps = 8/356 (2%)
Query: 233 KTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPII 292
KTF S ++ + Y P+ IQ A+PI L G+D+I A TGSGKTAAF++P+I
Sbjct: 228 KTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMI 287
Query: 293 ERLLYKPA--HIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQ 350
++ +P V+ PTRELA Q+ K K GL GG++ +Q +
Sbjct: 288 VHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSK-AYGLRVSAVYGGMSKHEQFK 346
Query: 351 ALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPS 410
LK +IV+ATPGR ID L+ A ++ LV+DEADRM + GF+ +++ I+ I
Sbjct: 347 ELKAGCEIVVATPGRLIDMLKMKA-LTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRP 405
Query: 411 KRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLY 470
RQTLLFSATM P+R+ + A + +TQ I P LL
Sbjct: 406 DRQTLLFSATMPWKVEKLAREILSDPIRVTVGEVGMANEDITQVVNVIPSDAEKLPWLLE 465
Query: 471 QLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSL 530
+L +D ++VF ++K T ++ L L +V LHG Q R++++ FKS
Sbjct: 466 KLPGMIDEGD---VLVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSG 522
Query: 531 QVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAG-REGRSVTFV 585
VLI TD+A+RGLDI ++ V+N+D+ K ++++HR+GRT RAG R+G + T V
Sbjct: 523 VHHVLIATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLV 578
>CE27553 [A] KOG0337 ATP-dependent RNA helicase
Length = 853
Score = 208 bits (530), Expect = 2e-53
Identities = 128/377 (33%), Positives = 201/377 (52%), Gaps = 31/377 (8%)
Query: 235 FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 294
+ + L V K + G+ P+PIQ IP + GKD++A + TGSGKTAAF+IP++++
Sbjct: 26 WQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPMLQK 85
Query: 295 LLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKT 354
L K R ++++PTRELA+Q V K +G+F GL VGG + +Q +
Sbjct: 86 L--KRRDTTGIRALMVSPTRELALQTFKVVKELGRFT-GLRCACLVGGDQIEEQFSTIHE 142
Query: 355 RPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKRQT 414
PDI++ATPGR + H+ + V+ +V DEADR+ E GFQ++L E + IP RQT
Sbjct: 143 NPDILLATPGRLL-HVIVEMDLRLSYVQYVVFDEADRLFEMGFQDQLTETLKRIPESRQT 201
Query: 415 LLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQL-- 472
LLFSAT+ P+ + +D ++ +DKL+ F R + L ALL+
Sbjct: 202 LLFSATLPKMLVDFAKAGLTDPMLVRLDVDEKVSDKLSMVFCMCRPDEKLF-ALLHLCRN 260
Query: 473 --IRKLDNTSQKRIVVFVARKETAHKLRI-------------------VLGLL---GMQV 508
+KL TS K+ + + K+R+ V+G+L G+
Sbjct: 261 FCFKKLLETSLKKCKISKKKVPLLKKVRMDRENKQTVVFCATMKHVEYVVGILHRAGIDC 320
Query: 509 GELHGSLTQEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHR 568
++ L R ++ F Q +L+ TD+A+RG+DIP ++ VIN P ++++HR
Sbjct: 321 SFVYSQLDATARKMNIQKFHEKQNNILVVTDVAARGVDIPLLDTVINLHFPPKAKLFVHR 380
Query: 569 VGRTARAGREGRSVTFV 585
VGR ARAGR G +++ +
Sbjct: 381 VGRVARAGRSGTAISLI 397
>ECU10g1680 [A] KOG0343 RNA Helicase
Length = 452
Score = 208 bits (529), Expect = 3e-53
Identities = 144/402 (35%), Positives = 212/402 (51%), Gaps = 18/402 (4%)
Query: 235 FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 294
F L + + + KGL G+ S +Q IP+AL G DII + TG+GKT AF++P ++R
Sbjct: 6 FEDLKIDQRIEKGLRENGFVSMKEVQQKVIPMALEGHDIIGSSQTGTGKTLAFLVPTLQR 65
Query: 295 LLYKP-AHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALK 353
L+ +V+TPTRELA+Q+ DV I K+ L+ GL +GGL +++ LK
Sbjct: 66 LVSLGWGGGDGLGCLVITPTRELALQIFDVLSRIAKYTV-LSTGLIMGGLEA--EDELLK 122
Query: 354 TRP-DIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKR 412
+I++ TPGR + HL+ + S +V+IL++DEAD+M+E GF+E L++I+ IP K+
Sbjct: 123 VNQMNILVCTPGRLLQHLQENPYLSTANVQILILDEADKMIEMGFKEVLEDILEYIPQKK 182
Query: 413 QTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQL 472
QTLLFSAT P I I + +L Q F +R D + L+
Sbjct: 183 QTLLFSATPKASTARILKLED--PRIISIYKEEGFPSQLRQYFYMMRTGDKIN--YLHTF 238
Query: 473 IRKLDNTSQKRIVVFVARKETA-HKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQ 531
I N K IV F KE H L L ++ L G ++Q+QR+ F +
Sbjct: 239 IGS--NPEVKGIVFFSTCKEVKFHCLLFERLKLRNRIFCLSGGMSQKQRIDVFKRFVKEK 296
Query: 532 VPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFV--GESS 589
+L CTDL SRGLD PK++VVI +D P E Y+HRVGRTAR G S ++ GE
Sbjct: 297 NGILFCTDLGSRGLDFPKVDVVIQYDCPCNVETYVHRVGRTARNSERGESYVYLVHGEEK 356
Query: 590 QDRSIVRSAIRSVEENAESGKALSRNV---DWTQVEQVNSLI 628
I + +E E K +S + Q+ +N+++
Sbjct: 357 LLTDIQKKGWIKKQEGMED-KGISEEITEGPGVQIRCINNMV 397
>At2g42520 [A] KOG0335 ATP-dependent RNA helicase
Length = 633
Score = 207 bits (528), Expect = 4e-53
Identities = 143/397 (36%), Positives = 209/397 (52%), Gaps = 22/397 (5%)
Query: 234 TFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 293
TF + L + + Y P+P+Q AIPI L G+D++A A TGSGKTAAF PII
Sbjct: 160 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIIS 219
Query: 294 RLLYKPAHIASTR--------VVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNL 345
++ K H+ R V+L+PTRELA Q+ D K + G+ +A GG +
Sbjct: 220 GIM-KDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFS-YQTGVKVVVAYGGTPI 277
Query: 346 RQQEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEI- 404
QQ + L+ DI++ATPGR D L A S+ + L +DEADRML+ GF+ ++++I
Sbjct: 278 NQQLRELERGVDILVATPGRLNDLLER-ARVSMQMIRFLALDEADRMLDMGFEPQIRKIV 336
Query: 405 --MSLIP-SKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQ--EFIRIR 459
M + P RQTLLFSAT + + + + D + Q EF+
Sbjct: 337 EQMDMPPRGVRQTLLFSATFPREIQRLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLDS 396
Query: 460 -KRDHLKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQE 518
KR HL L Q + Q +VFV K A L L + G +HG TQ+
Sbjct: 397 DKRSHLMDLLHAQRENGIQG-KQALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQ 455
Query: 519 QRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGRE 578
+R ++ FKS + P+L+ TD+A+RGLDIP + V+NFD+P + Y+HR+GRT RAG+
Sbjct: 456 EREVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKS 515
Query: 579 GRSVTFVGESSQDRSIVRSAIRSVEE-NAESGKALSR 614
G + F + + S+ R ++E N E + L+R
Sbjct: 516 GLATAFFNDG--NTSLARPLAELMQEANQEVPEWLTR 550
>At5g65900 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 633
Score = 207 bits (526), Expect = 6e-53
Identities = 122/358 (34%), Positives = 205/358 (57%), Gaps = 11/358 (3%)
Query: 230 IVHKTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMI 289
+ +KTF SLSLS K + +G+ + IQ+ AIP ++G+D++ A TGSGKT AF+I
Sbjct: 151 MTNKTFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLI 210
Query: 290 PIIERLLYKPAHIA--STRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQ 347
P +E LLY+ T V+V+ PTRELAIQ V K + K+ + T G +GG +
Sbjct: 211 PAVE-LLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKY-HSQTVGKVIGGEKRKT 268
Query: 348 QEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSL 407
+ + L ++++ATPGR +DHL N+ F +++ LV+DEADR+LE+ F+E+L++I++L
Sbjct: 269 EAEILAKGVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNL 328
Query: 408 IPSKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAA--DKLTQEFIRIRKRDHLK 465
+P RQT LFSAT + PV I +D ++ + L Q + + ++
Sbjct: 329 LPKTRQTSLFSATQSAKVEDLARVSLTSPVYIDVDEGRKEVTNEGLEQGYCVVPSA--MR 386
Query: 466 PALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVN 525
L +++ +K+I+VF + ++ + + E+ G + Q +R +
Sbjct: 387 LLFLLTFLKRFQ--GKKKIMVFFSTCKSTKFHAELFRYIKFDCLEIRGGIDQNKRTPTFL 444
Query: 526 NFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARA-GREGRSV 582
F + +L+CT++A+RGLD P ++ ++ +D P Y+HRVGRTAR G +G+++
Sbjct: 445 QFIKAETGILLCTNVAARGLDFPHVDWIVQYDPPDNPTDYIHRVGRTARGEGAKGKAL 502
>At5g51280 [A] KOG0341 DEAD-box protein abstrakt
Length = 591
Score = 206 bits (525), Expect = 8e-53
Identities = 127/376 (33%), Positives = 202/376 (52%), Gaps = 23/376 (6%)
Query: 233 KTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPII 292
K F + RPVL L G P+PIQ +P+ L G+D+I A TGSGKT F++P+I
Sbjct: 146 KNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMI 205
Query: 293 -----ERLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFG--------LA 339
E ++ A +++ P+RELA Q +V + +FV L L
Sbjct: 206 MIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEV---VEQFVAPLVEAGYPPLRSLLC 262
Query: 340 VGGLNLRQQEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQE 399
+GG+++R Q + +K IV+ATPGR D L S+D+ L +DEADR+++ GF++
Sbjct: 263 IGGIDMRSQLEVVKRGVHIVVATPGRLKDMLAKK-KMSLDACRYLTLDEADRLVDLGFED 321
Query: 400 ELQEIMSLIPSKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIR 459
+++E+ S+RQTLLFSATM PV + + A + QE ++
Sbjct: 322 DIREVFDHFKSQRQTLLFSATMPTKIQIFARSALVKPVTVNVGRAGAANLDVIQEVEYVK 381
Query: 460 KRDHLKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQ 519
+ A + L+ L TS +++F K + L L G++ +HG QE
Sbjct: 382 QE-----AKIVYLLECLQKTSPP-VLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQED 435
Query: 520 RLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREG 579
R ++++FK+ + VL+ TD+AS+GLD P I+ VIN+DMP E Y+HR+GRT R G+ G
Sbjct: 436 REYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTG 495
Query: 580 RSVTFVGESSQDRSIV 595
+ TF+ ++ + +++
Sbjct: 496 IATTFINKNQSETTLL 511
>Hs4758140 [A] KOG0326 ATP-dependent RNA helicase
Length = 472
Score = 206 bits (524), Expect = 1e-52
Identities = 129/395 (32%), Positives = 205/395 (51%), Gaps = 17/395 (4%)
Query: 224 SADAKKIVHKTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGK 283
++D F L R +L G+ +G+ PSPIQ +IPIAL G+DI+A A G+GK
Sbjct: 76 TSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGK 135
Query: 284 TAAFMIPIIERLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGL 343
+ A++IP++ERL K +I + +V+ PTRELA+QV+ + + K + G GG
Sbjct: 136 SGAYLIPLLERLDLKKDNI---QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGT 192
Query: 344 NLRQQEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQE 403
NLR L +VIATPGR +D ++ + VD V+++V+DEAD++L + F + +++
Sbjct: 193 NLRDDIMRLDDTVHVVIATPGRILDLIKKGVA-KVDHVQMIVLDEADKLLSQDFVQIMED 251
Query: 404 IMSLIPSKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDH 463
I+ +P RQ LL+SAT P I + + +TQ + + +R
Sbjct: 252 IILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINL-MEELTLKGVTQYYAYVTERQ- 309
Query: 464 LKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQS 523
K L L +L ++F + L + LG +H + QE R +
Sbjct: 310 -KVHCLNTLFSRLQINQS---IIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRV 365
Query: 524 VNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVT 583
++F++ L+CTDL +RG+DI + VVINFD PK E YLHR+GR+ R G G ++
Sbjct: 366 FHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAIN 425
Query: 584 FVGESSQDRSIVRSAIRSVEENAESG-KALSRNVD 617
+ R ++S+EE + K + N+D
Sbjct: 426 LITYDD------RFNLKSIEEQLGTEIKPIPSNID 454
>SPCC63.11 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 662
Score = 206 bits (523), Expect = 1e-52
Identities = 134/385 (34%), Positives = 197/385 (50%), Gaps = 33/385 (8%)
Query: 233 KTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPII 292
+ + L +LK L + Y PS IQ AAIP+ L KD+I A TGSGKTAAF+IP+I
Sbjct: 249 RNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLI 308
Query: 293 ERLLYKPAHIASTR-----VVVLTPTRELAIQVADVGKNIGKFVNGLTFGLA--VGGLNL 345
+ P S VVL PTRELA Q+ G KF L F VGG
Sbjct: 309 IAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGN---KFAEPLGFRCVSVVGGHAF 365
Query: 346 RQQEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIM 405
+Q + IV+ATPGR +D L F + +V+DEADRML+ GF++++ +I+
Sbjct: 366 EEQSFQMSQGAHIVVATPGRLLDCLERRL-FVLSQCTYVVMDEADRMLDMGFEDDVNKIL 424
Query: 406 SLIPS-------------------KRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQ 446
S +PS +RQT++FSAT+ PV + I Q
Sbjct: 425 SSLPSSNASEKDGSILATANSSSSRRQTIMFSATLPPRVANLAKSYLIEPVMLTIGNIGQ 484
Query: 447 AADKLTQEFIRIRKRDHLKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGM 506
A D++ Q + + D K + +++ N I++FV K + L +G
Sbjct: 485 AVDRVEQR-VEMISDDSKKWRRVEEILES--NRFSPPIIIFVNLKRNIEAIAKQLNAIGW 541
Query: 507 QVGELHGSLTQEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYL 566
LHGS +QEQR +++ ++ +L+ TD+A RG+DIP + +V+N++M K+ E Y
Sbjct: 542 HAVTLHGSKSQEQRERAIEQLRNKTADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYT 601
Query: 567 HRVGRTARAGREGRSVTFVGESSQD 591
HR+GRT RAG+ G ++TF+G D
Sbjct: 602 HRIGRTGRAGKSGTAITFLGPEDTD 626
>At3g58570 [A] KOG0335 ATP-dependent RNA helicase
Length = 646
Score = 205 bits (521), Expect = 2e-52
Identities = 132/372 (35%), Positives = 201/372 (53%), Gaps = 21/372 (5%)
Query: 234 TFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 293
TF + L + + Y P+P+Q AIPI G+D++A A TGSGKTAAF PII
Sbjct: 147 TFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIIS 206
Query: 294 RLLYKPAHIASTR--------VVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNL 345
++ K HI R V+L+PTRELA Q+ D + + G+ +A GG +
Sbjct: 207 GIM-KDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFS-YQTGVKVVVAYGGTPV 264
Query: 346 RQQEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIM 405
QQ + L+ DI++ATPGR D L S+ V L +DEADRML+ GF+ ++++I+
Sbjct: 265 NQQIRELERGVDILVATPGRLNDLLERGR-VSLQMVRFLALDEADRMLDMGFEPQIRKIV 323
Query: 406 SLI----PSKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQ--EFIRIR 459
+ P RQT+LFSAT + + + + D + Q EF+
Sbjct: 324 QQMDMPPPGVRQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEFVHDS 383
Query: 460 -KRDHLKPALLYQLIRKLDNTSQKRI-VVFVARKETAHKLRIVLGLLGMQVGELHGSLTQ 517
KR HL L Q R+ N ++ + +VFV K+ A L L + G +HG +Q
Sbjct: 384 DKRSHLMDLLHAQ--RENGNQGKQALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQ 441
Query: 518 EQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGR 577
++R ++ +FK+ + P+L+ TD+A+RGLDIP + V+NFD+P + Y+HR+GRT RAG
Sbjct: 442 QEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGN 501
Query: 578 EGRSVTFVGESS 589
G + F +++
Sbjct: 502 SGLATAFFNDNN 513
>At1g31970 [A] KOG0331 ATP-dependent RNA helicase
Length = 537
Score = 204 bits (518), Expect = 5e-52
Identities = 135/366 (36%), Positives = 200/366 (53%), Gaps = 12/366 (3%)
Query: 226 DAKKIVHKTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTA 285
+AK KTF +L VL + + PSPIQS P L G+D+I A TGSGKT
Sbjct: 109 EAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTL 166
Query: 286 AFMIPIIERLLYKPAHIA------STRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLA 339
AF IP I +L K I + +VL+PTRELA+Q++DV + G+ GL
Sbjct: 167 AFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLREAGEPC-GLKSICV 225
Query: 340 VGGLNLRQQEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQE 399
GG + Q A+++ DIVI TPGR D + ++ + V +V+DEADRML+ GF+E
Sbjct: 226 YGGSSKGPQISAIRSGVDIVIGTPGRLRDLIESNV-LRLSDVSFVVLDEADRMLDMGFEE 284
Query: 400 ELQEIMSLIPSKRQTLLFSATMNXXXXXXXXXXXX-XPVRIMIDPPKQAADKLTQEFIRI 458
++ I+S RQ ++FSAT P++++I AA+ + I +
Sbjct: 285 PVRFILSNTNKVRQMVMFSATWPLDVHKLAQEFMDPNPIKVIIGSVDLAANHDVMQIIEV 344
Query: 459 RKRDHLKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQE 518
+ + L L+ K + + R++VF K A +L L G + +HG+ Q
Sbjct: 345 LD-ERARDQRLIALLEKYHKSQKNRVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQS 403
Query: 519 QRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGRE 578
+R +S++ FK P+L+ TD+A+RGLDIP +EVVIN+ P T E Y+HR+GRT RAG++
Sbjct: 404 ERTRSLSLFKEGSCPLLVATDVAARGLDIPDVEVVINYTFPLTTEDYVHRIGRTGRAGKK 463
Query: 579 GRSVTF 584
G + TF
Sbjct: 464 GVAHTF 469
>7300808 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 663
Score = 204 bits (518), Expect = 5e-52
Identities = 122/359 (33%), Positives = 209/359 (57%), Gaps = 17/359 (4%)
Query: 233 KTFNSL--SLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIP 290
++F SL ++S L+ + +G+T + IQS ++ L G+D++ A TGSGKT AF+IP
Sbjct: 168 RSFASLKGAVSEATLRAIKEMGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIP 227
Query: 291 IIE---RLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQ 347
+E +L + P + T V++++PTREL++Q V K + + T+GL +GG N +
Sbjct: 228 AVELINKLRFMPRN--GTGVIIISPTRELSMQTFGVLKELMAHHHH-TYGLVMGGSNRQV 284
Query: 348 QEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSL 407
+ + L +I++ATPGR +DHL+NS F +++ L+IDE DR+LE GF+EEL++I++L
Sbjct: 285 ESEKLGKGINILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINL 344
Query: 408 IPSKRQTLLFSATMNX-XXXXXXXXXXXXPVRIMIDPPKQAA--DKLTQEFIRIRKRDHL 464
+P +RQT+LFSAT P+ + + + A D L Q +I L
Sbjct: 345 LPKRRQTMLFSATQTARIEALSKLALKSEPIYVGVHDNQDTATVDGLEQGYIVCPSEKRL 404
Query: 465 KPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSV 524
+L+ ++K +K+++VF + + + + + V +HG Q +R +
Sbjct: 405 --LVLFTFLKK---NRKKKVMVFFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTTTF 459
Query: 525 NNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTAR-AGREGRSV 582
F + + +L+CTD+A+RGLDIP+++ ++ +D P Y+HRVGRTAR +G G ++
Sbjct: 460 FQFCNAESGILLCTDVAARGLDIPQVDWIVQYDPPDDPREYIHRVGRTARGSGTSGHAL 518
>At2g33730 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 733
Score = 203 bits (516), Expect = 9e-52
Identities = 129/377 (34%), Positives = 199/377 (52%), Gaps = 33/377 (8%)
Query: 233 KTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPII 292
+++ L+ +LK + GY PSPIQ AAIP+ L +D+I A TGSGKTAAF++P++
Sbjct: 313 RSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPML 372
Query: 293 ERLLYKPAHIASTRV-----VVLTPTRELAIQVADVGKNIGKFVNGLTFGLA--VGGLNL 345
+ P VV+ PTRELA Q+ + KF + L F + VGG ++
Sbjct: 373 AYISRLPPMSEENETEGPYAVVMAPTRELAQQIEE---ETVKFAHYLGFRVTSIVGGQSI 429
Query: 346 RQQEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIM 405
+Q + +IVIATPGR ID L + ++ +V+DEADRM++ GF+ ++ ++
Sbjct: 430 EEQGLKITQGCEIVIATPGRLIDCLERRYAV-LNQCNYVVLDEADRMIDMGFEPQVAGVL 488
Query: 406 SLIPSK-----------------RQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAA 448
+PS R T +FSATM PV + I +
Sbjct: 489 DAMPSSNLKPENEEEELDEKKIYRTTYMFSATMPPGVERLARKYLRNPVVVTIGTAGKTT 548
Query: 449 DKLTQEFIRIRKRDHLKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQV 508
D ++Q I +++ + ++L + LD +K +VFV K+ + L G +V
Sbjct: 549 DLISQHVIMMKESEKF-----FRLQKLLDELGEKTAIVFVNTKKNCDSIAKNLDKAGYRV 603
Query: 509 GELHGSLTQEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHR 568
LHG +QEQR S+ F++ + VL+ TD+ RG+DIP + VIN+DMPK E+Y HR
Sbjct: 604 TTLHGGKSQEQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHR 663
Query: 569 VGRTARAGREGRSVTFV 585
+GRT RAG+ G + +F+
Sbjct: 664 IGRTGRAGKSGVATSFL 680
>At5g63120 [A] KOG0331 ATP-dependent RNA helicase
Length = 564
Score = 202 bits (515), Expect = 1e-51
Identities = 127/374 (33%), Positives = 203/374 (53%), Gaps = 9/374 (2%)
Query: 233 KTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPII 292
K F + +L+ + LG+T P+PIQ+ P+AL G+D+I A TGSGKT A+++P +
Sbjct: 138 KMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAL 197
Query: 293 ERLLYKP--AHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQ 350
+ +P V++L PTRELA+Q+ + + G +G+ GG Q +
Sbjct: 198 VHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFG-LRSGVRSTCIYGGAPKGPQIR 256
Query: 351 ALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPS 410
L+ +IVIATPGR ID L + ++ V LV+DEADRML+ GF+ ++++I+S I
Sbjct: 257 DLRRGVEIVIATPGRLIDMLECQHT-NLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP 315
Query: 411 KRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLY 470
RQTLL+SAT P + +I A++ + I I LL
Sbjct: 316 DRQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLT 375
Query: 471 QLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSL 530
L + +D + +I++FV K ++ L + G +HG TQ +R + + FKS
Sbjct: 376 LLKQLMDGS---KILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSG 432
Query: 531 QVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESSQ 590
+ P++ TD+A+RGLD+ I+ V+N+D P T E Y+HR+GRT RAG +G + TF +
Sbjct: 433 RSPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFF--THD 490
Query: 591 DRSIVRSAIRSVEE 604
+ R ++ ++E
Sbjct: 491 NAKFARELVKILQE 504
>Hs13514831 [A] KOG0343 RNA Helicase
Length = 875
Score = 202 bits (514), Expect = 2e-51
Identities = 120/350 (34%), Positives = 190/350 (54%), Gaps = 6/350 (1%)
Query: 235 FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 294
F+ LS+ LKGL Y + IQ I +AL GKD++ A TGSGKT AF++P++E
Sbjct: 71 FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 130
Query: 295 LL-YKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALK 353
L + V++++PTRELA Q +V + +GK + + GL +GG +L+ + + +
Sbjct: 131 LYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKN-HDFSAGLIIGGKDLKHEAERIN 189
Query: 354 TRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKRQ 413
+I++ TPGR + H+ + SF +++LV+DEADR+L+ GF + + ++ +P KRQ
Sbjct: 190 NI-NILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQ 248
Query: 414 TLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQLI 473
TLLFSAT P + + + + T E I K ++LY +
Sbjct: 249 TLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQQKISVLYSFL 308
Query: 474 RKLDNTSQKRIVVFVARKETAHKLRIVLGLL-GMQVGELHGSLTQEQRLQSVNNFKSLQV 532
R + +K IV F + KE + R+ L G+ + LHG Q +R++ N F +
Sbjct: 309 R--SHLKKKSIVFFSSCKEVQYLYRVFCRLRPGVSILALHGRQQQMRRMEVYNEFVRKRA 366
Query: 533 PVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSV 582
VL TD+A+RGLD P + V+ FD P+ Y+HR GRTAR +G ++
Sbjct: 367 AVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEAL 416
>CE09901 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 201 bits (511), Expect = 3e-51
Identities = 112/352 (31%), Positives = 193/352 (54%), Gaps = 9/352 (2%)
Query: 234 TFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 293
TF+ + L +L+G+ + G+ PS IQ A+P L +D+IA A +G+GKTA F I +++
Sbjct: 27 TFDKMGLREDLLRGIYAYGFEKPSAIQQRAVPAILKARDVIAQAQSGTGKTATFSISVLQ 86
Query: 294 RLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALK 353
L + T+ ++L+PTRELA+Q+ V +G ++N + +GG NL + + L
Sbjct: 87 SL---DTQVRETQALILSPTRELAVQIQKVVLALGDYMN-VQCHACIGGTNLGEDIRKLD 142
Query: 354 TRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKRQ 413
+V TPGR D +R + ++++LV+DEAD ML +GF+E+L +I +P Q
Sbjct: 143 YGQHVVSGTPGRVFDMIRRR-NLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQ 201
Query: 414 TLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQLI 473
+L SAT+ P+RI++ + + + Q F+ + + + L I
Sbjct: 202 VVLLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTL----I 257
Query: 474 RKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQVP 533
D + + V+F + L + V +HG + Q+ R + + F++
Sbjct: 258 DLYDTLTITQAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTR 317
Query: 534 VLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFV 585
VLI TD+ +RGLD+P++ +VIN+D+P E+Y+HR+GR+ R GR+G ++ FV
Sbjct: 318 VLISTDVWARGLDVPQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFV 369
>Hs13787206 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 670
Score = 201 bits (510), Expect = 4e-51
Identities = 125/341 (36%), Positives = 199/341 (57%), Gaps = 13/341 (3%)
Query: 245 LKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAHIA- 303
LK + +G+T+ + IQ +I L G+D++A A TGSGKT AF+IP +E L+ K +
Sbjct: 191 LKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVE-LIVKLRFMTR 249
Query: 304 -STRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKTRPDIVIAT 362
T V++L+PTRELA+Q V K + + T+GL +GG N + Q L +I++AT
Sbjct: 250 NGTGVLILSPTRELAMQTFGVLKELMTH-HVHTYGLIMGGSNRSAEAQKLGNGINIIVAT 308
Query: 363 PGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKRQTLLFSATM- 421
PGR +DH++N+ F +++ LVIDEADR+L+ GF+EEL++I+ L+P++RQT+LFSAT
Sbjct: 309 PGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQT 368
Query: 422 NXXXXXXXXXXXXXPVRIMIDPPKQAA--DKLTQEFIRIRKRDHLKPALLYQLIRKLDNT 479
P+ + +D K A D L Q ++ LL+ ++K
Sbjct: 369 RKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRF--LLLFTFLKK---N 423
Query: 480 SQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQVPVLICTD 539
+K+++VF + + +L + + V +HG Q +R + F + L+CTD
Sbjct: 424 RKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGTLLCTD 483
Query: 540 LASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGR 580
+A+RGLDIP+++ ++ +D P + Y+HRVGRTAR G GR
Sbjct: 484 VAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTAR-GLNGR 523
>YGL078c [A] KOG0331 ATP-dependent RNA helicase
Length = 523
Score = 200 bits (509), Expect = 6e-51
Identities = 133/364 (36%), Positives = 204/364 (55%), Gaps = 17/364 (4%)
Query: 234 TFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 293
+F+ LSL + + + P+PIQ+ A P L GKD++ A TGSGKT AF +P I
Sbjct: 115 SFDYLSLDSSIQAEISK--FPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAIS 172
Query: 294 RLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVN--GLTFGLAVGGLNLRQQEQA 351
L+ +V+V++PTRELA Q+ D N+ + G+ GG+ +Q
Sbjct: 173 HLMNDQKK-RGIQVLVISPTRELASQIYD---NLIVLTDKVGMQCCCVYGGVPKDEQRIQ 228
Query: 352 LKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIM-SLIPS 410
LK + +V+ATPGR +D L+ S + V LV+DEADRMLE+GF+E+++ I+ S
Sbjct: 229 LK-KSQVVVATPGRLLDLLQEG-SVDLSQVNYLVLDEADRMLEKGFEEDIKNIIRETDAS 286
Query: 411 KRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQ--AADKLTQEFIRIRKRDHLKPAL 468
KRQTL+F+AT P+++ I Q A ++TQ + R K
Sbjct: 287 KRQTLMFTATWPKEVRELASTFMNNPIKVSIGNTDQLTANKRITQIVEVVDPRG--KERK 344
Query: 469 LYQLIRKLDNTSQK--RIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNN 526
L +L++K + +K ++++F K+ A ++ L G V +HG L+Q+QR Q++N
Sbjct: 345 LLELLKKYHSGPKKNEKVLIFALYKKEAARVERNLKYNGYNVAAIHGDLSQQQRTQALNE 404
Query: 527 FKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVG 586
FKS + +L+ TD+A+RGLDIP ++ VIN P T E Y+HR+GRT RAG+ G + T
Sbjct: 405 FKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFT 464
Query: 587 ESSQ 590
E +
Sbjct: 465 EQEK 468
>At5g08620 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 563
Score = 200 bits (509), Expect = 6e-51
Identities = 123/392 (31%), Positives = 210/392 (53%), Gaps = 23/392 (5%)
Query: 235 FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 294
F+ LS LKG+ G+ + + +Q A +P+ L GKDI+A A TG+GKT AF++P IE
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEA 141
Query: 295 LLYKPAHIASTR-----VVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQE 349
++ P R V+V+ PTRELA Q A + K+ + + +GG L ++
Sbjct: 142 VIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTKLPTEQ 201
Query: 350 QALKTRP-DIVIATPGRFIDHLRNSASFSVD--SVEILVIDEADRMLEEGFQEELQEIMS 406
+ L+ P I++ATPGR DH+ N++ F+ V++LV+DEAD +L+ GF+ E++ I++
Sbjct: 202 RRLQKSPCQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIERIIA 261
Query: 407 LIPSKRQTLLFSATMNXXXXXXXXXXXXXP---VRIMIDPPKQAADKLTQEFIRIRKRDH 463
+P +RQT LFSAT++ V + + + K++Q ++ H
Sbjct: 262 AVPKQRQTFLFSATVSDEVRQICHVALKRDHEFVNCVQEGAGETHQKVSQMYMIASLDRH 321
Query: 464 LKPALLYQLIRK--LDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRL 521
+LLY L++K DN K +++F + +LG L + V E+H Q R
Sbjct: 322 F--SLLYGLLKKHITDNVGYK-VIIFCTTAMVTRLVADLLGKLSLNVREIHSRKPQSYRT 378
Query: 522 QSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRS 581
+ + F+ + +L+ +D+++RG+D P + +V+ +P E Y+HR+GRT R G+EG
Sbjct: 379 RVSDEFRKSKSIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEG 438
Query: 582 VTFVG-------ESSQDRSIVRSAIRSVEENA 606
V + S +D I +S++ ++ A
Sbjct: 439 VLLLAPWEEYFLSSVKDLPITKSSLPPIDHEA 470
>At4g33370 [A] KOG0341 DEAD-box protein abstrakt
Length = 542
Score = 200 bits (508), Expect = 8e-51
Identities = 125/376 (33%), Positives = 200/376 (52%), Gaps = 23/376 (6%)
Query: 233 KTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPII 292
K F + P+L+ L G P+PIQ +P+ L G+D+I A TGSGKT F++P+I
Sbjct: 97 KNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMI 156
Query: 293 -----ERLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFG--------LA 339
E ++ A +V+ P+RELA Q DV + +FV L L
Sbjct: 157 ILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDV---VEQFVASLVEDGYPRLRSLLC 213
Query: 340 VGGLNLRQQEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQE 399
+GG+++R Q +K IV+ATPGR D L S+D+ +L +DEADR+++ GF++
Sbjct: 214 IGGVDMRSQLDVVKKGVHIVVATPGRLKDILAKK-KMSLDACRLLTLDEADRLVDLGFED 272
Query: 400 ELQEIMSLIPSKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIR 459
+++ + S+RQTLLFSATM PV + + A + QE ++
Sbjct: 273 DIRHVFDHFKSQRQTLLFSATMPAKIQIFATSALVKPVTVNVGRAGAANLDVIQEVEYVK 332
Query: 460 KRDHLKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQ 519
+ A + L+ L T+ +++F K + L L G++ +HG QE
Sbjct: 333 QE-----AKIVYLLECLQKTTPP-VLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQED 386
Query: 520 RLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREG 579
R +++ FK+ + VL+ TD+AS+GLD P I+ VIN+DMP E Y+HR+GRT R G+ G
Sbjct: 387 RDYAISLFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTG 446
Query: 580 RSVTFVGESSQDRSIV 595
+ TF+ ++ + +++
Sbjct: 447 IATTFINKNQSEITLL 462
>CE25231 [A] KOG0343 RNA Helicase
Length = 732
Score = 199 bits (507), Expect = 1e-50
Identities = 124/367 (33%), Positives = 198/367 (53%), Gaps = 16/367 (4%)
Query: 235 FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIE- 293
F LS L+GL YT P+ IQ I +L G D++ A TGSGKT A +IP++E
Sbjct: 78 FEDFPLSWRTLEGLKDNDYTKPTEIQRDTIAYSLTGSDVVGAAKTGSGKTLALVIPVLEA 137
Query: 294 --RLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQA 351
R + P + ++++PTRELA+Q +G +G + GL +GG ++ +
Sbjct: 138 LWRAKWSPDY--GLGALIISPTRELALQTFSTINAVGAH-HGFSCGLVIGGSDVAFERNR 194
Query: 352 LKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSK 411
+ + +I++ TPGR + H+ +A S DS+++LV+DEADRML+ GF ++L I++ +P++
Sbjct: 195 I-SGINIIVCTPGRLLQHMDENAQMSCDSLQVLVLDEADRMLDMGFSKQLNSIINNLPAE 253
Query: 412 RQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAA--DKLTQEFIRIRKRDHLKPALL 469
RQTLLFSAT PV + + AA D L Q ++ + + +
Sbjct: 254 RQTLLFSATQTRNVKDLCRVCTNDPVFVSVHENASAATPDNLKQSYVIVEEEHKINALWS 313
Query: 470 YQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLL--GMQVGELHGSLTQEQRLQSVNNF 527
+ ++ +K+ +VFV+ + A L L G+ V L G++ Q++R+++ F
Sbjct: 314 F-----IEAHRKKKSLVFVSSCKQARFLTEAFSQLRPGLPVMGLWGTMNQKKRIETFTKF 368
Query: 528 KSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGE 587
+ VLI TD+ASRGLD I+ VI D P + Y+HRVGR+AR G S+ V
Sbjct: 369 DESKAAVLIATDVASRGLDFEHIDWVIQVDCPAQIDDYIHRVGRSARMDDSGNSLLMVSP 428
Query: 588 SSQDRSI 594
S ++ I
Sbjct: 429 SQEEAMI 435
>7294797 [A] KOG0339 ATP-dependent RNA helicase
Length = 791
Score = 199 bits (507), Expect = 1e-50
Identities = 127/374 (33%), Positives = 199/374 (52%), Gaps = 13/374 (3%)
Query: 234 TFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 293
+F ++K + YT P+PIQ+ A+P AL G+DII A TGSGKTAAF+ P++
Sbjct: 270 SFGHFGFDEQLIKAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPMLM 329
Query: 294 RLL----YKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQE 349
++ KP ++L PTREL++Q+ + K GK N L GG + +Q
Sbjct: 330 HVMDQKQLKPGD--GPIGLILAPTRELSLQIYNEAKKFGKVYN-LNVVCCYGGGSKWEQS 386
Query: 350 QALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIP 409
+AL+ +I++ATPGR ID ++ A+ ++ V LV+DEADRM GF+ +++ I + +
Sbjct: 387 KALEQGAEIIVATPGRMIDMVKMKAT-NLRRVTFLVLDEADRMFHMGFEPQVRSICNHVR 445
Query: 410 SKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALL 469
RQ L+FSAT PVRI+ +A +TQ LL
Sbjct: 446 PDRQCLMFSATFKKRIERLARDVLSDPVRIVQGDLNEANQDITQSVYVFPNPLQKWNWLL 505
Query: 470 YQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKS 529
L++ L S+ +++FV +K A + L + LHG + Q R + + FK
Sbjct: 506 CHLVKFL---SEGSVLIFVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQFKR 562
Query: 530 LQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESS 589
+ +L+ TD+A+RGLDIP I V+N+D + E + HR+GRT RAG +G + T V +
Sbjct: 563 KECDILVATDVAARGLDIPHIRNVVNYDTARDIETHTHRIGRTGRAGEKGNAYTLV--TD 620
Query: 590 QDRSIVRSAIRSVE 603
+D+ +R++E
Sbjct: 621 KDKEFAGHLVRNLE 634
>YJL033w [A] KOG0343 RNA Helicase
Length = 770
Score = 199 bits (506), Expect = 1e-50
Identities = 121/389 (31%), Positives = 209/389 (53%), Gaps = 18/389 (4%)
Query: 226 DAKKIVHKTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTA 285
D K K F L +S P LKGL + + IQ+ +IP++L G D++A A TGSGKT
Sbjct: 34 DPKITKAKFFKDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTL 93
Query: 286 AFMIPIIERLLY-KPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLN 344
AF++P+IE+L K ++++PTRELA+Q+ +V IG + + GL +GG +
Sbjct: 94 AFLVPVIEKLYREKWTEFDGLGALIISPTRELAMQIYEVLTKIGSHTS-FSAGLVIGGKD 152
Query: 345 LRQQEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEI 404
++ + + + +R +I+I TPGR + HL + + ++++LV+DEADR L+ GF++ L I
Sbjct: 153 VKFELERI-SRINILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAI 211
Query: 405 MSLIPSKRQTLLFSATMNXXXXXXXXXXXXXPVRI--------MIDPPKQAADKLTQEFI 456
+S + RQTLLFSAT + + ++ + L Q +I
Sbjct: 212 VSTLSPSRQTLLFSATQSQSVADLARLSLTDYKTVGTHDVMDGSVNKEASTPETLQQFYI 271
Query: 457 RIRKRDHLKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLL--GMQVGELHGS 514
+ D L +L+ I+ + + +++VF++ + H + + G+ + LHG
Sbjct: 272 EVPLADKLD--ILFSFIK---SHLKCKMIVFLSSSKQVHFVYETFRKMQPGISLMHLHGR 326
Query: 515 LTQEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTAR 574
Q R ++++ F Q L TD+ +RG+D P ++ V+ D P+ + Y+HRVGR AR
Sbjct: 327 QKQRARTETLDKFNRAQQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRVGRCAR 386
Query: 575 AGREGRSVTFVGESSQDRSIVRSAIRSVE 603
G++G+S+ + Q+ + R R +E
Sbjct: 387 YGKKGKSLIMLTPQEQEAFLKRLNARKIE 415
>7299019 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 199 bits (505), Expect = 2e-50
Identities = 119/363 (32%), Positives = 202/363 (54%), Gaps = 11/363 (3%)
Query: 234 TFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 293
TFN+++L +L+G+ + G+ PS IQ +I + G+D+IA A +G+GKTA F I I++
Sbjct: 27 TFNAMNLKEELLRGIYAYGFEKPSAIQQRSITPIVKGRDVIAQAQSGTGKTATFSISILQ 86
Query: 294 RLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALK 353
L + T+V+ L+PTRELA+Q+ V +G +N + + +GG NL + + L
Sbjct: 87 SL---DTTLRETQVLCLSPTRELAVQIQKVILALGDMMN-VQCHVCIGGTNLGEDIRKLD 142
Query: 354 TRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKRQ 413
IV TPGR D ++ ++++LV+DEAD ML +GF+E++ ++ +P Q
Sbjct: 143 YGQHIVSGTPGRVFDMIKRRV-LRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ 201
Query: 414 TLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQLI 473
+L SAT+ P+RI++ + + + Q F+ + +R+ K L L
Sbjct: 202 VVLISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAV-EREEWKFDTLCDLY 260
Query: 474 RKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQVP 533
L T + V+F K L + V +HG + Q++R + + F++ Q
Sbjct: 261 DTLTIT---QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRAGQSR 317
Query: 534 VLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESSQDRS 593
VLI TD+ +RG+D+ ++ +VIN+D+P E+Y+HR+GR+ R GR+G ++ FV S D
Sbjct: 318 VLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFV--KSDDIR 375
Query: 594 IVR 596
I+R
Sbjct: 376 ILR 378
>7298989 [A] KOG0336 ATP-dependent RNA helicase
Length = 703
Score = 199 bits (505), Expect = 2e-50
Identities = 127/364 (34%), Positives = 198/364 (53%), Gaps = 10/364 (2%)
Query: 244 VLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAHIA 303
+L+ + +G++ PSPIQS A PI L G D+I A TG+GKT AF++P + Y+
Sbjct: 294 MLEEITKMGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIHTEYQSTPRG 353
Query: 304 S---TRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKTRPDIVI 360
+ V+VL PTRELA+Q+ K G+ GG N Q L+ +I+I
Sbjct: 354 TRGGANVLVLAPTRELALQIEMEVKKYS--FRGMKAVCVYGGGNRNMQISDLERGAEIII 411
Query: 361 ATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKRQTLLFSAT 420
TPGR D + + V ++ LV+DEADRML+ GF+ +++++M I RQT++ SAT
Sbjct: 412 CTPGRLNDLIMANV-IDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRPDRQTIMTSAT 470
Query: 421 MNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQLIRKLDNTS 480
P+++ + AA ++ I++ + D K + ++ + +T
Sbjct: 471 WPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQIIKLMEDDMDKFNTITSFVKNMSSTD 530
Query: 481 QKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQVPVLICTDL 540
+I++F RK A L L L G +HG+ Q R Q++ + KS V +L+ TD+
Sbjct: 531 --KIIIFCGRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSGVVRILVATDV 588
Query: 541 ASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESSQDRSIVRSAIR 600
ASRGLDI I VIN+D P E Y+HRVGRT RAGR+G S++F + +D ++ + I
Sbjct: 589 ASRGLDIEDITHVINYDFPHNIEEYVHRVGRTGRAGRQGTSISFF--TREDWAMAKELIE 646
Query: 601 SVEE 604
++E
Sbjct: 647 ILQE 650
>At1g54270 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 412
Score = 198 bits (504), Expect = 2e-50
Identities = 121/355 (34%), Positives = 191/355 (53%), Gaps = 9/355 (2%)
Query: 231 VHKTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIP 290
VH++F+++ L +L+G+ + G+ PS IQ I G D+I A +G+GKTA F
Sbjct: 37 VHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSG 96
Query: 291 IIERLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQ 350
++++L Y + + +VL PTRELA Q+ V + +G + G+ VGG ++R+ ++
Sbjct: 97 VLQQLDYA---LLQCQALVLAPTRELAQQIEKVMRALGDY-QGVKVHACVGGTSVREDQR 152
Query: 351 ALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPS 410
L+ +V+ TPGR D LR S D +++ V+DEAD ML GF++++ +I L+P
Sbjct: 153 ILQAGVHVVVGTPGRVFDMLRRQ-SLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPP 211
Query: 411 KRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLY 470
K Q +FSATM PVRI++ + + + Q ++ + K D K L
Sbjct: 212 KIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEDW-KLETLC 270
Query: 471 QLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSL 530
L L T V+FV + L + V HG + Q R + F+S
Sbjct: 271 DLYETLAITQS---VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSG 327
Query: 531 QVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFV 585
VLI TDL +RG+D+ ++ +VINFD+P E YLHR+GR+ R GR+G ++ FV
Sbjct: 328 SSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFV 382
>CE01341 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 402
Score = 198 bits (503), Expect = 3e-50
Identities = 120/380 (31%), Positives = 205/380 (53%), Gaps = 11/380 (2%)
Query: 231 VHKTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIP 290
V ++F+ + L +L+G+ G+ PS IQ AI GKD+IA A +G+GKTA F +
Sbjct: 27 VVESFDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVS 86
Query: 291 IIERLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQ 350
I++R+ ++ H+ + +V+ PTRELA Q+ V +G+++N + +GG ++R ++
Sbjct: 87 ILQRIDHEDPHV---QALVMAPTRELAQQIQKVMSALGEYLN-VNILPCIGGTSVRDDQR 142
Query: 351 ALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPS 410
L+ +V+ TPGR D + +A +++ V+DEAD ML GF++++ E+ +P
Sbjct: 143 KLEAGIHVVVGTPGRVGDMINRNA-LDTSRIKMFVLDEADEMLSRGFKDQIYEVFRSMPQ 201
Query: 411 KRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLY 470
Q +L SATM P+RI++ + + + Q +I ++K D K L
Sbjct: 202 DVQVVLLSATMPSEVLDVTNRFMRNPIRILVKKDELTLEGIRQFYINVQK-DEWKFDCLC 260
Query: 471 QLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSL 530
L ++ T + V+F + L + V LHG + Q +R + F+S
Sbjct: 261 DLYNVVNVT---QAVIFCNTRRKVDTLTEKMTENQFTVSCLHGDMDQAERDTIMREFRSG 317
Query: 531 QVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESS- 589
VLI TD+ +RG+D+ ++ +VIN+D+P E Y+HR+GR+ R GR+G ++ FV E+
Sbjct: 318 SSRVLITTDILARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTENDA 377
Query: 590 -QDRSIVRSAIRSVEENAES 608
Q + I +EE ES
Sbjct: 378 RQLKEIESYYTTQIEEMPES 397
>At3g06480 [A] KOG0331 ATP-dependent RNA helicase
Length = 1088
Score = 198 bits (503), Expect = 3e-50
Identities = 140/374 (37%), Positives = 205/374 (54%), Gaps = 14/374 (3%)
Query: 234 TFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIP--I 291
TF S L +L+ L S G+ SP+PIQ+ PIAL +DI+A A TGSGKT ++IP I
Sbjct: 436 TFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFI 495
Query: 292 IERLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQA 351
+ R + T V++L PTRELA Q+ D G+ + ++ GG Q +
Sbjct: 496 LLRHCRNDSRNGPT-VLILAPTRELATQIQDEALRFGRS-SRISCTCLYGGAPKGPQLKE 553
Query: 352 LKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSK 411
L+ DIV+ATPGR D L V +LV+DEADRML+ GF+ ++++I++ IP +
Sbjct: 554 LERGADIVVATPGRLNDILEMKM-IDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPR 612
Query: 412 RQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQ-AADKLTQEFIRIRKRDHLKPALLY 470
RQTL+++AT PV++ I + AA+K +++ + + K L
Sbjct: 613 RQTLMYTATWPKEVRKIASDLLVNPVQVNIGRVDELAANKAITQYVEVVPQME-KERRLE 671
Query: 471 QLIRKLDNTSQKRIVVFVARKETA-HKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKS 529
Q++R + S ++++F + K H R V G V +HG TQ +R +N F+S
Sbjct: 672 QILRSQERGS--KVIIFCSTKRLCDHLARSVGRHFGAVV--IHGDKTQGERDWVLNQFRS 727
Query: 530 LQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESS 589
+ VLI TD+A+RGLDI I VVIN+D P E Y+HR+GRT RAG G + TF E
Sbjct: 728 GKSCVLIATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTE-- 785
Query: 590 QDRSIVRSAIRSVE 603
QD I+ +E
Sbjct: 786 QDWKYAPDLIKVLE 799
>SPCC10H11.01 [A] KOG0334 RNA helicase
Length = 1014
Score = 197 bits (502), Expect = 4e-50
Identities = 125/356 (35%), Positives = 190/356 (53%), Gaps = 6/356 (1%)
Query: 234 TFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 293
+++ LS + + SLGY P+ IQ+ AIP G+D+I A TGSGKT AF++P+
Sbjct: 419 SWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFR 478
Query: 294 RLL-YKPAHIASTRV-VVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQA 351
+ +P + +++TPTRELA+Q+ K K +N + A GG ++ Q
Sbjct: 479 HIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLN-IRACCAYGGAPIKDQIAD 537
Query: 352 LKTRPDIVIATPGRFIDHLRNSAS--FSVDSVEILVIDEADRMLEEGFQEELQEIMSLIP 409
LK +IV+ TPGR ID L +A ++ LV+DEADRM + GF+ ++ I++ I
Sbjct: 538 LKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIR 597
Query: 410 SKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALL 469
RQT+LFSAT PV I + A ++ Q + +R + LL
Sbjct: 598 PDRQTVLFSATFPRAMEALARKVLKKPVEITVGGRSVVASEVEQ-IVEVRPEESKFSRLL 656
Query: 470 YQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKS 529
L +N R +VFV R+E+A L L G +HG Q R +++++K+
Sbjct: 657 ELLGELYNNQLDVRTLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYKA 716
Query: 530 LQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFV 585
VLI T + +RGLD+ +++V+N+D P E Y+HRVGRT RAG G +VTF+
Sbjct: 717 GVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFI 772
>At3g58510 [A] KOG0335 ATP-dependent RNA helicase
Length = 603
Score = 197 bits (501), Expect = 5e-50
Identities = 135/394 (34%), Positives = 206/394 (52%), Gaps = 27/394 (6%)
Query: 234 TFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 293
TF + L + + Y P+P+Q AIPI L +D++A A TGSGKTAAF PII
Sbjct: 152 TFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIIS 211
Query: 294 RLLYKPAHIASTR--------VVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNL 345
++ K H+ R V+L+PTRELA Q+ D K + G+ +A GG +
Sbjct: 212 GIM-KDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFS-YQTGVKVVVAYGGTPI 269
Query: 346 RQQEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEI- 404
QQ + L+ DI++ATPGR D L A S+ + L +DEADRML+ GF+ ++++I
Sbjct: 270 HQQLRELERGCDILVATPGRLNDLLER-ARVSMQMIRFLALDEADRMLDMGFEPQIRKIV 328
Query: 405 --MSLIP-SKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKR 461
M + P RQT+LFSAT + + + + D +TQ +++
Sbjct: 329 EQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVGSSTDLITQRVEFVQES 388
Query: 462 DHLKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRL 521
D K + L L+ T K K A L L + +HG TQ++R
Sbjct: 389 D--KRSHLMDLLHAQRETQDKT-------KRGADTLENWLCMNEFPATSIHGDRTQQERE 439
Query: 522 QSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRS 581
++ +FK+ + P+L+ TD+A+RGLDIP + V+NFD+P + Y+HR+GRT RAG+ G +
Sbjct: 440 VALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIA 499
Query: 582 VTFVGESSQDRSIVRSAIRSVEE-NAESGKALSR 614
F E+ + + RS ++E N E + L+R
Sbjct: 500 TAFFNEN--NAQLARSLAELMQEANQEVPEWLTR 531
>At3g13920 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 412
Score = 196 bits (499), Expect = 8e-50
Identities = 118/355 (33%), Positives = 193/355 (54%), Gaps = 9/355 (2%)
Query: 231 VHKTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIP 290
VH++F+++ L +L+G+ + G+ PS IQ I G D+I A +G+GKTA F
Sbjct: 37 VHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSG 96
Query: 291 IIERLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQ 350
++++L + + + +VL PTRELA Q+ V + +G ++ G+ VGG ++R+ ++
Sbjct: 97 VLQQLDFS---LIQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQR 152
Query: 351 ALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPS 410
L+ +V+ TPGR D L+ S D++++ V+DEAD ML GF++++ +I L+P
Sbjct: 153 ILQAGVHVVVGTPGRVFDMLKRQ-SLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPP 211
Query: 411 KRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLY 470
K Q +FSATM PVRI++ + + + Q ++ + K + K L
Sbjct: 212 KIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEW-KLETLC 270
Query: 471 QLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSL 530
L L T V+FV + L + V HG + Q R + F+S
Sbjct: 271 DLYETLAITQS---VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSG 327
Query: 531 QVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFV 585
VLI TDL +RG+D+ ++ +VINFD+P E YLHR+GR+ R GR+G ++ FV
Sbjct: 328 SSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFV 382
>7296891 [A] KOG0341 DEAD-box protein abstrakt
Length = 619
Score = 196 bits (499), Expect = 8e-50
Identities = 117/368 (31%), Positives = 202/368 (54%), Gaps = 17/368 (4%)
Query: 233 KTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPII 292
++F + + +L GL + G +P+PIQ +P L G+D+I A TGSGKT F++P+I
Sbjct: 177 RSFREMKFPKGILNGLAAKGIKNPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVI 236
Query: 293 ERLLYKPAHIASTRV-----VVLTPTRELAIQVADVGKNIGKFVNG-----LTFGLAVGG 342
L + + R +++ P+RELA Q ++ ++ K + + LA+GG
Sbjct: 237 MFALEQEYSLPFERNEGPYGLIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGG 296
Query: 343 LNLRQQEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQ 402
L + + + IV+ATPGR +D L + ++D L +DEADRM++ GF+E+++
Sbjct: 297 LPVSEALDVISRGVHIVVATPGRLMDML-DKKILTLDMCRYLCMDEADRMIDMGFEEDVR 355
Query: 403 EIMSLIPSKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRD 462
I S +RQTLLFSATM PV I + A+ +TQ+ +++
Sbjct: 356 TIFSFFKGQRQTLLFSATMPKKIQNFARSALVKPVTINVGRAGAASMNVTQQVEYVKQE- 414
Query: 463 HLKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQ 522
A + L+ L T+ +++F +K+ + L L G++ +HG QE+R +
Sbjct: 415 ----AKVVYLLDCLQKTAPP-VLIFAEKKQDVDCIHEYLLLKGVEAVAIHGGKDQEERSR 469
Query: 523 SVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSV 582
+V+ ++ + VL+ TD+AS+GLD P ++ VIN+DMP E Y+HR+GRT R+ +G +
Sbjct: 470 AVDAYRVGKKDVLVATDVASKGLDFPNVQHVINYDMPDDIENYVHRIGRTGRSNTKGLAT 529
Query: 583 TFVGESSQ 590
T + ++++
Sbjct: 530 TLINKTTE 537
>YDL160c [A] KOG0326 ATP-dependent RNA helicase
Length = 506
Score = 196 bits (498), Expect = 1e-49
Identities = 119/352 (33%), Positives = 186/352 (52%), Gaps = 11/352 (3%)
Query: 234 TFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 293
TF L R +L G+ G+ PSPIQ AIP+A+ G+DI+A A G+GKTAAF+IP +E
Sbjct: 47 TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLE 106
Query: 294 RLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALK 353
++ K + + +++ PTRELA+Q + V + +GK G++ + GG NLR L
Sbjct: 107 KVKPK---LNKIQALIMVPTRELALQTSQVVRTLGKHC-GISCMVTTGGTNLRDDILRLN 162
Query: 354 TRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKRQ 413
I++ TPGR +D L + + + ++DEAD+ML F+ +++I+S +P Q
Sbjct: 163 ETVHILVGTPGRVLD-LASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQ 221
Query: 414 TLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQLI 473
+LLFSAT P I + + +TQ + + +R L L L
Sbjct: 222 SLLFSATFPLTVKEFMVKHLHKPYEINL-MEELTLKGITQYYAFVEERQKLH--CLNTLF 278
Query: 474 RKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQVP 533
KL + ++F L + LG H + Q++R + + F+ +V
Sbjct: 279 SKLQIN---QAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVR 335
Query: 534 VLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFV 585
L+C+DL +RG+DI + VVINFD PKT E YLHR+GR+ R G G ++ +
Sbjct: 336 TLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLI 387
>Hs21071032 [A] KOG0341 DEAD-box protein abstrakt
Length = 622
Score = 196 bits (498), Expect = 1e-49
Identities = 118/369 (31%), Positives = 198/369 (52%), Gaps = 17/369 (4%)
Query: 233 KTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPII 292
K+F + +L+GL G P+PIQ IP L G+D+I A TGSGKT F +P+I
Sbjct: 181 KSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVI 240
Query: 293 ERLLYKPAHIASTRV-----VVLTPTRELAIQVADVGKNIGKFVNG-----LTFGLAVGG 342
L + + ++ +++ P+RELA Q + + + + L L +GG
Sbjct: 241 MFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGG 300
Query: 343 LNLRQQEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQ 402
+++++Q + ++ +++ATPGR +D L+ S+D L +DEADRM++ GF+ +++
Sbjct: 301 MSVKEQMETIRHGVHMMVATPGRLMDLLQKKM-VSLDICRYLALDEADRMIDMGFEGDIR 359
Query: 403 EIMSLIPSKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRD 462
I S +RQTLLFSATM PV I + A+ + QE +++
Sbjct: 360 TIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEE- 418
Query: 463 HLKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQ 522
A + L+ L T +++F +K + L L G++ +HG QE+R +
Sbjct: 419 ----AKMVYLLECLQKTPPP-VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTK 473
Query: 523 SVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSV 582
++ F+ + VL+ TD+AS+GLD P I+ VIN+DMP+ E Y+HR+GRT R+G G +
Sbjct: 474 AIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIAT 533
Query: 583 TFVGESSQD 591
TF+ ++ +
Sbjct: 534 TFINKACDE 542
>CE28031 [A] KOG0334 RNA helicase
Length = 747
Score = 196 bits (498), Expect = 1e-49
Identities = 127/367 (34%), Positives = 195/367 (52%), Gaps = 14/367 (3%)
Query: 233 KTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPII 292
KT+ ++ ++ L Y+ P+ IQ+ AIP + G+D+I A TGSGKT AF++P+
Sbjct: 304 KTWAQCGVNLKMMNVLKKFEYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMF 363
Query: 293 ERLLYKPAHIASTR--VVVLTPTRELAIQVADVGKNIGKFVN--GLTFGLAVGGLNLRQQ 348
+L +P V+L PTRELA+Q K KF GL GG+ + +Q
Sbjct: 364 RHILDQPELEEGDGPIAVILAPTRELAMQTY---KEANKFAKPLGLKVACTYGGVGISEQ 420
Query: 349 EQALKTRPDIVIATPGRFIDHLRNSAS--FSVDSVEILVIDEADRMLEEGFQEELQEIMS 406
LK +IV+ TPGR ID L ++ ++ V LV+DEADRM ++GF+ ++ ++++
Sbjct: 421 IADLKRGAEIVVCTPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVN 480
Query: 407 LIPSKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKP 466
I +QT+LFSAT PV I++ +TQ + +H K
Sbjct: 481 NIRPDKQTVLFSATFPRHMEALARKVLDKPVEILVGGKSVVCSDITQNAVICA--EHQKF 538
Query: 467 ALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQ-VGELHGSLTQEQRLQSVN 525
L +L+ +VFV ++E A + L G V LHG + Q R S+
Sbjct: 539 LKLLELLGMYYEEGSS--IVFVDKQEKADDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIA 596
Query: 526 NFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFV 585
+FK+ + VL+ T +A+RGLD+ + +V+N+D P YE Y+HRVGRT RAGR+G + TFV
Sbjct: 597 DFKTGVIKVLVATSVAARGLDVKNLILVVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTFV 656
Query: 586 GESSQDR 592
Q++
Sbjct: 657 LPEHQEK 663
>CE27427 [A] KOG0334 RNA helicase
Length = 970
Score = 196 bits (498), Expect = 1e-49
Identities = 127/367 (34%), Positives = 195/367 (52%), Gaps = 14/367 (3%)
Query: 233 KTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPII 292
KT+ ++ ++ L Y+ P+ IQ+ AIP + G+D+I A TGSGKT AF++P+
Sbjct: 304 KTWAQCGVNLKMMNVLKKFEYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMF 363
Query: 293 ERLLYKPAHIASTR--VVVLTPTRELAIQVADVGKNIGKFVN--GLTFGLAVGGLNLRQQ 348
+L +P V+L PTRELA+Q K KF GL GG+ + +Q
Sbjct: 364 RHILDQPELEEGDGPIAVILAPTRELAMQTY---KEANKFAKPLGLKVACTYGGVGISEQ 420
Query: 349 EQALKTRPDIVIATPGRFIDHLRNSAS--FSVDSVEILVIDEADRMLEEGFQEELQEIMS 406
LK +IV+ TPGR ID L ++ ++ V LV+DEADRM ++GF+ ++ ++++
Sbjct: 421 IADLKRGAEIVVCTPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVN 480
Query: 407 LIPSKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKP 466
I +QT+LFSAT PV I++ +TQ + +H K
Sbjct: 481 NIRPDKQTVLFSATFPRHMEALARKVLDKPVEILVGGKSVVCSDITQNAVICA--EHQKF 538
Query: 467 ALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQ-VGELHGSLTQEQRLQSVN 525
L +L+ +VFV ++E A + L G V LHG + Q R S+
Sbjct: 539 LKLLELLGMYYEEGSS--IVFVDKQEKADDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIA 596
Query: 526 NFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFV 585
+FK+ + VL+ T +A+RGLD+ + +V+N+D P YE Y+HRVGRT RAGR+G + TFV
Sbjct: 597 DFKTGVIKVLVATSVAARGLDVKNLILVVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTFV 656
Query: 586 GESSQDR 592
Q++
Sbjct: 657 LPEHQEK 663
>Hs7661920 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 411
Score = 196 bits (497), Expect = 1e-49
Identities = 113/355 (31%), Positives = 195/355 (54%), Gaps = 9/355 (2%)
Query: 231 VHKTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIP 290
V TF+++ L +L+G+ + G+ PS IQ AI + G+D+IA + +G+GKTA F I
Sbjct: 36 VTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSIS 95
Query: 291 IIERLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQ 350
+++ L + T+ ++L PTRELA+Q+ +G ++N + +GG N+ + +
Sbjct: 96 VLQCL---DIQVRETQALILAPTRELAVQIQKGLLALGDYMN-VQCHACIGGTNVGEDIR 151
Query: 351 ALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPS 410
L +V TPGR D +R S ++++LV+DEAD ML +GF+E++ ++ +P
Sbjct: 152 KLDYGQHVVAGTPGRVFDMIRRR-SLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPP 210
Query: 411 KRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLY 470
Q +L SAT+ P+RI++ + + + Q F+ + +R+ K L
Sbjct: 211 ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAV-EREEWKFDTLC 269
Query: 471 QLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSL 530
L L T + V+F K L + V +HG + Q++R + F+S
Sbjct: 270 DLYDTLTIT---QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSG 326
Query: 531 QVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFV 585
VLI TD+ +RGLD+P++ ++IN+D+P E+Y+HR+GR+ R GR+G ++ FV
Sbjct: 327 ASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFV 381
>7297048 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 389
Score = 196 bits (497), Expect = 1e-49
Identities = 113/366 (30%), Positives = 199/366 (53%), Gaps = 11/366 (3%)
Query: 231 VHKTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIP 290
V+ F+ ++L +L+G+ G+ PS IQ AI + G+D+IA A +G+GKTA F I
Sbjct: 14 VYDNFDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIA 73
Query: 291 IIERLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQ 350
I++++ I + ++L PTRELA Q+ V +G+++ + +GG N+R+ +
Sbjct: 74 ILQQI---DTSIRECQALILAPTRELATQIQRVVMALGEYMKVHSHA-CIGGTNVREDAR 129
Query: 351 ALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPS 410
L++ +V+ TPGR D + N +++ V+DEAD ML GF++++Q++ ++P
Sbjct: 130 ILESGCHVVVGTPGRVYDMI-NRKVLRTQYIKLFVLDEADEMLSRGFKDQIQDVFKMLPP 188
Query: 411 KRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLY 470
Q +L SATM PV I++ + + + Q ++ + K+++ K L
Sbjct: 189 DVQVILLSATMPPDVLEVSRCFMRDPVSILVKKEELTLEGIKQFYVNV-KQENWKLGTLC 247
Query: 471 QLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSL 530
L D S + V+F + +L + + V +HG + Q R + F+S
Sbjct: 248 DLY---DTLSITQSVIFCNTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSG 304
Query: 531 QVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESSQ 590
VLI TDL +RG+D+ ++ +VIN+D+P E Y+HR+GR R GR+G ++ F+ +
Sbjct: 305 SSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFI--TDD 362
Query: 591 DRSIVR 596
DR I++
Sbjct: 363 DRRILK 368
>SPAC1093.05 [A] KOG0343 RNA Helicase
Length = 735
Score = 195 bits (496), Expect = 2e-49
Identities = 122/366 (33%), Positives = 194/366 (52%), Gaps = 22/366 (6%)
Query: 235 FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 294
F L L++P L + + + + IQ IP AL G+DI+ A TGSGKT AF++P+IE
Sbjct: 41 FAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIEN 100
Query: 295 LLYKP-AHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALK 353
L K + +V++PTRELAIQ + IG+ ++ + GL +GG N +++++ L
Sbjct: 101 LYRKKWTSLDGLGALVISPTRELAIQTFETLVKIGR-LHSFSAGLIIGGNNYKEEKERL- 158
Query: 354 TRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKRQ 413
+R +I++ TPGR + H+ + +F +++L++DEADR+L+ GF+ L I+S +P RQ
Sbjct: 159 SRMNILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLPVHRQ 218
Query: 414 TLLFSATMNXXXXXXXXXXXXXP--VRIMIDPPKQAADKLTQEFIRIRKRDHL------- 464
T+LFSAT P + + + L Q ++ + + L
Sbjct: 219 TMLFSATQTKSVKDLARLSLQNPDFISVHENDTSSTPSNLNQFYLTVPLTEKLDILFGFI 278
Query: 465 KPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSV 524
+ L ++ I L + Q R V ET ++R + LL LHG Q R +
Sbjct: 279 RTHLKFKTIVFLSSCKQVRFVY-----ETFRRMRPGISLL-----HLHGKQKQTTRTEVT 328
Query: 525 NNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTF 584
F S + VL CTD+ +RGLD P ++ VI D P+ + Y+HRVGRTAR R G ++
Sbjct: 329 AKFTSSRHVVLFCTDIVARGLDFPAVDWVIQLDAPEDVDTYIHRVGRTARYNRSGNALLL 388
Query: 585 VGESSQ 590
+ S +
Sbjct: 389 LLPSEE 394
>Hs4503531 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 407
Score = 195 bits (496), Expect = 2e-49
Identities = 124/363 (34%), Positives = 197/363 (54%), Gaps = 12/363 (3%)
Query: 235 FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 294
F+ ++L +L+G+ + G+ PS IQ AI + G D+IA A +G+GKTA F I I+++
Sbjct: 35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ 94
Query: 295 LLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKT 354
L T+ +VL PTRELA Q+ V +G ++ G T +GG N+R + Q L+
Sbjct: 95 L---EIEFKETQALVLAPTRELAQQIQKVILALGDYM-GATCHACIGGTNVRNEMQKLQA 150
Query: 355 R-PDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKRQ 413
P IV+ TPGR D L N S +++ V+DEAD ML GF++++ EI + + Q
Sbjct: 151 EAPHIVVGTPGRVFDML-NRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQ 209
Query: 414 TLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQLI 473
+ SATM P+RI++ + + + Q +I + +R+ K L L
Sbjct: 210 VVFASATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINV-EREEWKLDTLCDLY 268
Query: 474 RKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQVP 533
L T + V+F+ + L + V LHG + Q++R + F+S
Sbjct: 269 ETLTIT---QAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSR 325
Query: 534 VLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESSQDRS 593
VLI TDL +RG+D+ ++ +VIN+D+P E Y+HR+GR R GR+G ++ FV E +D+
Sbjct: 326 VLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTE--EDKR 383
Query: 594 IVR 596
I+R
Sbjct: 384 ILR 386
>CE26853 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 544
Score = 195 bits (496), Expect = 2e-49
Identities = 123/348 (35%), Positives = 202/348 (57%), Gaps = 14/348 (4%)
Query: 234 TFNSLS--LSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPI 291
TF SL ++ +LK + LG+T+ + IQ+ +I L GKD++A A TGSGKT AF++P
Sbjct: 67 TFASLEGKVNANLLKAVQGLGFTTMTEIQAKSIDPLLEGKDVLASAKTGSGKTLAFLLPA 126
Query: 292 IERLLYKP--AHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQE 349
IE LL+K T V++++PTREL++Q V + + N LT+GL +GG N ++
Sbjct: 127 IE-LLHKLNWKQHNGTGVIIVSPTRELSMQTYGVLSELLEGSN-LTYGLVMGGSNRSAEK 184
Query: 350 QALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIP 409
L I++ATPGR +DHL+N+ +F V +++ L+IDEADR+L+ GF+ E+Q+++ +P
Sbjct: 185 DKLAKGVSILVATPGRLLDHLQNTDNFLVRNMKCLIIDEADRILDIGFEIEMQQVLRHLP 244
Query: 410 SKRQTLLFSATMN-XXXXXXXXXXXXXPVRIMIDPPKQAA--DKLTQEFIRIRKRDHLKP 466
+RQ++LFSAT + PVR+ + + A + L Q +I L
Sbjct: 245 KQRQSMLFSATHSPKVDELVKLALHSNPVRVSVHEKAEEATVEGLQQGYIVAPSDKRL-- 302
Query: 467 ALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNN 526
LL+ ++K K+++VF + + +L + + +HG Q++R +
Sbjct: 303 LLLFTFLKK---NKTKKVMVFFSSCNSVKFHHELLNYIDIPCMSIHGKQKQQKRTTTFFQ 359
Query: 527 FKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTAR 574
F + +L+CTD+A+RGLDIP ++ ++ +D Y+HRVGRTAR
Sbjct: 360 FCQAETGILLCTDVAARGLDIPAVDWIVQYDPTDEPREYIHRVGRTAR 407
>CE23832 [A] KOG0341 DEAD-box protein abstrakt
Length = 630
Score = 195 bits (496), Expect = 2e-49
Identities = 120/349 (34%), Positives = 193/349 (54%), Gaps = 17/349 (4%)
Query: 252 GYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAHIASTRV---- 307
G +P+ IQ IP+AL G+D+I A TGSGKT F++P++ L + + R
Sbjct: 209 GIVTPTAIQIQGIPVALSGRDMIGIASTGSGKTMTFVLPLVMFCLEQEMKLPFMRSEGPF 268
Query: 308 -VVLTPTRELAIQVADV----GKNIGKF-VNGLTFGLAVGGLNLRQQEQALKTRPDIVIA 361
+++ P+RELA Q+ D+ +GK + + GL +GG+ + +Q + ++ IV+A
Sbjct: 269 GLIIVPSRELARQIFDLIIEMFDALGKAGLPEMRAGLCIGGVPIGEQAKDVRDGIHIVVA 328
Query: 362 TPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKRQTLLFSATM 421
TPGR D L +++ LV+DEADRML+ GF++E++ I ++RQTLLFSATM
Sbjct: 329 TPGRLSDMLTKKI-INLEVCRYLVLDEADRMLDMGFEDEIKSIFYFFKAQRQTLLFSATM 387
Query: 422 NXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQLIRKLDNTSQ 481
P+ + + A+ + QE +R + L +++ L TS
Sbjct: 388 PRKIQFFAKSALVKPIVVNVGRAGAASLNVLQELEFVRSENKL-----VRVLECLQKTSP 442
Query: 482 KRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQVPVLICTDLA 541
K +++F +K + L + G++V +HG Q R + F+ + VL+ TD+A
Sbjct: 443 K-VLIFAEKKVDVDNIYEYLLVKGVEVASIHGGKDQSDRHAGIEAFRKNEKDVLVATDVA 501
Query: 542 SRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESSQ 590
S+GLD IE VINFDMP+ E Y+HR+GRT R+GR+G + TF+ + S+
Sbjct: 502 SKGLDFQGIEHVINFDMPEDIENYVHRIGRTGRSGRKGLATTFINKKSE 550
>At5g08610 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 827
Score = 195 bits (495), Expect = 2e-49
Identities = 118/392 (30%), Positives = 208/392 (52%), Gaps = 23/392 (5%)
Query: 235 FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 294
F+ LS LK + G+ + + +Q A +PI L GKD++A A TG+GKT AF++P IE
Sbjct: 361 FDQFPLSPLSLKAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEA 420
Query: 295 LLYKPAHIASTR-----VVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQE 349
++ P +R V+V+ PTRELA Q A + K+ + + +GG L ++
Sbjct: 421 VIKSPPASRDSRQPPIIVLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQ 480
Query: 350 QALKTRP-DIVIATPGRFIDHLRNSASFSVD--SVEILVIDEADRMLEEGFQEELQEIMS 406
+ ++T P I++ATPGR DH+ N++ F+ V++LV+DEAD +L+ GF+ +++ I++
Sbjct: 481 RRMQTNPCQILVATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIERIIA 540
Query: 407 LIPSKRQTLLFSATMNXXXXXXXXXXXXXP---VRIMIDPPKQAADKLTQEFIRIRKRDH 463
+P +RQT LFSAT+ + + + + K+TQ ++ H
Sbjct: 541 AVPKQRQTFLFSATVPEEVRQICHVALKRDHEFINCVQEGSGETHQKVTQMYMIASLDRH 600
Query: 464 LKPALLYQLIRK--LDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRL 521
+LL+ L+++ DN K +++F + +L L + V E+H Q R
Sbjct: 601 F--SLLHVLLKEHIADNVDYK-VIIFCTTAMVTRLVADLLSQLSLNVREIHSRKPQSYRT 657
Query: 522 QSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRS 581
+ + F+ + +L+ +D+++RG+D P + +V+ +P E Y+HR+GRT R G+EG
Sbjct: 658 RVSDEFRKSKAIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEG 717
Query: 582 VTFVG-------ESSQDRSIVRSAIRSVEENA 606
V + S +D I +S + ++ A
Sbjct: 718 VLLLAPWEEYFMSSVKDLPITKSPLPPIDPEA 749
>Hs4503529 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 406
Score = 194 bits (494), Expect = 3e-49
Identities = 118/358 (32%), Positives = 196/358 (53%), Gaps = 10/358 (2%)
Query: 234 TFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 293
+F+ ++LS +L+G+ + G+ PS IQ AI + G D+IA A +G+GKTA F I I++
Sbjct: 33 SFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQ 92
Query: 294 RLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALK 353
++ + +T+ +VL PTRELA Q+ V +G ++ G + +GG N+R + Q L+
Sbjct: 93 QI---ELDLKATQALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQ 148
Query: 354 TR-PDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKR 412
P I++ TPGR D L N S +++ V+DEAD ML GF++++ +I + S
Sbjct: 149 MEAPHIIVGTPGRVFDML-NRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNT 207
Query: 413 QTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQL 472
Q +L SATM P+RI++ + + + Q +I + +R+ K L L
Sbjct: 208 QVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINV-EREEWKLDTLCDL 266
Query: 473 IRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQV 532
L T + V+F+ + L + V +HG + Q++R + F+S
Sbjct: 267 YETLTIT---QAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSS 323
Query: 533 PVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESSQ 590
VLI TDL +RG+D+ ++ +VIN+D+P E Y+HR+GR R GR+G ++ V E +
Sbjct: 324 RVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDK 381
>Hs10346129 [A] KOG0336 ATP-dependent RNA helicase
Length = 648
Score = 194 bits (494), Expect = 3e-49
Identities = 125/343 (36%), Positives = 191/343 (55%), Gaps = 9/343 (2%)
Query: 244 VLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAHIA 303
V++ + G+ P+PIQS A PI L G D+I A TG+GKT +++P L+ +P+
Sbjct: 253 VMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLVLQPSLKG 312
Query: 304 STR---VVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKTRPDIVI 360
++VLTPTRELA+QV G+ GL GG N +Q + LK DI+I
Sbjct: 313 QRNRPGMLVLTPTRELALQVE--GECCKYSYKGLRSVCVYGGGNRDEQIEELKKGVDIII 370
Query: 361 ATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKRQTLLFSAT 420
ATPGR D L+ S ++ ++ LV+DEAD+ML+ GF+ ++ +I+ + RQT++ SAT
Sbjct: 371 ATPGRLND-LQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTVMTSAT 429
Query: 421 MNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQLIRKLDNTS 480
P+ + + A ++ I + + K + + ++ + +T
Sbjct: 430 WPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEE-KWSHMQTFLQSMSSTD 488
Query: 481 QKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQVPVLICTDL 540
+++VFV+RK A L L L + V LHG Q R +++ NFK+ +V +LI TDL
Sbjct: 489 --KVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVRILIATDL 546
Query: 541 ASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVT 583
ASRGLD+ + V NFD P+ E Y+HR+GRT RAGR G S+T
Sbjct: 547 ASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSIT 589
>At1g55150 [A] KOG0331 ATP-dependent RNA helicase
Length = 501
Score = 194 bits (494), Expect = 3e-49
Identities = 124/356 (34%), Positives = 197/356 (54%), Gaps = 11/356 (3%)
Query: 233 KTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPII 292
K+F + VL+ + G+T P+PIQS P+A+ G+D+I A TGSGKT ++++P I
Sbjct: 99 KSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAI 158
Query: 293 ERLLYKP--AHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQ 350
+ +P AH V+VL PTRELA+Q+ G T + GG+ Q +
Sbjct: 159 VHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCI-YGGVPKGPQVR 217
Query: 351 ALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPS 410
L+ +IVIATPGR ID + S + ++ V LV+DEADRML+ GF ++++I+S I
Sbjct: 218 DLQKGVEIVIATPGRLID-MMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRP 276
Query: 411 KRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLY 470
RQTL +SAT P +++I A++ ++ + D + + Y
Sbjct: 277 DRQTLYWSATWPKEVEQLSKKFLYNPYKVIIGSSDLKANRAIRQIV-----DVISESQKY 331
Query: 471 QLIRKL--DNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFK 528
+ KL D RI+VF+ K+ ++ L + G +HG +Q +R ++ F+
Sbjct: 332 NKLVKLLEDIMDGSRILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFR 391
Query: 529 SLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTF 584
S + P++ TD+A+RGLD+ ++ VIN+D P + E Y+HR+GRT RAG +G + TF
Sbjct: 392 SGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTF 447
>At5g63630 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 522
Score = 193 bits (491), Expect = 7e-49
Identities = 122/400 (30%), Positives = 211/400 (52%), Gaps = 23/400 (5%)
Query: 224 SADAKKIVHKTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGK 283
+A+ + F+ LS LK + GY + + +Q A +PI L GKD++A A TG+GK
Sbjct: 45 NANDSYLTKTRFDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGK 104
Query: 284 TAAFMIPIIERLLYKPAHIASTR-----VVVLTPTRELAIQVADVGKNIGKFVNGLTFGL 338
T AF++P IE ++ P + +V+ PTRELA Q A + K+ + +
Sbjct: 105 TVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSIGVQV 164
Query: 339 AVGGLNLRQQEQALKTRP-DIVIATPGRFIDHLRNSASFS--VDSVEILVIDEADRMLEE 395
+GG L +++ ++T P I++ATPGR DH+ N+ F+ + V++LV+DEAD +L+
Sbjct: 165 VIGGTRLGLEQKRMQTNPCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDM 224
Query: 396 GFQEELQEIMSLIPSKRQTLLFSATMNXXXXXXXXXXXXXP---VRIMIDPPKQAADKLT 452
GF+++++ I+S +P +RQT LFSAT+ V + + + ++
Sbjct: 225 GFRKDIERIISAVPKERQTFLFSATVPEEVRQICLVALRRDHEFVNCVHEGTIETHQQVR 284
Query: 453 QEFIRIRKRDHLKPALLYQLIRK--LDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGE 510
Q + H +LLY L+R+ + N K ++VF + +LG L + V E
Sbjct: 285 QMHMIASLDRHF--SLLYTLLREHIMGNVDYK-VIVFCTTAMVTKLVADLLGELNLNVRE 341
Query: 511 LHGSLTQEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVG 570
+H Q R + N F+ + +L+ +D+++RG+D P + +V+ +PK E Y+HR+G
Sbjct: 342 IHSRKPQSYRTRVSNEFRKSKGLILVTSDVSARGVDYPDVTLVLQVGLPKDREQYIHRLG 401
Query: 571 RTARAGREGRSVTFVG-------ESSQDRSIVRSAIRSVE 603
RT R G+EG + + S +D I +S + S++
Sbjct: 402 RTGRKGKEGEGILLLAPWEEYFLSSLKDLPITKSPLPSID 441
>At1g20920 [A] KOG0334 RNA helicase
Length = 1166
Score = 193 bits (490), Expect = 9e-49
Identities = 129/362 (35%), Positives = 191/362 (52%), Gaps = 15/362 (4%)
Query: 233 KTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPII 292
K ++ L+ +L + L Y P PIQ+ A+PI + G+D I A TGSGKT F++P++
Sbjct: 529 KFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPML 588
Query: 293 ERLLYKPAHIASTRVV--VLTPTRELAIQVADVGKNIGKFVN--GLTFGLAVGGLNLRQQ 348
+ +P A + V+ PTREL V + +I KF G+ GG + QQ
Sbjct: 589 RHIKDQPPVEAGDGPIGLVMAPTREL---VQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQ 645
Query: 349 EQALKTRPDIVIATPGRFIDHLRNSAS--FSVDSVEILVIDEADRMLEEGFQEELQEIMS 406
LK +IV+ TPGR ID L S+ ++ V LV+DEADRM + GF+ ++ I+
Sbjct: 646 ISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQ 705
Query: 407 LIPSKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKP 466
I +RQT+LFSAT PV I + +TQ + +R
Sbjct: 706 NIRPERQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQ-LVEVRPESDR-- 762
Query: 467 ALLYQLIRKLDNTSQK-RIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVN 525
+L+ L S+K +I+VFV +E L + LHG Q R +++
Sbjct: 763 --FLRLLELLGEWSEKGKILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTIS 820
Query: 526 NFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFV 585
+FK+ +LI T +A+RGLD+ ++E+V+NFD P YE Y+HRVGRT RAGR+G +VTF+
Sbjct: 821 DFKNDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFI 880
Query: 586 GE 587
E
Sbjct: 881 SE 882
>YDR021w [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 192 bits (489), Expect = 1e-48
Identities = 118/365 (32%), Positives = 208/365 (56%), Gaps = 17/365 (4%)
Query: 227 AKKI-VHKTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTA 285
+KK+ V TF S++L +L+G+ S G+ +PS IQS AI + GKD+IA A +G+GKTA
Sbjct: 16 SKKLKVSSTFESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTA 75
Query: 286 AFMIPIIERLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNL 345
F I +++ + + + + ++L+PTRELA Q+ V KN+G ++N F + GG L
Sbjct: 76 TFTIGLLQAIDLRKKDL---QALILSPTRELASQIGQVVKNLGDYMNVNAFAIT-GGKTL 131
Query: 346 RQQEQALKTRP-DIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEE--GFQEELQ 402
+ + ++ V TPGR +D ++ +V++LV+DEAD +L E GF++++
Sbjct: 132 KDDLKKMQKHGCQAVSGTPGRVLDMIKKQM-LQTRNVQMLVLDEADELLSETLGFKQQIY 190
Query: 403 EIMSLIPSKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRD 462
+I + +P Q ++ SATMN PV+I++ + + + + Q + + K +
Sbjct: 191 DIFAKLPKNCQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEE 250
Query: 463 HLKPAL--LYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQR 520
L +Y D+ + + V+F K+ L L V +HG + QE+R
Sbjct: 251 WKFDTLCDIY------DSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEER 304
Query: 521 LQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGR 580
+ +N+F++ VLI TD+ +RG+D+ ++ +VIN+D+P+ E Y+HR+GR+ R GR+G
Sbjct: 305 DKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGV 364
Query: 581 SVTFV 585
++ F+
Sbjct: 365 AINFI 369
>CE18785 [A] KOG0331 ATP-dependent RNA helicase
Length = 561
Score = 192 bits (488), Expect = 2e-48
Identities = 121/344 (35%), Positives = 191/344 (55%), Gaps = 7/344 (2%)
Query: 253 YTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAHIA---STRVVV 309
+ P+ IQS + PIA+ G+DII+ A TGSGKT AFM+P + + K AH V+V
Sbjct: 149 FQKPTVIQSISWPIAMSGRDIISIAKTGSGKTLAFMLPALVHIT-KQAHRQRGEGPAVLV 207
Query: 310 LTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKTRPDIVIATPGRFIDH 369
L PTRELA QV +V + + GL GG + Q + L+ DIV+ATPGR +D
Sbjct: 208 LLPTRELAQQVQEVSIDFCHSL-GLKMTCLFGGASKGPQARDLERGVDIVVATPGRLLDF 266
Query: 370 LRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKRQTLLFSATMNXXXXXXX 429
L N + ++ LV+DEADRML+ GF+ ++++I+ I RQTL+FSAT
Sbjct: 267 LDNGTT-NMKKCSYLVLDEADRMLDMGFEPQIKKIIGQIRPDRQTLMFSATWPKEVRALA 325
Query: 430 XXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQLIRKLDNTSQKRIVVFVA 489
+ + + AA+ + + I + +H K A L +L+ + N + + ++FV
Sbjct: 326 SDFQKDAAFLNVGSLELAANHNITQVVDILE-EHAKQAKLMELLNHIMNQKECKTIIFVE 384
Query: 490 RKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQVPVLICTDLASRGLDIPK 549
K A +L + G +HG Q +R + FK+ + P+++ TD+A+RGLD+
Sbjct: 385 TKRKADELTRAMRRDGWPTLCIHGDKNQGERDWVLQEFKAGKTPIMLATDVAARGLDVDD 444
Query: 550 IEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESSQDRS 593
I+ VIN+D P E Y+HR+GRT R+ ++G + TF ++ ++
Sbjct: 445 IKFVINYDYPNNSEDYVHRIGRTGRSDKKGTAYTFFTHTNASKA 488
>At5g14610 [A] KOG0331 ATP-dependent RNA helicase
Length = 713
Score = 192 bits (488), Expect = 2e-48
Identities = 127/358 (35%), Positives = 202/358 (55%), Gaps = 14/358 (3%)
Query: 250 SLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIERL--LYKPAHIASTRV 307
S G+++PSPIQ+ + PIA+ +DI+A A TGSGKT ++IP L ++ + + T +
Sbjct: 246 SAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPT-I 304
Query: 308 VVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKTRPDIVIATPGRFI 367
+VL+PTRELA Q+ GK + ++ GG Q + ++ DIV+ATPGR
Sbjct: 305 LVLSPTRELATQIQVEALKFGKS-SKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLN 363
Query: 368 DHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKRQTLLFSATMNXXXXX 427
D L S+ V LV+DEADRML+ GF+ ++++I++ +P+KRQTL+++AT
Sbjct: 364 DILEMKR-ISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRK 422
Query: 428 XXXXXXXXPVRIMI-DPPKQAADKLTQEFIRIRKRDHLKPALLYQLIRKLDNTSQKRIVV 486
P ++ I + + A+K + I + K + L Q++R + S +I++
Sbjct: 423 IAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPME-KHSRLEQILRSQEPGS--KIII 479
Query: 487 FVARKETAHKL-RIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQVPVLICTDLASRGL 545
F + K +L R + G +HG +Q +R +N F+S + PVL+ TD+A+RGL
Sbjct: 480 FCSTKRMCDQLARNLTRTFG--AAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGL 537
Query: 546 DIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESSQDRSIVRSAIRSVE 603
D+ I VV+N+D P E Y+HR+GRT RAG G + TF G+ QD I+ +E
Sbjct: 538 DVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGD--QDAKHASDLIKILE 593
>At3g01540 [A] KOG0331 ATP-dependent RNA helicase
Length = 619
Score = 192 bits (488), Expect = 2e-48
Identities = 127/375 (33%), Positives = 207/375 (54%), Gaps = 16/375 (4%)
Query: 234 TFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 293
+F + +L+ + S G+++P+PIQ+ + PIA+ G+DI+A A TGSGKT ++IP
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFL 218
Query: 294 RL--LYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQA 351
L + + + T ++VL+PTRELA Q+ + G+ + ++ GG Q +
Sbjct: 219 HLQRIRNDSRMGPT-ILVLSPTRELATQIQEEAVKFGRS-SRISCTCLYGGAPKGPQLRD 276
Query: 352 LKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSK 411
L+ DIV+ATPGR D L S+ + LV+DEADRML+ GF+ ++++I+ IP+K
Sbjct: 277 LERGADIVVATPGRLNDILE-MRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTK 335
Query: 412 RQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQ--AADKLTQEFIRIRKRDHLKPALL 469
RQTL+++AT P ++ I + A +TQ + + K L
Sbjct: 336 RQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPME--KQRRL 393
Query: 470 YQLIRKLDNTSQKRIVVFVARKETAHKL-RIVLGLLGMQVGELHGSLTQEQRLQSVNNFK 528
Q++R + S ++++F + K +L R + G +HG +Q +R +N F+
Sbjct: 394 EQILRSQEPGS--KVIIFCSTKRMCDQLTRNLTRQFG--AAAIHGDKSQPERDNVLNQFR 449
Query: 529 SLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGES 588
S + PVL+ TD+A+RGLD+ I V+N+D P E Y+HR+GRT RAG G++ TF G+
Sbjct: 450 SGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGD- 508
Query: 589 SQDRSIVRSAIRSVE 603
QD I+ +E
Sbjct: 509 -QDSKHASDLIKILE 522
>7293060 [A] KOG0334 RNA helicase
Length = 1224
Score = 192 bits (488), Expect = 2e-48
Identities = 121/359 (33%), Positives = 194/359 (53%), Gaps = 13/359 (3%)
Query: 233 KTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPII 292
KT+ +S+ ++ L LG+ P+PIQ AIP + G+D+I A TGSGKT AF++P+
Sbjct: 510 KTWAQCGVSKKEMEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMF 569
Query: 293 ERLLYKPAHIASTRVV--VLTPTRELAIQVADVGKNIGKFVN--GLTFGLAVGGLNLRQQ 348
+L +P+ + ++ PTREL +Q+ GK+I KF GL GG + +Q
Sbjct: 570 RHILDQPSMEDGDGAIAIIMAPTRELCMQI---GKDIRKFSKSLGLRPVCVYGGTGISEQ 626
Query: 349 EQALKTRPDIVIATPGRFIDHLRNSAS--FSVDSVEILVIDEADRMLEEGFQEELQEIMS 406
LK +I++ TPGR ID L ++ ++ V +V+DEADRM + GF+ ++ I+
Sbjct: 627 IAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIID 686
Query: 407 LIPSKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKP 466
+ RQT++FSAT P+ +++ ++ Q + + D K
Sbjct: 687 NVRPDRQTVMFSATFPRQMEALARRILKKPIEVIVGGRSVVCKEVEQHVVILN--DDAKF 744
Query: 467 ALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNN 526
L +L+ I+VFV ++E A L L LHG + Q R ++ +
Sbjct: 745 FKLLELLGIYQEAGS--IIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIID 802
Query: 527 FKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFV 585
FKS +V +LI T +A+RGLD+ + +V+N+D+P YE Y+HR GRT RAG++G + TF+
Sbjct: 803 FKSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFI 861
>7299061 [A] KOG0335 ATP-dependent RNA helicase
Length = 798
Score = 192 bits (487), Expect = 2e-48
Identities = 120/379 (31%), Positives = 203/379 (52%), Gaps = 26/379 (6%)
Query: 234 TFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 293
+F+ + L+ + + Y P+P+Q AIPI + G+D++A A TGSGKTAAF++PI+
Sbjct: 296 SFDDVQLTEIIRNNVALARYDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPILN 355
Query: 294 RLLYKPAHIA---STRV----------VVLTPTRELAIQVADVGKNIGKFVNGLTFGLAV 340
++ Y+ H+ STR +VL PTRELA Q+ + K + + + +
Sbjct: 356 QM-YELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFA-YRSRMRPAVLY 413
Query: 341 GGLNLRQQEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEE 400
GG N +Q + L +++ATPGR D + ++++ LV+DEADRML+ GF+ +
Sbjct: 414 GGNNTSEQMRELDRGCHLIVATPGRLEDMITRG-KVGLENIRFLVLDEADRMLDMGFEPQ 472
Query: 401 LQEIMSLI----PSKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFI 456
++ I+ + +RQTL+FSAT + + + ++ +TQ +
Sbjct: 473 IRRIVEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTIL 532
Query: 457 RIRKRDHLKPALLYQLIRKL----DNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELH 512
+ + D K + L L+ + + T ++FV K+ A L L V +H
Sbjct: 533 WVYEPD--KRSYLLDLLSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIH 590
Query: 513 GSLTQEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRT 572
G TQ++R +++ F+S P+L+ T +A+RGLDIP ++ VINFD+P E Y+HR+GRT
Sbjct: 591 GDRTQKEREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRT 650
Query: 573 ARAGREGRSVTFVGESSQD 591
R G G + +F E +++
Sbjct: 651 GRMGNLGVATSFFNEKNRN 669
>CE03025 [A] KOG0329 ATP-dependent RNA helicase
Length = 425
Score = 191 bits (486), Expect = 3e-48
Identities = 108/363 (29%), Positives = 192/363 (52%), Gaps = 12/363 (3%)
Query: 235 FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 294
F L +L+ +G G+ PS +Q IP A+LG D++ A +G GKTA F+I +++
Sbjct: 43 FRDFLLKPEILRAIGDCGFEHPSEVQHECIPQAILGMDVVCQAKSGMGKTAVFVITTLQQ 102
Query: 295 LLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKT 354
L ++ VV + TRELA Q++ + K++ G+ + GG+ +++ E+ L
Sbjct: 103 LEPVDGEVS---VVCMCHTRELAFQISKEYERFSKYLPGVKVAVFFGGMAIKKDEERLAN 159
Query: 355 R-PDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEG-FQEELQEIMSLIPSKR 412
P IV+ TPGR + L S +D V+ V+DE D+M+ + + ++QEI+ + P ++
Sbjct: 160 DCPHIVVGTPGRMLA-LARSGKLKLDKVKYFVLDECDKMIGDADMRRDVQEIVKMTPQQK 218
Query: 413 QTLLFSATMNXXXXXXXXXXXXXPVRIMIDPP-KQAADKLTQEFIRIRKRDHLKPALLYQ 471
Q ++FSAT+ P+ + +D K L Q ++++++ + + +
Sbjct: 219 QVMMFSATLPKELRTVCKRFMQDPMEVYVDDEAKLTLHGLQQHYVKLKEAEKNR-----R 273
Query: 472 LIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQ 531
L+ LD ++V+FV + L +L +H + QE+RL FK Q
Sbjct: 274 LLNLLDALEFNQVVIFVKAVKRCEALHQLLTEQNFPSIAIHRQMAQEERLSRYQAFKDFQ 333
Query: 532 VPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESSQD 591
+L+ TDL RG+DI ++ +V N+DMP+ + YLHRV R R G +G ++TFV + +
Sbjct: 334 KRILVATDLFGRGMDIERVNIVFNYDMPEDSDSYLHRVARAGRFGTKGLAITFVSDENDA 393
Query: 592 RSI 594
+++
Sbjct: 394 KTL 396
>At1g72730 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 414
Score = 191 bits (486), Expect = 3e-48
Identities = 119/362 (32%), Positives = 197/362 (53%), Gaps = 11/362 (3%)
Query: 234 TFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 293
+F+++ L +L+G+ + G+ PS IQ I G D+I A +G+GKTA F +++
Sbjct: 42 SFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQ 101
Query: 294 RLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALK 353
+L + + +VL PTRELA Q+ V + +G ++ G+ VGG ++R+ ++ L+
Sbjct: 102 QL---DISLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKAQACVGGTSVREDQRVLQ 157
Query: 354 TRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKRQ 413
+ +V+ TPGR D LR S D++++ V+DEAD ML GF++++ +I L+PSK Q
Sbjct: 158 SGVHVVVGTPGRVFDLLRRQ-SLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQ 216
Query: 414 TLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQLI 473
+FSATM PVRI++ + + + Q ++ + K + K L L
Sbjct: 217 VGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEW-KLETLCDLY 275
Query: 474 RKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQVP 533
L T V+FV + L + V HG + Q R + F+S
Sbjct: 276 ETLAITQS---VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSR 332
Query: 534 VLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESSQDRS 593
VLI TDL +RG+D+ ++ +VINFD+P E YLHR+GR+ R GR+G ++ F+ +S+D
Sbjct: 333 VLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFM--TSEDER 390
Query: 594 IV 595
++
Sbjct: 391 MM 392
>CE26887 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 730
Score = 191 bits (485), Expect = 4e-48
Identities = 116/373 (31%), Positives = 192/373 (51%), Gaps = 38/373 (10%)
Query: 244 VLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAHIA 303
V + + +GY P+PIQ AIPI L +D+I A TGSGKTAAF++P++ + P
Sbjct: 312 VYQAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLVWITSLPKMER 371
Query: 304 STR------VVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKTRPD 357
+++ PTRELA Q+ + GK + G+ +GG + Q L+ +
Sbjct: 372 QEHRDLGPYAIIMAPTRELAQQIEEETNKFGKLL-GIKTVSVIGGASREDQGMKLRMGVE 430
Query: 358 IVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSK------ 411
+VIATPGR +D L N ++ +++DEADRML+ GF+ ++Q+++ +P
Sbjct: 431 VVIATPGRLLDVLENRYLL-LNQCTYVILDEADRMLDMGFEPDVQKVLEYMPDTNMKKDT 489
Query: 412 -------------------RQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLT 452
RQT++F+ATM+ P + I + +++
Sbjct: 490 DEFDNEEALMKGFSTREKYRQTVMFTATMSSAIERLARQYLRRPAVVHIGSAGKPTERVE 549
Query: 453 QEFIRIRKRDHLKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELH 512
Q + + K +L+ L++ Q I++FV +K+ A L L LG + LH
Sbjct: 550 QVVYMVPEDRKRK-----KLVEVLESQFQPPIIIFVNQKKGADMLSKGLTKLGFKPTVLH 604
Query: 513 GSLTQEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRT 572
G Q+QR ++ K +L+ TD+A RG+D+ + +V+N+DM K+ E Y HR+GRT
Sbjct: 605 GGKGQDQREYALQALKEGTSDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHRIGRT 664
Query: 573 ARAGREGRSVTFV 585
RAG+ G+++TF+
Sbjct: 665 GRAGKHGKAITFL 677
>CE24878 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 769
Score = 191 bits (485), Expect = 4e-48
Identities = 116/373 (31%), Positives = 192/373 (51%), Gaps = 38/373 (10%)
Query: 244 VLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAHIA 303
V + + +GY P+PIQ AIPI L +D+I A TGSGKTAAF++P++ + P
Sbjct: 312 VYQAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLVWITSLPKMER 371
Query: 304 STR------VVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKTRPD 357
+++ PTRELA Q+ + GK + G+ +GG + Q L+ +
Sbjct: 372 QEHRDLGPYAIIMAPTRELAQQIEEETNKFGKLL-GIKTVSVIGGASREDQGMKLRMGVE 430
Query: 358 IVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSK------ 411
+VIATPGR +D L N ++ +++DEADRML+ GF+ ++Q+++ +P
Sbjct: 431 VVIATPGRLLDVLENRYLL-LNQCTYVILDEADRMLDMGFEPDVQKVLEYMPDTNMKKDT 489
Query: 412 -------------------RQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLT 452
RQT++F+ATM+ P + I + +++
Sbjct: 490 DEFDNEEALMKGFSTREKYRQTVMFTATMSSAIERLARQYLRRPAVVHIGSAGKPTERVE 549
Query: 453 QEFIRIRKRDHLKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELH 512
Q + + K +L+ L++ Q I++FV +K+ A L L LG + LH
Sbjct: 550 QVVYMVPEDRKRK-----KLVEVLESQFQPPIIIFVNQKKGADMLSKGLTKLGFKPTVLH 604
Query: 513 GSLTQEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRT 572
G Q+QR ++ K +L+ TD+A RG+D+ + +V+N+DM K+ E Y HR+GRT
Sbjct: 605 GGKGQDQREYALQALKEGTSDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHRIGRT 664
Query: 573 ARAGREGRSVTFV 585
RAG+ G+++TF+
Sbjct: 665 GRAGKHGKAITFL 677
>SPAC1F5.10 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 394
Score = 190 bits (483), Expect = 6e-48
Identities = 114/365 (31%), Positives = 200/365 (54%), Gaps = 15/365 (4%)
Query: 234 TFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 293
+F ++L +L+G+ + GY +PS +QS AI G+D+IA A +G+GKTA F I I++
Sbjct: 22 SFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQ 81
Query: 294 RLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALK 353
+ + T+ ++L+PTRELA+Q+ +V +G +N + +GG ++ + L
Sbjct: 82 SI---DLSVRDTQALILSPTRELAVQIQNVVLALGDHMN-VQCHACIGGTSVGNDIKKLD 137
Query: 354 TRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKRQ 413
+V TPGR D +R + +V++L++DEAD +L +GF+E++ +I +P Q
Sbjct: 138 YGQHVVSGTPGRVTDMIRRR-NLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPPGTQ 196
Query: 414 TLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPAL--LYQ 471
++ SAT+ PVRI++ + + L Q FI + K + L LY
Sbjct: 197 VVVVSATLPQDVLEMTNKFTTNPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLY- 255
Query: 472 LIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQ 531
D + + V+F + L + V +HG + Q++R + +F+
Sbjct: 256 -----DTLTITQAVIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQDFRQGN 310
Query: 532 VPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESSQD 591
VLICTD+ +RG+D+ ++ +VIN+D+P E Y+HR+GR+ R GR+G ++ FV +++D
Sbjct: 311 SRVLICTDIWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFV--TNED 368
Query: 592 RSIVR 596
I+R
Sbjct: 369 VRILR 373
>At3g61240 [A] KOG0326 ATP-dependent RNA helicase
Length = 498
Score = 190 bits (483), Expect = 6e-48
Identities = 123/362 (33%), Positives = 183/362 (49%), Gaps = 11/362 (3%)
Query: 224 SADAKKIVHKTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGK 283
+AD F L R +LKG+ G+ PSPIQ +IPIAL G DI+A A G+GK
Sbjct: 115 TADVTATKGNEFEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
Query: 284 TAAFMIPIIERLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGL 343
T AF IP++E++ + + ++L PTRELA+Q + V K + K++N + + GG
Sbjct: 175 TGAFCIPVLEKI---DPNNNVIQAMILVPTRELALQTSQVCKELSKYLN-IQVMVTTGGT 230
Query: 344 NLRQQEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQE 403
+LR L +++ TPGR +D + D +LV+DEAD++L FQ L+E
Sbjct: 231 SLRDDIMRLHQPVHLLVGTPGRILDLTKKGVCVLKDCA-MLVMDEADKLLSAEFQPSLEE 289
Query: 404 IMSLIPSKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDH 463
++ +P RQ L+FSAT P I + + +TQ + + +R
Sbjct: 290 LIQFLPQNRQFLMFSATFPVTVKAFKDRHLRKPYVINL-MDQLTLMGVTQYYAFVEERQ- 347
Query: 464 LKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQS 523
K L L KL ++F L + LG +H + Q+ R +
Sbjct: 348 -KVHCLNTLFSKLQINQS---IIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRV 403
Query: 524 VNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVT 583
+ F++ L+CTDL +RG+DI + VVINFD P+T E YLHRVGR+ R G G +V
Sbjct: 404 FHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVN 463
Query: 584 FV 585
V
Sbjct: 464 LV 465
>Hs7662318 [A] KOG0334 RNA helicase
Length = 1032
Score = 190 bits (482), Expect = 8e-48
Identities = 116/359 (32%), Positives = 187/359 (51%), Gaps = 9/359 (2%)
Query: 233 KTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPII 292
K++ +S +L L GY P+PIQ+ AIP + G+D+I A TGSGKT AF++P+
Sbjct: 372 KSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMF 431
Query: 293 ERLLYKPA--HIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQ 350
++ + + V++TPTRELA+Q+ K K + GL GG + +Q
Sbjct: 432 RHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTL-GLRVVCVYGGTGISEQIA 490
Query: 351 ALKTRPDIVIATPGRFIDHLRNSAS--FSVDSVEILVIDEADRMLEEGFQEELQEIMSLI 408
LK +I++ TPGR ID L ++ ++ V +V+DEADRM + GF+ ++ I+ +
Sbjct: 491 ELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNV 550
Query: 409 PSKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPAL 468
RQT++FSAT P+ + + + Q+ I I + K
Sbjct: 551 RPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEK--KFLK 608
Query: 469 LYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFK 528
L +L+ + +++FV ++E A L L LHG + Q R +N+FK
Sbjct: 609 LLELLGHYQESGS--VIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFK 666
Query: 529 SLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGE 587
+ +L+ T +A+RGLD+ + +V+N+ P YE Y+HR GRT RAG +G + TF+ E
Sbjct: 667 NGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITE 725
>ECU08g1080 [A] KOG0331 ATP-dependent RNA helicase
Length = 495
Score = 190 bits (482), Expect = 8e-48
Identities = 126/371 (33%), Positives = 197/371 (52%), Gaps = 19/371 (5%)
Query: 235 FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIP-IIE 293
F S V+ L G++ P+ IQ P+AL G+D++ A TGSGKT +F++P ++
Sbjct: 89 FEEAGFSSEVVSSLVEKGFSEPTAIQGQGWPMALSGRDMVGIAQTGSGKTLSFILPALVH 148
Query: 294 RLLYKPAHIASTRVV-VLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQAL 352
+P +V VL PTREL +Q+ V N L GG + + Q +AL
Sbjct: 149 AKDQQPLRRGDGPIVLVLAPTRELVMQIKKVVDEFCGMFN-LRSTAVYGGASSQPQIRAL 207
Query: 353 KTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKR 412
++VIATPGR ID L + + V LV+DEADRML+ GF+ +L++I+ + R
Sbjct: 208 HEGAEVVIATPGRLID-LHDQGHAPLSRVTFLVLDEADRMLDMGFEPQLRKIIPKTNANR 266
Query: 413 QTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRI----RKRDHLKPAL 468
QTL++SAT +++++ + + ++ + + K D
Sbjct: 267 QTLMWSATWPREVRGLAESYMNEYIQVVVGNEELKTNSKIKQIVEVCSGREKED------ 320
Query: 469 LYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFK 528
+LI LDN +++VF K T L VL G LHG +Q R + +++F+
Sbjct: 321 --KLIGVLDNFKGDKVIVFCNMKRTCDDLEYVLNRSGYGAAALHGDKSQNIRDKVLDDFR 378
Query: 529 SLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAG-REGRSVTF--V 585
S + P+LI T++A RGLD+ +++VINFD P + E Y+HR+GRTAR +EG S TF V
Sbjct: 379 SGRRPILIATEVAGRGLDVNDVKLVINFDFPGSCEDYVHRIGRTARGNTKEGISHTFFTV 438
Query: 586 GESSQDRSIVR 596
G+ + R ++R
Sbjct: 439 GDKANARELIR 449
>Hs4759278 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 820
Score = 189 bits (481), Expect = 1e-47
Identities = 127/408 (31%), Positives = 207/408 (50%), Gaps = 41/408 (10%)
Query: 233 KTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPII 292
+++ SL +L+ + GY P+PIQ AIPI L +DII A TGSGKTAAF+IP++
Sbjct: 391 RSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLL 450
Query: 293 ERLLYKPA------HIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLR 346
+ P ++L PTRELA Q+ + GK + G+ +GG++
Sbjct: 451 VWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPL-GIRTVAVIGGISRE 509
Query: 347 QQEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMS 406
Q L+ +IVIATPGR ID L N + +V+DEADRM++ GF+ ++Q+I+
Sbjct: 510 DQGFRLRMGCEIVIATPGRLIDVLENRY-LVLSRCTYVVLDEADRMIDMGFEPDVQKILE 568
Query: 407 LIPSK--------------------------RQTLLFSATMNXXXXXXXXXXXXXPVRIM 440
+P RQT++F+ATM P +
Sbjct: 569 HMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVY 628
Query: 441 IDPPKQAADKLTQEFIRIRKRDHLKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIV 500
I + +++ Q+ + + + K +L+ L+ I++FV +K+ L
Sbjct: 629 IGSAGKPHERVEQKVFLMSESEKRK-----KLLAILEQGFDPPIIIFVNQKKGCDVLAKS 683
Query: 501 LGLLGMQVGELHGSLTQEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPK 560
L +G LHG QEQR +++N K+ +L+ TD+A RG+DI + +V+N+DM K
Sbjct: 684 LEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAK 743
Query: 561 TYEIYLHRVGRTARAGREGRSVTFVGESSQDRSIVRSAIRSVEENAES 608
E Y+HR+GRT RAG+ G ++TF+ + +D ++ +++ E+ S
Sbjct: 744 NIEDYIHRIGRTGRAGKSGVAITFL--TKEDSAVFYELKQAILESPVS 789
>Hs21040371 [A] KOG0329 ATP-dependent RNA helicase
Length = 427
Score = 189 bits (481), Expect = 1e-47
Identities = 112/358 (31%), Positives = 195/358 (54%), Gaps = 12/358 (3%)
Query: 235 FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 294
F L +L+ + G+ PS +Q IP A+LG D++ A +G GKTA F++ +++
Sbjct: 46 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 105
Query: 295 LLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKT 354
+ +P + V+V+ TRELA Q++ + K++ + + GGL++++ E+ LK
Sbjct: 106 I--EPVN-GQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKK 162
Query: 355 R-PDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEE-GFQEELQEIMSLIPSKR 412
P +V+ TPGR + +RN SFS+ +V+ V+DE D+MLE+ + ++QEI L P ++
Sbjct: 163 NCPHVVVGTPGRILALVRNR-SFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEK 221
Query: 413 QTLLFSATMNXXXXXXXXXXXXXPVRIMIDPP-KQAADKLTQEFIRIRKRDHLKPALLYQ 471
Q ++FSAT++ P+ + +D K L Q +++++ D K L+
Sbjct: 222 QCMMFSATLSKDIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLK--DSEKNRKLFD 279
Query: 472 LIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQ 531
L LD ++++FV + L +L +H + QE+RL FK Q
Sbjct: 280 L---LDVLEFNQVIIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQ 336
Query: 532 VPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESS 589
+L+ T+L RG+DI ++ +V N+DMP+ + YLHRV R R G +G ++TFV + +
Sbjct: 337 RRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 394
>Hs17474597 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 820
Score = 189 bits (481), Expect = 1e-47
Identities = 127/408 (31%), Positives = 207/408 (50%), Gaps = 41/408 (10%)
Query: 233 KTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPII 292
+++ SL +L+ + GY P+PIQ AIPI L +DII A TGSGKTAAF+IP++
Sbjct: 391 RSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLL 450
Query: 293 ERLLYKPA------HIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLR 346
+ P ++L PTRELA Q+ + GK + G+ +GG++
Sbjct: 451 VWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPL-GIRTVAVIGGISRE 509
Query: 347 QQEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMS 406
Q L+ +IVIATPGR ID L N + +V+DEADRM++ GF+ ++Q+I+
Sbjct: 510 DQGFRLRMGCEIVIATPGRLIDVLENRY-LVLSRCTYVVLDEADRMIDMGFEPDVQKILE 568
Query: 407 LIPSK--------------------------RQTLLFSATMNXXXXXXXXXXXXXPVRIM 440
+P RQT++F+ATM P +
Sbjct: 569 HMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVY 628
Query: 441 IDPPKQAADKLTQEFIRIRKRDHLKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIV 500
I + +++ Q+ + + + K +L+ L+ I++FV +K+ L
Sbjct: 629 IGSAGKPHERVEQKVFLMSESEKRK-----KLLAILEQGFDPPIIIFVNQKKGCDVLAKS 683
Query: 501 LGLLGMQVGELHGSLTQEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPK 560
L +G LHG QEQR +++N K+ +L+ TD+A RG+DI + +V+N+DM K
Sbjct: 684 LEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAK 743
Query: 561 TYEIYLHRVGRTARAGREGRSVTFVGESSQDRSIVRSAIRSVEENAES 608
E Y+HR+GRT RAG+ G ++TF+ + +D ++ +++ E+ S
Sbjct: 744 NIEDYIHRIGRTGRAGKSGVAITFL--TKEDSAVFYELKQAILESPVS 789
>7293369 [A] KOG0343 RNA Helicase
Length = 805
Score = 189 bits (480), Expect = 1e-47
Identities = 128/386 (33%), Positives = 199/386 (51%), Gaps = 34/386 (8%)
Query: 233 KTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPII 292
K F LS+ K L + P+ +Q +I AL GKD++ A+TGSGKT AF+IP++
Sbjct: 72 KKFAQFPLSKKTQKALAESKFVHPTQVQRDSIGPALQGKDVLGAAITGSGKTLAFLIPVL 131
Query: 293 ERL-LYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQA 351
E L + K + ++++PTRELA Q+ + K +GK + + GL +GG NL+ +
Sbjct: 132 EHLFMNKWSRTDGVGAIIISPTRELAYQIFETLKKVGKH-HDFSAGLIIGGKNLKFE--- 187
Query: 352 LKTRPD---IVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLI 408
+TR D I+I TPGR + H+ + F+ ++E+LV+DEADR L+ GFQ+ L I+
Sbjct: 188 -RTRMDQCNILICTPGRLLQHMDENPLFNTSTMEMLVLDEADRCLDMGFQKTLNSIIENF 246
Query: 409 PSKRQTLLFSATMNXXXXXXXXXXXXXPVRIMI------DPPKQAADK------------ 450
P RQTLLFSAT PV + + P + K
Sbjct: 247 PPVRQTLLFSATQTNTVQDLARLNLKDPVYVGYGGATPREEPSASTKKTPNTAVLAVPEL 306
Query: 451 LTQEFIRIRKRDHLKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLL--GMQV 508
L Q ++ + D K +L+ I+ N +++I+VFVA + A L + L G +
Sbjct: 307 LQQSYVVLNLED--KITMLWSFIK---NHLKQKIIVFVASCKQAKYLYEIFCKLRPGSPL 361
Query: 509 GELHGSLTQEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHR 568
L+G+L Q++R+ +F V+ TD+ASRGLD P + V+ D P+ Y+HR
Sbjct: 362 LALYGTLHQDRRIAIYEDFLRKSHVVMFSTDVASRGLDFPAVNWVVQLDCPEDVSQYIHR 421
Query: 569 VGRTARAGREGRSVTFVGESSQDRSI 594
GR+AR G + + S ++ I
Sbjct: 422 AGRSARNKTRGECLLVLTPSEEEYMI 447
>CE23814 [A] KOG0340 ATP-dependent RNA helicase
Length = 696
Score = 189 bits (479), Expect = 2e-47
Identities = 117/316 (37%), Positives = 179/316 (56%), Gaps = 14/316 (4%)
Query: 277 AVTGSGKTAAFMIPIIERLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTF 336
A TG+GKT AF IPI+++L P I + ++LTPTRELA Q+A+ +GK + L
Sbjct: 190 ARTGTGKTLAFAIPILQKLSVDPYGIYA---LILTPTRELAFQIAEQFTALGKPIT-LKC 245
Query: 337 GLAVGGLNLRQQEQALKTRPDIVIATPGRFIDHLRNSASFSVD---SVEILVIDEADRML 393
+ VGG +L Q + L RP +V+ATPGR D + + ++ V+DEADRML
Sbjct: 246 SVIVGGRSLIHQARELSERPHVVVATPGRLADLIESDPDTIAKVFKKIQFFVLDEADRML 305
Query: 394 EEGFQEELQEIMSLIPSKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQ---AADK 450
E + ++L+ I I KRQTLL SAT+ P D K D+
Sbjct: 306 EGQYNDQLKPIFESISEKRQTLLLSATITNNINMLHRVSTRKPY-FFEDKGKDDESTVDR 364
Query: 451 LTQEFIRIRKRDHLKPALLYQLIRKLDNTSQKR-IVVFVARKETAHKLRIVLGLLGMQVG 509
L Q+++ +K A L +++ + K +++F L + LG +VG
Sbjct: 365 LEQKYVVCPVA--VKDAYLVYVVKNYSEKNPKSSVMIFAQTCRECQALAYMFEGLGFRVG 422
Query: 510 ELHGSLTQEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRV 569
LH + Q+QRL +++ F+S + V+ICTD+ASRGLDIP +++V+N ++P+ + Y+HRV
Sbjct: 423 SLHSQIPQKQRLAALSAFRSKTLQVIICTDVASRGLDIPHVDLVVNHNVPQCPKTYIHRV 482
Query: 570 GRTARAGREGRSVTFV 585
GR+ARAGR G +++FV
Sbjct: 483 GRSARAGRFGSALSFV 498
>CE17559 [A] KOG0339 ATP-dependent RNA helicase
Length = 811
Score = 189 bits (479), Expect = 2e-47
Identities = 123/373 (32%), Positives = 200/373 (52%), Gaps = 11/373 (2%)
Query: 234 TFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 293
+F S + +++ + Y P+PIQ+ AIP AL G+D++ A TGSGKTAA++ P I
Sbjct: 266 SFAHFSFDKLLMEAIRKSEYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAYLWPAIV 325
Query: 294 RLLYKPAHIASTR--VVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQA 351
++ +P A V++ PTRELAIQV K K N GG Q +
Sbjct: 326 HIMDQPDLKAGEGPVAVIVVPTRELAIQVFQEAKKFCKVYNINPICAYGGGSKWEQSNEL 385
Query: 352 LKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSK 411
++V+ TPGR ID ++ A+ + + LV DEADRM + GF+ +++ I +
Sbjct: 386 QNEGAEMVVCTPGRIIDLVKMGATNFLRTT-FLVFDEADRMFDMGFEAQVKSISDHVRPD 444
Query: 412 RQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQ 471
RQ L+FSAT PVRI+ +A + Q+ ++ +D L+
Sbjct: 445 RQCLMFSATFKQKVERLARDALVDPVRIVQGEVGEANADIEQKVFVMQNQD----VKLHW 500
Query: 472 LIRKL-DNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSL 530
LIR L + S ++++FV +K + + L + + LHG + Q +R +++ F+
Sbjct: 501 LIRNLVEFASLGKVLIFVTKKLDSEDVAKKLKMKDFDIVLLHGDMLQAERNENLLKFRK- 559
Query: 531 QVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESSQ 590
+ +L+ TD+A+RGLDI +I VINFDM + + ++HR+GRT RAG +G + T V E +
Sbjct: 560 KSQILVATDVAARGLDISEIRTVINFDMARDIDTHVHRIGRTGRAGHKGTAYTLVTE--K 617
Query: 591 DRSIVRSAIRSVE 603
D +V ++++E
Sbjct: 618 DIEMVGHLVKNLE 630
>7298459 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 802
Score = 189 bits (479), Expect = 2e-47
Identities = 125/382 (32%), Positives = 198/382 (51%), Gaps = 38/382 (9%)
Query: 233 KTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPII 292
+++N + ++ + +GY P+PIQ AIPI L +DII A TGSGKT AF+IP++
Sbjct: 394 RSWNESGFPKEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLL 453
Query: 293 ERLLYKPAHIASTRV------VVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLR 346
+ P V +++ PTRELA Q+ + G+ + G+ + VGGL+
Sbjct: 454 SWIQSLPKIERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPL-GIRTVVVVGGLSRE 512
Query: 347 QQEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMS 406
+Q L+ +IVIATPGR ID L N ++ +V+DEADRM++ GF+ ++Q+I+
Sbjct: 513 EQGFRLRLGCEIVIATPGRLIDVLENRY-LVLNQCTYIVLDEADRMIDMGFEPDVQKILE 571
Query: 407 LIP-------------------------SKRQTLLFSATMNXXXXXXXXXXXXXPVRIMI 441
+P RQT++F+ATM P + I
Sbjct: 572 YMPVTNLKPDTEEAEDETKLMENFYTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYI 631
Query: 442 DPPKQAADKLTQEFIRIRKRDHLKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVL 501
+ ++ T++ + + + + L+ L RK+D +++FV +K+ A L L
Sbjct: 632 GSVGKPTER-TEQIVYMMGENDKRKKLMEILSRKIDPP----VIIFVNQKKGADVLAKGL 686
Query: 502 GLLGMQVGELHGSLTQEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKT 561
LG LHG QEQR ++ KS +L+ TD+A RG+DI + +VIN+DM KT
Sbjct: 687 EKLGYNSCTLHGGKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKT 746
Query: 562 YEIYLHRVGRTARAGREGRSVT 583
E Y HR+GRT RAG+ G +++
Sbjct: 747 IEDYTHRIGRTGRAGKTGCAIS 768
>SPAC1006.07 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 392
Score = 188 bits (478), Expect = 2e-47
Identities = 111/354 (31%), Positives = 190/354 (53%), Gaps = 13/354 (3%)
Query: 234 TFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 293
TF+ ++L +L+G+ + G+ PS IQ AI L +D++A A +G+GKTA F I +++
Sbjct: 20 TFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQ 79
Query: 294 RLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALK 353
++ + + ++L PTRELA Q+ V +G +N + +GG +R AL+
Sbjct: 80 KI---DTSLKQCQALILAPTRELAQQIQKVVVALGDLMN-VECHACIGGTLVRDDMAALQ 135
Query: 354 TRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKRQ 413
+V+ TPGR D ++ A D+V++ V+DEAD ML GF++++ +I L+P Q
Sbjct: 136 AGVHVVVGTPGRVHDMIQRRA-LPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLLPPTAQ 194
Query: 414 TLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPAL--LYQ 471
+L SATM P+RI++ + + + Q ++ + K + L LY+
Sbjct: 195 VVLLSATMPQDVLEVTTKFMRDPIRILVKKDELTLEGIKQFYVAVEKEEWKLDTLCDLYE 254
Query: 472 LIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQ 531
+ + + V+F + L L V +HG + Q QR ++ F++
Sbjct: 255 TV------TVTQAVIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTGS 308
Query: 532 VPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFV 585
+LI TDL +RG+D+ ++ +VIN+D+P E Y+HR+GR R GR+G S+ FV
Sbjct: 309 SRILITTDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVSINFV 362
>At5g54910 [A] KOG0343 RNA Helicase
Length = 739
Score = 187 bits (476), Expect = 4e-47
Identities = 126/368 (34%), Positives = 194/368 (52%), Gaps = 21/368 (5%)
Query: 233 KTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPII 292
+ F L +S +GL Y + +QSAAIP AL G+DI+ A TGSGKT AF+IPI+
Sbjct: 71 RKFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPIL 130
Query: 293 ERL---LYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQE 349
E+L + P ++++PTRELA Q V +GKF + + GL +GG E
Sbjct: 131 EKLHRERWSPED--GVGCIIISPTRELAAQTFGVLNKVGKF-HKFSAGLLIGGREGVDVE 187
Query: 350 QALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIP 409
+ +I++ PGR + H+ + +F ++IL++DEADR+L+ F+ +L I+S +P
Sbjct: 188 KERVHEMNILVCAPGRLLQHMDETPNFECPQLQILILDEADRVLDSAFKGQLDPIISQLP 247
Query: 410 SKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKL----TQEFIRIRKRDHLK 465
RQTLLFSAT P I + A T + + K K
Sbjct: 248 KHRQTLLFSATQTKKVKDLARLSLRDPEYISVHAEAVTATPTSLMQTVMIVPVEK----K 303
Query: 466 PALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLL--GMQVGELHGSLTQEQRLQS 523
+L+ I+ N+ RI+VF++ K+ + L G+ + LHG ++QE+R+
Sbjct: 304 LDMLWSFIKTHLNS---RILVFLSTKKQVKFVHEAFNKLRPGIPLKSLHGKMSQEKRMGV 360
Query: 524 VNNFKSLQVPVLICTDLASRGLDIPK-IEVVINFDMPKTYEIYLHRVGRTARAGREGRSV 582
+ F Q VL CTD+ +RGLD K ++ V+ D P+ Y+HRVGRTAR +G+S+
Sbjct: 361 YSQFIERQ-SVLFCTDVLARGLDFDKAVDWVVQVDCPEDVASYIHRVGRTARFYTQGKSL 419
Query: 583 TFVGESSQ 590
F+ S +
Sbjct: 420 LFLTPSEE 427
>At3g22330 [A] KOG0331 ATP-dependent RNA helicase
Length = 620
Score = 187 bits (475), Expect = 5e-47
Identities = 122/378 (32%), Positives = 205/378 (53%), Gaps = 20/378 (5%)
Query: 236 NSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIERL 295
+ L +S ++K L S G PIQ A + A+ G+D+I A TG+GKT AF IPII+++
Sbjct: 107 SELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKI 166
Query: 296 LYKPAHIASTR---VVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQAL 352
+ A R +VL PTRELA QV K + L GG + QQ + L
Sbjct: 167 IKYNAKHGRGRNPLCLVLAPTRELARQVE---KEFRESAPSLDTICLYGGTPIGQQMRQL 223
Query: 353 KTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKR 412
D+ + TPGR ID ++ A ++ V+ +V+DEAD+ML+ GF E+++ I+ +P KR
Sbjct: 224 DYGVDVAVGTPGRVIDLMKRGA-LNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKR 282
Query: 413 QTLLFSATMNXXXXXXXXXXXXXPVRIMI--DPPKQAADKLTQEFIRIRKRDHLKPALLY 470
Q+++FSATM P+ + + D ++ AD +T I + + +++
Sbjct: 283 QSMMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLADGITT--YSIIADSYGRASIIG 340
Query: 471 QLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSL 530
L+ ++ + +VF K A +L L + LHG ++Q QR +++ F+
Sbjct: 341 PLVT--EHAKGGKCIVFTQTKRDADRLSYALAR-SFKCEALHGDISQSQRERTLAGFRDG 397
Query: 531 QVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESSQ 590
+L+ TD+A+RGLD+P ++++I++++P E ++HR GRT RAG++G ++ SQ
Sbjct: 398 HFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIY---SQ 454
Query: 591 DRSIVRSAIRSVEENAES 608
D+S A++ +E S
Sbjct: 455 DQS---RAVKIIEREVGS 469
>YFL002c [A] KOG0345 ATP-dependent RNA helicase
Length = 606
Score = 186 bits (473), Expect = 9e-47
Identities = 120/381 (31%), Positives = 203/381 (52%), Gaps = 33/381 (8%)
Query: 247 GLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLL--------YK 298
GL +G+ + +P+Q++ IP+ KD++ +VTGSGKTAAF+IP++E+++ +K
Sbjct: 21 GLDVMGFETMTPVQASTIPMLAGNKDVVVDSVTGSGKTAAFVIPVLEKVVKEEANTSKFK 80
Query: 299 PAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFG----LAVGGLNLRQQEQA--- 351
AH S +++ PTREL+ Q+ V + + F L VG ++
Sbjct: 81 KAHFHS---LIIAPTRELSRQIESVVLSFLEHYPSDLFPIKCQLLVGTNEATVRDDVSNF 137
Query: 352 LKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSK 411
L+ RP I+I TPGR +D L+ A + ++V+DEADR+L+ F ++ ++I+ L+P +
Sbjct: 138 LRNRPQILIGTPGRVLDFLQMPA-VKTSACSMVVMDEADRLLDMSFIKDTEKILRLLPKQ 196
Query: 412 RQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQ 471
R+T LFSATM PVRI ++ QA L + + + L+
Sbjct: 197 RRTGLFSATMRSAGSDIFKTGLRNPVRITVNSKNQAPSSLKLNYCVVNPAEKLQ-----L 251
Query: 472 LIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLG--------MQVGELHGSLTQEQRLQS 523
L+ L+N K+ +V+ + + LG +++ LHG L R ++
Sbjct: 252 LVSILNNYKFKKCIVYFPTCVSVSYFYSFIQYLGKRNILVNEVEIFSLHGKLQTSARTKT 311
Query: 524 VNNFK-SLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSV 582
+ F SL VL TD+A+RG+DIP +++VI D P ++++HR GRT RA R G+++
Sbjct: 312 LTAFTDSLSNSVLFTTDVAARGIDIPDVDLVIQLDPPTNTDMFMHRCGRTGRANRVGKAI 371
Query: 583 TFVGESSQDRSIVRSAIRSVE 603
TF+ E ++ I +++VE
Sbjct: 372 TFLNEGREEDFIPFMQVKNVE 392
>CE00839 [A] KOG0326 ATP-dependent RNA helicase
Length = 430
Score = 186 bits (473), Expect = 9e-47
Identities = 118/373 (31%), Positives = 194/373 (51%), Gaps = 13/373 (3%)
Query: 224 SADAKKIVHKTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGK 283
+AD F L R +L G+ G+ PSPIQ A+I +AL G+DI+A A G+GK
Sbjct: 34 TADVTDTKGVEFEDFCLGRDLLMGIFEKGWEKPSPIQEASIGVALTGQDILARAKNGTGK 93
Query: 284 TAAFMIPIIERLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGL 343
T A+ IP+IE++ +PA + + + +V+ PTRELA+Q + + + K + L + GG
Sbjct: 94 TGAYCIPVIEKI--QPA-LKAIQAMVIVPTRELALQTSQICVELSKHIQ-LKVMVTTGGT 149
Query: 344 NLRQQEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQE 403
+LR L +VIATPGR +D + + ++ + LV+DEAD++L + FQ L
Sbjct: 150 DLRDDIMRLNGTVHLVIATPGRILDLMEKGVA-KMEHCKTLVLDEADKLLSQDFQGILDR 208
Query: 404 IMSLIPSKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDH 463
+++ +P +RQ +L+SAT P I + +TQ + ++++
Sbjct: 209 LINFLPKERQVMLYSATFPNTVTSFMQKHMHKPYEINLMEELTLLG-VTQYYAFVQEKQ- 266
Query: 464 LKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQS 523
K L L RKL ++F + L + +G +H + Q R +
Sbjct: 267 -KVHCLNTLFRKLQINQS---IIFCNSTQRVELLAKKITEIGYSCYYIHSKMAQNHRNRV 322
Query: 524 VNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVT 583
++F+ L+C+DL +RG+DI + VVINFD P+ E YLHR+GR+ R G G ++
Sbjct: 323 FHDFRQGNCRNLVCSDLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVAIN 382
Query: 584 FVGESSQDRSIVR 596
+ + +DR +R
Sbjct: 383 LI--TYEDRHTLR 393
>At3g22310 [A] KOG0331 ATP-dependent RNA helicase
Length = 610
Score = 186 bits (473), Expect = 9e-47
Identities = 118/362 (32%), Positives = 201/362 (54%), Gaps = 15/362 (4%)
Query: 238 LSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLY 297
L +S ++K L G PIQ A + A+ G+D+I A TG+GKT AF IPII++++
Sbjct: 121 LGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIK 180
Query: 298 ---KPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKT 354
K + + +VL PTRELA QV K + L GG + QQ + L
Sbjct: 181 FNAKHGRGKNPQCLVLAPTRELARQVE---KEFRESAPSLDTICLYGGTPIGQQMRELNY 237
Query: 355 RPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKRQT 414
D+ + TPGR ID ++ A ++ V+ +V+DEAD+ML+ GF E+++ I+ +P+KRQ+
Sbjct: 238 GIDVAVGTPGRIIDLMKRGA-LNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQS 296
Query: 415 LLFSATMNXXXXXXXXXXXXXPVRIMI--DPPKQAADKLTQEFIRIRKRDHLKPALLYQL 472
++FSATM P+ I + D ++ AD +T I + + +++ L
Sbjct: 297 MMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITM--YSIAADSYGRASIIGPL 354
Query: 473 IRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQV 532
++ ++ + +VF K A +L L + LHG ++Q QR +++ F+
Sbjct: 355 VK--EHGKGGKCIVFTQTKRDADRLAFGLAK-SYKCEALHGDISQAQRERTLAGFRDGNF 411
Query: 533 PVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESSQDR 592
+L+ TD+A+RGLD+P +++VI++++P E ++HR GRT RAG++G ++ G+ Q R
Sbjct: 412 SILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQ-DQTR 470
Query: 593 SI 594
++
Sbjct: 471 AV 472
>YKR059w [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 395
Score = 186 bits (472), Expect = 1e-46
Identities = 109/358 (30%), Positives = 193/358 (53%), Gaps = 13/358 (3%)
Query: 229 KIVHKTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFM 288
K+V+K F+ + L +L+G+ G+ PS IQ AI + G D++A A +G+GKT F
Sbjct: 19 KVVYK-FDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFS 77
Query: 289 IPIIERLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQ 348
I ++R+ + + + ++L PTRELA+Q+ V + F + +GG + +
Sbjct: 78 IAALQRI---DTSVKAPQALMLAPTRELALQIQKVVMALA-FHMDIKVHACIGGTSFVED 133
Query: 349 EQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLI 408
+ L+ IV+ TPGR D+++ F D +++ ++DEAD ML GF+E++ +I +L+
Sbjct: 134 AEGLRDA-QIVVGTPGRVFDNIQRRR-FRTDKIKMFILDEADEMLSSGFKEQIYQIFTLL 191
Query: 409 PSKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPAL 468
P Q +L SATM PVRI++ + + + Q ++ + + ++
Sbjct: 192 PPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYK---- 247
Query: 469 LYQLIRKL-DNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNF 527
Y+ + L D+ S + V+F + +L L V ++ L Q++R + F
Sbjct: 248 -YECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEF 306
Query: 528 KSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFV 585
+S +LI TDL +RG+D+ ++ +VIN+D+P E Y+HR+GR R GR+G ++ FV
Sbjct: 307 RSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFV 364
>YJL138c [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 395
Score = 186 bits (472), Expect = 1e-46
Identities = 109/358 (30%), Positives = 193/358 (53%), Gaps = 13/358 (3%)
Query: 229 KIVHKTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFM 288
K+V+K F+ + L +L+G+ G+ PS IQ AI + G D++A A +G+GKT F
Sbjct: 19 KVVYK-FDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFS 77
Query: 289 IPIIERLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQ 348
I ++R+ + + + ++L PTRELA+Q+ V + F + +GG + +
Sbjct: 78 IAALQRI---DTSVKAPQALMLAPTRELALQIQKVVMALA-FHMDIKVHACIGGTSFVED 133
Query: 349 EQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLI 408
+ L+ IV+ TPGR D+++ F D +++ ++DEAD ML GF+E++ +I +L+
Sbjct: 134 AEGLRDA-QIVVGTPGRVFDNIQRRR-FRTDKIKMFILDEADEMLSSGFKEQIYQIFTLL 191
Query: 409 PSKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPAL 468
P Q +L SATM PVRI++ + + + Q ++ + + ++
Sbjct: 192 PPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYK---- 247
Query: 469 LYQLIRKL-DNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNF 527
Y+ + L D+ S + V+F + +L L V ++ L Q++R + F
Sbjct: 248 -YECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEF 306
Query: 528 KSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFV 585
+S +LI TDL +RG+D+ ++ +VIN+D+P E Y+HR+GR R GR+G ++ FV
Sbjct: 307 RSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFV 364
>7296990 [A] KOG0329 ATP-dependent RNA helicase
Length = 424
Score = 186 bits (471), Expect = 1e-46
Identities = 109/358 (30%), Positives = 191/358 (52%), Gaps = 11/358 (3%)
Query: 235 FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 294
F L +L+ + G+ PS +Q IP A+LG DI+ A +G GKTA F++ +++
Sbjct: 43 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 102
Query: 295 LLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKT 354
L +P+ + V+V+ TRELA Q++ + K++ + + GG+ +++ E+ LK+
Sbjct: 103 L--EPSDNNTCHVLVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGMAIQKDEETLKS 160
Query: 355 -RPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEE-GFQEELQEIMSLIPSKR 412
P IV+ TPGR + +RN ++ ++ V+DE D+MLE+ + ++QEI P +
Sbjct: 161 GTPHIVVGTPGRILALIRNK-KLNLKLLKHFVLDECDKMLEQLDMRRDVQEIFRSTPHGK 219
Query: 413 QTLLFSATMNXXXXXXXXXXXXXPVRIMIDPP-KQAADKLTQEFIRIRKRDHLKPALLYQ 471
Q ++FSAT++ P+ + +D K L Q ++ +++ + K +
Sbjct: 220 QVMMFSATLSKDIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVNLKENEKNK-----K 274
Query: 472 LIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQ 531
L LD ++V+FV + L +L +H +TQE+RL FK Q
Sbjct: 275 LFELLDVLEFNQVVIFVKSVQRCVALSQLLTEQNFPAIGIHRGMTQEERLNRYQQFKDFQ 334
Query: 532 VPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESS 589
+L+ T+L RG+DI ++ +V N+DMP+ + YLHRV R R G +G ++TFV + +
Sbjct: 335 KRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 392
>Hs14251212 [K] KOG4284 DEAD box protein
Length = 824
Score = 185 bits (469), Expect = 3e-46
Identities = 120/369 (32%), Positives = 191/369 (51%), Gaps = 11/369 (2%)
Query: 235 FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 294
F SL LSRPVL+GL + G+ PSP+Q AIP+ G D+I A +G+GKT F ++
Sbjct: 64 FESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDS 123
Query: 295 LLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKT 354
L+ + ST++++L PTRE+A+Q+ V IG + GL + +GG L Q + LK
Sbjct: 124 LVLENL---STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK- 179
Query: 355 RPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEG-FQEELQEIMSLIPSKRQ 413
+ I + +PGR I L + S+ + ++DEAD++LEEG FQE++ I S +P+ +Q
Sbjct: 180 KCHIAVGSPGR-IKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQ 238
Query: 414 TLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQLI 473
L SAT P + ++ + L Q + ++ L + +
Sbjct: 239 MLAVSATYPEFLANALTKYMRDPTFVRLNSSDPSLIGLKQ-YYKVVNSYPLAHKVFEEKT 297
Query: 474 RKLDNTSQK----RIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKS 529
+ L + + +VF A L +L G + G++ Q QRL ++ K
Sbjct: 298 QHLQELFSRIPFNQALVFSNLHSRAQHLADILSSKGFPAECISGNMNQNQRLDAMAKLKH 357
Query: 530 LQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESS 589
VLI TDL SRG+D K+ +V+N D+P +E Y+HR+GR R G G +VT+
Sbjct: 358 FHCRVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYMHRIGRAGRFGTLGLTVTYCCRGE 417
Query: 590 QDRSIVRSA 598
++ ++R A
Sbjct: 418 EENMMMRIA 426
>SPAC17G6.14c [A] KOG0329 ATP-dependent RNA helicase
Length = 434
Score = 184 bits (468), Expect = 3e-46
Identities = 115/381 (30%), Positives = 200/381 (52%), Gaps = 16/381 (4%)
Query: 231 VHKT-FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMI 289
+H T F L +L+ + G+ PS +Q IP ++LG D++ A +G GKTA F++
Sbjct: 48 IHSTGFRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVL 107
Query: 290 PIIERLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQE 349
++++ ++ V+VL TRELA Q+ + K++ + + GG+N++Q
Sbjct: 108 STLQQIEPVDGEVS---VLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDM 164
Query: 350 QALKTR---PDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEE-GFQEELQEIM 405
+A K + P IV+ATPGR ++ L V+SV+ V+DE D++LE + ++QE+
Sbjct: 165 EAFKDKSKSPHIVVATPGR-LNALVREKILKVNSVKHFVLDECDKLLESVDMRRDIQEVF 223
Query: 406 SLIPSKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPP-KQAADKLTQEFIRIRKRDHL 464
P ++Q ++FSAT++ P+ I +D K L Q ++++ ++
Sbjct: 224 RATPPQKQVMMFSATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQHYVKLEEK--- 280
Query: 465 KPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSV 524
A ++ LD+ ++V+FV A++L +L +HG L QE+R++
Sbjct: 281 --AKNRKINDLLDSLEFNQVVIFVKSVSRANELDRLLRECNFPSICIHGGLPQEERIKRY 338
Query: 525 NNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTF 584
FK + + TD+ RG+DI ++ +VIN+DMP + + YLHRVGR R G +G ++TF
Sbjct: 339 KAFKDFDKRICVATDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLAITF 398
Query: 585 VGESSQDRSIVRSAIRSVEEN 605
S +D I+ E N
Sbjct: 399 -SSSEEDSQILDKIQERFEVN 418
>At2g45810 [A] KOG0326 ATP-dependent RNA helicase
Length = 528
Score = 184 bits (468), Expect = 3e-46
Identities = 120/351 (34%), Positives = 180/351 (51%), Gaps = 11/351 (3%)
Query: 235 FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 294
F L R +L+G+ G+ PSPIQ +IPIAL G DI+A A G+GKT AF IP +E+
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEK 215
Query: 295 LLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKT 354
+ + I + V+L PTRELA+Q + V K + K++ + + GG +LR L
Sbjct: 216 IDPENNVI---QAVILVPTRELALQTSQVCKELSKYLK-IEVMVTTGGTSLRDDIMRLYQ 271
Query: 355 RPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKRQT 414
+++ TPGR +D + D +LV+DEAD++L FQ ++E++ +P RQ
Sbjct: 272 PVHLLVGTPGRILDLAKKGVCVLKDCA-MLVMDEADKLLSVEFQPSIEELIQFLPESRQI 330
Query: 415 LLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQLIR 474
L+FSAT P I + + +TQ + + +R K L L
Sbjct: 331 LMFSATFPVTVKSFKDRYLKKPYIINL-MDQLTLMGVTQYYAFVEERQ--KVHCLNTLFS 387
Query: 475 KLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQVPV 534
KL ++F L + LG +H + Q+ R + ++F++
Sbjct: 388 KLQINQS---IIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHDFRNGACRN 444
Query: 535 LICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFV 585
L+CTDL +RG+DI + VVINFD P+T E YLHRVGR+ R G G +V V
Sbjct: 445 LVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLV 495
>YDR243c [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 588
Score = 184 bits (467), Expect = 4e-46
Identities = 127/376 (33%), Positives = 200/376 (52%), Gaps = 28/376 (7%)
Query: 251 LGYTSPSPIQSAAIPIALLGK---DIIAGAVTGSGKTAAFMIPIIERLLYKPAHIASTRV 307
L + SP+PIQ IP K D + A TGSGKT AF+IPI+ ++ P S ++
Sbjct: 192 LRFPSPTPIQRITIPNVCNMKQYRDFLGVASTGSGKTLAFVIPILIKMSRSPPRPPSLKI 251
Query: 308 V------VLTPTRELAIQVADVGKNIGKFVN-----GLTFGLAVGGLNLRQQEQALKTRP 356
+ +L PTREL Q+ + + K + VGG +L + +L
Sbjct: 252 IDGPKALILAPTRELVQQIQKETQKVTKIWSKESNYDCKVISIVGGHSLEEISFSLSEGC 311
Query: 357 DIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSK----- 411
DI++ATPGR ID L N + VE LV+DEAD+M++ GF++++ I++ +
Sbjct: 312 DILVATPGRLIDSLENHL-LVMKQVETLVLDEADKMIDLGFEDQVTNILTKVDINADSAV 370
Query: 412 -RQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLY 470
RQTL+F+ATM PV I + ++ L Q+ + D K L
Sbjct: 371 NRQTLMFTATMTPVIEKIAAGYMQKPVYATIGV-ETGSEPLIQQVVEYADNDEDKFKKLK 429
Query: 471 QLIRKLDNTSQKRIVVFVARKETAHKLRIVLGL-LGMQVGELHGSLTQEQRLQSVNNFKS 529
++ K D I++F+ K+TA L M+V LHGS +QEQR S+ F++
Sbjct: 430 PIVAKYDPP----IIIFINYKQTADWLAEKFQKETNMKVTILHGSKSQEQREHSLQLFRT 485
Query: 530 LQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESS 589
+V ++I T++A+RGLDIP + +V+NF + K + Y+HR+GRT RA EG +V+FV ++
Sbjct: 486 NKVQIMIATNVAARGLDIPNVSLVVNFQISKKMDDYIHRIGRTGRAANEGTAVSFV-SAA 544
Query: 590 QDRSIVRSAIRSVEEN 605
+D S++R + V ++
Sbjct: 545 EDESLIRELYKYVRKH 560
>CE07736 [A] KOG0335 ATP-dependent RNA helicase
Length = 720
Score = 184 bits (467), Expect = 4e-46
Identities = 125/391 (31%), Positives = 205/391 (51%), Gaps = 22/391 (5%)
Query: 233 KTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPII 292
K+F+ + + + + + GYT +PIQ +P+ GKDI+A A TGSGKTAAF++PI+
Sbjct: 298 KSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILACAQTGSGKTAAFLLPIM 357
Query: 293 ERLL------YKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLR 346
RL+ Y R ++LTPTRELA Q+ + G+ + + + GG+N+
Sbjct: 358 SRLILEKDLNYGAEGGCYPRCIILTPTRELADQIYNEGRKFS-YQSVMEIKPVYGGINVG 416
Query: 347 QQEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEE-GFQEELQEIM 405
+ + I++ T GR + H + +D LV+DEADRM++ GF E+++I+
Sbjct: 417 YNKSQIMKGCTIIVGTIGR-VKHFCEDGAIKLDKCRYLVLDEADRMIDSMGFGPEIEQII 475
Query: 406 SL--IPS--KRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADK-LTQEFI---R 457
+ +P KRQT++FSAT ++ AA+K + QEF R
Sbjct: 476 NYKNMPKNDKRQTMMFSATFPSSVQEAARKLLREDYTMITIDKIGAANKCVIQEFELCDR 535
Query: 458 IRKRDHLKPALLYQL----IRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHG 513
K D L L + K + K+ +VFVA+++ A L ++ + +HG
Sbjct: 536 TSKVDKLLKLLGIDIDTYTTEKNSDVFVKKTIVFVAQQKMADTLASIMSAAQVPAITIHG 595
Query: 514 SLTQEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTA 573
+ Q++R ++ F+S PVLI T + RGLDI ++ VIN+DMP + Y+HR+GRT
Sbjct: 596 AREQKERSAALKLFRSGAKPVLIATAVVERGLDIKGVDHVINYDMPNNIDDYIHRIGRTG 655
Query: 574 RAGREGRSVTFVGESSQDRSIVRSAIRSVEE 604
R G GR+ +F+ + D I+ +R++ +
Sbjct: 656 RVGNSGRATSFI-SLADDVQILPQLVRTLAD 685
>At5g05450 [A] KOG0345 ATP-dependent RNA helicase
Length = 593
Score = 184 bits (467), Expect = 4e-46
Identities = 117/379 (30%), Positives = 198/379 (51%), Gaps = 17/379 (4%)
Query: 224 SADAKKIVHKT-FNSLS--LSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTG 280
SA+ K + +T F+ L LS +++ L + +P+Q+A IP+ KD+ A TG
Sbjct: 4 SANINKALTETRFSDLEPPLSGDIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATG 63
Query: 281 SGKTAAFMIPIIERLLYK---PAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFG 337
SGKT AF++P++E L P V+++PTREL+ Q+ +V + + +
Sbjct: 64 SGKTLAFVVPLVEILRRSTSFPPKPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVNSV 123
Query: 338 LAVGGLNLRQQEQALKTRP-DIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEG 396
L VGG ++ + ++ +++I TPGR D + ++EIL++DEADR+LE G
Sbjct: 124 LLVGGREVKADMKIIEEEGCNVLIGTPGRLSDIMERMEILDFRNLEILILDEADRLLEMG 183
Query: 397 FQEELQEIMSLIPSKRQTLLFSATMNXXXXXXXXXXXXXPVRIMI------DPPKQAADK 450
FQ ++ I+S +P +R+T LFSAT PVR+ + + +Q +
Sbjct: 184 FQRQVNYIISRLPKQRRTGLFSATQTEGVEELAKAGLRNPVRVEVRAKSKSESSQQLTNS 243
Query: 451 LTQEFIRIRKRDHLKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLG----LLGM 506
T + + + QL+ L S K+++VF + +VL L +
Sbjct: 244 KTPSGLHLEYMECEADKKSSQLVDLLIKNSDKKLIVFFMTCASVDYWGLVLSKIPALKSI 303
Query: 507 QVGELHGSLTQEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYL 566
+ +HG + Q R +++ +F L+CTD+A+RGLDIP I+ V+ +D P+ ++
Sbjct: 304 SLIPIHGDMKQNARDKALASFTKASSGALLCTDVAARGLDIPGIDYVVQYDPPQDPNMFN 363
Query: 567 HRVGRTARAGREGRSVTFV 585
HR GRTAR GR+GR++ F+
Sbjct: 364 HRAGRTARLGRQGRAIVFL 382
>Hs4758112 [A] KOG0329 ATP-dependent RNA helicase
Length = 428
Score = 183 bits (465), Expect = 7e-46
Identities = 109/358 (30%), Positives = 191/358 (52%), Gaps = 12/358 (3%)
Query: 235 FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 294
F L +L+ + G+ PS +Q IP A+LG D++ A +G GKTA F++ +++
Sbjct: 47 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 106
Query: 295 LLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKT 354
L ++ V+V+ TRELA Q++ + K++ + + GGL++++ E+ LK
Sbjct: 107 LEPVTGQVS---VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK 163
Query: 355 R-PDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEE-GFQEELQEIMSLIPSKR 412
P IV+ TPGR + RN S ++ ++ ++DE D+MLE+ + ++QEI + P ++
Sbjct: 164 NCPHIVVGTPGRILALARNK-SLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEK 222
Query: 413 QTLLFSATMNXXXXXXXXXXXXXPVRIMIDPP-KQAADKLTQEFIRIRKRDHLKPALLYQ 471
Q ++FSAT++ P+ I +D K L Q +++++ D+ K L+
Sbjct: 223 QVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLK--DNEKNRKLFD 280
Query: 472 LIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQ 531
L LD ++V+FV + L +L +H + QE+RL FK Q
Sbjct: 281 L---LDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ 337
Query: 532 VPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESS 589
+L+ T+L RG+DI ++ + N+DMP+ + YLHRV R R G +G ++TFV + +
Sbjct: 338 RRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 395
>CE25121 [A] KOG0335 ATP-dependent RNA helicase
Length = 763
Score = 183 bits (465), Expect = 7e-46
Identities = 127/375 (33%), Positives = 197/375 (51%), Gaps = 23/375 (6%)
Query: 233 KTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPII 292
KTF +L+ + K + GY+ +PIQ A+P+ G DI+A A TGSGKTAAF++PI+
Sbjct: 341 KTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLPIM 400
Query: 293 ERLLYKPAHIAS------TRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLR 346
RL+ + R ++LTPTRELA Q+ + G+ + + GGL +
Sbjct: 401 TRLIDDNNLNTAGEGGCYPRCIILTPTRELADQIYNEGRKFA-YQTMMEIKPVYGGLAVG 459
Query: 347 QQEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEE-GFQEELQEIM 405
+ ++ I++ T GR I H + +D V+DEADRM++ GF +++ I+
Sbjct: 460 YNKGQIEKGATIIVGTVGR-IKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIETIV 518
Query: 406 SL--IPSK--RQTLLFSATM-NXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRK 460
+ +P K RQTL+FSAT + V I ID A + QEF R +
Sbjct: 519 NYDSMPRKENRQTLMFSATFPDSVQEAARAFLRENYVMIAIDKIGAANKCVLQEFERC-E 577
Query: 461 RDHLKPALLYQLIRKLDNTSQ--------KRIVVFVARKETAHKLRIVLGLLGMQVGELH 512
R K LL L +D+ + K+ +VFV+++ A L +L + +H
Sbjct: 578 RSEKKDKLLELLGIDIDSYTTEKSAEVYTKKTMVFVSQRAMADTLASILSSAQVPAITIH 637
Query: 513 GSLTQEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRT 572
G+ Q +R +++ F++ PVLI T +A RGLDI ++ VIN+DMP + Y+HR+GRT
Sbjct: 638 GAREQRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRT 697
Query: 573 ARAGREGRSVTFVGE 587
R G GR+ +F+ E
Sbjct: 698 GRVGNSGRATSFISE 712
>CE28369 [A] KOG0335 ATP-dependent RNA helicase
Length = 644
Score = 183 bits (464), Expect = 1e-45
Identities = 122/383 (31%), Positives = 201/383 (51%), Gaps = 21/383 (5%)
Query: 224 SADAKKIVHKTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGK 283
S D+ + FN V++ + GY+ P+P+Q +IP L +D+++ A TGSGK
Sbjct: 114 SGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGK 173
Query: 284 TAAFMIPIIERLL------YKPAHIASTR------VVVLTPTRELAIQVADVGKNIGKFV 331
TAAF++PII+ +L KP + R +VL+PTRELAIQ+
Sbjct: 174 TAAFLLPIIQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFSYKS 233
Query: 332 NGLTFGLAVGGLNLRQQEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADR 391
N T L G N R Q L+ I+IATPGR ID + + LV+DEADR
Sbjct: 234 NIQTAILYGGRENYRDQVNRLRAGTHILIATPGRLIDIIEQGF-IGLAGCRYLVLDEADR 292
Query: 392 MLEEGFQEELQEIMSL-IPSK--RQTLLFSATM-NXXXXXXXXXXXXXPVRIMIDPPKQA 447
ML+ GF+ ++++I+ +P K R T +FSAT + + +
Sbjct: 293 MLDMGFEPQIRKIVGQGMPPKTARTTAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVGST 352
Query: 448 ADKLTQEFIRIRKRDHLKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQ 507
++ + Q + + + + K + L +++ ++ S+ ++VFV K A++L L ++
Sbjct: 353 SENIEQRLLWVNEME--KRSNLMEIL--MNEHSENLVLVFVETKRGANELAYFLNRQQIR 408
Query: 508 VGELHGSLTQEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLH 567
+HG L Q +R +++ F+S Q P+L+ T +A+RGLDIP + VIN+D+P + Y+H
Sbjct: 409 SVSIHGDLKQIERERNLELFRSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVH 468
Query: 568 RVGRTARAGREGRSVTFVGESSQ 590
R+GRT R G G + +F + ++
Sbjct: 469 RIGRTGRCGNLGIATSFFNDKNR 491
>CE24451 [A] KOG0335 ATP-dependent RNA helicase
Length = 641
Score = 183 bits (464), Expect = 1e-45
Identities = 122/383 (31%), Positives = 201/383 (51%), Gaps = 21/383 (5%)
Query: 224 SADAKKIVHKTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGK 283
S D+ + FN V++ + GY+ P+P+Q +IP L +D+++ A TGSGK
Sbjct: 111 SGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGK 170
Query: 284 TAAFMIPIIERLL------YKPAHIASTR------VVVLTPTRELAIQVADVGKNIGKFV 331
TAAF++PII+ +L KP + R +VL+PTRELAIQ+
Sbjct: 171 TAAFLLPIIQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFSYKS 230
Query: 332 NGLTFGLAVGGLNLRQQEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADR 391
N T L G N R Q L+ I+IATPGR ID + + LV+DEADR
Sbjct: 231 NIQTAILYGGRENYRDQVNRLRAGTHILIATPGRLIDIIEQGF-IGLAGCRYLVLDEADR 289
Query: 392 MLEEGFQEELQEIMSL-IPSK--RQTLLFSATM-NXXXXXXXXXXXXXPVRIMIDPPKQA 447
ML+ GF+ ++++I+ +P K R T +FSAT + + +
Sbjct: 290 MLDMGFEPQIRKIVGQGMPPKTARTTAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVGST 349
Query: 448 ADKLTQEFIRIRKRDHLKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQ 507
++ + Q + + + + K + L +++ ++ S+ ++VFV K A++L L ++
Sbjct: 350 SENIEQRLLWVNEME--KRSNLMEIL--MNEHSENLVLVFVETKRGANELAYFLNRQQIR 405
Query: 508 VGELHGSLTQEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLH 567
+HG L Q +R +++ F+S Q P+L+ T +A+RGLDIP + VIN+D+P + Y+H
Sbjct: 406 SVSIHGDLKQIERERNLELFRSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVH 465
Query: 568 RVGRTARAGREGRSVTFVGESSQ 590
R+GRT R G G + +F + ++
Sbjct: 466 RIGRTGRCGNLGIATSFFNDKNR 488
>At5g11170 [A] KOG0329 ATP-dependent RNA helicase
Length = 435
Score = 183 bits (464), Expect = 1e-45
Identities = 117/387 (30%), Positives = 195/387 (50%), Gaps = 18/387 (4%)
Query: 235 FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 294
F L +L+ + G+ PS +Q IP A+LG D+I A +G GKTA F++ +++
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
Query: 295 LLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKT 354
+ P +++ +VL TRELA Q+ + ++ + GG+N++ + LK
Sbjct: 108 IEPSPGQVSA---LVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKN 164
Query: 355 R-PDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEE-GFQEELQEIMSLIPSKR 412
P IV+ TPGR + L S+ +V ++DE D+MLE + ++QEI + P +
Sbjct: 165 ECPHIVVGTPGRVLA-LAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDK 223
Query: 413 QTLLFSATMNXXXXXXXXXXXXXPVRIMIDPP-KQAADKLTQEFIRIRKRDHLKPALLYQ 471
Q ++FSAT++ P+ I +D K L Q +I++ + + + +
Sbjct: 224 QVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKTR-----K 278
Query: 472 LIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQ 531
L LD ++V+FV A +L +L +H ++QE+RL +FK
Sbjct: 279 LNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGH 338
Query: 532 VPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESSQD 591
+L+ TDL RG+DI ++ +VIN+DMP + + YLHRVGR R G +G ++TFV +S
Sbjct: 339 KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDS 398
Query: 592 RSIVRSAIRSVEENAESG-KALSRNVD 617
+ V+E E K L +D
Sbjct: 399 -----EVLNQVQERFEVDIKELPEQID 420
>At5g11200 [A] KOG0329 ATP-dependent RNA helicase
Length = 427
Score = 182 bits (463), Expect = 1e-45
Identities = 119/387 (30%), Positives = 196/387 (49%), Gaps = 18/387 (4%)
Query: 235 FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 294
F L +L+ + G+ PS +Q IP A+LG D+I A +G GKTA F++ +++
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
Query: 295 LLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKT 354
+ P +++ +VL TRELA Q+ + ++ + GG+N++ + LK
Sbjct: 108 IEPSPGQVSA---LVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKN 164
Query: 355 R-PDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEE-GFQEELQEIMSLIPSKR 412
P IV+ TPGR + L S+ +V ++DE D+MLE + ++QEI + P +
Sbjct: 165 ECPHIVVGTPGRVLA-LAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDK 223
Query: 413 QTLLFSATMNXXXXXXXXXXXXXPVRIMIDPP-KQAADKLTQEFIRIRKRDHLKPALLYQ 471
Q ++FSAT++ P+ I +D K L Q +I++ + + K L
Sbjct: 224 QVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEME--KNRKLND 281
Query: 472 LIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQ 531
L+ LD ++V+FV A +L +L +H ++QE+RL +FK
Sbjct: 282 LLDALDFN---QVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGH 338
Query: 532 VPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESSQD 591
+L+ TDL RG+DI ++ +VIN+DMP + + YLHRVGR R G +G ++TFV +S
Sbjct: 339 KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDS 398
Query: 592 RSIVRSAIRSVEENAESG-KALSRNVD 617
+ V+E E K L +D
Sbjct: 399 -----EVLNQVQERFEVDIKELPEQID 420
>Hs5453840_1 [A] KOG0331 ATP-dependent RNA helicase
Length = 469
Score = 182 bits (463), Expect = 1e-45
Identities = 123/369 (33%), Positives = 196/369 (52%), Gaps = 13/369 (3%)
Query: 235 FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 294
F+ + + V+ L +T P+PIQ P+AL G+D++ A TGSGKT A+++P I
Sbjct: 94 FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVH 153
Query: 295 LLYKPAHIASTRVV--VLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQAL 352
+ ++P + VL PTRELA QV V + GK + L GG Q + L
Sbjct: 154 INHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGK-CSRLKSTCIYGGAPKGPQIRDL 212
Query: 353 KTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKR 412
+ +I IATPGR ID L S ++ LV+DEADRML+ GF+ ++++I+ I R
Sbjct: 213 ERGVEICIATPGRLIDFLE-SGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 271
Query: 413 QTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRI---RKRDHLKPALL 469
QTL++SAT +I + + +A+ + + + ++DH L
Sbjct: 272 QTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHK----L 327
Query: 470 YQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKS 529
QL+ ++ + + ++FV K L + G +HG +Q +R +N F+S
Sbjct: 328 IQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRS 387
Query: 530 LQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFV--GE 587
+ P+LI TD+ASRGLD+ ++ VIN+D P + E Y+HR+GRTAR+ +G + TF G
Sbjct: 388 GKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGN 447
Query: 588 SSQDRSIVR 596
Q R +++
Sbjct: 448 LKQARELIK 456
>SPBC776.09 [A] KOG0326 ATP-dependent RNA helicase
Length = 485
Score = 182 bits (462), Expect = 2e-45
Identities = 121/360 (33%), Positives = 178/360 (48%), Gaps = 11/360 (3%)
Query: 226 DAKKIVHKTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTA 285
D K F L R +L G+ G+ PSPIQ +IPIAL G+DI+A A G+GKTA
Sbjct: 37 DVTKTRGTEFEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTA 96
Query: 286 AFMIPIIERLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNL 345
AF+IP +E++ K + I + ++L PTRELA+Q + V K +GK +N + + GG L
Sbjct: 97 AFVIPSLEKVDTKKSKI---QTLILVPTRELALQTSQVCKTLGKHMN-VKVMVTTGGTTL 152
Query: 346 RQQEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIM 405
R L IV+ TPGR +D L V+DEAD++L F +++++
Sbjct: 153 RDDIIRLNDTVHIVVGTPGRVLD-LAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQLL 211
Query: 406 SLIPSKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLK 465
S P RQ L+SAT P I + + +TQ + + + K
Sbjct: 212 SYFPKNRQISLYSATFPLIVKNFMDKHLNKPYEINL-MDELTLRGVTQYYAFVDESQ--K 268
Query: 466 PALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVN 525
L L KL ++F L + LG H + Q R + +
Sbjct: 269 VHCLNTLFSKLQINQS---IIFCNSTNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFH 325
Query: 526 NFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFV 585
NF++ L+C+DL +RG+DI + VVINFD PK E YLHR+GR+ R G G +++F+
Sbjct: 326 NFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHRGLAISFI 385
>CE09012 [A] KOG0335 ATP-dependent RNA helicase
Length = 974
Score = 181 bits (460), Expect = 3e-45
Identities = 125/391 (31%), Positives = 201/391 (50%), Gaps = 24/391 (6%)
Query: 233 KTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPII 292
KTF+ +L + K + GYT +PIQ +P+ G DI+A A TGSGKTAAF++PI+
Sbjct: 552 KTFSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLPIM 611
Query: 293 ERLLYKPAHIAS------TRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLR 346
RL+ + + R ++LTPTREL Q+ + G+ + + GGL +
Sbjct: 612 ARLIDENDLNTAGEGGCYPRCIILTPTRELTDQIYNEGRKFA-YQTMMEIRPVYGGLAVG 670
Query: 347 QQEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEE-GFQEELQEIM 405
+ ++ I++ T GR I H + +D V+DEADRM++ GF ++ I+
Sbjct: 671 YNKGQIEKGATIIVGTVGR-IKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIDTIV 729
Query: 406 SL--IPSK--RQTLLFSATM-NXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFI---R 457
+ +P K RQTL+FSAT + + + ID A + QEF R
Sbjct: 730 NYESMPKKENRQTLMFSATFPDSVQEAARNHLKEGYIMLAIDKIGAANKCVLQEFEKCDR 789
Query: 458 IRKRDHLKPALLYQL----IRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHG 513
K+D L L + K K+ +VFV+++ A L +L + +HG
Sbjct: 790 SEKKDKLLEILGIDIDSYTTEKNSEVYTKKTIVFVSQRAMADTLASILSSAQVPAITIHG 849
Query: 514 SLTQEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTA 573
+ Q +R +++ F++ PVLI T +A RGLDI ++ VIN+DMP + Y+HR+GRT
Sbjct: 850 AREQRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTG 909
Query: 574 RAGREGRSVTFVGESSQDRSIVRSAIRSVEE 604
R G GR+ +F+ S+D +++ +R + +
Sbjct: 910 RVGNAGRATSFI---SEDCNLLSELVRVLSD 937
>7290853 [A] KOG0331 ATP-dependent RNA helicase
Length = 945
Score = 181 bits (460), Expect = 3e-45
Identities = 122/383 (31%), Positives = 199/383 (51%), Gaps = 12/383 (3%)
Query: 234 TFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 293
+F SL V++ + G+T P+ IQS PIAL G+D++ A TGSGKT A+M+P I
Sbjct: 238 SFEESSLPAHVIEEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIV 297
Query: 294 RLLYKPAHIASTRVV--VLTPTRELAIQVADVGKNIGKFVNG-LTFGLAVGGLNLRQQEQ 350
+ +P I + VL PTRELA Q+ V ++ G + GG + Q +
Sbjct: 298 HIGNQPPIIRGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQAR 357
Query: 351 ALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPS 410
L +++IATPGR ID L N + ++ LV+DEADRML+ GF+ ++++I+ I
Sbjct: 358 DLDRGVEVIIATPGRLIDFLENRNT-NLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRP 416
Query: 411 KRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLY 470
RQ +++SAT ++I I +A+ ++ + I KP L
Sbjct: 417 DRQVVMWSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEIE-KPQRLV 475
Query: 471 QLIRKLD-----NTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVN 525
L+ ++ + +I+VFV K + ++ G +HG TQ +R +
Sbjct: 476 CLLNEISPIKNSGNNGNKIIVFVETKIKVEDILQIIRAEGYNATSIHGDKTQNERDSVLK 535
Query: 526 NFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFV 585
+F++ + +LI TD+ASRGLD+ ++ VIN+D P + E Y+HR+GRT R + G + TF
Sbjct: 536 DFRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFF 595
Query: 586 GESSQDRSIVRSAIRSVEENAES 608
+ ++ R I +EE ++
Sbjct: 596 TPDNAKQA--RELISVLEEAGQT 616
>SPCC1795.11 [A] KOG0335 ATP-dependent RNA helicase
Length = 636
Score = 181 bits (458), Expect = 5e-45
Identities = 120/389 (30%), Positives = 201/389 (50%), Gaps = 27/389 (6%)
Query: 235 FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 294
F S L+ +L+ + GYT P+P+Q +IPI G+D++A A TGSGKTA F+ PI+
Sbjct: 171 FTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSL 230
Query: 295 LLYK-PAHI--------------ASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLA 339
K PA + A ++L PTREL Q+ + + + + +
Sbjct: 231 AFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFC-YRSWVRPCAV 289
Query: 340 VGGLNLRQQEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQE 399
GG ++R Q + + D++ ATPGR +D L + S+ +++ LV+DEADRML+ GF+
Sbjct: 290 YGGADIRAQIRQIDQGCDLLSATPGRLVD-LIDRGRISLANIKFLVLDEADRMLDMGFEP 348
Query: 400 ELQEIMS----LIPSKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEF 455
+++ I+ +RQTL+FSAT V + + ++ +TQ+
Sbjct: 349 QIRHIVEGADMTSVEERQTLMFSATFPRDIQLLARDFLKDYVFLSVGRVGSTSENITQKV 408
Query: 456 IRIRKRDHLKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSL 515
+ + D K + L ++ L + ++FV K A L L +HG
Sbjct: 409 VHVE--DSEKRSYLLDILHTLP--PEGLTLIFVETKRMADTLTDYLLNSNFPATSIHGDR 464
Query: 516 TQEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARA 575
TQ +R +++ F+S + +++ T +ASRGLDIP + VIN+D+P + Y+HR+GRT RA
Sbjct: 465 TQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRA 524
Query: 576 GREGRSVTFVGESSQDRSIVRSAIRSVEE 604
G G++V F + ++ I + I ++E
Sbjct: 525 GNTGQAVAFFNRN--NKGIAKELIELLQE 551
>SPBC4F6.07c [A] KOG0347 RNA helicase
Length = 648
Score = 179 bits (455), Expect = 1e-44
Identities = 125/375 (33%), Positives = 193/375 (51%), Gaps = 35/375 (9%)
Query: 239 SLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYK 298
SLS +L L G++ P PIQS IP A +G DII A TGSGKT AF IPI+E L +
Sbjct: 128 SLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCL-R 186
Query: 299 PAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKTRPDI 358
+ +V+ PTRELA Q+ + I N + GGL +++Q++ L P +
Sbjct: 187 NVDAKYVQALVVAPTRELAHQICQHFELIKPSPNIRVMSI-TGGLAVQKQQRLLNKHPHV 245
Query: 359 VIATPGRFIDHL-RNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLI----PSKRQ 413
V+ATPGR + N+ + + ++ LV+DEADR+L++ EEL +++ ++ ++RQ
Sbjct: 246 VVATPGRLWSVINENNLTGNFKKIKCLVLDEADRLLQKSHFEELSKLLEILGNPMHTQRQ 305
Query: 414 TLLFSAT--------MNXXXXXXXXXXXXXPVRIMI--------------DPPKQAADKL 451
T +FSAT + P+ M+ +P A ++
Sbjct: 306 TFIFSATFDEGLQQRLKKNMKGNITEKYNSPMENMLKEVRFFGKPKFLDANPQSAVASRV 365
Query: 452 TQEFIRIRKRDHLKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGEL 511
+ I + K LY LI + + +VF E ++ L L + L
Sbjct: 366 LEGLIECAPAE--KDLYLYYLIMRYPG----KTMVFANGIEDIKRITPFLNELKVPSYPL 419
Query: 512 HGSLTQEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGR 571
H L Q++RLQS+ FK+ VL+CTD+A+RG+DIP + VI++ +P T ++Y+HR GR
Sbjct: 420 HAQLDQKKRLQSLEKFKNNPKGVLVCTDVAARGIDIPSVTHVIHYHVPHTADMYVHRSGR 479
Query: 572 TARAGREGRSVTFVG 586
TARA +G S+ G
Sbjct: 480 TARANEDGVSILMCG 494
>Hs9507237 [A] KOG0335 ATP-dependent RNA helicase
Length = 724
Score = 179 bits (455), Expect = 1e-44
Identities = 119/367 (32%), Positives = 192/367 (51%), Gaps = 28/367 (7%)
Query: 234 TFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 293
TF +L + + + GYT +P+Q +IPI L G+D++A A TGSGKTAAF++PI+
Sbjct: 289 TFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILA 348
Query: 294 RLLY------KPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAV--GGLNL 345
+++ + + +++ PTREL Q+ + KF G V GG L
Sbjct: 349 HMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEAR---KFSFGTCVRAVVIYGGTQL 405
Query: 346 RQQEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIM 405
+ + +I+ ATPGR +D + + ++ LV+DEADRML+ GF E+++++
Sbjct: 406 GHSIRQIVQGCNILCATPGRLMD-IIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLI 464
Query: 406 SL--IPSK--RQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFI----R 457
S +PSK RQTL+FSAT + A + Q+ + +
Sbjct: 465 SCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQ 524
Query: 458 IRKRDHLKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQ 517
KR+ +L+ L N +R +VFV K+ A + L + +HG Q
Sbjct: 525 FSKRE--------KLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQ 576
Query: 518 EQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGR 577
+R Q++ +F+ + PVL+ T +A+RGLDI ++ VINFD+P T + Y+HR+GRT R G
Sbjct: 577 REREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGN 636
Query: 578 EGRSVTF 584
GR+++F
Sbjct: 637 TGRAISF 643
>SPBP8B7.16c [A] KOG0331 ATP-dependent RNA helicase
Length = 550
Score = 179 bits (454), Expect = 1e-44
Identities = 114/353 (32%), Positives = 186/353 (52%), Gaps = 5/353 (1%)
Query: 234 TFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 293
TF VLK + LG+ +P+PIQ A P+A+ G+D++ + TGSGKT ++ +P I
Sbjct: 123 TFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIV 182
Query: 294 RLLYKPAHIASTR--VVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQA 351
+ +P V+VL PTRELA+Q+ GK + + GG+ Q +
Sbjct: 183 HINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKS-SRIRNTCVYGGVPRGPQIRD 241
Query: 352 LKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSK 411
L +I IATPGR +D L +S ++ V LV+DEADRML+ GF+ ++++I+ I
Sbjct: 242 LIRGVEICIATPGRLLDML-DSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPD 300
Query: 412 RQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQ 471
RQT++FSAT +++ + AA ++ + + K A L +
Sbjct: 301 RQTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNAD-KRARLGK 359
Query: 472 LIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQ 531
I ++ ++++F K A + L G +HG Q++R +N F++ +
Sbjct: 360 DIEEVLKDRDNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGK 419
Query: 532 VPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTF 584
P+++ TD+ASRG+D+ I V N+D P E Y+HR+GRT RAG +G + T+
Sbjct: 420 SPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTY 472
>At1g71370 [A] KOG0345 ATP-dependent RNA helicase
Length = 558
Score = 178 bits (452), Expect = 2e-44
Identities = 111/362 (30%), Positives = 184/362 (50%), Gaps = 15/362 (4%)
Query: 240 LSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIE---RLL 296
LS +++ L G+ +P+Q+ IP KD++ A TGSGKT AF++P IE R
Sbjct: 23 LSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSN 82
Query: 297 YKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKTR- 355
P V+++PTREL+ Q+ V + + + L VGG + L+
Sbjct: 83 SYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEG 142
Query: 356 PDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKRQTL 415
+++I TPGR D ++ ++EIL++DEADR+L+ GFQ+++ I+S +P +R+T
Sbjct: 143 ANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTG 202
Query: 416 LFSATMNXXXXXXXXXXXXXPVRIM--IDPPKQAADKLTQEFIRIRKRDHLKPALLYQLI 473
LFSAT + ++ + + + L E+++ QL+
Sbjct: 203 LFSATQTQAVADLAKAGLRNAMEVISGAESKSKTSSGLYCEYLKCEADQKSS-----QLV 257
Query: 474 RKLDNTSQKRIVVFVARKETAHKLRIVLG----LLGMQVGELHGSLTQEQRLQSVNNFKS 529
L K++VVF +VL L + HG + Q+ R ++ +F
Sbjct: 258 HLLIENKNKKLVVFFMTCACVDYWGLVLSKIPTLKSISFFSTHGKMDQKGRDTALASFTE 317
Query: 530 LQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESS 589
VL+CTD+A+RGLDIP I+ V+ +D P+ ++++HRVGRTAR R+GR++ F+
Sbjct: 318 ASSGVLLCTDVAARGLDIPGIDYVVQYDPPQDPDVFIHRVGRTARMERQGRAIVFLMPKE 377
Query: 590 QD 591
D
Sbjct: 378 TD 379
>Hs9506931 [A] KOG0346 RNA helicase
Length = 547
Score = 178 bits (451), Expect = 3e-44
Identities = 118/388 (30%), Positives = 189/388 (48%), Gaps = 34/388 (8%)
Query: 235 FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 294
F + L +L+ + LG++ P+ IQ AIP+AL GKD++A A TGSGKTAA+ IP+++
Sbjct: 9 FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL 68
Query: 295 LLYK----PAHIASTRVVVLTPTRELAIQVADVGKNIGKF-VNGLTFGLAVGGLNLRQQE 349
LL++ P + R +VL PT+ELA Q + + + + + + Q
Sbjct: 69 LLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSAAEDSVSQR 128
Query: 350 QALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIP 409
L +PD+V+ TP R + HL+ + DS+E+LV+DEAD + GF+EEL+ ++ +P
Sbjct: 129 AVLMEKPDVVVGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLLCHLP 188
Query: 410 SKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALL 469
Q L SAT N PV + + + Q+F + + + K LL
Sbjct: 189 RIYQAFLMSATFNEDVQALKELILHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLL 248
Query: 470 YQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKS 529
Y L++ + + + ++FV E +++LR+ L + L+G L R ++ F
Sbjct: 249 YALLKL--SLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHIISQFNQ 306
Query: 530 LQVPVLICTDL---------------------------ASRGLDIPKIEVVINFDMPKTY 562
+I TD +RG+D + V+NFD+P T
Sbjct: 307 GFYDCVIATDAEVLGAPVKGKRRGRGPKGDKASDPEAGVARGIDFHHVSAVLNFDLPPTP 366
Query: 563 EIYLHRVGRTARAGREGRSVTFVGESSQ 590
E Y+HR GRTARA G +TFV + Q
Sbjct: 367 EAYIHRAGRTARANNPGIVLTFVLPTEQ 394
>7296646 [A] KOG0331 ATP-dependent RNA helicase
Length = 577
Score = 178 bits (451), Expect = 3e-44
Identities = 126/390 (32%), Positives = 208/390 (53%), Gaps = 15/390 (3%)
Query: 235 FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 294
F+ + L V+K + GY +P+ IQ+ PIA+ G + + A TGSGKT +++P I
Sbjct: 141 FSEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIVH 200
Query: 295 LL-YKPAHIASTRV-VVLTPTRELAIQVADVGKNIGKFV---NGLTFGLAVGGLNLRQQE 349
+ +P + +VL PTRELA Q+ V G N FG A G +R +
Sbjct: 201 INNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQ 260
Query: 350 QALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIP 409
+ +IVIATPGR ID L ++ S ++ LV+DEADRML+ GF+ ++++I+S I
Sbjct: 261 RGC----EIVIATPGRLIDFL-SAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIR 315
Query: 410 SKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALL 469
RQTL++SAT ++I I + +A+ ++ + + + K L
Sbjct: 316 PDRQTLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCD-EFSKEEKL 374
Query: 470 YQLIRKLDNTSQK--RIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNF 527
L+ + +TS+ +I++FV K L + G++ G +HG +Q +R + F
Sbjct: 375 KTLLSDIYDTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREF 434
Query: 528 KSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFV-- 585
+S + +L+ TD+A+RGLD+ I+ VINFD P+ E Y+HR+GRT R+ +G S F
Sbjct: 435 RSGKSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTK 494
Query: 586 GESSQDRSIVRSAIRSVEENAESGKALSRN 615
+ Q +++V + +E + + L+RN
Sbjct: 495 NNAKQAKALVDVLREANQEINPALENLARN 524
>YNL112w [A] KOG0331 ATP-dependent RNA helicase
Length = 546
Score = 177 bits (450), Expect = 4e-44
Identities = 118/380 (31%), Positives = 196/380 (51%), Gaps = 18/380 (4%)
Query: 234 TFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 293
TF+ VL + + G+ P+ IQ P+AL G+D++ A TGSGKT ++ +P I
Sbjct: 114 TFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIV 173
Query: 294 RLLYKP--AHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQA 351
+ +P A V+VL PTRELA+Q+ G + + GG+ QQ +
Sbjct: 174 HINAQPLLAPGDGPIVLVLAPTRELAVQIQTECSKFGHS-SRIRNTCVYGGVPKSQQIRD 232
Query: 352 LKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSK 411
L +IVIATPGR ID L + ++ V LV+DEADRML+ GF+ ++++I+ I
Sbjct: 233 LSRGSEIVIATPGRLIDMLEIGKT-NLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPD 291
Query: 412 RQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRI----RKRDHLKPA 467
RQTL++SAT P+++ + + +A + + + KRD L
Sbjct: 292 RQTLMWSATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLN-- 349
Query: 468 LLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNF 527
+ + ++ + ++F + K + L G +HG Q +R + F
Sbjct: 350 ---KYLETASQDNEYKTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEF 406
Query: 528 KSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGE 587
++ + P+++ TD+A+RG+D+ I VIN+DMP E Y+HR+GRT RAG G +++F E
Sbjct: 407 RNGRSPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTE 466
Query: 588 SSQDR-----SIVRSAIRSV 602
++ SI+R A +++
Sbjct: 467 QNKGLGAKLISIMREANQNI 486
>YOR204w [A] KOG0335 ATP-dependent RNA helicase
Length = 604
Score = 177 bits (449), Expect = 5e-44
Identities = 119/378 (31%), Positives = 199/378 (52%), Gaps = 25/378 (6%)
Query: 235 FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPII-E 293
F S L +L+ + +T P+P+Q ++PI G+D++A A TGSGKT F+ P++ E
Sbjct: 144 FTSPPLDGLLLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSE 203
Query: 294 RLLYKPA-----------HIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGG 342
P+ A V++ PTRELA Q+ D K + + + + GG
Sbjct: 204 SFKTGPSPQPESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKF-TYRSWVKACVVYGG 262
Query: 343 LNLRQQEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQ 402
+ Q + ++ D+++ATPGR D L S+ +V+ LV+DEADRML+ GF+ +++
Sbjct: 263 SPIGNQLREIERGCDLLVATPGRLNDLLERG-KISLANVKYLVLDEADRMLDMGFEPQIR 321
Query: 403 EIMS---LIP-SKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRI 458
I+ + P +RQTL+FSAT + + + ++ +TQ+ + +
Sbjct: 322 HIVEDCDMTPVGERQTLMFSATFPADIQHLARDFLSDYIFLSVGRVGSTSENITQKVLYV 381
Query: 459 RKRDHLKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQE 518
+D K ALL L D + ++FV K A +L L + + +HG TQ
Sbjct: 382 ENQDK-KSALLDLLSASTDGLT----LIFVETKRMADQLTDFLIMQNFRATAIHGDRTQS 436
Query: 519 QRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGRE 578
+R +++ F+S +L+ T +A+RGLDIP + VIN+D+P + Y+HR+GRT RAG
Sbjct: 437 ERERALAAFRSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNT 496
Query: 579 GRSVTFVGESSQDRSIVR 596
G + F +S++ +IV+
Sbjct: 497 GLATAFF--NSENSNIVK 512
>Hs13514813 [A] KOG0335 ATP-dependent RNA helicase
Length = 662
Score = 177 bits (448), Expect = 7e-44
Identities = 115/375 (30%), Positives = 197/375 (51%), Gaps = 27/375 (7%)
Query: 233 KTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPII 292
++F+ + + ++ + YT P+P+Q AIPI +D++A A TGSGKTAAF++PI+
Sbjct: 180 ESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPIL 239
Query: 293 ERLLYKPAHIASTRVV----------------VLTPTRELAIQVADVGKNIGKFVNGLTF 336
++ Y + R + VL PTRELA+Q+ + + + + +
Sbjct: 240 SQI-YSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFS-YRSRVRP 297
Query: 337 GLAVGGLNLRQQEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEG 396
+ GG ++ QQ + L+ +++ATPGR +D + +D + LV+DEADRML+ G
Sbjct: 298 CVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERG-KIGLDFCKYLVLDEADRMLDMG 356
Query: 397 FQEELQEIMS--LIPSK--RQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLT 452
F+ +++ I+ +P K R T++FSAT + + + ++ +T
Sbjct: 357 FEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENIT 416
Query: 453 QEFIRIRKRDHLKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELH 512
Q+ + + + D K + L L+ S +VFV K+ A L L G +H
Sbjct: 417 QKVVWVEESD--KRSFLLDLLNATGKDSLT--LVFVETKKGADSLEDFLYHEGYACTSIH 472
Query: 513 GSLTQEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRT 572
G +Q R ++++ F+S + P+L+ T +A+RGLDI ++ VINFD+P E Y+HR+GRT
Sbjct: 473 GDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRT 532
Query: 573 ARAGREGRSVTFVGE 587
R G G + +F E
Sbjct: 533 GRVGNLGLATSFFNE 547
>At3g16840 [A] KOG0347 RNA helicase
Length = 833
Score = 177 bits (448), Expect = 7e-44
Identities = 133/435 (30%), Positives = 211/435 (47%), Gaps = 78/435 (17%)
Query: 235 FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALL-GKDIIAGAVTGSGKTAAFMIPIIE 293
++S+ L ++K + L + P+ IQ A +A GKD+I A TGSGKT AF +PI++
Sbjct: 193 WSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPILQ 252
Query: 294 RLL-----------------YKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTF 336
RLL K A R +++TPTRELA+QV + +N K ++
Sbjct: 253 RLLDEREKVGKLYALKGEEAQKYAADGYLRALIITPTRELALQVTEHLENAAKNLSVKVV 312
Query: 337 GLAVGGLNLRQQEQALKTRPDIVIATPGRFIDHLRNSASFSVD--SVEILVIDEADRMLE 394
+ VGG+ +QE+ LK +P+IV+ATPGR + + V+ S+ V+DEADRM+E
Sbjct: 313 PI-VGGMFSEKQERRLKEKPEIVVATPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVE 371
Query: 395 EGFQEELQEIMSLIP------------------------SKRQTLLFSAT---------- 420
G ELQ I+ L+P KRQT +FSAT
Sbjct: 372 RGHFRELQSILDLLPVTDKPNEGKTQTVKSNDTVLNVPKKKRQTFVFSATIALSSDFRKK 431
Query: 421 ---------------MNXXXXXXXXXXXXXPVRIM-IDPPKQAADKLTQEFIRIRKRDHL 464
+N V I+ + A K+ + FI+ +++
Sbjct: 432 LKRGSSKSKQSSSGEVNSIEVLSERAGMRDNVAIIDLTTTSILAPKIEESFIKCEEKE-- 489
Query: 465 KPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSV 524
K A LY + L Q R +VF + +L +LG+ V L + Q RL+S+
Sbjct: 490 KDAYLYYI---LSVHGQGRTIVFCTSVTDLRHISGLLKILGLDVCTLFSEMKQRARLKSI 546
Query: 525 NNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTF 584
+ F++ + +LI TDL +RG+DI + +I++ +P + E+Y+HR GRTARA +G S+
Sbjct: 547 DRFRASENGILIATDLVARGIDIKNVRTIIHYKLPHSAEVYVHRCGRTARAFADGCSIAL 606
Query: 585 V--GESSQDRSIVRS 597
+ E+S+ ++ +S
Sbjct: 607 IEPNETSKFYTLCKS 621
>Hs13775232 [A] KOG0331 ATP-dependent RNA helicase
Length = 580
Score = 176 bits (447), Expect = 9e-44
Identities = 114/335 (34%), Positives = 179/335 (53%), Gaps = 8/335 (2%)
Query: 235 FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 294
F SL + L GY P+PIQ IP+ LLG+DI+A A TGSGKTAAF++P+I R
Sbjct: 205 FEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMR 264
Query: 295 LLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKT 354
L++ + ++LTPTRELAIQ+ K + + + L VGGL L Q L+
Sbjct: 265 ALFES---KTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRLQQ 321
Query: 355 RPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKRQT 414
++IATPGR +D ++ S S + V+I+V+DEAD ML+ GFQ+++ +I+ IP+ QT
Sbjct: 322 HVKVIIATPGRLLDIIKQS-SVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPNDCQT 380
Query: 415 LLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQLIR 474
+L SAT+ PVRI+ + Q + + D K L++++
Sbjct: 381 ILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQIILWV--EDPAKKKKLFEILN 438
Query: 475 KLDNTSQKRIVVFVARKETAHKL-RIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQVP 533
+ ++VFV K A L V + G++ +H +Q +R +
Sbjct: 439 D-KKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYE 497
Query: 534 VLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHR 568
V++ T + RGLD+ + +V+NFDMP + + Y+H+
Sbjct: 498 VVVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQ 532
>At3g09620 [A] KOG0334 RNA helicase
Length = 989
Score = 176 bits (447), Expect = 9e-44
Identities = 121/357 (33%), Positives = 181/357 (49%), Gaps = 38/357 (10%)
Query: 235 FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 294
++ L+ +L L L Y P PIQ+ A+PI + G+D I A TGSGKT F++P++
Sbjct: 398 WHQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRH 457
Query: 295 LLYKPAHIASTRVV--VLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQAL 352
+ +P A + V+ PTREL Q+ + K + G+ GG + QQ L
Sbjct: 458 IKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKAL-GIICVPVYGGSGVAQQISEL 516
Query: 353 KTRPDIVIATPGRFIDHLRNSAS--FSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPS 410
K +IV+ TPGR ID L S+ ++ V LV+DEADRM + GF+ ++ I+ I
Sbjct: 517 KRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP 576
Query: 411 KRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLY 470
RQT+LFSAT PV I + + +K + + IR LL
Sbjct: 577 DRQTVLFSATFPRQVETLARKVLNKPVEIQVG-GRSVVNKDITQLVEIRPESERFSRLLE 635
Query: 471 QLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSL 530
L + + +++VFV +E +S+++FKS
Sbjct: 636 LLGEWYE---KGKVLVFVRSQE-----------------------------KSISDFKSD 663
Query: 531 QVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGE 587
+LI T +A+RGLD+ ++E+V+NFD P YE Y+HRVGRT RAGR+G +VTF+ E
Sbjct: 664 VCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISE 720
>Hs22057246 [A] KOG0336 ATP-dependent RNA helicase
Length = 631
Score = 176 bits (446), Expect = 1e-43
Identities = 119/369 (32%), Positives = 195/369 (52%), Gaps = 13/369 (3%)
Query: 244 VLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAHIA 303
+LK + +G P+PIQS A PI L G D+I A TG+GKT ++++P L +P
Sbjct: 233 LLKSIIRVGIVKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISRE 292
Query: 304 STR---VVVLTPTRELAIQV-ADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKTRPDIV 359
++VLTPTRELA+ V A+ K K GL GG N Q + + DI+
Sbjct: 293 QRNGPGMLVLTPTRELALHVEAECSKYSYK---GLKSICIYGGRNRNGQIEDISKGVDII 349
Query: 360 IATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKRQTLLFSA 419
IATPGR D L+ + S ++ S+ LVIDEAD+ML+ F+ ++++I+ + RQT++ SA
Sbjct: 350 IATPGRLND-LQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSA 408
Query: 420 TMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQLIRKLDNT 479
T P+ + + A ++ I + K AL + + + +
Sbjct: 409 TWPDTVRQLALSYLKDPMIVYVGNLNLVAVNTVKQNIIVTTEKE-KRALTQEFVENM--S 465
Query: 480 SQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQVPVLICTD 539
++++FV++K A L + G+ LHG+ Q + ++V +FKS + +LI TD
Sbjct: 466 PNDKVIMFVSQKHIADDLSSDFNIQGISAESLHGNSEQSDQERAVEDFKSGNIKILITTD 525
Query: 540 LASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESSQDRSIVRSAI 599
+ SRGLD+ + V N+D P+ ++Y+HRVG R G+ G SVT + + +D + I
Sbjct: 526 IVSRGLDLNDVTHVYNYDFPRNIDVYVHRVGYIGRTGKTGTSVTLI--TQRDSKMAGELI 583
Query: 600 RSVEENAES 608
+ ++ +S
Sbjct: 584 KILDRANQS 592
>CE22474 [A] KOG0336 ATP-dependent RNA helicase
Length = 504
Score = 176 bits (446), Expect = 1e-43
Identities = 129/369 (34%), Positives = 187/369 (49%), Gaps = 22/369 (5%)
Query: 252 GYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAHIA-------- 303
G+ PSPIQS P+ L G+D I + TGSGKT AF++P LL+ A +A
Sbjct: 103 GFEKPSPIQSQMWPLLLSGQDCIGVSQTGSGKTLAFLLPA---LLHIDAQLAQYEKNDEE 159
Query: 304 ---STRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKTRPDIVI 360
S V+VL+PTRELA Q+ K NG GG + +Q +A + +IVI
Sbjct: 160 QKPSPFVLVLSPTRELAQQIEGEVKKYS--YNGYKSVCLYGGGSRPEQVEACRGGVEIVI 217
Query: 361 ATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKRQTLLFSAT 420
ATPGR D L N S+ SV +V+DEADRML+ GF+ ++ I+ I R L SAT
Sbjct: 218 ATPGRLTD-LSNDGVISLASVTYVVLDEADRMLDMGFEVAIRRILFEIRPDRLVALTSAT 276
Query: 421 MNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDH--LKPALLYQLIRKLDN 478
V + + K +F D L+ + +
Sbjct: 277 WPEGVRKLTDKYTKEAVMAVNGSLDLTSCKSVTQFFEFVPHDSRFLRVCEIVNFLTAAHG 336
Query: 479 TSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQVPVLICT 538
+ K +++FV K A L + G+ LHG +Q R S+N +S +V +L+ T
Sbjct: 337 QNYK-MIIFVKSKVMADHLSSDFCMKGINSQGLHGGRSQSDREMSLNMLRSGEVQILVAT 395
Query: 539 DLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESSQDRSIVRSA 598
DLASRG+D+P I V+N+D P E Y+HRVGRT RAGR+G +++F+ + DRS
Sbjct: 396 DLASRGIDVPDITHVLNYDFPMDIEEYVHRVGRTGRAGRKGEAMSFLWWN--DRSNFEGL 453
Query: 599 IRSVEENAE 607
I+ +E++ +
Sbjct: 454 IQILEKSEQ 462
>At3g19760 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 408
Score = 176 bits (446), Expect = 1e-43
Identities = 107/365 (29%), Positives = 190/365 (51%), Gaps = 15/365 (4%)
Query: 234 TFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 293
+FN + + VL+G+ G+ PS IQ A+ L G+D+IA A +G+GKT+ + + +
Sbjct: 36 SFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQ 95
Query: 294 RLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALK 353
+ + + ++L+PTRELA Q + IG N + +GG ++ + + L+
Sbjct: 96 VVDTSSREV---QALILSPTRELATQTEKTIQAIGLHAN-IQAHACIGGNSVGEDIRKLE 151
Query: 354 TRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKRQ 413
+V TPGR D ++ S ++++L++DE+D ML GF++++ ++ +P Q
Sbjct: 152 HGVHVVSGTPGRVCDMIKRR-SLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPDLQ 210
Query: 414 TLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPAL--LYQ 471
L SAT+ PV+I++ + + + Q F+ + K + L LY
Sbjct: 211 VCLVSATLPHEILEMTSKFMTEPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLY- 269
Query: 472 LIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQ 531
D + + V+F K L + V +HG + Q++R +N F+S
Sbjct: 270 -----DTLTITQAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGD 324
Query: 532 VPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESSQD 591
VLI TD+ +RG+D+ ++ +VIN+D+P E+Y+HR+GR+ R GR+G ++ FV S D
Sbjct: 325 SRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFV--KSDD 382
Query: 592 RSIVR 596
I+R
Sbjct: 383 IKILR 387
>Hs13514809 [A] KOG0335 ATP-dependent RNA helicase
Length = 660
Score = 175 bits (443), Expect = 3e-43
Identities = 114/378 (30%), Positives = 196/378 (51%), Gaps = 25/378 (6%)
Query: 233 KTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPII 292
+ F+ + + ++ + YT P+P+Q AIPI +D++A A TGSGKTAAF++PI+
Sbjct: 178 ENFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPIL 237
Query: 293 ERLLYKPAHIASTRV---------------VVLTPTRELAIQVADVGKNIGKFVNGLTFG 337
++ A V +VL PTRELA+Q+ + + + + +
Sbjct: 238 SQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFS-YRSRVRPC 296
Query: 338 LAVGGLNLRQQEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGF 397
+ GG ++ QQ + L+ +++ATPGR +D + +D + LV+DEADRML+ GF
Sbjct: 297 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERG-KIGLDFCKYLVLDEADRMLDMGF 355
Query: 398 QEELQEIMS--LIPSK--RQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQ 453
+ +++ I+ +P K R T++FSAT + + + ++ +TQ
Sbjct: 356 EPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ 415
Query: 454 EFIRIRKRDHLKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHG 513
+ + + D K + L ++ + S +VFV K+ A L L G +HG
Sbjct: 416 KVVWVEDLD--KRSFLLDILGATGSDSLT--LVFVETKKGADSLEDFLYHEGYACTSIHG 471
Query: 514 SLTQEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTA 573
+Q R ++++ F+S + P+L+ T +A+RGLDI + VINFD+P E Y+HR+GRT
Sbjct: 472 DRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTG 531
Query: 574 RAGREGRSVTFVGESSQD 591
R G G + +F E + +
Sbjct: 532 RVGNLGLATSFFNEKNMN 549
>ECU02g0670 [A] KOG0335 ATP-dependent RNA helicase
Length = 503
Score = 175 bits (443), Expect = 3e-43
Identities = 116/363 (31%), Positives = 191/363 (51%), Gaps = 27/363 (7%)
Query: 233 KTFNSLS-LSRPVL-KGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIP 290
KT +S L P+L K LG Y++P+ IQ IP + G+++I A TG GKT F+IP
Sbjct: 96 KTLSSFKDLCSPLLIKALGK-EYSAPTIIQKYCIPSLVDGRNLICRAPTGMGKTMCFLIP 154
Query: 291 IIERLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQ 350
IIER + + +++PTREL Q+ K V G + V + ++Q+
Sbjct: 155 IIER----HRQMKKPQACIISPTRELCEQIR---VEASKLVAGSR--IRVVSIYGKKQDL 205
Query: 351 ALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPS 410
+ DIV+ATPGR ID L + + + V+DEAD++L+ GF+ ++EI +P
Sbjct: 206 PSYSGVDIVVATPGRLIDLLHRK-KVDLSEIRMFVLDEADKLLDMGFEIPIREIHGFVPK 264
Query: 411 KRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLY 470
QT LFSAT + ++ I+ + + QE + +R K +L
Sbjct: 265 NTQTCLFSATYSPKLTRMINYFLPED-KVSIEISSETLKNIRQEIVEVRN----KKKMLL 319
Query: 471 QLIRKLD---------NTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRL 521
+++ D +++VFV RK ++ VL G+ LHG Q R
Sbjct: 320 NILKGPDINLKGSWRMEVQPDKVLVFVERKSECGEVEKVLKKSGILCVSLHGDKEQADRD 379
Query: 522 QSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRS 581
+++ F++ + PV++ T +A+RG+DI +++VIN+D+PK + Y+HR+GRT R G+ G+S
Sbjct: 380 EALKGFRNGRFPVMVATSVAARGIDIKDVKLVINYDIPKDIKEYIHRIGRTGREGKSGKS 439
Query: 582 VTF 584
++F
Sbjct: 440 ISF 442
>At2g40700 [A] KOG0348 ATP-dependent RNA helicase
Length = 609
Score = 175 bits (443), Expect = 3e-43
Identities = 124/425 (29%), Positives = 204/425 (47%), Gaps = 74/425 (17%)
Query: 234 TFNSLSLSRPVLKGLGS-LGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPII 292
+F+SL L + L +G+ +P+ +Q+ AIP+ L G+D++ A TG+GKT A++ P+I
Sbjct: 30 SFSSLGLDTKLSDQLKERMGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLI 89
Query: 293 ERLLYKPAHIA---STRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQE 349
L + T +V+ PTREL +QV + + + + + G +GG +++
Sbjct: 90 HHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGEKKAKEK 149
Query: 350 QALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIP 409
L+ I+IATPGR +DHL+N+ASF ++ ++ DEAD +LE G+ +E+++I+ L+
Sbjct: 150 ARLRKGISILIATPGRLLDHLKNTASFVHKNLRWVIFDEADSILELGYGKEIEQIIKLLG 209
Query: 410 S----------------KRQTLLFSATMNXXXXXXXXXXXXXPVRIMID----------- 442
S ++Q LL SAT+N PV I +D
Sbjct: 210 SGQNEQGEEDDIVPKGIQKQNLLLSATLNDKVNDLAKLSLDDPVMIGLDNTKLQQNLSIE 269
Query: 443 ----PPKQAAD--------------------KLTQEFIRIRKRDHLKPALLYQLIRKLDN 478
P A D +L Q ++R+ L ALL L +
Sbjct: 270 SPAAPDSDAEDMVIHVNKSANPLSEDYGIPSQLVQRYLRVPCGARL-VALLSVLKNLFER 328
Query: 479 TSQKRIVVFVARKETAHKLRIVLG------------------LLGMQVGELHGSLTQEQR 520
+ +++VVF + ++ +L L + LHGS+ QE R
Sbjct: 329 EASQKVVVFFSTRDAVDFHYSLLSEFQWPPNSETEEEGTKELFLKCKTFRLHGSMEQEDR 388
Query: 521 LQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGR 580
+ FK+ + VL+ TD+A+RGLD PK+ +I +D P Y+HRVGRTAR G +G
Sbjct: 389 RSAFGTFKTEKQAVLLSTDVAARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARIGEKGE 448
Query: 581 SVTFV 585
++ F+
Sbjct: 449 ALLFL 453
>At1g51380 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 392
Score = 175 bits (443), Expect = 3e-43
Identities = 107/356 (30%), Positives = 188/356 (52%), Gaps = 9/356 (2%)
Query: 233 KTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPII 292
K+F+ + ++ VL+G+ GY PS IQ A+ L G+D+IA A +G+GKT+ I +
Sbjct: 22 KSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISVC 81
Query: 293 ERLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQAL 352
+ + + +V+VL+P+RELA Q + IG N + +GG ++ + + L
Sbjct: 82 QIVNISSRKV---QVLVLSPSRELASQTEKTIQAIGAHTN-IQAHACIGGKSIGEDIKKL 137
Query: 353 KTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKR 412
+ V TPGR D ++ S +V++LV+DE+D ML +G ++++ ++ +P
Sbjct: 138 ERGVHAVSGTPGRVYDMIKRG-SLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPHDI 196
Query: 413 QTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQL 472
Q L SAT+ PVRI++ P + + + Q ++ + K + K L L
Sbjct: 197 QVCLISATLPQEILEMTEKFMTDPVRILVKPDELTLEGIKQYYVDVDKEEW-KFDTLCDL 255
Query: 473 IRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQV 532
+L + + ++F ++ L + V +HG Q++R +N F+S +
Sbjct: 256 YGRL---TINQAIIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQKERDDIMNQFRSFKS 312
Query: 533 PVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGES 588
VLI +D+ +RG+D+ + VIN+D+P E+Y+HR+GR R GREG ++ FV S
Sbjct: 313 RVLIASDVWARGIDVQTVSHVINYDIPNNPELYIHRIGRAGRFGREGVAINFVKSS 368
>7295505 [A] KOG0346 RNA helicase
Length = 560
Score = 175 bits (443), Expect = 3e-43
Identities = 123/426 (28%), Positives = 213/426 (49%), Gaps = 43/426 (10%)
Query: 235 FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 294
F+ L L + +LK + LG+ P+ IQS AIP+ L GKD++ A TGSGKTA + +P+I++
Sbjct: 11 FHELELDQRILKAVAQLGWQQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYALPLIQK 70
Query: 295 LLYKPAHIASTRV--VVLTPTRELAIQ----VADVGKNIGKFVNGLTFGLAVGGLNLRQQ 348
+L + + V VVL PT++L Q + + ++ GK V +A + Q
Sbjct: 71 ILNSKLNASEQYVSAVVLAPTKKLCRQSRKVIEQLVESCGKVVR--VADIADSSNDTVTQ 128
Query: 349 EQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLI 408
AL PDIV+ATP + + + + VE LV+DEAD + G++++ + ++ +
Sbjct: 129 RHALSESPDIVVATPANLLAYAEAGSVVDLKHVETLVVDEADLVFAYGYEKDFKRLIKHL 188
Query: 409 PSKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQA-ADKLTQEFIRIRKRDHLKPA 467
P Q +L SAT+ PV + ++ P+ D+L+ + RI ++ KPA
Sbjct: 189 PPIYQAVLVSATLTDDVVRMKGLCLNNPVTLKLEEPELVPQDQLSHQ--RILAEENDKPA 246
Query: 468 LLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNF 527
+LY L++ + + ++FV + +K+R+ L G++ L+ L R+ +++ F
Sbjct: 247 ILYALLKL--RLIRGKSIIFVNSIDRCYKVRLFLEQFGIRACVLNSELPANIRIHTISQF 304
Query: 528 KSLQVPVLICTD-------------------------LASRGLDIPKIEVVINFDMPKTY 562
++I +D ASRG+D + VINFD P+
Sbjct: 305 NKGTYDIIIASDEHHMEKPGGKSATNRKSPRSGDMESSASRGIDFQCVNNVINFDFPRDV 364
Query: 563 EIYLHRVGRTARAGREGRSVTFVG--ESSQDRSIVRSAIRSVEENAESGKALSRNVDWTQ 620
Y+HR GRTAR +G ++FV ES + S+ + S A+ G+ + +N + +
Sbjct: 365 TSYIHRAGRTARGNNKGSVLSFVSMKESKVNDSVEKKLCDSFA--AQEGEQIIKNYQF-K 421
Query: 621 VEQVNS 626
+E+V S
Sbjct: 422 MEEVES 427
>7299006 [A] KOG0345 ATP-dependent RNA helicase
Length = 613
Score = 174 bits (441), Expect = 4e-43
Identities = 126/366 (34%), Positives = 195/366 (52%), Gaps = 28/366 (7%)
Query: 240 LSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYK- 298
LS VL+ + S G+ +P+Q+AAIP+ L KD+ A AVTGSGKT AF++P++E L +
Sbjct: 14 LSDAVLQVVQSFGFQQMTPVQTAAIPLLLARKDVSAEAVTGSGKTLAFLVPMLEILQRRH 73
Query: 299 ---PAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNG-----LTFGLAVGGLNLRQQEQ 350
P +V++PTRELA Q+++V + +F+ L L VGG ++ +
Sbjct: 74 KETPWGPKEIGALVISPTRELARQISEV---LAQFLEHEDLEHLNQQLIVGGNSIEEDIA 130
Query: 351 ALKTR-PDIVIATPGRFIDHLRNSA-----SFSVDSVEILVIDEADRMLEEGFQEELQEI 404
L+ P I++ TPGR D + + V S+E LV+DEADR+L+ GF+ + I
Sbjct: 131 TLRRETPCILVCTPGRLEDLFQRKGDDLNLAAQVKSLEFLVLDEADRLLDLGFKTSVNNI 190
Query: 405 MSLIPSKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLT----QEFIRIRK 460
+ +P +R+T LFSAT PV + + K+ A T Q F RI +
Sbjct: 191 LGYLPRQRRTGLFSATQTTEVTDLIRAGLRNPVLVSV---KEKASVNTPARLQNFYRIVE 247
Query: 461 RDHLKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQ-VGELHGSLTQEQ 519
+ LK L + + K +V F + + LL + V +HG + + +
Sbjct: 248 PE-LKFVALLEFLSSPATVIGKVMVFFPTCACVEYWAEALPPLLPKRTVLGIHGKM-KNK 305
Query: 520 RLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREG 579
R V F++ VL+CTD+ +RGLD+P+IE V+ +D P T ++HRVGRTAR G EG
Sbjct: 306 RANVVEKFRNTPQAVLLCTDVLARGLDVPEIEWVVQWDPPSTASSFVHRVGRTARQGNEG 365
Query: 580 RSVTFV 585
++ F+
Sbjct: 366 NALVFL 371
>Hs4758138 [A] KOG0331 ATP-dependent RNA helicase
Length = 614
Score = 173 bits (439), Expect = 8e-43
Identities = 122/385 (31%), Positives = 200/385 (51%), Gaps = 17/385 (4%)
Query: 244 VLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAHIA 303
V+ + +T P+ IQ+ P+AL G D++ A TGSGKT ++++P I + ++P
Sbjct: 105 VMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLER 164
Query: 304 STRVV--VLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKTRPDIVIA 361
+ VL PTRELA QV V + L GG Q + L+ +I IA
Sbjct: 165 GDGPICLVLAPTRELAQQVQQVAAEYCRACR-LKSTCIYGGAPKGPQIRDLERGVEICIA 223
Query: 362 TPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKRQTLLFSATM 421
TPGR ID L + ++ LV+DEADRML+ GF+ ++++I+ I RQTL++SAT
Sbjct: 224 TPGRLIDFLECGKT-NLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATW 282
Query: 422 NXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQLIRKLDNTSQ 481
+ I I + +A+ + + + D K L +L+ ++ + +
Sbjct: 283 PKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVC-HDVEKDEKLIRLMEEIMSEKE 341
Query: 482 KRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQVPVLICTDLA 541
+ +VFV K +L + G +HG +Q++R +N FK + P+LI TD+A
Sbjct: 342 NKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVA 401
Query: 542 SRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTF-----VGESSQDRSIVR 596
SRGLD+ ++ VIN+D P + E Y+HR+GRTAR+ + G + TF + + S S++R
Sbjct: 402 SRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLR 461
Query: 597 SAIRSVE-------ENAESGKALSR 614
A +++ E+ SG++ R
Sbjct: 462 EANQAINPKLLQLVEDRGSGRSRGR 486
>7297629 [A] KOG0326 ATP-dependent RNA helicase
Length = 458
Score = 173 bits (439), Expect = 8e-43
Identities = 113/351 (32%), Positives = 179/351 (50%), Gaps = 11/351 (3%)
Query: 235 FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 294
F L R +L G+ G+ PSPIQ AAIPIAL GKD++A A G+GKT A+ IP++E+
Sbjct: 59 FEEFCLKRELLMGIFEKGWERPSPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 118
Query: 295 LLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKT 354
+ +I + +V+ PTRELA+Q + + + K ++ + + GG L+ +
Sbjct: 119 IDPTKDYI---QALVMVPTRELALQTSQICIELAKHLD-IRVMVTTGGTILKDDILRIYQ 174
Query: 355 RPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKRQT 414
+ ++IATPGR +D L + + ILV+DEAD++L FQ L ++ +P Q
Sbjct: 175 KVQLIIATPGRILD-LMDKKVADMSHCRILVLDEADKLLSLDFQGMLDHVILKLPKDPQI 233
Query: 415 LLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQLIR 474
LLFSAT P I + + +TQ + +++R K L L
Sbjct: 234 LLFSATFPLTVKNFMEKHLREPYEINL-MEELTLKGVTQYYAFVQERQ--KVHCLNTLFS 290
Query: 475 KLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQVPV 534
KL ++F + L + LG +H + Q R + ++F+
Sbjct: 291 KLQINQS---IIFCNSTQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRN 347
Query: 535 LICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFV 585
L+C+DL +RG+D+ + VVINFD P+ E YLHR+GR+ R G G ++ +
Sbjct: 348 LVCSDLFTRGIDVQAVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLI 398
>SPAC22F3.08c [A] KOG0344 ATP-dependent RNA helicase
Length = 481
Score = 172 bits (437), Expect = 1e-42
Identities = 115/351 (32%), Positives = 185/351 (51%), Gaps = 11/351 (3%)
Query: 254 TSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIERL-LYKPAHIASTRVVVLTP 312
T + IQ AIP +D++A A TGSGKT A++ PI+++L L+ P R +++ P
Sbjct: 67 TECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPG---GYRAIIVAP 123
Query: 313 TRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKTRPDIVIATPGRFIDHLRN 372
TREL Q+ + + + L+ ++++ L+ + D+ I TP R + ++
Sbjct: 124 TRELCEQIYRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKYDMCIGTPMRLVQAIQT 183
Query: 373 SASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKRQTL-LFSATMNXXXXXXXXX 431
SF + VE V+DEADR+ E GF E+ I+S S LFSAT+
Sbjct: 184 GLSF--EKVEFFVMDEADRLFEPGFIEQTDHILSACTSSNICKSLFSATIPSRVEELAKV 241
Query: 432 XXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQLIRKLDNTSQKRIVVFVARK 491
P+RI++ A D + Q + + D K +L Q+I + + R+V+FV
Sbjct: 242 VTVDPIRIIVGLKDAATDSIDQRLLFVGS-DTSKIVILRQMIS--NGELKPRVVIFVQDI 298
Query: 492 ETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIE 551
E A L L + VG +HG L Q +R +++ F+ ++ VLI TDL +RG+D ++
Sbjct: 299 ERAKALYTELLFDEIHVGVIHGELPQAKREEALAKFRKGEIWVLIATDLLARGIDFHGVK 358
Query: 552 VVINFDMPKTYEIYLHRVGRTARAGREGRSVT-FVGESSQDRSIVRSAIRS 601
+VINFD P++ Y+HR+GRT RAG G++VT F E + ++ +RS
Sbjct: 359 MVINFDFPQSVHSYIHRIGRTGRAGNTGQAVTFFTKEDGEYIKLIAGVMRS 409
>At1g63250 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 798
Score = 172 bits (437), Expect = 1e-42
Identities = 113/368 (30%), Positives = 192/368 (51%), Gaps = 19/368 (5%)
Query: 233 KTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPII 292
K F+ +S LK L + G + +Q A + L GKD + A TG+GK+ AF++P I
Sbjct: 328 KRFDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAI 387
Query: 293 ERLLYKPAH------IASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLR 346
E +L +A ++L PTRELA Q+A GK + KF +G+ +GG +
Sbjct: 388 ETVLKAMNSGKGVNKVAPIFALILCPTRELASQIAAEGKALLKFHDGIGVQTLIGGTRFK 447
Query: 347 QQEQALKTRP-DIVIATPGRFIDHLRNSASFS--VDSVEILVIDEADRMLEEGFQEELQE 403
+Q L++ P I+IATPGR +DH+ N + + + ++++ ++DEAD +L+ GF+ ++++
Sbjct: 448 LDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFRRDVEK 507
Query: 404 IMSLIPSKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDP----PKQAADKLTQEFIRI- 458
I+ +P +RQ+LLFSAT+ ID + DK+ Q I
Sbjct: 508 IIDCLPRQRQSLLFSATIPKEVRRVSQLVLKRD-HSYIDTIGLGCVETHDKVRQSCIVAP 566
Query: 459 -RKRDHLKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQ 517
HL P LL + ++NT +I+VF + + +L + + V E+H Q
Sbjct: 567 HESHFHLVPHLLKE---HINNTPDYKIIVFCSTGMVTSLMYTLLREMKLNVREIHARKPQ 623
Query: 518 EQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGR 577
R + + FK +L+ +D+++RG++ P + +VI +P E Y+HR+GRT R G+
Sbjct: 624 LHRTRVSDEFKESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREGK 683
Query: 578 EGRSVTFV 585
G + +
Sbjct: 684 GGEGLLLI 691
>YPL119c [A] KOG0335 ATP-dependent RNA helicase
Length = 617
Score = 172 bits (436), Expect = 2e-42
Identities = 117/386 (30%), Positives = 201/386 (51%), Gaps = 25/386 (6%)
Query: 235 FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 294
F+S L +++ + +T P+P+Q +IPI G+D++A A TGSGKT F+ P+
Sbjct: 156 FSSPPLDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFTE 215
Query: 295 LLYK-PAHIASTR-----------VVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGG 342
L P+ + +VL PTRELA Q+ + + + + + + GG
Sbjct: 216 LFRSGPSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKF-TYRSWVRPCVVYGG 274
Query: 343 LNLRQQEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQ 402
+ Q + + D+++ATPGR D L S+ +++ LV+DEADRML+ GF+ +++
Sbjct: 275 APIGNQMREVDRGCDLLVATPGRLNDLLERG-KVSLANIKYLVLDEADRMLDMGFEPQIR 333
Query: 403 EIMSL--IPS--KRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRI 458
I+ +PS RQTL+FSAT + + + ++ +TQ + +
Sbjct: 334 HIVEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYV 393
Query: 459 RKRDHLKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQE 518
D K ALL L + + ++FV K A +L L + + +HG TQ
Sbjct: 394 DDMDK-KSALLDLLSAEHKGLT----LIFVETKRMADQLTDFLIMQNFKATAIHGDRTQA 448
Query: 519 QRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGRE 578
+R ++++ FK+ +L+ T +A+RGLDIP + VIN+D+P + Y+HR+GRT RAG
Sbjct: 449 ERERALSAFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNT 508
Query: 579 GRSVTFVGESSQDRSIVRSAIRSVEE 604
G + +F +S +++IV+ + + E
Sbjct: 509 GVATSFF--NSNNQNIVKGLMEILNE 532
>At2g07750 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 845
Score = 171 bits (434), Expect = 3e-42
Identities = 115/368 (31%), Positives = 193/368 (52%), Gaps = 19/368 (5%)
Query: 233 KTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPII 292
K F+ +S LK L + G + +Q A + L GKD + A TG+GK+ AF++P I
Sbjct: 375 KRFDESCISPLTLKALSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAI 434
Query: 293 ERLLY-----KPAH-IASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLR 346
E +L K H +A V++L PTRELA Q+A GK + K +G+ +GG R
Sbjct: 435 ETVLKAMNSGKGVHKVAPIFVLILCPTRELASQIAAEGKALLKNHDGIGVQTLIGGTRFR 494
Query: 347 QQEQALKTRP-DIVIATPGRFIDHLRNSASFS--VDSVEILVIDEADRMLEEGFQEELQE 403
+Q L++ P I+IATPGR +DH+ N + + + ++++ ++DEAD +L+ GF+ ++++
Sbjct: 495 LDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFKRDVEK 554
Query: 404 IMSLIPSKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDP----PKQAADKLTQEFIRI- 458
I+ +P +RQ+LLFSAT+ ID + DK+ Q I
Sbjct: 555 IIDCLPRQRQSLLFSATIPKEVRRVSQLVLKRD-HSYIDTIGLGCVETHDKVKQSCIVAP 613
Query: 459 -RKRDHLKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQ 517
HL P LL + ++N +I+VF + + +L + + V E+H Q
Sbjct: 614 HESHFHLVPHLLKE---HINNMPDYKIIVFCSTGMVTSLMYTLLREMKLNVREIHARKPQ 670
Query: 518 EQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGR 577
R + FK +L+ +D+++RG++ P + +VI +P E Y+HR+GRT R G+
Sbjct: 671 LHRTCVSDEFKESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREGK 730
Query: 578 EGRSVTFV 585
G+ + +
Sbjct: 731 GGKGLLLI 738
>7295314 [A] KOG0331 ATP-dependent RNA helicase
Length = 811
Score = 171 bits (434), Expect = 3e-42
Identities = 109/355 (30%), Positives = 188/355 (52%), Gaps = 11/355 (3%)
Query: 244 VLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAHIA 303
V+ + G+ P+ IQ+ PIA+ G+D++ A TGSGKT A+++P + + +P
Sbjct: 161 VMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPAVVHINNQPRLER 220
Query: 304 STRVV--VLTPTRELAIQVADVGKNIGKFV---NGLTFGLAVGGLNLRQQEQALKTRPDI 358
+ VL PTRELA Q+ V G N FG A G QQ + L+ +I
Sbjct: 221 GDGPIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKG----QQARDLERGVEI 276
Query: 359 VIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKRQTLLFS 418
VIATPGR ID L + S+ LV+DEADRML+ GF+ ++++IM I RQ L++S
Sbjct: 277 VIATPGRLIDFLERGTT-SLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDRQVLMWS 335
Query: 419 ATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQLIRKLDN 478
AT +++ I +A+ + + + + K L +L+ +
Sbjct: 336 ATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENE-KLMKLIKLLTDISA 394
Query: 479 TSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQVPVLICT 538
++ + ++FV K+ ++ + G + +HG +Q++R +++F++ + +L+ T
Sbjct: 395 ENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSILVAT 454
Query: 539 DLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESSQDRS 593
D+A+RGLD+ ++ VIN+D P E Y+HR+GRT R+ G + T S+ +++
Sbjct: 455 DVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNANKA 509
>YDL084w [A] KOG0329 ATP-dependent RNA helicase
Length = 446
Score = 171 bits (433), Expect = 4e-42
Identities = 110/371 (29%), Positives = 190/371 (50%), Gaps = 16/371 (4%)
Query: 231 VHKT-FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMI 289
+H T F L + + + G+ PS +Q IP ++ G D++ A +G GKTA F++
Sbjct: 59 IHSTGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVL 118
Query: 290 PIIERLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQE 349
+++L P +A VVV+ RELA Q+ + K++ + + GG + +
Sbjct: 119 STLQQLDPVPGEVA---VVVICNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTPISKDA 175
Query: 350 QALK---TRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEE-GFQEELQEIM 405
+ LK T P IV+ATPGR + L + V+ VIDE D++LEE + ++QEI
Sbjct: 176 ELLKNKDTAPHIVVATPGR-LKALVREKYIDLSHVKNFVIDECDKVLEELDMRRDVQEIF 234
Query: 406 SLIPSKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPP-KQAADKLTQEFIRIRKRDHL 464
P +Q ++FSAT++ P+ I +D K L Q +I++ +R+
Sbjct: 235 RATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLEEREKN 294
Query: 465 KPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSV 524
+ +L + LD+ ++++FV A++L +L +HG + QE+R+
Sbjct: 295 R-----KLAQLLDDLEFNQVIIFVKSTTRANELTKLLNASNFPAITVHGHMKQEERIARY 349
Query: 525 NNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTF 584
FK + + + TD+ RG+DI +I + IN+D+ + YLHRVGR R G +G +++F
Sbjct: 350 KAFKDFEKRICVSTDVFGRGIDIERINLAINYDLTNEADQYLHRVGRAGRFGTKGLAISF 409
Query: 585 VGESSQDRSIV 595
V S +D ++
Sbjct: 410 V-SSKEDEEVL 419
>ECU09g1200 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 425
Score = 171 bits (432), Expect = 5e-42
Identities = 129/371 (34%), Positives = 195/371 (51%), Gaps = 28/371 (7%)
Query: 234 TFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 293
T+ L +LKG+ S+G+ +PS IQ AAI + G+DI A A +G+GKT AF + ++
Sbjct: 39 TWEDYGLKEDLLKGIYSIGFETPSFIQKAAIQPIIDGRDIRAQAQSGTGKTGAFAVAALQ 98
Query: 294 RLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALK 353
T+++VL TRE+A Q A +++G F+ G L GG + + AL+
Sbjct: 99 ---ICDMSQDVTQILVLASTREIAAQNAARFEDLGCFM-GARVALLSGGSPIAADKVALE 154
Query: 354 TRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKR- 412
+P IV+ TPGR ++H+ N S+D++++ VIDEAD ML+ GFQE+++ I I +K
Sbjct: 155 KKPHIVVGTPGR-VEHMININELSMDNIKLFVIDEADEMLKAGFQEQVKSIFRRITNKDE 213
Query: 413 -QTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRK--------RDH 463
Q +FSAT + PV I + Q + Q FI +RK D+
Sbjct: 214 VQIAMFSATYDEEELRVSEEILINPVIIDLRYNDQTLKGIRQYFIDLRKEPPFRKGREDY 273
Query: 464 LKPAL--LYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGE---LHGSLTQE 518
L P L LY + RK + +VF+ KE A RIV L E + LTQ
Sbjct: 274 LLPKLVTLYDIFRK---QRLGQSIVFINSKEDA---RIVYDWLIRHEWECELISAELTQA 327
Query: 519 QRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMP--KTYEIYLHRVGRTARAG 576
+R +++N F+ LI + L SRG+DI + VV D+P + Y+HR+GR+ R G
Sbjct: 328 ERERTLNRFRGGTGRCLISSGLLSRGIDIQNLSVVFCLDVPSFERKSTYIHRIGRSGRYG 387
Query: 577 REGRSVTFVGE 587
R+G ++ V E
Sbjct: 388 RKGIAINIVYE 398
>SPCC285.03 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 604
Score = 170 bits (430), Expect = 8e-42
Identities = 127/427 (29%), Positives = 204/427 (47%), Gaps = 89/427 (20%)
Query: 235 FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIAL----------LGKDIIAGAVTGSGKT 284
F+SL++S +++ L T +Q+A +P+ L G D+ A TGSGKT
Sbjct: 128 FSSLNISSKLVERLQKQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVCVSAATGSGKT 187
Query: 285 AAFMIPIIERLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAV---- 340
+++IPI++ L ++ + R VV+ PTREL +QVA K +++G GL V
Sbjct: 188 LSYVIPIVQCLSHRT--VPRLRCVVIVPTRELTVQVA---KTFEYYMSGA--GLQVCAWT 240
Query: 341 GGLNLRQQEQAL-----KTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEE 395
G +LR + L + R D++++TPGR +DH+RN SFS+ + +VIDEADR+L++
Sbjct: 241 GQKSLRHETYQLNGDENECRIDVLVSTPGRLVDHIRNDESFSLQHLRYMVIDEADRLLDQ 300
Query: 396 GFQEELQEIMSLI-----------------------------------PSKRQTLLFSAT 420
FQ+ + +M I PS Q L+FSAT
Sbjct: 301 SFQDWVDTVMMEISHPKCLQNKSNILDLDQNISPTFLPDIDTLLPYRLPSPLQKLVFSAT 360
Query: 421 MNXXXXXXXXXXXXXPVRIMIDPPKQAADK----------------LTQEFIRIRKRDHL 464
+ P +++ D L + + +
Sbjct: 361 LTRDPSKIASLKLHNPRLVLVQNKDMEVDDGGEIEDDAIVFSVPPTLQEYHVSVSSE--- 417
Query: 465 KPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLL------GMQVGELHGSLTQE 518
KP LLY LI + T+ I+ FV E A +L +L L+ G SL+++
Sbjct: 418 KPILLYHLIHSKNLTN---ILCFVKSNEAAARLHRLLELIHESLNQSFSCGLFTSSLSRD 474
Query: 519 QRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGRE 578
+R + ++ F + + +L+C+DL +RG+D+ + VIN+D P + Y+HR+GRTARAGRE
Sbjct: 475 ERKKIISRFATGDLNLLVCSDLMARGIDVANTQNVINYDPPLSVRSYVHRIGRTARAGRE 534
Query: 579 GRSVTFV 585
G + T V
Sbjct: 535 GFAWTLV 541
>YBR142w [A] KOG0347 RNA helicase
Length = 773
Score = 169 bits (429), Expect = 1e-41
Identities = 141/499 (28%), Positives = 235/499 (46%), Gaps = 77/499 (15%)
Query: 236 NSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIERL 295
N LS +L+ L +L + P+ IQ +IP+ + G D++ A TGSGKT A+ IPI+E+L
Sbjct: 174 NLAPLSMTILQSLQNLNFLRPTEIQKKSIPVIMQGVDVMGKASTGSGKTLAYGIPIVEKL 233
Query: 296 LYKPAHIASTRV-VVLTPTRELAIQVADVGKNIGKFV---NGLTFGLAVGGLNLRQQEQA 351
+ + + ++ TPTRELA QV D K I + V + + GGL++++Q++
Sbjct: 234 ISNFSQKNKKPISLIFTPTRELAHQVTDHLKKICEPVLAKSQYSILSLTGGLSIQKQQRL 293
Query: 352 LK--TRPDIVIATPGRFIDHLR--NSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSL 407
LK IVIATPGRF++ L N+ V L++DEADR+L++G +E ++I+
Sbjct: 294 LKYDNSGQIVIATPGRFLELLEKDNTLIKRFSKVNTLILDEADRLLQDGHFDEFEKIIKH 353
Query: 408 IPSKR--------------QTLLFSATMNXXXXXXXXXX--------------------- 432
+ +R QTL+FSAT +
Sbjct: 354 LLVERRKNRENSEGSSKIWQTLIFSATFSIDLFDKLSSSRQVKDRRFKNNEDELNAVIQH 413
Query: 433 -------XXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQLIRKLDNTSQKRIV 485
PV I +P + + ++ + I + + Y + T+ +
Sbjct: 414 LMSKIHFNSKPVIIDTNPESKVSSQIKESLIECPPLE--RDLYCYYFLTMFPGTT----L 467
Query: 486 VFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFK---------------SL 530
+F ++ KL + L LG+ ++H S+TQ+ RL+S+ FK S+
Sbjct: 468 IFCNAIDSVKKLTVYLNNLGIPAFQIHSSMTQKNRLKSLERFKQQSAKQKTINHSNPDSV 527
Query: 531 QV-PVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESS 589
Q+ VLI +D+A+RGLDIP ++ VI++ +P++ +IY+HR GRTARAG EG S
Sbjct: 528 QLSTVLIASDVAARGLDIPGVQHVIHYHLPRSTDIYIHRSGRTARAGSEGVSAMICSPQE 587
Query: 590 QDRSIVRSAIRSVEENAESGKALSRNVDWTQVEQVNS--LIGAKGDVVXXXXXXXXXXXX 647
+ + +N+ S SR+ + ++ N+ L+ + D++
Sbjct: 588 SMGPLRKLRKTLATKNSVSTDLNSRSTNRKPIKWQNTVPLLPIETDILSQLRERSRLAGE 647
Query: 648 XLRAEM---ELRKGENMLK 663
E+ LRK +N LK
Sbjct: 648 LADHEIASNSLRKDDNWLK 666
>Hs13787209 [A] KOG0331 ATP-dependent RNA helicase
Length = 715
Score = 169 bits (429), Expect = 1e-41
Identities = 119/359 (33%), Positives = 187/359 (51%), Gaps = 15/359 (4%)
Query: 235 FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 294
F++ +S +K L G T PIQ+ GKD+IA A TG+GKT +F IP+IE+
Sbjct: 120 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 179
Query: 295 L---LYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQA 351
L L + +V+VL PTRELA QV+ K+ L+ GG Q +
Sbjct: 180 LHGELQDRKRGRAPQVLVLAPTRELANQVS---KDFSDITKKLSVACFYGGTPYGGQFER 236
Query: 352 LKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSK 411
++ DI++ TPGR DH++N + ++ +V+DE D+ML+ GF ++++EI+S+ K
Sbjct: 237 MRNGIDILVGTPGRIKDHIQNG-KLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKK 295
Query: 412 R-----QTLLFSATM-NXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLK 465
QTLLFSAT + ++ + K +T E + I+ +
Sbjct: 296 DSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQR 355
Query: 466 PALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVN 525
A++ +IR Q R ++F K+ A +L + LHG + Q+QR ++
Sbjct: 356 AAVIGDVIRVYSG-HQGRTIIFCETKKEAQELS-QNSAIKQDAQSLHGDIPQKQREITLK 413
Query: 526 NFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTF 584
F++ VL+ T++A+RGLDIP++++VI PK E Y+HR GRT RAGR G + F
Sbjct: 414 GFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICF 472
>CE11190 [A] KOG0347 RNA helicase
Length = 746
Score = 169 bits (428), Expect = 1e-41
Identities = 132/395 (33%), Positives = 198/395 (49%), Gaps = 51/395 (12%)
Query: 240 LSRPVLKGLGSLGYTSPSPIQSAAIPIALLGK-DIIAGAVTGSGKTAAFMIPIIERLL-- 296
L VL+ + +G++ P+ IQSA +P A+ + D++ A TGSGKT AF IP++ RLL
Sbjct: 162 LPNEVLEAIEQMGFSEPTEIQSAVLPAAVRDRQDVLGAAETGSGKTLAFGIPLVARLLES 221
Query: 297 ------YKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVN--GLTFGLAVGGLNLRQQ 348
+ + R +++ PTREL IQ+ K+I ++ L VGGL +Q
Sbjct: 222 SDDSQETESTEVRGPRALIVAPTRELVIQIM---KHINALISTTQLIATSIVGGLAQVKQ 278
Query: 349 EQAL-KTRPDIVIATPGRFIDHLRNSASFSV----DSVEILVIDEADRMLEEGFQEELQE 403
E+ + + RPDIV+ATPGR ++ + + ++ LV+DE DRM+EEG+ EL
Sbjct: 279 ERIISQQRPDIVVATPGRLWAMMQEAETGEFLAEWKDLKCLVVDETDRMVEEGYFAELTH 338
Query: 404 IMSLI-----PSKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPK-QAADKLTQEFIR 457
I++ I K QTL+FSAT+ + + K Q KLT
Sbjct: 339 ILNKIHEESEKEKLQTLVFSATLTFAKAQDVAEEEKKKAKELSSQQKIQRLIKLT----G 394
Query: 458 IRKRDHLKPALLYQ----------------LIRK------LDNTSQKRIVVFVARKETAH 495
+R+ H L Q L+ K L R +VFV + A
Sbjct: 395 LRENKHKVIDLTRQMGTAGCLVEARINCGNLLEKDTSLVYLLTRYPGRTIVFVNSIDAAR 454
Query: 496 KLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVIN 555
+L VL + + LH + Q+QRL+++ F + VL+ TD+A+RGLDI I+ VI+
Sbjct: 455 RLYSVLKSVNIDPMILHAKMIQKQRLKNLEKFSESKNAVLLATDVAARGLDIQGIDHVIH 514
Query: 556 FDMPKTYEIYLHRVGRTARAGREGRSVTFVGESSQ 590
+ +PK EIY+HR GRTARA G +V V S+
Sbjct: 515 YQVPKKVEIYIHRSGRTARASHRGLTVVLVDPPSR 549
>Hs15316941 [A] KOG0344 ATP-dependent RNA helicase
Length = 491
Score = 169 bits (427), Expect = 2e-41
Identities = 118/369 (31%), Positives = 200/369 (53%), Gaps = 19/369 (5%)
Query: 244 VLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAHIA 303
+L+ + G+ P+PIQ AIP+ L G++++A A TGSGKT AF IPI+ +L +PA+
Sbjct: 68 LLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLK-QPAN-K 125
Query: 304 STRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAV---GGLNLRQQEQALKTRPDIVI 360
R ++++PTRELA Q+ + + K G F + + + ++ + DI++
Sbjct: 126 GFRALIISPTRELASQIH---RELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILV 182
Query: 361 ATPGRFIDHLRNSA-SFSVDSVEILVIDEADRMLEEG---FQEELQEIMSLIPS-KRQTL 415
TP R I L+ + SVE LV+DE+D++ E+G F+++L I S K +
Sbjct: 183 TTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRA 242
Query: 416 LFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQLIRK 475
+FSAT + + I A + + QE + + K + +L++K
Sbjct: 243 MFSATFAYDVEQWCKLNLDNVISVSIGARNSAVETVEQELLFVGSETG-KLLAMRELVKK 301
Query: 476 LDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQVPVL 535
N ++VFV E A +L L G+ V +H TQ+QR +V++F++ ++ VL
Sbjct: 302 GFNPP---VLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVL 358
Query: 536 ICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESSQDRSIV 595
ICT L +RG+D + +VIN+D P + Y+HR+GRT RAG +G+++TF E D+ ++
Sbjct: 359 ICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFTE--DDKPLL 416
Query: 596 RSAIRSVEE 604
RS +++
Sbjct: 417 RSVANVIQQ 425
>SPBC24C6.02 [A] KOG0345 ATP-dependent RNA helicase
Length = 606
Score = 167 bits (424), Expect = 4e-41
Identities = 112/372 (30%), Positives = 191/372 (51%), Gaps = 18/372 (4%)
Query: 234 TFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 293
+F S+++ + + + + G+ +P+Q+ AIP+ L KD++ AVTGSGKT A+++P +
Sbjct: 2 SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFD 61
Query: 294 RLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKF----VNG---LTFGLAVGGLNLR 346
++ + +++ PTRELA Q+ +V K + + ++G L + +GG
Sbjct: 62 KVTRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTL 121
Query: 347 QQEQA--LKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEI 404
+ A + P +VI TPGR + L + +S +EIL++DEAD +++ GFQ LQ I
Sbjct: 122 TNDLASFREKNPSVVIGTPGRLNEMLSHISS---KHLEILILDEADTLIDMGFQRTLQSI 178
Query: 405 MSLIPSKRQTLLFSATMN-XXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDH 463
+S +P +R+T LFSATMN VR+ + + D T + I+
Sbjct: 179 ISQLPKQRRTGLFSATMNDTVSSFLKIAGLRNSVRVSVTVTSKKIDTRTPSSLAIQSL-V 237
Query: 464 LKPALLYQ-LIRKLDNTSQKRIVVFVARKETAHKLR--IVLGLLGMQVGELHGSLTQEQR 520
+ P Q +I L ++ +VF + + + L ++ LHG Q R
Sbjct: 238 IPPIYKVQCMIHLLCTIEYEKAIVFFSSCASVEYFNSLFLTYKLPFEIVALHGQQVQSNR 297
Query: 521 LQSVNNF-KSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREG 579
++ F KS + VL TD+ASRGLDIP ++ V+ D P + + HR GR RAGR G
Sbjct: 298 SRNFEKFKKSNKKTVLFTTDIASRGLDIPNVDFVLQLDPPLDPKSFSHRCGRAGRAGRAG 357
Query: 580 RSVTFVGESSQD 591
++ + + ++
Sbjct: 358 VAIVLLNDGREE 369
>SPBC21H7.04 [A] KOG0348 ATP-dependent RNA helicase
Length = 709
Score = 167 bits (424), Expect = 4e-41
Identities = 121/415 (29%), Positives = 211/415 (50%), Gaps = 72/415 (17%)
Query: 251 LGYTSPSPIQSAAIPIALLG---KDIIAGAVTGSGKTAAFMIPIIERLLYKPAHI----A 303
+ ++P+ IQS +P ALL KD A TGSGKT A+++PI++RL+ P ++ +
Sbjct: 157 MNISAPTAIQSCCLP-ALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTS 215
Query: 304 STRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLA----VGGLNLRQQEQALKTRPDIV 359
V++ PTREL Q+ +V + N L+ + +GG + ++ ++ +I+
Sbjct: 216 GIYAVIMAPTRELCQQIYNVANKLNN--NPLSHWIVSCNVIGGEKKKSEKARIRKGVNIL 273
Query: 360 IATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSL------------ 407
I TPGR DHL N+ + V V +V+DE DR+++ GF+E L +I+S
Sbjct: 274 IGTPGRLADHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKILSYLESQSSIIKKDL 333
Query: 408 -IPSKRQTLLFSATMNXXXXXXXXXXXXXPVRIMI-------DPPKQAADKLTQEFIRIR 459
IPS++ T+L SATM + + D QA ++L Q ++ +
Sbjct: 334 SIPSRKVTMLCSATMKDTVKRLSDSALKDALYLKSSIVEETNDGYSQAPEQLLQRYVVVP 393
Query: 460 KRDHLKPALLYQLIRKLDNTSQKRIVVFVARKETA----HKLRIVLGLLGMQ-------- 507
+ L+ L L+R S K+I++F++ ++ R + M+
Sbjct: 394 PK--LRLVSLVALLRS-HVRSYKKIIIFLSCSDSVDFHFEAFRCAINADEMEEAVKEKPD 450
Query: 508 -------------------VGELHGSLTQEQRLQSVNNFKSLQ---VPVLICTDLASRGL 545
V LHGSL+Q+ R ++N F S + +L+CTD+A+RGL
Sbjct: 451 SEGDIISNAPALRIDGKSNVYRLHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGL 510
Query: 546 DIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTF-VGESSQDRSIVRSAI 599
D+P +++V+ +D P + + YLHR+GRTARAG G ++ F + + S+ ++++S++
Sbjct: 511 DLPNVDLVVQYDAPFSTDDYLHRIGRTARAGHNGAAIMFLLPKESEYINLLKSSV 565
>Hs6005743 [A] KOG0332 ATP-dependent RNA helicase
Length = 479
Score = 167 bits (423), Expect = 5e-41
Identities = 118/364 (32%), Positives = 187/364 (50%), Gaps = 23/364 (6%)
Query: 233 KTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLG--KDIIAGAVTGSGKTAAFMIP 290
K+F L L +L+G+ ++G+ PS IQ A+P+ L +++IA + +G+GKTAAF++
Sbjct: 92 KSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLA 151
Query: 291 IIERLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQ 350
++ ++ +PA+ + + L+PT ELA+Q V + +GKF L AV G L E+
Sbjct: 152 MLSQV--EPAN-KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKL---ER 205
Query: 351 ALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLE-EGFQEELQEIMSLIP 409
K IVI TPG +D +++ V+DEAD M+ +G Q++ I ++P
Sbjct: 206 GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP 265
Query: 410 SKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPAL- 468
Q LLFSAT P I + ++ D + Q ++ RD AL
Sbjct: 266 RNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALC 325
Query: 469 -LYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNF 527
LY I + + ++F ++TA L L G QV L G + EQR + F
Sbjct: 326 NLYGAI------TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF 379
Query: 528 KSLQVPVLICTDLASRGLDIPKIEVVINFDMP------KTYEIYLHRVGRTARAGREGRS 581
+ + VL+ T++ +RG+D+ ++ VVINFD+P E YLHR+GRT R G+ G +
Sbjct: 380 REGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA 439
Query: 582 VTFV 585
V V
Sbjct: 440 VNMV 443
>YGL171w [A] KOG0344 ATP-dependent RNA helicase
Length = 564
Score = 166 bits (421), Expect = 9e-41
Identities = 112/375 (29%), Positives = 200/375 (52%), Gaps = 16/375 (4%)
Query: 239 SLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYK 298
S + +L L G+T P+PIQ IP+AL +D++A TGSGKT AF+IP++++++
Sbjct: 128 SFDKRLLNNLIENGFTEPTPIQCECIPVALNNRDVLACGPTGSGKTLAFLIPLVQQII-D 186
Query: 299 PAHIASTRVVVLTPTRELAIQVADVGKNIGKFV-----NGLTFGLAVGGLNLRQQEQALK 353
A + ++++PT+ELA Q+ + + L L L + + + +
Sbjct: 187 DKQTAGLKGLIISPTKELANQIFIECFKLSYKIFLEKKRPLQVALLSKSLGAKLKNKVVS 246
Query: 354 TRP-DIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLI--PS 410
+ DI+I+TP R ID ++N A + V+ L+ DEAD++ ++ F E+ +I+S PS
Sbjct: 247 DKKYDIIISTPLRLIDVVKNEA-LDLSKVKHLIFDEADKLFDKTFVEQSDDILSACREPS 305
Query: 411 KRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLY 470
R+ + FSAT+ PVR++I + A + Q+ I + K +
Sbjct: 306 LRKAM-FSATIPSNVEEIAQSIMMDPVRVIIGHKEAANTNIEQKLIFCGNEEG-KLIAIR 363
Query: 471 QLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSL 530
QL++ + + I++F+ A L L + V +H T QR + + FK+
Sbjct: 364 QLVQ--EGEFKPPIIIFLESITRAKALYHELMYDRINVDVIHAERTALQRDRIIERFKTG 421
Query: 531 QVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESSQ 590
++ LICTD+ +RG+D + +VIN+D+P + + Y+HR+GRT R GR G+++TF + Q
Sbjct: 422 ELWCLICTDVLARGIDFKGVNLVINYDVPGSSQAYVHRIGRTGRGGRSGKAITFY--TKQ 479
Query: 591 DRSIVRSAIRSVEEN 605
D ++ I ++++
Sbjct: 480 DSVAIKPIINVMKQS 494
>YBR237w [A] KOG0334 RNA helicase
Length = 849
Score = 166 bits (421), Expect = 9e-41
Identities = 105/357 (29%), Positives = 183/357 (50%), Gaps = 23/357 (6%)
Query: 251 LGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYK---PAHIASTRV 307
L + S +PIQS A+P + G+D+I + TGSGKT ++++P++ ++ + H
Sbjct: 274 LHFGSLTPIQSQALPAIMSGRDVIGISKTGSGKTISYLLPLLRQVKAQRPLSKHETGPMG 333
Query: 308 VVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKTRPDIVIATPGRFI 367
++L PTRELA+Q+ + + + GG +++Q LK +IV+ATPGRFI
Sbjct: 334 LILAPTRELALQIHEEVTKFTEADTSIRSVCCTGGSEMKKQITDLKRGTEIVVATPGRFI 393
Query: 368 D--HLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKRQTLLFSATMNXXX 425
D L + S + +V+DEADR+ + GF+ ++ +IM + +Q +LFSAT
Sbjct: 394 DILTLNDGKLLSTKRITFVVMDEADRLFDLGFEPQITQIMKTVRPDKQCVLFSATFPNKL 453
Query: 426 XXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQLIRKL--------- 476
P+ I I+ + + Q+F RI + K L QLI +
Sbjct: 454 RSFAVRVLHSPISITINSKGMVNENVKQKF-RICHSEDEKFDNLVQLIHERSEFFDEVQS 512
Query: 477 DNTSQK--------RIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFK 528
+N Q + ++FV+ + + L G+ +H ++RL ++ FK
Sbjct: 513 ENDGQSSDVEEVDAKAIIFVSSQNICDFISKKLLNAGIVTCAIHAGKPYQERLMNLEKFK 572
Query: 529 SLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFV 585
+ +L+CT++ SRGL++P++ +VI ++ KT+ Y+H GRTAR R G ++T +
Sbjct: 573 REKNSILLCTEVLSRGLNVPEVSLVIIYNAVKTFAQYVHTTGRTARGSRSGTAITLL 629
>Hs8922886 [A] KOG0332 ATP-dependent RNA helicase
Length = 478
Score = 166 bits (421), Expect = 9e-41
Identities = 117/364 (32%), Positives = 184/364 (50%), Gaps = 23/364 (6%)
Query: 233 KTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLG--KDIIAGAVTGSGKTAAFMIP 290
K+F L L +L+G+ ++G+ PS IQ A+P+ L +++IA + +G+GKTAAF++
Sbjct: 91 KSFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLA 150
Query: 291 IIERLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQ 350
++ R+ + + + L+PT ELA+Q V + +GKF L AV G L E+
Sbjct: 151 MLSRVEPSDRY---PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKL---ER 204
Query: 351 ALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLE-EGFQEELQEIMSLIP 409
K IVI TPG +D +++ V+DEAD M+ +G Q++ I ++P
Sbjct: 205 GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP 264
Query: 410 SKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPAL- 468
Q LLFSAT P I + ++ D + Q ++ RD AL
Sbjct: 265 RNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALC 324
Query: 469 -LYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNF 527
LY I + + ++F ++TA L L G QV L G + EQR + F
Sbjct: 325 NLYGAI------TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF 378
Query: 528 KSLQVPVLICTDLASRGLDIPKIEVVINFDMP------KTYEIYLHRVGRTARAGREGRS 581
+ + VL+ T++ +RG+D+ ++ VVINFD+P E YLHR+GRT R G+ G +
Sbjct: 379 REGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA 438
Query: 582 VTFV 585
V V
Sbjct: 439 VNMV 442
>ECU09g1640 [A] KOG0326 ATP-dependent RNA helicase
Length = 489
Score = 166 bits (420), Expect = 1e-40
Identities = 117/401 (29%), Positives = 199/401 (49%), Gaps = 15/401 (3%)
Query: 224 SADAKKIVHKTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGK 283
S D ++ + SL L +LK + +GY PSP+Q A+IP L GK+++ + G+GK
Sbjct: 99 SEDVRETEGIGWESLGLGPVLLKRIRDIGYDFPSPVQVASIPHVLGGKNLLVRSKNGTGK 158
Query: 284 TAAFMIPIIERLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGL 343
TA++++P++ + I ++L P RELA+Q++ K + + G+ VGG
Sbjct: 159 TASYIVPMLNMINSSELSIQG---IILVPIRELALQISRNVKRMSEGT-GVISAPVVGGT 214
Query: 344 NLRQQEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQE 403
+++ + +++ TPGR +D + ++ ILV DEAD++L+ F E + +
Sbjct: 215 SMQDDIIRVSNGVHVMVGTPGRIVDLVEKRVG-TLSKRVILVFDEADKLLDVTFGETVTK 273
Query: 404 IMSLIPSKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDH 463
++ L+P ++Q LL+SAT P + I+ K+ A ++F K
Sbjct: 274 LLDLLPREKQMLLYSATFPYFVTGFIRRYMKNP--LCINLMKELAPVGVKQFYTYVKPSE 331
Query: 464 LKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQS 523
L L+R S + V+F +T L + + +G+ +H + QE R
Sbjct: 332 KLLCLKSLLLR----LSINQCVIFCNSIKTVELLAMKITEMGLPSYFIHSKMAQEDRNIV 387
Query: 524 VNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVT 583
+NF + +L+ TDL +RG+D P VINFD+ K+ E YLHR+GR R G G +++
Sbjct: 388 FHNFLKGKCKILVATDLITRGVDAPNTNYVINFDISKSPESYLHRIGRAGRFGAPGVAIS 447
Query: 584 FVGESSQDRSIVRSAIRSVEENAESGKALSR----NVDWTQ 620
V ++ + A E + S K LSR N+D Q
Sbjct: 448 LVTTEEKEMLMDIEAKLGKEISPLSDKGLSRLHESNIDRNQ 488
>At4g00660 [A] KOG0326 ATP-dependent RNA helicase
Length = 499
Score = 166 bits (420), Expect = 1e-40
Identities = 112/351 (31%), Positives = 172/351 (48%), Gaps = 17/351 (4%)
Query: 235 FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 294
F L R +L G+ G+ PSPIQ +IPIAL G+DI+A A G+GKTAAF IP++E+
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 295 LLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKT 354
+ I V+ T + V K +GK + + + GG +L+ L
Sbjct: 193 IDQDNNVIQGNCVLDHT---------SQVCKELGKHLK-IQVMVTTGGTSLKDDIMRLYQ 242
Query: 355 RPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKRQT 414
+++ TPGR +D + D +LV+DEAD++L + FQ ++ ++S +P RQ
Sbjct: 243 PVHLLVGTPGRILDLTKKGVCVLKDC-SVLVMDEADKLLSQEFQPSVEHLISFLPESRQI 301
Query: 415 LLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQLIR 474
L+FSAT P I + + +TQ + + +R + L L
Sbjct: 302 LMFSATFPVTVKDFKDRFLTNPYVINL-MDELTLKGITQFYAFVEERQKIH--CLNTLFS 358
Query: 475 KLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQVPV 534
KL ++F L + LG +H + Q+ R + ++F++
Sbjct: 359 KLQINQS---IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRN 415
Query: 535 LICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFV 585
L+CTDL +RG+DI + VVINFD PK E YLHRVGR+ R G G +V +
Sbjct: 416 LVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLI 466
>At3g09720 [A] KOG0344 ATP-dependent RNA helicase
Length = 545
Score = 165 bits (418), Expect = 2e-40
Identities = 114/358 (31%), Positives = 186/358 (51%), Gaps = 15/358 (4%)
Query: 244 VLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAHIA 303
+L+ L LG+ P+PIQ AIPI L G++ A A TGSGKT AF+ P++ +L +
Sbjct: 152 ILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPMLIKLKVLNCRPS 211
Query: 304 ST--RVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKTRPDIVIA 361
+ R V+L+P RELA Q A GK K + G F + + L + K D++I+
Sbjct: 212 TDGIRAVILSPARELAAQTAREGK---KLIKGSNFHIRLMTKPLVKTADFSKLWCDVLIS 268
Query: 362 TPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLI--PSKRQTLLFSA 419
TP R ++ + + VE LV+DE+D++ E+ +++ ++ PS ++L FSA
Sbjct: 269 TPMRLKRAIK-AKKIDLSKVEYLVLDESDKLFEQSLLKQIDCVVKACSNPSIIRSL-FSA 326
Query: 420 TMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQLIRKLDNT 479
T+ VR++I A++ + Q+ + + AL L+
Sbjct: 327 TLPDSVEELARSIMHDAVRVIIGRKNTASETVKQKLVFAGSEEGKLLALRQSFAESLNPP 386
Query: 480 SQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQVPVLICTD 539
+++FV KE A +L L ++ G +H L +R +V+ F++ + VLI TD
Sbjct: 387 ----VLIFVQSKERAKELYDELKCENIRAGVIHSDLPPGERENAVDQFRAGEKWVLIATD 442
Query: 540 LASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESSQDRSIVRS 597
+ +RG+D I VIN+D P + Y+HR+GR+ RAGR G ++TF E QD +R+
Sbjct: 443 VIARGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEAITFYTE--QDVPFLRN 498
>7294824 [K] KOG4284 DEAD box protein
Length = 1028
Score = 163 bits (413), Expect = 8e-40
Identities = 104/368 (28%), Positives = 191/368 (51%), Gaps = 17/368 (4%)
Query: 233 KTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPII 292
KTF L L R +L GL + +P+ IQ+AAIP+AL D+I + +G+GKT ++I ++
Sbjct: 25 KTFEELRLYRNLLNGLKRNNFVTPTKIQAAAIPMALAKMDLIIQSKSGTGKTLIYVIAVV 84
Query: 293 ERLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQAL 352
+ + P +I +++ PTRELAIQV D ++ K +GG ++ + + +
Sbjct: 85 QS--FNP-NINQPHAMIVVPTRELAIQVQDTFFHLCKSFRDFKCSAFIGGTDVAKDRKRM 141
Query: 353 KTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLE-EGFQEELQEIMSLIPSK 411
++I TPGR + HL + F V + +LV+DEAD++ + + Q + +++ +P
Sbjct: 142 N-ESRVIIGTPGRLL-HLYENRVFDVSKLRLLVLDEADQLYQTKSLQHTVSKLIEAMPKN 199
Query: 412 RQTLLFSATMNXXXXXXXXXXXXXPVRI-------MIDPPKQAADKLTQEFIRIRKRDHL 464
RQ + SAT + P+ I ++ +Q +L Q+ + + L
Sbjct: 200 RQIIACSATYDQNLDERLAKVMDKPMLISNSERATVLLGIRQFVYELPQQNNSVEEM-RL 258
Query: 465 KPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSV 524
K +L Q+ +L ++ ++F + + A + L G+ + G++ Q +RL
Sbjct: 259 KLQILGQIFNQLP---YEQAIIFASSQMRADSYKNYLTASGIDCHLISGAMEQSERLHVF 315
Query: 525 NNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTF 584
+++ + +L+ TDL +RG+D P +VIN D P+ + YLHR+GR R G +G ++TF
Sbjct: 316 EGYRNFTMRILVATDLMARGVDSPHANLVINIDPPQDHVTYLHRIGRAGRFGSKGIAITF 375
Query: 585 VGESSQDR 592
+ + +
Sbjct: 376 IASKKESQ 383
>YDR194c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 664
Score = 163 bits (412), Expect = 1e-39
Identities = 116/373 (31%), Positives = 194/373 (51%), Gaps = 32/373 (8%)
Query: 240 LSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKD--IIAGAVTGSGKTAAFMIPIIERLLY 297
L + + K + + + +P+Q I L +D +IA A TG+GKT AF+IPI + L+
Sbjct: 113 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLIN 172
Query: 298 -KPAHIASTRVVVLTPTRELAIQV-ADVGKNIGKFVNGLTFGLA-------VGGLNLRQQ 348
K + V++ PTR+LA+Q+ A+V K ++ + +GL VGG + R
Sbjct: 173 TKFDSQYMVKAVIVAPTRDLALQIEAEVKK-----IHDMNYGLKKYACVSLVGGTDFRAA 227
Query: 349 EQAL-KTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSL 407
+ K RP+IVIATPGR ID L ++ V+ V+DEADR+LE GF+++L+ I +
Sbjct: 228 MNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGI 287
Query: 408 IPSKR-------QTLLFSATMNXXXXXXXXXXXXXPVRIMIDP----PKQAADKLTQEFI 456
+ K +TLLFSAT++ + +D +A +++ Q +
Sbjct: 288 LNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVV 347
Query: 457 RIRKRDHLKPALLYQLIRKLD--NTSQKRIVVFVARKETAHKLRIVLGLL--GMQVGELH 512
K + A + + +++ +++ K I+ K T+ I+ + + E H
Sbjct: 348 ISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFH 407
Query: 513 GSLTQEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRT 572
G +TQ +R V FK + +L+CTD+ +RG+D P + V+ +P Y+HR+GRT
Sbjct: 408 GKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRT 467
Query: 573 ARAGREGRSVTFV 585
AR+G+EG SV F+
Sbjct: 468 ARSGKEGSSVLFI 480
>Hs9506609 [A] KOG0340 ATP-dependent RNA helicase
Length = 257
Score = 162 bits (411), Expect = 1e-39
Identities = 99/257 (38%), Positives = 150/257 (57%), Gaps = 10/257 (3%)
Query: 235 FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 294
F L LS +++ LG P+P+Q IP L G+D + A TGSGKTAAF++PI+++
Sbjct: 4 FAELGLSSWLVEQCRQLGLKKPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 295 LLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKT 354
L P I +VLTPTRELA Q+A+ + +GK + GL + VGG+++ Q L
Sbjct: 64 LSEDPYGIFC---LVLTPTRELAYQIAERFRVLGKPL-GLKDCIIVGGMDMVAQALELSR 119
Query: 355 RPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEG---FQEELQEIMSLIPSK 411
+P +VIATPGR DHLR+S +FS+ + LV+DEADR+LE+G F +L+ I++ +P++
Sbjct: 120 KPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPAR 179
Query: 412 RQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQ 471
RQTLLFSAT+ P P ++L Q ++ + ++ +K A L
Sbjct: 180 RQTLLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEK--VKDAYLVH 237
Query: 472 LIRKL-DNTSQKRIVVF 487
LI++ D I++F
Sbjct: 238 LIQRFQDEHEDWSIIIF 254
>Hs13129006 [A] KOG0331 ATP-dependent RNA helicase
Length = 737
Score = 162 bits (411), Expect = 1e-39
Identities = 127/383 (33%), Positives = 197/383 (51%), Gaps = 25/383 (6%)
Query: 235 FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 294
F++ +S +K L G T PIQ GKD+IA A TG+GKT +F IP+IER
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 295 LLYKPAHIASTR---VVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQA 351
L I +R V+VL PTRELA QVA K+I + ++ F GG + + Q
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACF---YGGTSYQSQINH 255
Query: 352 LKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIM-----S 406
++ DI++ TPGR DHL+ S + + +V+DE D+ML+ GF E++++I+ +
Sbjct: 256 IRNGIDILVGTPGRIKDHLQ-SGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKT 314
Query: 407 LIPSKRQTLLFSATMNX---XXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDH 463
QTLLFSAT V ++ ++AA T E + I+
Sbjct: 315 DSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAAT--TVEHLAIQCHWS 372
Query: 464 LKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQS 523
+PA++ +++ S+ R ++F K+ ++ + + LHG + Q QR +
Sbjct: 373 QRPAVIGDVLQVYSG-SEGRAIIFCETKKNVTEMAMNPHIK-QNAQCLHGDIAQSQREIT 430
Query: 524 VNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVT 583
+ F+ VL+ T++A+RGLDIP++++VI P+ E Y+HR GRT RAGR G +
Sbjct: 431 LKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICIC 490
Query: 584 FVGESSQDRSIVRSAIRSVEENA 606
F Q R R +R VE+ A
Sbjct: 491 FY----QPRE--RGQLRYVEQKA 507
>CE25531 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 508
Score = 162 bits (410), Expect = 2e-39
Identities = 97/320 (30%), Positives = 168/320 (52%), Gaps = 9/320 (2%)
Query: 234 TFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 293
TF+ + L +L+G+ + G+ PS IQ AIP L +D+IA A +G+GKTA F I +++
Sbjct: 27 TFDKMGLREDLLRGIYAYGFEKPSAIQQRAIPAILKARDVIAQAQSGTGKTATFSISVLQ 86
Query: 294 RLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALK 353
L + T+ ++L+PTRELA+Q+ V +G ++N + +GG NL + + L
Sbjct: 87 SL---DTQVRETQALILSPTRELAVQIQKVVLALGDYMN-VQCHACIGGTNLGEDIRKLD 142
Query: 354 TRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKRQ 413
+V TPGR D +R + ++++LV+DEAD ML +GF+E+L +I +P Q
Sbjct: 143 YGQHVVSGTPGRVFDMIRR-RNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQ 201
Query: 414 TLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQLI 473
+L SAT+ P+RI++ + + + Q F+ + + + LI
Sbjct: 202 VVLLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDREEW----KFDTLI 257
Query: 474 RKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQVP 533
D + + V+F + L + V +HG + Q+ R + + F++
Sbjct: 258 DLYDTLTITQAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTR 317
Query: 534 VLICTDLASRGLDIPKIEVV 553
VLI TD+ +RGLD+P++ +V
Sbjct: 318 VLISTDVWARGLDVPQVSLV 337
>7293941 [A] KOG0344 ATP-dependent RNA helicase
Length = 594
Score = 162 bits (410), Expect = 2e-39
Identities = 120/356 (33%), Positives = 180/356 (49%), Gaps = 13/356 (3%)
Query: 246 KGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAHIAST 305
+ L S + P+PIQ A+P+ L + ++A A TGSGKT AF+ PII L +
Sbjct: 132 QNLLSRNFDHPTPIQMQALPVLLQRRALMACAPTGSGKTLAFLTPIINGL--RAHKTTGL 189
Query: 306 RVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKTRPDIVIATPGR 365
R +VL PTRELA Q+ + + T ++ ++ K R DI+++TP R
Sbjct: 190 RALVLAPTRELAQQIYRECAELTRETGLRTHFISKVSEAKQKHGAECKQRYDILVSTPNR 249
Query: 366 FIDHLRNSASF-SVDSVEILVIDEADRMLEEG---FQEELQEIMSLIPSKRQTL-LFSAT 420
L+ + VE V+DEADR++EEG F+E+L +I + + + + FSAT
Sbjct: 250 VRFLLQQEPPLLDLSHVEWFVLDEADRLMEEGQNNFKEQLDDIYAACSNPTKCVAFFSAT 309
Query: 421 MNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQLIRKLDNTS 480
VRI I A + + QE + + K + L+R+
Sbjct: 310 YTVPVAKWALRHLKNLVRITIGVQNSATETVQQELLFVGSEGG-KLVAIRDLVRQ---GL 365
Query: 481 QKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQVPVLICTDL 540
Q ++VFV KE A +L L G+ V +H +Q QR V F+ + VLICT+L
Sbjct: 366 QPPVLVFVQSKERAKQLFEELLYDGINVDVIHAERSQHQRDNCVKAFREGSIWVLICTEL 425
Query: 541 ASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESSQDRSIVR 596
RG+D + +VIN+D P T Y+HR+GRT RAGR GR++TF + +D S +R
Sbjct: 426 MGRGIDFKGVNLVINYDFPPTTISYIHRIGRTGRAGRPGRAITFF--TQEDTSNLR 479
>Hs17505907 [A] KOG0348 ATP-dependent RNA helicase
Length = 851
Score = 161 bits (408), Expect = 3e-39
Identities = 115/414 (27%), Positives = 201/414 (47%), Gaps = 50/414 (12%)
Query: 228 KKIVHKTFNSLSLSRPVLKGLGS-LGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAA 286
K F+ L L ++ + + L +S + +Q +IP+ L G+D + + TGSGKT A
Sbjct: 225 KVFTSAAFHELGLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLA 284
Query: 287 FMIPIIERLLYKPAHIASTR---VVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGL 343
+ IP+++ L + I + +VL PTRELA+Q D + + K + G+ +GG
Sbjct: 285 YCIPVVQSLQAMESKIQRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGE 344
Query: 344 NLRQQEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQE 403
+ ++ L+ +I+I+TPGR +DH++++ + + LV DEADR+L+ GF++++
Sbjct: 345 KRKSEKARLRKGINILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITV 404
Query: 404 IMSLIPS---KRQTLLFSATMNXXXXXXXXXXXXXPVRI--------MIDP--------- 443
I++ + + KRQ +L SAT+ PV I ++P
Sbjct: 405 ILNAVNAECQKRQNVLLSATLTEGVTRLADISLHDPVSISVLDKSHDQLNPKDKAVQEVC 464
Query: 444 PKQAADKLTQEFIRIRKRDHLK--------PALLYQLIRKLDNTSQKRIVVFVARKETAH 495
P A DKL I + H+ L +++K +++VVF + E
Sbjct: 465 PPPAGDKLDSFAIPESLKQHVTVVPSKLRLVCLAAFILQKCKFEEDQKMVVFFSSCELVE 524
Query: 496 -----KLRIVLGLLG-------------MQVGELHGSLTQEQRLQSVNNFKSLQVPVLIC 537
L+ +L G ++ LHG + QE+R F + VL+C
Sbjct: 525 FHYSLFLQTLLSSSGAPASGQLPSASMRLKFLRLHGGMEQEERTAVFQEFSHSRRGVLLC 584
Query: 538 TDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESSQD 591
TD+A+RGLD+P++ ++ ++ P + Y+HR+GRTAR G G S+ + S +
Sbjct: 585 TDVAARGLDLPQVTWIVQYNAPSSPAEYIHRIGRTARIGCHGSSLLILAPSEAE 638
>ECU10g0690 [A] KOG0345 ATP-dependent RNA helicase
Length = 463
Score = 161 bits (408), Expect = 3e-39
Identities = 116/389 (29%), Positives = 201/389 (50%), Gaps = 30/389 (7%)
Query: 233 KTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPII 292
K ++++ + K + G+ + +Q IP L GKD++ + TG+GKT AF+ PI+
Sbjct: 4 KGIEDVAMNGRLKKEIEENGFGKMTEVQLKCIPEVLKGKDVVVQSPTGTGKTMAFLAPIL 63
Query: 293 ERLLY-KPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQA 351
+ K VV+TPTRELA+Q+ +V G F + +GG+++ + +
Sbjct: 64 SCIYDGKGRGRPGVTAVVITPTRELALQIREVA---GLF--DVKCECFIGGMSIEEDYKR 118
Query: 352 LKTRPDIVIATPGRFIDHL-RNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPS 410
+K I + TPGR ++ + + + FS S+ LV+DEAD++L GF+E+L ++++ +P
Sbjct: 119 MKEEFSIAVGTPGRLLEIVGKETKKFS--SLSHLVLDEADKLLGFGFEEKLMQLLAKLPR 176
Query: 411 KRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLY 470
R T LFSAT N PV I + + + E+I + +
Sbjct: 177 NRVTGLFSATRNDSVDKLSRVFLRNPVSINVGNNEMP---VALEYIVVSPME-------- 225
Query: 471 QLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGM----QVGELHGSLTQEQRLQSVNN 526
+L+ +D + +R +VF A T ++ GL+ + ++HG ++Q++R +
Sbjct: 226 KLLVLMDIVTGRRCIVFFA---TCSEVDFFSGLVSRAGFGNICKIHGKISQDERNRVYEE 282
Query: 527 FKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFV- 585
F +L CTD+A+RG+D +++V++FD+PK Y +HR GRTAR G +G SV FV
Sbjct: 283 FFQRD-GLLFCTDVAARGIDFRGVDLVVHFDVPKEYSSIVHRSGRTARNGSKGESVLFVM 341
Query: 586 -GESSQDRSIVRSAIRSVEENAESGKALS 613
E + + I +VE + +LS
Sbjct: 342 PNERAYVEFLKLKGIPAVESSYRMKSSLS 370
>YOR046c [A] KOG0332 ATP-dependent RNA helicase
Length = 482
Score = 161 bits (407), Expect = 4e-39
Identities = 118/401 (29%), Positives = 212/401 (52%), Gaps = 26/401 (6%)
Query: 233 KTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLG--KDIIAGAVTGSGKTAAFMIP 290
K+F+ L L+ +LKG+ ++ + PS IQ A+P+ L +++IA + +G+GKTAAF +
Sbjct: 92 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLT 151
Query: 291 IIERLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQ 350
++ R+ + A S + + L P+RELA Q +V + +GKF +T L V E+
Sbjct: 152 MLTRVNPEDA---SPQAICLAPSRELARQTLEVVQEMGKFTK-ITSQLIVPD----SFEK 203
Query: 351 ALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEE-GFQEELQEIMSLIP 409
+ +++ TPG +D +R + ++I V+DEAD ML++ G ++ + +P
Sbjct: 204 NKQINAQVIVGTPGTVLDLMRRKL-MQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLP 262
Query: 410 SKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALL 469
Q +LFSAT + + + D + Q ++ K + K +L
Sbjct: 263 KDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDC-KNEADKFDVL 321
Query: 470 YQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKS 529
+L + S ++FVA K+TA+ L L G +V LHG L ++R + +++F+
Sbjct: 322 TELYGLMTIGSS---IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFRE 378
Query: 530 LQVPVLICTDLASRGLDIPKIEVVINFDMPKTYE------IYLHRVGRTARAGREGRSVT 583
+ VLI T++ +RG+DIP + +V+N+D+P Y+HR+GRT R GR+G +++
Sbjct: 379 GRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAIS 438
Query: 584 FVGESSQDRSIVRSAIRSVEENAESGKALSRNVDWTQVEQV 624
FV + + + SAI+ + E + + DW +VE++
Sbjct: 439 FVHDKNSFN--ILSAIQKYFGDIEMTRVPTD--DWDEVEKI 475
>At3g53110 [A] KOG0332 ATP-dependent RNA helicase
Length = 496
Score = 160 bits (404), Expect = 9e-39
Identities = 130/429 (30%), Positives = 208/429 (48%), Gaps = 38/429 (8%)
Query: 224 SADAKKIVHKTFNSLSLSRPVLKGLG-SLGYTSPSPIQSAAIPIALLG--KDIIAGAVTG 280
S D F L+LS ++KGL + + PS IQ+ ++P+ + K +IA A G
Sbjct: 82 SGDTPYTSASRFEDLNLSPELMKGLYVEMKFEKPSKIQAISLPMIMTPPHKHLIAQAHNG 141
Query: 281 SGKTAAFMIPIIERLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAV 340
SGKT F++ ++ R+ + + + + PTRELA Q +V + +GKF G+T LAV
Sbjct: 142 SGKTTCFVLGMLSRV---DPTLREPQALCICPTRELANQNMEVLQKMGKFT-GITAELAV 197
Query: 341 GGLNLRQQEQALKTRP---DIVIATPGRFIDHLRNSASFS---VDSVEILVIDEADRMLE 394
+ R A + P +VI TPG L+ +F ++ ++ILV DEAD ML
Sbjct: 198 PD-STRGAPAATRGAPVSAHVVIGTPGT----LKKWMAFKRLGLNHLKILVFDEADHMLA 252
Query: 395 -EGFQEELQEIMSLIPSKR---QTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADK 450
+GF+++ +IM I Q LLFSAT N P ++ + A D
Sbjct: 253 TDGFRDDSLKIMKDIGRVNPNFQVLLFSATFNETVKDFVARTVKDPNQLFVKREDLALDS 312
Query: 451 LTQEFIRIRKRDHLKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGE 510
+ Q + K + K ++ I +L + Q ++FV K +A K+ L +G V
Sbjct: 313 VKQYKVVCPKEQN-KIEVIKDQIMELGDIGQT--IIFVKTKASAQKVHKALAEMGYDVTS 369
Query: 511 LHGSLTQEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMP-------KTYE 563
+HG+LT+ R + V FK VLI TD+ +RG D ++ +V+N+++P YE
Sbjct: 370 VHGNLTESDRDKIVKEFKECLTQVLIATDVIARGFDQQRVNLVVNYNLPTKYETGEPDYE 429
Query: 564 IYLHRVGRTARAGREGRSVTFVGESSQDRSIVRSAIRSVEENAESGKALSRNVDWTQVEQ 623
+YLHRVGR R GR+G + + D+ ++ + E N + K+ W E+
Sbjct: 430 VYLHRVGRAGRFGRKGAVFNLLLDDGWDKEVMEKIEKYFEANVKEIKS------WNSEEE 483
Query: 624 VNSLIGAKG 632
S + G
Sbjct: 484 YKSALKEAG 492
>CE18221 [A] KOG0332 ATP-dependent RNA helicase
Length = 613
Score = 159 bits (403), Expect = 1e-38
Identities = 114/375 (30%), Positives = 188/375 (49%), Gaps = 31/375 (8%)
Query: 234 TFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLG--KDIIAGAVTGSGKTAAFMIPI 291
+F L L VLK L ++ + P+ IQ A+P+ L+ ++IA A +G+GKTAAF++ +
Sbjct: 210 SFRELRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVLTM 269
Query: 292 IERLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQA 351
+ R+ ++ + + L PT ELA Q+ +V + +GKF++ L A+ G N+ +
Sbjct: 270 LCRI---DVNLMCPQCICLAPTLELAKQIGEVVEKMGKFIDNLKIHYAIKGGNMAAM-RG 325
Query: 352 LKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRML-EEGFQEELQEIMSLIPS 410
K IVI TPG D+L+ + LV+DEAD M+ +GF + I +++
Sbjct: 326 RKLTEQIVIGTPGITRDYLQKYKCIDPSKIRCLVLDEADVMIYHQGFTDISTTIYNMVED 385
Query: 411 KR---QTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPA 467
Q++LFSAT + + +M+ +QA + Q +++ RD K A
Sbjct: 386 ASDSVQSMLFSATYDEPVINFATKIIKNAIVVMLKREEQALPNIKQFYVQCACRDS-KYA 444
Query: 468 LLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNF 527
+ L L S V+F K + L + G QV LHG +T +R ++ +F
Sbjct: 445 AIVNLYSGLAVASS---VIFCHTKASVMWLYENMRARGHQVDVLHGDMTVVERADTIIHF 501
Query: 528 KSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTY-----------------EIYLHRVG 570
K VLI T++ +RG+D+ ++ VVIN+D+P Y E YLHR+G
Sbjct: 502 KRGDFKVLITTNVFARGIDVAQVSVVINYDLPIKYTDEGTPMVVDGFTQPDCETYLHRIG 561
Query: 571 RTARAGREGRSVTFV 585
RT R G+ G ++ +
Sbjct: 562 RTGRFGKTGIAINLI 576
>CE18220 [A] KOG0332 ATP-dependent RNA helicase
Length = 638
Score = 159 bits (403), Expect = 1e-38
Identities = 114/375 (30%), Positives = 188/375 (49%), Gaps = 31/375 (8%)
Query: 234 TFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLG--KDIIAGAVTGSGKTAAFMIPI 291
+F L L VLK L ++ + P+ IQ A+P+ L+ ++IA A +G+GKTAAF++ +
Sbjct: 235 SFRELRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVLTM 294
Query: 292 IERLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQA 351
+ R+ ++ + + L PT ELA Q+ +V + +GKF++ L A+ G N+ +
Sbjct: 295 LCRI---DVNLMCPQCICLAPTLELAKQIGEVVEKMGKFIDNLKIHYAIKGGNMAAM-RG 350
Query: 352 LKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRML-EEGFQEELQEIMSLIPS 410
K IVI TPG D+L+ + LV+DEAD M+ +GF + I +++
Sbjct: 351 RKLTEQIVIGTPGITRDYLQKYKCIDPSKIRCLVLDEADVMIYHQGFTDISTTIYNMVED 410
Query: 411 KR---QTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPA 467
Q++LFSAT + + +M+ +QA + Q +++ RD K A
Sbjct: 411 ASDSVQSMLFSATYDEPVINFATKIIKNAIVVMLKREEQALPNIKQFYVQCACRDS-KYA 469
Query: 468 LLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNF 527
+ L L S V+F K + L + G QV LHG +T +R ++ +F
Sbjct: 470 AIVNLYSGLAVASS---VIFCHTKASVMWLYENMRARGHQVDVLHGDMTVVERADTIIHF 526
Query: 528 KSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTY-----------------EIYLHRVG 570
K VLI T++ +RG+D+ ++ VVIN+D+P Y E YLHR+G
Sbjct: 527 KRGDFKVLITTNVFARGIDVAQVSVVINYDLPIKYTDEGTPMVVDGFTQPDCETYLHRIG 586
Query: 571 RTARAGREGRSVTFV 585
RT R G+ G ++ +
Sbjct: 587 RTGRFGKTGIAINLI 601
>CE18219 [A] KOG0332 ATP-dependent RNA helicase
Length = 1022
Score = 159 bits (403), Expect = 1e-38
Identities = 114/375 (30%), Positives = 188/375 (49%), Gaps = 31/375 (8%)
Query: 234 TFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLG--KDIIAGAVTGSGKTAAFMIPI 291
+F L L VLK L ++ + P+ IQ A+P+ L+ ++IA A +G+GKTAAF++ +
Sbjct: 619 SFRELRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVLTM 678
Query: 292 IERLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQA 351
+ R+ ++ + + L PT ELA Q+ +V + +GKF++ L A+ G N+ +
Sbjct: 679 LCRI---DVNLMCPQCICLAPTLELAKQIGEVVEKMGKFIDNLKIHYAIKGGNMAAM-RG 734
Query: 352 LKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRML-EEGFQEELQEIMSLIPS 410
K IVI TPG D+L+ + LV+DEAD M+ +GF + I +++
Sbjct: 735 RKLTEQIVIGTPGITRDYLQKYKCIDPSKIRCLVLDEADVMIYHQGFTDISTTIYNMVED 794
Query: 411 KR---QTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPA 467
Q++LFSAT + + +M+ +QA + Q +++ RD K A
Sbjct: 795 ASDSVQSMLFSATYDEPVINFATKIIKNAIVVMLKREEQALPNIKQFYVQCACRDS-KYA 853
Query: 468 LLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNF 527
+ L L S V+F K + L + G QV LHG +T +R ++ +F
Sbjct: 854 AIVNLYSGLAVASS---VIFCHTKASVMWLYENMRARGHQVDVLHGDMTVVERADTIIHF 910
Query: 528 KSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTY-----------------EIYLHRVG 570
K VLI T++ +RG+D+ ++ VVIN+D+P Y E YLHR+G
Sbjct: 911 KRGDFKVLITTNVFARGIDVAQVSVVINYDLPIKYTDEGTPMVVDGFTQPDCETYLHRIG 970
Query: 571 RTARAGREGRSVTFV 585
RT R G+ G ++ +
Sbjct: 971 RTGRFGKTGIAINLI 985
>SPBC12C2.06 [A] KOG0332 ATP-dependent RNA helicase
Length = 503
Score = 154 bits (389), Expect = 5e-37
Identities = 109/365 (29%), Positives = 185/365 (49%), Gaps = 28/365 (7%)
Query: 233 KTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLG--KDIIAGAVTGSGKTAAFMIP 290
K+F L L +LKG+ S+ + PS IQ A+P+ L +++I + +G+GKTAAF +
Sbjct: 114 KSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALT 173
Query: 291 IIERLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLT-FGLAVGGLNLRQQE 349
++ R+ A + + + L P+RELA Q+ DV +GK+ T FG+
Sbjct: 174 MLSRV---DASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIK------DSVP 224
Query: 350 QALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEE-GFQEELQEIMSLI 408
+ K IVI TPG +D L +++ V+DEAD ML++ G ++ I L+
Sbjct: 225 KGAKIDAQIVIGTPGTVMD-LMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLL 283
Query: 409 PSKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPAL 468
P Q +LFSAT + I + + + + + Q ++ + +H L
Sbjct: 284 PRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVL 343
Query: 469 --LYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNN 526
LY L+ + + ++F +K+TA ++ + G V L G+L QR +++
Sbjct: 344 VELYGLL------TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDS 397
Query: 527 FKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTY------EIYLHRVGRTARAGREGR 580
F+ VL+ T++ +RG+D+ ++ +V+N+DMP + YLHR+GRT R GR G
Sbjct: 398 FRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGV 457
Query: 581 SVTFV 585
S+ FV
Sbjct: 458 SINFV 462
>YLR276c [A] KOG0346 RNA helicase
Length = 594
Score = 152 bits (385), Expect = 1e-36
Identities = 124/417 (29%), Positives = 208/417 (49%), Gaps = 72/417 (17%)
Query: 234 TFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGK-DIIAGAVTGSGKTAAFMIPII 292
TF + L +L+ + ++G+ P+ IQS AIP+AL K DIIA A TGSGKT A++IP+I
Sbjct: 18 TFEAFHLDSRLLQAIKNIGFQYPTLIQSHAIPLALQQKRDIIAKAATGSGKTLAYLIPVI 77
Query: 293 ERLLYKPAHIAS-----TRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQ 347
E +L I + T ++L PTRELA QV +V + K V + + ++
Sbjct: 78 ETILEYKKTIDNGEENGTLGIILVPTRELAQQVYNV---LEKLVLYCSKDIRTLNISSDM 134
Query: 348 QEQALKT----RPDIVIATPGRFIDHLRNSA-SFSVDSVEILVIDEADRMLEEGFQEELQ 402
+ L T +P+I++ TPG+ +D L+ S S++ ++ LV+DE D +L G+Q++L
Sbjct: 135 SDSVLSTLLMDQPEIIVGTPGKLLDLLQTKINSISLNELKFLVVDEVDLVLTFGYQDDLN 194
Query: 403 EIMSLIPSKR--QTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPK--QAADKLTQEFIRI 458
+I +P K+ QT L SAT+N P + + + + +KL Q ++++
Sbjct: 195 KIGEYLPLKKNLQTFLMSATLNDDIQALKQKFCRSPAILKFNDEEINKNQNKLLQYYVKV 254
Query: 459 RKRDHLKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGM------------ 506
+ D LL +I KL N + + ++FV + ++L++V+ G+
Sbjct: 255 SEFDKF---LLCYVIFKL-NLIKGKTLIFVNNIDRGYRLKLVMEQFGIKSCILNSELPVN 310
Query: 507 -------------------------------QVGELHGSLTQEQRL---QSVNNFK-SLQ 531
++ E H + QE++ + N+ K S +
Sbjct: 311 SRQHIVDQFNKNVYQLLIATDDTEYIKEEDDEIEEGHNTENQEEKSLEGEPENDKKPSKK 370
Query: 532 VPVLICTDL---ASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFV 585
V + D SRG+D + V+NFD+P T + Y+HRVGRTAR G+ G +++FV
Sbjct: 371 KKVQVKKDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRVGRTARGGKTGTAISFV 427
>Hs9966805 [A] KOG0347 RNA helicase
Length = 859
Score = 152 bits (384), Expect = 2e-36
Identities = 106/312 (33%), Positives = 161/312 (50%), Gaps = 43/312 (13%)
Query: 308 VVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKTRPDIVIATPGRFI 367
+VLTPTRELA+QV + +F G+ + VGG++ ++Q++ L RP+IV+ATPGR
Sbjct: 391 LVLTPTRELAVQVKQHIDAVARFT-GIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRLW 449
Query: 368 D-------HLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPS-----KRQTL 415
+ HLRN + + LV+DEADRM+E+G EL +++ ++ KRQTL
Sbjct: 450 ELIKEKHYHLRN-----LRQLRCLVVDEADRMVEKGHFAELSQLLEMLNDSQYNPKRQTL 504
Query: 416 LFSATMNXXXXXXXXXXXXXPVRIM---------------------IDPPKQAADKLTQE 454
+FSAT+ + M ID + A T
Sbjct: 505 VFSATLTLVHQAPARILHKKHTKKMDKTAKLDLLMQKIGMRGKPKVIDLTRNEATVETLT 564
Query: 455 FIRIRKRDHLKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGS 514
+I K LY + + R +VF +L +L +L + LH
Sbjct: 565 ETKIHCETDEKDFYLYYFLMQYPG----RSLVFANSISCIKRLSGLLKVLDIMPLTLHAC 620
Query: 515 LTQEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTAR 574
+ Q+QRL+++ F L+ VL+ TD+A+RGLDIPK++ VI++ +P+T EIY+HR GRTAR
Sbjct: 621 MHQKQRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTAR 680
Query: 575 AGREGRSVTFVG 586
A EG S+ +G
Sbjct: 681 ATNEGLSLMLIG 692
Score = 55.8 bits (133), Expect = 2e-07
Identities = 29/63 (46%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 235 FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGK-DIIAGAVTGSGKTAAFMIPIIE 293
+ L + RPVL+ L LG+++P+PIQ+ + A+ K DI+ A TGSGKT AF IP+I
Sbjct: 194 WKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIPMIH 253
Query: 294 RLL 296
+L
Sbjct: 254 AVL 256
>At5g62190 [A] KOG0331 ATP-dependent RNA helicase
Length = 671
Score = 152 bits (383), Expect = 2e-36
Identities = 121/359 (33%), Positives = 190/359 (52%), Gaps = 28/359 (7%)
Query: 240 LSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKP 299
+S P+ + L + G + PIQ++ + L G D++ A TG GKT AF++PI+E L+ P
Sbjct: 103 ISAPLREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGP 162
Query: 300 A-------HIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQAL 352
A + S V+VL PTRELA QVA G + GL+ GG + QE L
Sbjct: 163 AKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYGGSL-GLSSCCLYGGDSYPVQEGKL 221
Query: 353 KTRPDIVIATPGRFIDHL-RNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLI--P 409
K DIV+ TPGR DH+ R + FS ++ V+DEAD ML GF E+++ I+ +
Sbjct: 222 KRGVDIVVGTPGRIKDHIERQNLDFSY--LQFRVLDEADEMLRMGFVEDVELILGKVEDS 279
Query: 410 SKRQTLLFSATMNX---XXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKP 466
+K QTLLFSAT+ + ++ + +A++ + I K
Sbjct: 280 TKVQTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNSVRHIAIPCNK------ 333
Query: 467 ALLYQLIRKLDN--TSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSV 524
A + +LI + + +S + ++F ET ++ + GLL LHG + Q QR ++
Sbjct: 334 AAMARLIPDIISCYSSGGQTIIFA---ETKVQVSELSGLLDGS-RALHGEIPQSQREVTL 389
Query: 525 NNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVT 583
F++ + L+ T++A+RGLDI ++++I + P+ E Y+HR GRT RAG G +VT
Sbjct: 390 AGFRNGKFATLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGNTGVAVT 448
>At1g12770_1 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 543
Score = 152 bits (383), Expect = 2e-36
Identities = 113/410 (27%), Positives = 183/410 (44%), Gaps = 59/410 (14%)
Query: 233 KTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPII 292
K+F L L +L L G++ P+ +QSAA+P + G D + + TGSGKT A+++PI+
Sbjct: 110 KSFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPIL 169
Query: 293 ERL-----LYKPAHIASTR-----VVVLTPTRELAIQVA-DVGKNIGKFVNGLTFGLAVG 341
+ + +H + + +++ P+REL +Q+ +V K +G + L G
Sbjct: 170 SEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVGG 229
Query: 342 GLNLRQQEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEEL 401
+RQ+E K +P IV+ TPGR I + LV+DE D +L F+E++
Sbjct: 230 ANRMRQEEALKKNKPAIVVGTPGR-IAEISKGGKLHTHGCRFLVLDEVDELLSFNFREDI 288
Query: 402 QEIMSLIPSK--------------RQTLLFSATMNXXXXXXXXXXXXXPVRIM------- 440
I+ + + RQT+L SAT+ PV +
Sbjct: 289 HRILEHVGKRSGAGPKGEVDERANRQTILVSATVPFSVIRAAKSWSHEPVLVQANKVTPL 348
Query: 441 -----------IDPPKQAADKLTQEFIR-----------IRKRDHLKPALLYQLIRKLDN 478
+ P AD Q I+ I K H K L + + LD
Sbjct: 349 DTVQPSAPVMSLTPTTSEADGQIQTTIQSLPPALKHYYCISKHQH-KVDTLRRCVHALDA 407
Query: 479 TSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQVPVLICT 538
S ++ F+ + L GM E+HG L + R + FK+ ++ VL+
Sbjct: 408 QS---VIAFMNHSRQLKDVVYKLEARGMNSAEMHGDLGKLGRSTVLKKFKNGEIKVLVTN 464
Query: 539 DLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGES 588
+L++RGLD+ + ++V+N ++P Y HR GRT R GR+G VT ES
Sbjct: 465 ELSARGLDVAECDLVVNLELPTDAVHYAHRAGRTGRLGRKGTVVTVCEES 514
>SPBC691.04 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 535
Score = 151 bits (381), Expect = 4e-36
Identities = 112/416 (26%), Positives = 201/416 (47%), Gaps = 24/416 (5%)
Query: 239 SLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKD-IIAGAVTGSGKTAAFMIPIIERLLY 297
SLS L G+ +P+Q + ++ + A TG+GKT AF++ + +L
Sbjct: 44 SLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLK 103
Query: 298 KPAHIASTRV--VVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKT- 354
+ S+++ V+L+PTRELA+Q+ + + + + G+ A+GG + ++E A++
Sbjct: 104 GKPRLNSSKIHSVILSPTRELALQIFEEARKL-TYGTGIRVSYAIGGNSKMREENAIRRG 162
Query: 355 RPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPS-KRQ 413
+++IATPGR DHL+N S + ++DEADR+++ GF E + I + + K +
Sbjct: 163 NANLLIATPGRLEDHLQNPRILESLSTDSFILDEADRLMDMGFAESILNIHEAVTTTKTR 222
Query: 414 TLLFSATMNXXXXXXXXXXXXXPVRIM--IDPPKQAADKLTQEFIRIRKRDHLKPALLYQ 471
L FSATM +++ +DP + + +F+ K D + + L
Sbjct: 223 KLCFSATMPPKVSNVFRGILGTDFKLINCLDPNEPPTHERVPQFVIETKLDKVFSSSLSL 282
Query: 472 LIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGE----LHGSLTQEQRLQSVNNF 527
L + + RI+VF+ T + V G+L + LH LT QR +F
Sbjct: 283 LQQLTSSNPSSRIIVFLP---TISMVDFVGGVLENHLKIPCFILHSGLTTAQRRSITESF 339
Query: 528 KSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGE 587
+ Q +L TD+ +RG+D P I V+ P + Y+HR+GRT RAG+ G + + E
Sbjct: 340 RKCQSGILFATDVVARGMDFPNITQVVQITGPSNTDDYIHRIGRTGRAGKTGEAYLILLE 399
Query: 588 -------SSQDRSIVRSAIRSVEENAES--GKALSRNVDWTQVEQVNSLIGAKGDV 634
S + + R+ I + + A S + ++ +++ + +L G+K V
Sbjct: 400 QEKPFLNSIKHLPLKRATIEPLSDQALSTLRSDIEKSSKFSRTNALKTLYGSKPHV 455
>At4g34910 [A] KOG0346 RNA helicase
Length = 626
Score = 149 bits (377), Expect = 1e-35
Identities = 115/407 (28%), Positives = 189/407 (46%), Gaps = 54/407 (13%)
Query: 233 KTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPII 292
K+F L L +++ L G P+ IQ +AIP L GKD++A A TGSGKT A+++P++
Sbjct: 46 KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLL 105
Query: 293 ERLLYKPAHIASTRVV----VLTPTRELAIQV-ADVGKNIGKFVNGLTFGLAVGGLNLRQ 347
++ L+ ++ ++ +L P+REL QV +V I L ++
Sbjct: 106 QK-LFSADSVSKKKLAPSAFILVPSRELCQQVYTEVSSLIELCRVQLKAVQLTSSMSASD 164
Query: 348 QEQALKTRPDIVIATPG----RFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQE 403
AL P+I+++TP F + + S +S+ ILV+DEAD +L G+++ L+
Sbjct: 165 MRNALAGLPEILVSTPACIPKCFAAGVLEPTAVS-ESLSILVLDEADLLLSYGYEDNLRS 223
Query: 404 IMSLIPSKRQTLLFSATMNXXXXXXXXXXXXXPVRIMI----DPPKQAADKLTQEFIRIR 459
+ S+IP + Q LL SAT + P+ + + D + + Q +I
Sbjct: 224 VTSIIPRRCQCLLMSATTSSDVEKLKKLILHNPIVLTLTEDNDKEEAVPSNVQQFWISCS 283
Query: 460 KRDHLKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQ 519
+D L L + KL+ QK+I++F+ + +L++ L G++ L+G L Q
Sbjct: 284 AQDKLLHIL---ALLKLE-VVQKKILIFINTIDMGFRLKLFLEKFGIKSAILNGELPQNS 339
Query: 520 RLQSVNNFKSLQVPVLICTDLAS-----------------------------------RG 544
RL + F + LI TD S RG
Sbjct: 340 RLHILEQFNAGLFDYLIATDDNSQTKKQKEEAKGEANKENKKNNKRSKPKLDAEFGVVRG 399
Query: 545 LDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESSQD 591
+D K+ VINFDMP++ Y+HR+GRT RA G SV+ + +
Sbjct: 400 IDFKKVHTVINFDMPQSVTGYIHRIGRTGRAYSSGSSVSLISPDEME 446
>At4g09730 [A] KOG0331 ATP-dependent RNA helicase
Length = 496
Score = 149 bits (377), Expect = 1e-35
Identities = 117/379 (30%), Positives = 177/379 (45%), Gaps = 49/379 (12%)
Query: 227 AKKIVHKTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAA 286
+KK+V + F L LS V+ L L P+ IQ IP + K ++ G+ TGSGKT A
Sbjct: 107 SKKLV-ENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLA 165
Query: 287 FMIPIIERL----------LYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTF 336
+++PI++ L L K R VVL PTREL+ QV + + + F
Sbjct: 166 YLLPIVQVLSELMREDEANLGKKTKPRRPRTVVLCPTRELSEQVC-----LHQDYHHARF 220
Query: 337 G--LAVGGLNLRQQEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLE 394
L GG +R QE +L D+V+ TPGR + H+ + + LV+DEAD M +
Sbjct: 221 RSILVSGGSRIRPQEDSLNNAIDMVVGTPGRILQHI-EEGNMVYGDIAYLVLDEADTMFD 279
Query: 395 EGFQEELQEIMSLIPSKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKL--- 451
GF E+++ F A +N V+ ++D Q + L
Sbjct: 280 RGFGPEIRK-------------FLAPLNQHIKVVNEIVSFQAVQKLVDEEFQGIEHLRTS 326
Query: 452 ---------TQEFIRIRKRDHLKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLG 502
+FI++ + ALL L L S +++VF ++ + L
Sbjct: 327 TLHKKIANARHDFIKLSGGEDKLEALLQVLEPSLAKGS--KVMVFCNTLNSSRAVDHYLS 384
Query: 503 LLGMQVGELHGSLTQEQRLQSVNNFKSLQ--VPVLICTDLASRGLDIPKIEVVINFDMPK 560
+ HG + EQR++++ FK + P L+CTDLA+RGLD+ ++ V+ FD PK
Sbjct: 385 ENQISTVNYHGEVPAEQRVENLKKFKDEEGDCPTLVCTDLAARGLDL-DVDHVVMFDFPK 443
Query: 561 TYEIYLHRVGRTARAGREG 579
YLHR GRTAR G +G
Sbjct: 444 NSIDYLHRTGRTARMGAKG 462
>Hs4826688 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 439
Score = 149 bits (375), Expect = 2e-35
Identities = 112/367 (30%), Positives = 181/367 (48%), Gaps = 37/367 (10%)
Query: 242 RPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAH 301
+P L+ + + +PIQ+A G +I A TG+GKT AF++PI+ R+ K
Sbjct: 4 KPALQAQFEQQFKAQTPIQAAVWEKLAQGDNIFGLAPTGTGKTLAFLLPILSRIDPK--- 60
Query: 302 IASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKTRPDIVIA 361
+ T+V++L P++ELA+Q V + G V+ L G RQ ++ K +P IV+
Sbjct: 61 VKQTQVLILAPSQELAMQTTAVAREWGALVDVSVTSLIGGANGRRQADKLKKDKPHIVVG 120
Query: 362 TPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKRQTLLFSAT- 420
T GR + L A ++ ++ ++ DEAD ML + ++ LQ + + +P+ Q LFSAT
Sbjct: 121 TLGRVLTMLDGGA-LKLNGLQTVIFDEADAMLSDERRDSLQALAAQLPTDVQLGLFSATS 179
Query: 421 -MNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQLIRKLDNT 479
++ PV + D P +T EF + ++ K +LL QL R
Sbjct: 180 GVDLKYVADTFGQEVRPVSVGTDAPAA----ITHEFQYVDQK--AKASLLIQLARN---- 229
Query: 480 SQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLT----------QEQRLQSVNNFKS 529
Q+ +V F + GL+ MQ H + Q QR ++ FK
Sbjct: 230 KQQALVFF----------NTISGLVNMQATLRHAHASVMSIGSNDKRQVQRADALRLFKK 279
Query: 530 LQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESS 589
+V +L+ TD+A+RGLDI + +V+N +P+ + Y+HR GRT R G+ GR V +G
Sbjct: 280 GEVSLLLVTDVAARGLDIEDLPLVVNAQLPQRKKTYIHRAGRTGRMGKPGR-VLNLGNDH 338
Query: 590 QDRSIVR 596
R + R
Sbjct: 339 DIRDLKR 345
>Hs8922976 [A] KOG0330 ATP-dependent RNA helicase
Length = 540
Score = 148 bits (374), Expect = 3e-35
Identities = 116/381 (30%), Positives = 183/381 (47%), Gaps = 33/381 (8%)
Query: 234 TFNSLSLSRPVLKGLGSLG--YTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPI 291
+F L L VL L P+ +QS+ IP L G+ ++ A TGSGKT ++++P+
Sbjct: 127 SFADLGLEPRVLHALQEAAPEVVQPTTVQSSTIPSLLRGRHVVCAAETGSGKTLSYLLPL 186
Query: 292 IERLLYKPA----HIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQ 347
++RLL +P+ I + R +VL P+RELA QV V + +G+ + L L GG +R+
Sbjct: 187 LQRLLGQPSLDSLPIPAPRGLVLVPSRELAQQVRAVAQPLGRSLGLLVRDLE-GGHGMRR 245
Query: 348 QEQALKTRP--DIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIM 405
L +P D+++ATPG L+ S S++ + LV+DEAD +L+E F E + I+
Sbjct: 246 IRLQLSRQPSADVLVATPGALWKALK-SRLISLEQLSFLVLDEADTLLDESFLELVDYIL 304
Query: 406 SL-------------IPSKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAA--DK 450
K Q +L AT I K
Sbjct: 305 EKSHIAEGPADLEDPFNPKAQLVLVGATFPEGVGQLLNKVASPDAVTTITSSKLHCIMPH 364
Query: 451 LTQEFIRIRKRDHLKPALLYQLIRKLDNTSQK----RIVVFVARKETAHKLRIVLGLLGM 506
+ Q F+R++ D K A L +++ D + ++VF T + L +L +
Sbjct: 365 VKQTFLRLKGAD--KVAELVHILKHRDRAERTGPSGTVLVFCNSSSTVNWLGYILDDHKI 422
Query: 507 QVGELHGSLTQEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYL 566
Q L G + R+ +F+ +L+CTD+ASRGLD +E+V+N+D P T + Y+
Sbjct: 423 QHLRLQGQMPALMRVGIFQSFQKSSRDILLCTDIASRGLDSTGVELVVNYDFPPTLQDYI 482
Query: 567 HRVGRTARAGRE--GRSVTFV 585
HR GR R G E G ++FV
Sbjct: 483 HRAGRVGRVGSEVPGTVISFV 503
>At4g15850 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 474
Score = 148 bits (373), Expect = 3e-35
Identities = 114/402 (28%), Positives = 191/402 (47%), Gaps = 75/402 (18%)
Query: 251 LGYTSPSPIQSAA----IPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAHIASTR 306
+G +S P+Q A I +DI + TGSGKT ++ +PI++ L +P + R
Sbjct: 1 MGISSLFPVQVAVWHETIGPGGFERDICVNSPTGSGKTLSYALPIVQLLASRP--VRCLR 58
Query: 307 VVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQ------------------ 348
+V+ PTR+LA+QV DV I V GL+ G AVG ++ +
Sbjct: 59 ALVVLPTRDLALQVKDVFDAIAPAV-GLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDP 117
Query: 349 ---EQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIM 405
Q L++ DI++ATPGR +DH+ N+ F+++ + LV+DE DR+L E +Q L ++
Sbjct: 118 DDLSQNLESAVDILVATPGRLMDHINNTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVL 177
Query: 406 --------SLIPS---------------KRQT---------------LLFSATMNXXXXX 427
SL PS +RQ+ ++ SAT+
Sbjct: 178 QLTQTSDDSLFPSFTPFVPSAFGSLQTVRRQSVERGFKGKPYPRLVKMVLSATLTQDPSK 237
Query: 428 XXXXXXXXPVRIMIDPPK-QAADKLTQEFIRIRKRDHLKPALLYQLIRKLDNTSQKRIVV 486
P+ + + + +KL E +R+ +KP L L++ + ++ ++
Sbjct: 238 LIQLDLHHPLFMTTGGSRYRLPEKL--ECLRLICETGMKPVYLVALLKSWEG---EKCII 292
Query: 487 FVARKETAHKLRIVLGLLG---MQVGELHGSLTQEQRLQSVNNFKSLQVPVLICTDLASR 543
F + ET +L +L G ++ E G L Q R + + F+ + VL+ +D +R
Sbjct: 293 FTSSVETTRRLCKLLNFFGDPKIKAKEYSGGLNQSLRSKELKAFRKGDIQVLVASDALTR 352
Query: 544 GLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFV 585
G+D+ + VIN+DMP + ++HR GRTARAG+ GR T +
Sbjct: 353 GMDVKGVTNVINYDMPPFAKTFIHRAGRTARAGQAGRCFTLL 394
>CE27728 [A] KOG0346 RNA helicase
Length = 634
Score = 147 bits (372), Expect = 4e-35
Identities = 108/398 (27%), Positives = 184/398 (46%), Gaps = 52/398 (13%)
Query: 232 HKTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPI 291
HKTF L +LK +G LG+ + +Q + I +AL K+I+ A TGSGKT AF+IP+
Sbjct: 88 HKTFADFGLDERILKSIGELGWEKANQVQESVISLALENKNIMGRARTGSGKTGAFLIPL 147
Query: 292 IERLLYKPA---HIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQ 348
+++L+ + V++ PT+EL Q+ K K L F A+ ++ ++
Sbjct: 148 VQKLIAESKTNDGSVGPSAVIIAPTKELITQIY---KLFVKLSQALPFLQAINLCDINEE 204
Query: 349 EQA--LKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMS 406
E + L+ R +V+ TPG+ + + V LV+DEAD +L G++EE+ +I S
Sbjct: 205 ENSVWLEDRSHVVVTTPGKLLRMCSLRPEYCT-LVSYLVMDEADLLLSFGYEEEMIKIRS 263
Query: 407 LIPSKRQTLLFSATMNXXXXXXXXXXXXXPVRI--MIDPPKQAADKLTQEFIRIRKRDHL 464
+P Q L+ SAT+ PV + + +D+LTQ + +
Sbjct: 264 KLPPTYQCLMTSATLKDDMTTLKKLFMTGPVITIKLTEGDLPNSDQLTQYQLTCGSDEER 323
Query: 465 KPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSV 524
L+ KL R ++FV + +KL ++L + G++ L+ ++ R +
Sbjct: 324 FAILVAMFKLKL---IVGRSILFVNTIDRCYKLMLILRVFGLKSCILNSAMPANSRCHVI 380
Query: 525 NNFKSLQVPVLICTDLA--------------------------------------SRGLD 546
N F ++I +D++ SRG+D
Sbjct: 381 NQFNEGSYQIVIASDVSDADGSKLKEEIAGKSDEKPEKDEKKGKKASKLDKESGVSRGID 440
Query: 547 IPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTF 584
+ V+NFD P+T + Y+HRVGRTAR +G +++F
Sbjct: 441 FHHVSNVVNFDFPETTDAYIHRVGRTARGFNKGTALSF 478
>CE03821 [A] KOG0345 ATP-dependent RNA helicase
Length = 578
Score = 147 bits (372), Expect = 4e-35
Identities = 102/348 (29%), Positives = 176/348 (50%), Gaps = 8/348 (2%)
Query: 243 PVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAHI 302
P L + Y S + +Q + L D++ + TGSGKT AF++P++ +
Sbjct: 19 PELLEVFDKSYKSFTDVQVLSGTHLLNLSDVVVESPTGSGKTLAFVLPMMRMIQNAKLQP 78
Query: 303 ASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKTRP-DIVIA 361
A ++L+P+REL Q+ V + + +N LT GG + + + K + +I++A
Sbjct: 79 ADIGALILSPSRELCSQIVSVIQPFAEKLN-LTVETVTGGQKVDKNIKMFKNKNVNILVA 137
Query: 362 TPGRF---IDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKRQTLLFS 418
TPGR I H + + + ++++LVIDEADR E F++ ++EI+S IP +R+T LFS
Sbjct: 138 TPGRLFQIIQHEKTLIARKMRTLQLLVIDEADRFNEIQFEDHMREILSCIPKQRRTGLFS 197
Query: 419 ATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQLIRKLDN 478
AT ++ + + +A T + + R K ++ + IR+
Sbjct: 198 ATQVKEEDDLMVFGLRNAKQVKVAQERNSAAPSTLKNYYVECRADEKTSVCLEFIRQ--R 255
Query: 479 TSQKRIVVFVARKETAHKLRIVLGLLGMQ-VGELHGSLTQEQRLQSVNNFKSLQVPVLIC 537
T +K ++ F + + +I LG + + +HG + R + F V+I
Sbjct: 256 TDKKILIFFPSCNSVRYFYKIFERCLGKRPLFAVHGKCSNPHRASQIKAFSDSTNGVMIS 315
Query: 538 TDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFV 585
TD+ +RG+DI I+ VI FD+PK ++HR GRTAR GREG ++ +
Sbjct: 316 TDVMARGIDISDIDWVIQFDLPKHSSWFVHRAGRTARCGREGNALILI 363
>CE06239 [A] KOG0344 ATP-dependent RNA helicase
Length = 581
Score = 146 bits (368), Expect = 1e-34
Identities = 117/405 (28%), Positives = 195/405 (47%), Gaps = 42/405 (10%)
Query: 235 FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 294
F+ S+S +L L PSPIQ +IP ++++A A TGSGKT AF +P+I+
Sbjct: 128 FSDSSMSPSLLNRLSENSIRQPSPIQMQSIPFMTERRNVLASAPTGSGKTLAFALPVIDE 187
Query: 295 LL-------YKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTF--GLAVGGLNL 345
+L Y ++ + VVL PTRELA Q + L + ++ N
Sbjct: 188 ILELKQRADYSSSNSSKLLAVVLEPTRELAAQT---------YTEFLKYCANTSISAANF 238
Query: 346 RQQEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLE--EG----FQE 399
+E ++ DI+++TP R + HL S+ LV+DE+DR+ E EG F+
Sbjct: 239 SGEETDIQ-HADILVSTPNRIVFHLDK---IDTSSLRWLVVDESDRLFEVVEGQDKCFRN 294
Query: 400 ELQEIMSLIPSK-RQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRI 458
+L I +K + FSAT + + + + + Q+
Sbjct: 295 QLAAIYKACDAKCTRVAFFSATFSHEVEKWCKENIDEIGMVCVGERNSSNTSVKQKLTYC 354
Query: 459 RKRDHLKPALLYQLIRKLDNTSQKR-IVVFVARKETAHKLRIVLGLL--GMQVGELHGSL 515
D K A IR L TS K +VFV K+ A +L +L + ++V ++
Sbjct: 355 GTEDGKKIA-----IRNLLRTSFKPPALVFVQSKDRAVQLVKLLSAIDSNLKVDSINSGK 409
Query: 516 TQEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARA 575
+ ++R +++ F+ ++ VL+CT+L RGLD+ + +VIN+D+P + Y+HRVGRT RA
Sbjct: 410 SDKERDETMERFRRGEIWVLVCTELLGRGLDLSDVGLVINYDLPTSIVSYIHRVGRTGRA 469
Query: 576 GREGRSVTFVGESSQD-----RSIVRSAIRSVEENAESGKALSRN 615
G+ G +VT+ ++ +++R + V E K +SR+
Sbjct: 470 GKSGHAVTYFTDADMKYIKSIATVIRQSGFDVPEYLMEMKKVSRD 514
>Hs21327697 [A] KOG0332 ATP-dependent RNA helicase
Length = 369
Score = 145 bits (367), Expect = 2e-34
Identities = 101/344 (29%), Positives = 169/344 (48%), Gaps = 19/344 (5%)
Query: 251 LGYTSPSPIQSAAIPIALLG--KDIIAGAVTGSGKTAAFMIPIIERLLYKPAHIASTRVV 308
+G+ PS IQ A+P+ L +++IA + +G+GKTAAF++ ++ R+ A + +
Sbjct: 1 MGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRV---NALELFPQCL 57
Query: 309 VLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKTRPDIVIATPGRFID 368
L PT ELA+Q V + +GKF + A+ G + + K I+I TPG +D
Sbjct: 58 CLAPTYELALQTGRVVEQMGKFCVDVQVMYAIRGNRIPRGTDITK---QIIIGTPGTVLD 114
Query: 369 HLRNSASFSVDSVEILVIDEADRMLE-EGFQEELQEIMSLIPSKRQTLLFSATMNXXXXX 427
+ + + V+DEAD M++ +GF + I +PS+ Q LLFSAT
Sbjct: 115 WCFKLKLIDLTKIRVFVLDEADVMIDTQGFSDHSIRIQRALPSECQMLLFSATFEDSVWH 174
Query: 428 XXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQLIRKLDNTSQKRIVVF 487
P I + + + + Q ++ R AL + + + ++F
Sbjct: 175 FAERIIPDPNVIKLRKEELTLNNIRQYYVLCEHRKDKYQALC----NIYGSITIGQAIIF 230
Query: 488 VARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQVPVLICTDLASRGLDI 547
+ A L + + G QV L G LT EQR + F+ + VLI T++ +RG+D+
Sbjct: 231 CQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDV 290
Query: 548 PKIEVVINFDMP------KTYEIYLHRVGRTARAGREGRSVTFV 585
++ +V+NFD+P YE YLHR+GRT R G++G + +
Sbjct: 291 KQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMI 334
>CE29052 [A] KOG0335 ATP-dependent RNA helicase
Length = 1156
Score = 145 bits (367), Expect = 2e-34
Identities = 117/401 (29%), Positives = 207/401 (51%), Gaps = 38/401 (9%)
Query: 256 PSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYK-------PAHIASTRVV 308
P+PIQ A+ + G D++A A TGSGKT AF+IP + +L+ + S R++
Sbjct: 759 PTPIQRASFFPIMHGNDVVACAHTGSGKTLAFLIPFVIKLMEEFEKDRDVTDEKPSPRLL 818
Query: 309 VLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKT--RPDIVIATPGRF 366
++ PTREL Q + + + GL GLA GG + Q L++ + +I++AT GR
Sbjct: 819 IVAPTRELVNQTFTTARQL-TYETGLKCGLAFGGYSRNANVQHLRSFSQLNILVATMGRL 877
Query: 367 IDHLRNSASFSVDSVEILVIDEADRMLEEG-FQEELQEIMSLIPSKR--QTLLFSATMNX 423
D + N+ S+ ++ +V+DEADRM++ F EE+ +I+ P +R QT+LFSA+ +
Sbjct: 878 QDFV-NAGEVSLSKMKYIVLDEADRMVDSNDFGEEVSKIIGS-PGERTQQTVLFSASFSE 935
Query: 424 XXXXXXXXXXXXPVRIMIDPPK--QAADKLTQEFIRIRKRDHLKPALLYQLIRKLDNT-- 479
M+ K A +K+ Q+ + + + + K +Y+L+ +NT
Sbjct: 936 DLQSDDLPKFVKEGYTMLQVDKFGTANEKIDQKILPVPRTE--KRDAIYKLLGIDENTVT 993
Query: 480 -------SQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQV 532
+++ ++FV + L ++ G+ +H QEQR +++++F+ +
Sbjct: 994 LLPDAPIEKQKTLIFVNSVKFCDTLAALISSAGVSTISMHSYQNQEQRDRTLDDFRRGKY 1053
Query: 533 PVLICTDLASRGLDIPKIEVVINFDMP--KTYEIYLHRVGRTARAGREGRSVTFVG-ESS 589
++ +++ +RGL+I ++ V+N+DMP ++ Y++R+GRT RAG G S FV E+
Sbjct: 1054 QCMVASNVCARGLNIAGLDHVVNYDMPDKNGFDEYVNRIGRTGRAGFTGTSTAFVDVEND 1113
Query: 590 QD-----RSIVRSAIRSVEE--NAESGKALSRNVDWTQVEQ 623
D SI+ A + V E +G DW + EQ
Sbjct: 1114 TDIIPCLVSILNEAKKEVPEWLTEGAGHQEEGGDDWNEQEQ 1154
>7302399 [A] KOG0347 RNA helicase
Length = 813
Score = 145 bits (366), Expect = 2e-34
Identities = 107/324 (33%), Positives = 164/324 (50%), Gaps = 43/324 (13%)
Query: 308 VVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKTRPDIVIATPGRFI 367
+VLTPTRELA+QV + K+ G+ GGL + +QE+ L+ PDIV+ATPGR
Sbjct: 344 LVLTPTRELAVQVKNHLVAAAKYT-GIRVAAIFGGLAVAKQERVLRQCPDIVVATPGRLW 402
Query: 368 DHLR--NSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPS------KRQTLLFSA 419
+ N ++ V LVIDE DRM+E+G EEL+ ++ ++ S +RQ ++SA
Sbjct: 403 ELYAQGNRHLGKIEDVSFLVIDETDRMVEKGHFEELRSLLKVLNSDEQKKHQRQNFVYSA 462
Query: 420 TMNXXX---------------------------XXXXXXXXXXPVRIMIDPPKQAADKLT 452
T+ P + I +Q A LT
Sbjct: 463 TLTLVHDLPDHMQKRNVGKRPKFVKQTVDQKIESLIEELGISQPKIVDITSSQQTAQTLT 522
Query: 453 QEFIRIRKRDHLKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELH 512
+ + + DH K LY I++ R +VF + +L + GLL LH
Sbjct: 523 ESRL-LCPIDH-KDYHLYYFIQRHPG----RTIVFCNSIDCVKRLATLFGLLDCNPLPLH 576
Query: 513 GSLTQEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRT 572
++ Q+QRL+++ F+ +LI TD+A+RGLDIP +E VI++ +P+T E Y+HR GRT
Sbjct: 577 ANMIQKQRLKNLERFRDSPTGLLIATDVAARGLDIPNVEHVIHYQVPRTSENYVHRSGRT 636
Query: 573 ARAGREGRSVTFVGESSQDRSIVR 596
ARA + G +V F+ E + +S V+
Sbjct: 637 ARANKHGITVMFM-EPGEVKSYVK 659
Score = 53.5 bits (127), Expect = 1e-06
Identities = 26/63 (41%), Positives = 41/63 (64%), Gaps = 1/63 (1%)
Query: 235 FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGK-DIIAGAVTGSGKTAAFMIPIIE 293
+N L + +L+ LG G+ +P+ IQ+ +P A+ GK DI+ A TGSGKT AF IP++
Sbjct: 217 WNGLGVPASILRALGEQGFKTPTQIQALTLPAAIHGKKDILGAAETGSGKTLAFGIPMLA 276
Query: 294 RLL 296
++
Sbjct: 277 GIM 279
>ECU02g1520 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 425
Score = 145 bits (365), Expect = 3e-34
Identities = 115/399 (28%), Positives = 202/399 (49%), Gaps = 41/399 (10%)
Query: 228 KKIVHKTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAF 287
K +V + F+ + LS +LK + + G+ PS IQ +AIP L G +++ + +G+GKT A+
Sbjct: 46 KLLVAEHFSDMGLSDELLKAIYNQGFEKPSLIQKSAIPHILRGHNVVVQSKSGTGKTIAY 105
Query: 288 MIPIIERLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQ 347
++ T+V+V+TPTREL+ QV +V ++GL L + + +
Sbjct: 106 TCGVLGNTKIGER----TQVMVVTPTRELSTQVTEV-------ISGLAGPLGIKVFSALK 154
Query: 348 QEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQ-EELQEIMS 406
+ ++V+ +PG + L + V+++V+DEAD +L++ + I+
Sbjct: 155 NKITDSIGEEVVVGSPGTILK-LMELGKLNYKGVKMIVLDEADILLDKDMMGTQTFRILK 213
Query: 407 LIPSKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIR---KRDH 463
LI S Q + FSAT + V+ M + D++ +I KR
Sbjct: 214 LI-SGAQMIFFSATFSEQVKQTIEFYAPDAVK-MYEERNGKPDEIKLFYIEAEGENKRRA 271
Query: 464 LKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQS 523
LK LY+ + S ++++FV+ K T + LR L V LHG L E+R ++
Sbjct: 272 LKS--LYEYL------SISQMIIFVSTKATVNYLRKKLEDDLHSVSCLHGDLEIEEREKA 323
Query: 524 VNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMP-----KTYEIYLHRVGRTARAGRE 578
V +F+S + +L+ TD+ SRG+DIP++ +++N+D+P + + Y+HR+GR+ R GR
Sbjct: 324 VGDFRSSKSKILLTTDVFSRGMDIPQVNLIVNYDLPIYRGVASTQTYIHRIGRSGRFGRT 383
Query: 579 GRSVTFVGESSQDRSI----------VRSAIRSVEENAE 607
G V FV + + + + IR++EE AE
Sbjct: 384 GFVVDFVRDEELEAYLSFQKELKFASKKFTIRALEEVAE 422
>CE11402 [A] KOG0334 RNA helicase
Length = 995
Score = 145 bits (365), Expect = 3e-34
Identities = 119/403 (29%), Positives = 197/403 (48%), Gaps = 41/403 (10%)
Query: 226 DAKKIVHKT-FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKT 284
+A+K V T + + L +L+ L + Y + IQ A IP L G D++ A T +GKT
Sbjct: 373 NAEKDVRLTSWTNSGLHPTILETLKRIKYNNVRTIQGAMIPQVLDGHDVLGQAETSAGKT 432
Query: 285 AAFMIPIIERLLY-------KPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFG 337
AAF +PII+++L K ++L PTRELA Q+ + + + + +
Sbjct: 433 AAFGLPIIDKILRMDEETRNKARQDDGPLALILAPTRELAAQIHEALRTYCQNTDIIVL- 491
Query: 338 LAVGGLNLRQQEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGF 397
L+ G + + ++ DI+I T GR +D S S+ + LV DEADR+L++
Sbjct: 492 LSYGQSDRARSLNEIRNGCDILIGTCGRIMDFTVKS-HISLLHLRFLVFDEADRLLQDMK 550
Query: 398 QEELQEIMSLIP--------SKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAAD 449
++ L + ++I + RQT++ SAT N P +
Sbjct: 551 KDPLGHLGAIIKDAGFMESAATRQTIMTSATFNASVMTVANELMKRL------PGQDEMI 604
Query: 450 KLTQEFIRIRKRDHL----------KPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRI 499
K+ R+ KR +L K A L +++++ N + ++FV +K+
Sbjct: 605 KIVLANGRLSKRVNLEFFECKGLAEKNAKLREILKQNVNGKTLKTIIFVQKKDQCDACAA 664
Query: 500 VLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMP 559
L GM LHG +Q+ R + +N+FKS +V +L+ TDL SRG+D+ ++ VINFD+P
Sbjct: 665 KLTSGGMLAQTLHGDRSQDMREKLINDFKSNRVNLLVTTDLLSRGIDVSDLDRVINFDLP 724
Query: 560 -----KTYEIYLHRVGRTARAGRE--GRSVTFVGESSQDRSIV 595
+ + ++HR GRT R GR+ G V+FV S S++
Sbjct: 725 DGDPDQGADTFIHRAGRTGRTGRKENGLCVSFVDPQSDRDSLL 767
>HsM7019399 [A] KOG0332 ATP-dependent RNA helicase
Length = 369
Score = 144 bits (364), Expect = 4e-34
Identities = 101/344 (29%), Positives = 168/344 (48%), Gaps = 19/344 (5%)
Query: 251 LGYTSPSPIQSAAIPIALLG--KDIIAGAVTGSGKTAAFMIPIIERLLYKPAHIASTRVV 308
+G+ PS IQ A+P+ L +++IA + +G+GKTAAF++ ++ R+ A + +
Sbjct: 1 MGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRV---NALELFPQCL 57
Query: 309 VLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKTRPDIVIATPGRFID 368
L PT ELA+Q V + +GKF + A+ G + + K I+I TPG +D
Sbjct: 58 CLAPTYELALQTGRVVEQMGKFCVDVQVMYAIRGNRIPRGTDITK---QIIIGTPGTVLD 114
Query: 369 HLRNSASFSVDSVEILVIDEADRMLE-EGFQEELQEIMSLIPSKRQTLLFSATMNXXXXX 427
+ + + V+DEAD M++ +GF + I +PS+ Q LLFSAT
Sbjct: 115 WCFKLKLIDLTKIRVFVLDEADVMIDTQGFSDHSIRIQRALPSECQMLLFSATFEDSVWH 174
Query: 428 XXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQLIRKLDNTSQKRIVVF 487
P I + + + + Q ++ R AL + + + ++F
Sbjct: 175 FAERIIPDPNVIKLRKEELTLNNIRQYYVLCEHRKDKYQALC----NIYGSITIGQAIIF 230
Query: 488 VARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQVPVLICTDLASRGLDI 547
+ A L + + G QV L G LT EQR F+ + VLI T++ +RG+D+
Sbjct: 231 CQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASITQRFRDGKEKVLITTNVCARGIDV 290
Query: 548 PKIEVVINFDMP------KTYEIYLHRVGRTARAGREGRSVTFV 585
++ +V+NFD+P YE YLHR+GRT R G++G + +
Sbjct: 291 KQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMI 334
>7294064 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 687
Score = 144 bits (364), Expect = 4e-34
Identities = 122/443 (27%), Positives = 205/443 (45%), Gaps = 73/443 (16%)
Query: 256 PSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAHIASTRVVVLTPTRE 315
P +++ A P +DI A TGSGKT AF IPI++ L + R +V+ P E
Sbjct: 169 PWILEAHAKPPPFRPRDICVSAPTGSGKTLAFAIPIVQLLSQRVD--CKVRALVVLPVAE 226
Query: 316 LAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALK--------TRPDIVIATPGRFI 367
LA+QV V + L L L +++ L ++ DIV+ TPGR +
Sbjct: 227 LALQVYRVISELCSKTE-LEVCLLSKQHKLEDEQEKLVEQYKGKYYSKADIVVTTPGRLV 285
Query: 368 DHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQ------------------------E 403
DHL + F + S++ LVIDEADR+++ FQ L E
Sbjct: 286 DHLHATKGFCLKSLKFLVIDEADRIMDAVFQNWLYHLDSHVKETTDQLLAGTQAPLCYAE 345
Query: 404 IMSLIPSKRQTLLFSATMNXXXXXXXXXXXXXP--------VRIMIDPPKQAAD------ 449
+ + + LLFSAT++ P + ++ D ++ AD
Sbjct: 346 LQASFGKQPHKLLFSATLSQDPEKLQDLRLFQPRLFATVLTMPVLKDATEEGADTEALTD 405
Query: 450 ------------KLTQEFIRIRKRDHLKPALLYQLIRKLDNTSQKRIVVFVARKETAHKL 497
+LT+++ R LKP ++ L+ K KR + F + A +L
Sbjct: 406 PGQFVGRYTTPAELTEQYCVTELR--LKPLTVFALVEKY---KWKRFLCFTNSSDQATRL 460
Query: 498 RIVLGLL----GMQVGELHGSLTQEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVV 553
VL +L +V EL G+L+ + R + + +F + ++ LIC+D +RG+D+ ++VV
Sbjct: 461 TFVLKVLFQKYSTKVSELSGNLSAKVRNERLRDFAAGKINGLICSDALARGIDVADVDVV 520
Query: 554 INFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESSQDRSIVRSAIRSVEENAESGKALS 613
++++ P+ Y+HRVGRTARAGR+G +VT + E QD ++ + + + +S
Sbjct: 521 LSYETPRHITTYIHRVGRTARAGRKGTAVTVLTE--QDMTLFKKILSDANKGLGEEIHVS 578
Query: 614 RNVDWTQ-VEQVNSLIGAKGDVV 635
+++ VE +L G + + V
Sbjct: 579 PDIEIQHAVEYKEALAGLRSEKV 601
>At3g06980 [A] KOG0331 ATP-dependent RNA helicase
Length = 781
Score = 144 bits (362), Expect = 6e-34
Identities = 113/380 (29%), Positives = 185/380 (47%), Gaps = 31/380 (8%)
Query: 233 KTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPII 292
KTF + S ++K L + P+ IQ+ A + GK I +GSGKT A+++P+I
Sbjct: 374 KTFAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVI 433
Query: 293 ERLLYKP--AHIAST----RVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAV--GGLN 344
+RL + H S+ RV+VL PT ELA QV ++I K +G+ F V GG
Sbjct: 434 QRLREEELQGHSKSSPGCPRVIVLVPTAELASQVLANCRSISK--SGVPFRSMVVTGGFR 491
Query: 345 LRQQEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRML-EEGFQEELQE 403
R Q + L+ D++IATPGRF +L N + ++ ++DE D + ++ F+ LQ
Sbjct: 492 QRTQLENLEQGVDVLIATPGRFT-YLMNEGILGLSNLRCAILDEVDILFGDDEFEAALQN 550
Query: 404 IMSLIPSKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRD- 462
+++ P Q L +AT+ +++ P +EF+ D
Sbjct: 551 LINSSPVTAQYLFVTATLPLEIYNKLVEVFPD-CEVVMGPRVHRVSNALEEFLVDCSGDD 609
Query: 463 --HLKPALLYQ-----LIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELH--- 512
P +Q L++ ++ + ++F + ET K+ + + + +LH
Sbjct: 610 NAEKTPETAFQNKKTALLQIMEENPVSKTIIFCNKIETCRKVENIFKRVDRKERQLHVLP 669
Query: 513 --GSLTQEQRLQSVNNFKSLQVP----VLICTDLASRGLDIPKIEVVINFDMPKTYEIYL 566
+L+QE RL ++ F S Q L+CTD ASRG+D ++ V+ FD P+ Y+
Sbjct: 670 FHAALSQESRLTNMQEFTSSQPEENSLFLVCTDRASRGIDFSGVDHVVLFDFPRDPSEYV 729
Query: 567 HRVGRTARAGR-EGRSVTFV 585
RVGRTAR R +G++ FV
Sbjct: 730 RRVGRTARGARGKGKAFIFV 749
>SPCC1494.06c [A] KOG0346 RNA helicase
Length = 595
Score = 142 bits (358), Expect = 2e-33
Identities = 103/328 (31%), Positives = 171/328 (51%), Gaps = 10/328 (3%)
Query: 233 KTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPII 292
KTF+ +L + + + + P+ +QS IP+AL GKD++A A TGSGKTAA++IPI+
Sbjct: 14 KTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPIL 73
Query: 293 ERLLYKPAHIASTR---VVVLTPTRELAIQVADVGKNIGKFVN-GLTFGLAVGGLNLRQQ 348
E LL + + R ++L PTRELA QV +V + + F + + F + Q
Sbjct: 74 ELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQ 133
Query: 349 EQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLI 408
L PDIVIATP R + H+ S +D ++ LVIDEAD ML G+ E+++ + +
Sbjct: 134 RPLLLDLPDIVIATPSRCVVHVA-SGVLPLDKLKFLVIDEADLMLSFGYNEDMKTLSRSL 192
Query: 409 PSKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPAL 468
P Q+ L SAT++ P I+ K+A+ KLTQ ++ ++D L
Sbjct: 193 PRGTQSFLMSATLSKNIASLQKLVCRNPF-ILAVKDKEASGKLTQYVVKCSEQDKF---L 248
Query: 469 LYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFK 528
L ++ KL + +I++FV ++L++ L G++ L+ L RL + +
Sbjct: 249 LAYILLKL-RLIKGKILIFVNEINRCYRLKLFLEQFGLKSLVLNSELPVNSRLHILEQYN 307
Query: 529 SLQVPVLICTDLASRGLDIPKIEVVINF 556
++I TD + +I ++E ++F
Sbjct: 308 KGLYQIIIATDESGMMGEIEELENNVDF 335
Score = 57.0 bits (136), Expect = 1e-07
Identities = 24/49 (48%), Positives = 35/49 (70%)
Query: 542 SRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESSQ 590
+RGLD + V+NFDMP + Y+HR+GRTARAG+ G +++FV S+
Sbjct: 387 ARGLDFENVACVLNFDMPSNTKSYIHRIGRTARAGKPGTAMSFVVPKSE 435
>Hs22054507 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 729
Score = 141 bits (356), Expect = 3e-33
Identities = 105/349 (30%), Positives = 172/349 (49%), Gaps = 55/349 (15%)
Query: 234 TFNSLS--LSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPI 291
+F SLS ++ LK + + + + + IQ I L G+D++A A TGS + +
Sbjct: 368 SFASLSNLVNENTLKAIKEMSFMNMTEIQHKTIRSLLEGRDLLAAAKTGS-------VEL 420
Query: 292 IERLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQA 351
+L + P + V +L+PTRELA+Q+ G N T+GL +GG N + Q
Sbjct: 421 TVKLKFMPTNRPG--VFILSPTRELAMQIFG-GANTHHMH---TYGLIMGGDNTSAEAQK 474
Query: 352 LKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSK 411
L +I++ATPG +D+++N+ F +++ LVIDEADR+L+ GF+EEL++I+ L+P+
Sbjct: 475 LANGINIIVATPGHLLDYMQNTPGFMYKNLQYLVIDEADRILDVGFEEELKQIIKLLPTC 534
Query: 412 RQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQ 471
R T+L SAT A L + I+ RKR
Sbjct: 535 RHTMLLSATQTRKVEDL------------------ARISLKKGAIKNRKR---------- 566
Query: 472 LIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQ 531
+I+VF + + +L + + + +HG Q + + F
Sbjct: 567 -----------KIMVFFSSSMSVKYHYELLNYMDLPILAIHGKQKQNKGTTTFFQFCKAD 615
Query: 532 VPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGR 580
+L+C D+A+RGLDIP+++ ++ D + Y+HRV RTAR G GR
Sbjct: 616 SGILLCMDVAARGLDIPEVDWIVQHDPLDDPKEYIHRVSRTAR-GLNGR 663
>CE01338 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 363
Score = 140 bits (354), Expect = 5e-33
Identities = 99/373 (26%), Positives = 186/373 (49%), Gaps = 20/373 (5%)
Query: 238 LSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLY 297
+ L +L+G+ G+ PS IQ +A+ GKD+ + GSGKT +I I++ +
Sbjct: 1 MELKEELLRGIYGFGFEKPSAIQKSAVAPCTTGKDVTIQSQAGSGKTVISLIDILQGIDC 60
Query: 298 KPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKTRPD 357
+ AH+ +V++L P R +A + + K++G+ +N L G + + +
Sbjct: 61 EDAHL---QVILLAPQRGMAQRAHEQLKSLGRNLNVNATCL---GFDTTAENDKIS---H 111
Query: 358 IVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKRQTLLF 417
+++ TP F+ ++ + S +++ V+DEAD ML +GF++++ E+ +P Q +L
Sbjct: 112 VLMGTPKDFLSNIPSDTS----RIKMFVLDEADEMLSKGFKDQIYEVFRSMPQDVQVVLL 167
Query: 418 SATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQLIRKLD 477
SATM P+RI++ + + + Q +I ++K D K L L++
Sbjct: 168 SATMPSEVLDVTNRFMRDPIRILVKKDELTLEGIRQFYINVQK-DEWKFNCLCDLLK--- 223
Query: 478 NTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQVPVLIC 537
+ + + ++F + +L L + ++V HG++ +R V +F S VL+
Sbjct: 224 TSRETQALIFCNTRRRVTQLTEQLMSIPIKVSCFHGNMEHNEREDMVKDFNSRNTRVLVT 283
Query: 538 TDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGES--SQDRSIV 595
TDL +RG++I K ++IN+D+ E Y+ R GR G +G ++F E+ S + I
Sbjct: 284 TDLMARGMNIRK-SLIINYDVSGNMENYMLRNGRQGNFGSKGLPISFFTENDISDLKKIE 342
Query: 596 RSAIRSVEENAES 608
+EE ES
Sbjct: 343 NHYSTRIEEMPES 355
>Hs20551983 [A] KOG0345 ATP-dependent RNA helicase
Length = 325
Score = 140 bits (353), Expect = 7e-33
Identities = 100/300 (33%), Positives = 159/300 (52%), Gaps = 13/300 (4%)
Query: 244 VLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAHIA 303
VL L LG+ +P+QSA IP+ + KD+ A AVTGSGKT AF+IPI+E LL + +
Sbjct: 20 VLGALRELGFPYMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLK 79
Query: 304 STRV--VVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKTR-PDIVI 360
++V +++TPTRELAIQ+ +V + K + L +GG N + + K + +I++
Sbjct: 80 KSQVGAIIITPTRELAIQIDEVLSHFTKHFPEFSQILWIGGRNPGEDVERFKQQGGNIIV 139
Query: 361 ATPGRFIDHLRNSA-----SFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKRQTL 415
ATPGR D R A + V S+++LV+DEADR+L+ GF+ + I+ +P +R+T
Sbjct: 140 ATPGRLEDMFRRKAEGLDLASCVRSLDVLVLDEADRLLDMGFEASINTILEFLPKQRRTG 199
Query: 416 LFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPA--LLYQLI 473
LFSAT PVR+ + AA + R+ + A QL+
Sbjct: 200 LFSATQTQEVENLVRAGLRNPVRVSVKEKGVAASSAQKTPSRLENYYMVCKADEKFNQLV 259
Query: 474 RKLDNTSQKRIVVFVARKETAHKLRIVLGLL--GMQVGELHGSLTQEQRLQSVNNFKSLQ 531
L N Q++ +VF + L +L G+++ +HG + + +R + F+ LQ
Sbjct: 260 HFLRNHKQEKHLVFFSTCACVEYYGKALEVLVKGVKIMCIHGKM-KYKRNKIFMEFRKLQ 318
>YKR024c [A] KOG0348 ATP-dependent RNA helicase
Length = 742
Score = 137 bits (346), Expect = 5e-32
Identities = 123/434 (28%), Positives = 200/434 (45%), Gaps = 80/434 (18%)
Query: 235 FNSLSLSRPVLKGLGS-LGYTSPSPIQSAAIP--IALLGK-DIIAGAVTGSGKTAAFMIP 290
F SL +S ++ L + P+ IQ AIP I GK D A TGSGKT ++++P
Sbjct: 145 FASLGVSSLLVSHLEQKMRIKKPTSIQKQAIPQIIGNAGKNDFFIHAQTGSGKTLSYLLP 204
Query: 291 IIERLLYKPAHIASTR---VVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQ 347
II +L H+ T +V+ PTRELA Q+ V + + L L +GG +
Sbjct: 205 IISTILNMDTHVDRTSGAFALVIAPTRELASQIYHVCSTLVSCCHYLVPCLLIGGERKKS 264
Query: 348 QEQALKTRPDIVIATPGRFIDHLRNSASFS---VDSVEILVIDEADRMLEEGFQEELQEI 404
++ L+ + +I TPGR +DHL+N+ S+ +V+DE D+++E GF E + EI
Sbjct: 265 EKARLRKGCNFIIGTPGRVLDHLQNTKVIKEQLSQSLRYIVLDEGDKLMELGFDETISEI 324
Query: 405 MSLI-------------PSKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKL 451
+ ++ P K +L SAT+ +++ + K+ +D +
Sbjct: 325 IKIVHDIPINSEKFPKLPHKLVHMLCSATL-TDGVNRLRNVALKDYKLISNGTKKDSDIV 383
Query: 452 TQEFIRIRKRDHLKP--ALLYQLIRKLDNTSQK-----------RIVVFVA--------- 489
T ++ +R + P L L L+N ++ R +VFV+
Sbjct: 384 TVAPDQLLQRITIVPPKLRLVTLAATLNNITKDFIASGQQSKTLRTIVFVSCSDSVEFHY 443
Query: 490 ----------RKETAHKLRIVLGLLGM------------QVGELHGSLTQEQRLQSVNNF 527
+ T +R++ M + +LHGSL+Q+ R ++ +F
Sbjct: 444 DAFSGSDGHHKNLTGDSVRLLTKGNTMFPCFSDSRDPDVVIYKLHGSLSQQMRTSTLQHF 503
Query: 528 ---------KSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGRE 578
K L ++ CTD+ASRGLD+P + VI D P E +LHRVGRTARAG +
Sbjct: 504 ARDNEATKGKHL---IMFCTDVASRGLDLPHVGSVIELDPPFAVEDHLHRVGRTARAGEK 560
Query: 579 GRSVTFVGESSQDR 592
G S+ F+ +++
Sbjct: 561 GESLLFLLPGEEEK 574
>YNR038w [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 629
Score = 136 bits (342), Expect = 1e-31
Identities = 115/393 (29%), Positives = 196/393 (49%), Gaps = 47/393 (11%)
Query: 272 DIIAGAVTGSGKTAAFMIPIIERLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFV 331
DI+ A TGSGKT A+ IPI++ L + I R +++ PT+ L QV + K
Sbjct: 229 DILVNAATGSGKTLAYSIPIVQTLFKR--QINRLRCIIIVPTKLLINQVYTT---LTKLT 283
Query: 332 NGLTFGLAVGGL--NLRQQEQALKT-RPDIVIATPGRFIDHLRNSASFSVDSVEILVIDE 388
G + +++ L +L+ + + L PDI+I TPGR +DHL N S ++ +++ L+IDE
Sbjct: 284 QGTSLIVSIAKLENSLKDEHKKLSNLEPDILITTPGRLVDHL-NMKSINLKNLKFLIIDE 342
Query: 389 ADRMLEEGFQEELQEIMS--------LIPSKRQTLLFSATMNXXXXXXXXXXXXXPVRIM 440
ADR+L + FQ ++MS +P ++FSAT+ P +
Sbjct: 343 ADRLLNQSFQGWCPKLMSHLKTDKLDTLPGNVIKMIFSATLTTNTEKLNGLNLYKPKLFL 402
Query: 441 IDPPK--QAADKLTQEFIRI-RKRDHLKPA-LLYQLIRKLDNTS-QKRIVVFVARKETAH 495
K Q +KL + I I + KP LLY + + + ++ +I++FV E++
Sbjct: 403 KQTDKLYQLPNKLNEFNINIPTAKSVYKPLILLYSICQFMAHSPIAAKILIFVKSNESSI 462
Query: 496 KLRIVLGL----------------LGMQVGELHGSLTQEQRLQSVNNF----KSLQVPVL 535
+L +L L L + + ++ + ++ + + V NF +S + +L
Sbjct: 463 RLSKLLQLICESRSQSSVLKNLQNLAVSINSVNSNNSKAENKKIVANFSHHSESAGITIL 522
Query: 536 ICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVT-FVGESSQDRSI 594
I TD+ SRG+DI I VIN+D P + + Y+HRVGRTARA G + VG +R+
Sbjct: 523 ITTDIMSRGIDINDITQVINYDPPMSSQQYVHRVGRTARANELGSAYNLLVGRG--ERTF 580
Query: 595 VRSAIRSVEENAESGKALSRNVDWTQVEQVNSL 627
+ ++ + +S + L +D+T +E + L
Sbjct: 581 FDDLNKDLDRDGKSVQPL--ELDFTLLESDSEL 611
>7296165 [A] KOG0330 ATP-dependent RNA helicase
Length = 536
Score = 135 bits (339), Expect = 3e-31
Identities = 109/377 (28%), Positives = 182/377 (47%), Gaps = 24/377 (6%)
Query: 251 LGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPA----HIASTR 306
LG + IQ +P+ + + A TG GKT +++PI+++LL K + + R
Sbjct: 127 LGIKLLTGIQKQGMPVVHGNEHCLIAAETGCGKTITYLLPIVDKLLQKEVVTERKLNTPR 186
Query: 307 VVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKTRPDIVIATPGRF 366
V++LTP RELA Q+A V + + + N L +GG + DI++AT G
Sbjct: 187 VLILTPGRELATQIAGVTEKLTQGTN-LKVQSLLGGNTKQLMMNPQFEEVDILVATLGA- 244
Query: 367 IDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIP--------SKRQTLLFS 418
+ L + + ++ V LV+DEAD +L++ F ++L + P + Q +L S
Sbjct: 245 LSKLVTTGIYRMEQVRHLVLDEADTLLDDTFTDKLSYFLRRFPFHLVQKEDAGTQMILAS 304
Query: 419 ATM-NXXXXXXXXXXXXXPVRIMIDPP-KQAADKLTQEFIRIRKRDHLKPALLYQLIRKL 476
ATM +R ++ P + +TQ+F+R+ K D +PA L L+ K
Sbjct: 305 ATMPTNTREILHKVIDVDTIREVVSPHLHRLMSHVTQKFLRLSKAD--RPATLLSLV-KH 361
Query: 477 DNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQVPVLI 536
D ++ ++VF + T+ + I L G+ L+G + + RL F++ VL
Sbjct: 362 DLAKRRPLIVFSNKSTTSDFVSIFLNNSGVNCLNLNGDMLMKIRLGRFEQFQNGHCDVLS 421
Query: 537 CTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRS-VTFVGESSQDRSIV 595
TD+ SRGLD + V+NFD P Y+HR GR R G ++ VT + S ++ +V
Sbjct: 422 TTDVGSRGLDTTRARHVVNFDFPLHVSDYIHRCGRIGRVGNMDKALVTNLISSRREIDVV 481
Query: 596 RSAIRSVEENAESGKAL 612
+ +E A +G L
Sbjct: 482 ----QRIEHAARTGGLL 494
>CE28485 [K] KOG4284 DEAD box protein
Length = 963
Score = 132 bits (333), Expect = 1e-30
Identities = 97/348 (27%), Positives = 173/348 (48%), Gaps = 24/348 (6%)
Query: 259 IQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAHIASTRVVVLTPTRELAI 318
I++ A+ A+ D++ A +G+GKT F + +E L + +HI V++TPTRE+++
Sbjct: 39 IRAWALKTAIFS-DMLVQAKSGTGKTLVFSVLAVENLDSRSSHIQK---VIVTPTREISV 94
Query: 319 QVADVGKNIGKFVNGLTFGLAVGG----LNLRQQEQALKTRPDIVIATPGRFIDHLRNSA 374
Q+ + + + G + VGG LNL +Q TRP IVI TPGR I L
Sbjct: 95 QIKETVRKVAP--TGARTSVYVGGSAHKLNLIDLKQ---TRPQIVIGTPGR-IAQLVKLG 148
Query: 375 SFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKRQTLLFSAT--MNXXXXXXXXXX 432
+ ++ V+ V+DEAD++++E F++++ I++ +P RQ +FSAT N
Sbjct: 149 AMNMSHVDFFVLDEADKLMDEVFRDDINIIINSLPQIRQVAVFSATYPRNLDNLLSTFLR 208
Query: 433 XXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQLIRKLDNTSQKRIVVFVARKE 492
VR D + K +++ + +L +L L + + +VF +
Sbjct: 209 DAALVRFNADDVQLFGIK---QYVVAK-----CSPMLEKLTHVLKSIRYVQALVFCDQIS 260
Query: 493 TAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEV 552
+ L G+ V + +++Q+ R +V+ ++ +V +L+ +DL +RG+D + +
Sbjct: 261 KCEPIATHLKSSGLDVTFVSSAMSQKDRQLAVDQLRAKRVKILVSSDLTARGIDADNVNL 320
Query: 553 VINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESSQDRSIVRSAIR 600
V+N D E Y HR+GR AR G G +VT + + + A R
Sbjct: 321 VVNIDAAANEETYFHRIGRAARFGAHGAAVTLLEDERALKGFTALAYR 368
>At1g71280 [A] KOG0345 ATP-dependent RNA helicase
Length = 465
Score = 129 bits (323), Expect = 2e-29
Identities = 96/321 (29%), Positives = 151/321 (46%), Gaps = 43/321 (13%)
Query: 240 LSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIE---RLL 296
LS +++ L G+ +P+Q+ IP KD++ A TGSGKT AF++P IE R
Sbjct: 24 LSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSN 83
Query: 297 YKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLA---VGGLNLRQQEQALK 353
P V+++PTREL+ Q+ V + + L F +N ++E A
Sbjct: 84 SYPPKPHQVMGVIISPTRELSAQIHKVARAVR-----LDFAKCREVEADMNTLEEEGA-- 136
Query: 354 TRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKRQ 413
+++I TPGR D ++ ++EIL++DEADR+L+ GFQ+++ I+S +P +R+
Sbjct: 137 ---NLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRR 193
Query: 414 TLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQLI 473
T LFSAT P K AD+ + QL+
Sbjct: 194 TGLFSATQTQAVADLAKAGLRNPYL------KCEADQKSS-----------------QLV 230
Query: 474 RKLDNTSQKRIVVFVARKETAHKLRIVL----GLLGMQVGELHGSLTQEQRLQSVNNFKS 529
L K++VVF +V+ L + HG + Q+ R ++ +F
Sbjct: 231 HLLIENKNKKLVVFFMTCACVDYWGLVISKIPSLKSISFFPTHGKMDQKGRDTALASFTE 290
Query: 530 LQVPVLICTDLASRGLDIPKI 550
VL+CTD+A+RGLDIP I
Sbjct: 291 ASSGVLLCTDVAARGLDIPGI 311
>Hs21040373 [A] KOG0329 ATP-dependent RNA helicase
Length = 316
Score = 117 bits (293), Expect = 6e-26
Identities = 65/190 (34%), Positives = 115/190 (60%), Gaps = 6/190 (3%)
Query: 235 FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 294
F L +L+ + G+ PS +Q IP A+LG D++ A +G GKTA F++ +++
Sbjct: 46 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 105
Query: 295 LLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKT 354
+ +P + V+V+ TRELA Q++ + K++ + + GGL++++ E+ LK
Sbjct: 106 I--EPVN-GQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKK 162
Query: 355 R-PDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEE-GFQEELQEIMSLIPSKR 412
P +V+ TPGR + +RN SFS+ +V+ V+DE D+MLE+ + ++QEI L P ++
Sbjct: 163 NCPHVVVGTPGRILALVRNR-SFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEK 221
Query: 413 QTLLFSATMN 422
Q ++FSAT++
Sbjct: 222 QCMMFSATLS 231
>Hs20336298 [A] KOG0348 ATP-dependent RNA helicase
Length = 585
Score = 116 bits (290), Expect = 1e-25
Identities = 95/361 (26%), Positives = 166/361 (45%), Gaps = 50/361 (13%)
Query: 228 KKIVHKTFNSLSLSRPVLKGLGS-LGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAA 286
K F+ L L ++ + + L +S + +Q +IP+ L G+D + + TGSGKT A
Sbjct: 225 KVFTSAAFHELGLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLA 284
Query: 287 FMIPIIERLLYKPAHIASTR---VVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGL 343
+ IP+++ L + I + +VL PTRELA+Q D + + K + G+ +GG
Sbjct: 285 YCIPVVQSLQAMESKIQRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGE 344
Query: 344 NLRQQEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQE 403
+ ++ L+ +I+I+TPGR +DH++++ + + LV DEADR+L+ GF++++
Sbjct: 345 KRKSEKARLRKGINILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITV 404
Query: 404 IMSLIPS---KRQTLLFSATMNXXXXXXXXXXXXXPVRI--------MIDP--------- 443
I++ + + KRQ +L SAT+ PV I ++P
Sbjct: 405 ILNAVNAECQKRQNVLLSATLTEGVTRLADISLHDPVSISVLDKSHDQLNPKDKAVQEVC 464
Query: 444 PKQAADKLTQEFIRIRKRDHLK--------PALLYQLIRKLDNTSQKRIVVFVARKETAH 495
P A DKL I + H+ L +++K +++VVF + E
Sbjct: 465 PPPAGDKLDSFAIPESLKQHVTVVPSKLRLVCLAAFILQKCKFEEDQKMVVFFSSCELVE 524
Query: 496 -----KLRIVLGLLG-------------MQVGELHGSLTQEQRLQSVNNFKSLQVPVLIC 537
L+ +L G ++ LHG + QE+R F + VL+C
Sbjct: 525 FHYSLFLQTLLSSSGAPASGQLPSASMRLKFLRLHGGMEQEERTAVFQEFSHSRRGVLLC 584
Query: 538 T 538
T
Sbjct: 585 T 585
>CE27336 [A] KOG0334 RNA helicase
Length = 436
Score = 115 bits (287), Expect = 3e-25
Identities = 95/298 (31%), Positives = 137/298 (45%), Gaps = 53/298 (17%)
Query: 287 FMIPIIERLLYKPAHIASTRV-VVLTPTRELAIQVADVGKNIGKFVN--GLTFGLAVGGL 343
F I + E L P + V+LTPTRELA+Q K KF GL GG+
Sbjct: 98 FYIEVRENPLEAPLEEGDGPIAVILTPTRELAMQTY---KEANKFAKPLGLKVACTYGGV 154
Query: 344 NLRQQEQALKTRPDIVIATPGRFIDHLRNSAS--FSVDSVEILVIDEADRMLEEGFQEEL 401
+ +Q LK +IV+ TPGR ID L ++ ++ V LV+DEADRM +GF+ ++
Sbjct: 155 GISEQIADLKRGAEIVVCTPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFHKGFEPQV 214
Query: 402 QEIMSLIPSKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKR 461
+ + T N Q+F++
Sbjct: 215 --------GGKSVVCSDITQNAVICAEH-----------------------QKFLK---- 239
Query: 462 DHLKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQ-VGELHGSLTQEQR 520
LL L D S +VFV ++E A + L G V LHG + Q R
Sbjct: 240 ------LLELLGMYYDEGSS---IVFVDKQEKADDIVDQLMRTGYNSVASLHGGIDQHDR 290
Query: 521 LQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGRE 578
S+ +FK+ + VL+ T +A+RGLD+ + +V+N+D P YE Y+HRVGRT RAGR+
Sbjct: 291 DSSIADFKTGVIKVLVATSVAARGLDVKNLILVVNYDCPNHYEDYVHRVGRTGRAGRK 348
>ECU06g1250 [A] KOG0337 ATP-dependent RNA helicase
Length = 465
Score = 112 bits (281), Expect = 2e-24
Identities = 100/358 (27%), Positives = 168/358 (45%), Gaps = 62/358 (17%)
Query: 229 KIVHKTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFM 288
KI +F ++ L +L+ ++ Y P+PIQ IP+ L + ++ TGSGKT ++
Sbjct: 6 KIKGGSFKTMGLDYRLLR---NILYEGPTPIQRKTIPLILERRSLMGVGRTGSGKTLCYL 62
Query: 289 IPIIERLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQ 348
IP I+R I+ + +V+ PT+EL IQ V K + + +
Sbjct: 63 IPAIQRA------ISGEKTLVIVPTKELVIQARRVLKRLARGI----------------- 99
Query: 349 EQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLI 408
E+A K I I TPG+ I+ + S ++LV+DE DR+LEE L+ + I
Sbjct: 100 EEAWKL---IEICTPGK-IEGM---------SADMLVVDEIDRILEE---PSLKSVFDRI 143
Query: 409 PSKR--QTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKP 466
Q + FSAT+ P+ + + + ++ + F + +
Sbjct: 144 NESLSCQKVFFSATLPDH-----------PLNMKVVEIETRINETVKHFFFYIPSESKEA 192
Query: 467 ALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNN 526
ALL R LD T ++ +VF A K L +L + ++ S+ E R + +
Sbjct: 193 ALL----RILDKT--RKTIVFAATKYAVELLLEILNKNNFESRGIYSSMDDEARRANFRD 246
Query: 527 FKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTF 584
F + + +L+ TD+A+RGLDIP ++ V+N+D+ +LHRVGR G + VT+
Sbjct: 247 FNTSKFSILVVTDVAARGLDIPYLDTVVNYDLCDE-RTFLHRVGRVRGMGVQYSFVTY 303
>CE00456 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 696
Score = 112 bits (280), Expect = 2e-24
Identities = 96/377 (25%), Positives = 177/377 (46%), Gaps = 41/377 (10%)
Query: 256 PSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAHIASTRVVVLTPTRE 315
PS P L +D+ A TGSGKT +++P++ + KP+ I + V+L P +
Sbjct: 245 PSLFFEIRSPPPLRPRDVAIAAPTGSGKTICYVLPVLAAVGSKPSKIL--QAVILVPVQT 302
Query: 316 LAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQE--QALKTRPDIVIATPGRFIDHLRNS 373
L Q+ D K +G+ +++ G N ++E Q P++++ATP R + HL +
Sbjct: 303 LVAQIVDEFKRWND-ESGVAKVVSLSGANDFEKEARQLASDPPNVIVATPARLVQHLTSK 361
Query: 374 ASFSVD--SVEILVIDEADRM----LEE---------GFQEELQEIMSLIPSKR--QTLL 416
+D + L++DEADRM EE G E + + +I +R Q ++
Sbjct: 362 IPPPIDLSKLRFLIVDEADRMGKLMREEWLDLVEFLCGGMERVACLKDIIRQRRAPQKIV 421
Query: 417 FSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLT--QEFIRIRKRDHLKPALLYQLI- 473
SAT++ P R+ D + + + R L ++ ++L+
Sbjct: 422 LSATLSKDVEELHLWNLFKP-RLFSATAVSVKDITSGIPQVDHVSGRLALPSSISHRLVV 480
Query: 474 -----------RKLDNTSQKRIVVFVARKETAHKLRIVLGLL---GMQVGELHGSLTQEQ 519
+++ R ++FV ++++L VL L +V L ++
Sbjct: 481 TDPKFHPLAVYQQITRNKFNRTLIFVNEVSSSNRLAHVLKELCKDQFEVDYFTAQLFGKR 540
Query: 520 RLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREG 579
R + + F + VLIC+D+ +RG D+ K++ VIN+++P ++++HR GRT RAG++G
Sbjct: 541 RYKMLEKFNKNENRVLICSDVLARGTDLNKVDCVINYNLPADDKLFVHRAGRTGRAGQDG 600
Query: 580 RSVTFVGESSQDRSIVR 596
++ VG+ R V+
Sbjct: 601 YVIS-VGDKESKRLFVK 616
>ECU05g1270 [A] KOG0331 ATP-dependent RNA helicase
Length = 426
Score = 111 bits (278), Expect = 4e-24
Identities = 98/360 (27%), Positives = 172/360 (47%), Gaps = 41/360 (11%)
Query: 256 PSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAHIASTRVVVLTPTRE 315
P+ +Q IP L G+ + + TGSGKT ++++P I L R++V+ PTRE
Sbjct: 79 PTDVQRFVIPYILAGEGVDVISETGSGKTLSYVLPHIHLL-----ESGDKRLLVIVPTRE 133
Query: 316 LAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKTRP-DIVIATPGRFIDHLRNSA 374
L V+ VG+ KF GL + + G + ++ +RP D+ I+TPGR + L
Sbjct: 134 L---VSQVGQVFRKFSEGLLRIVEITGEVSIESQRLQVSRPFDVAISTPGRLRELLELK- 189
Query: 375 SFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKRQTLLFSATMNXXXXXXXXXXXX 434
S+ E +V+DEADR+++ + ++ I+ + + + FSAT
Sbjct: 190 --SIGGFEYVVVDEADRLMQHDIRSDVTFILERMKPEVAS-FFSAT---------PFEWS 237
Query: 435 XPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPA----------LLYQLIRKLDNTSQKRI 484
RI++ D + + F+ + K++ ++ L + + K+I
Sbjct: 238 GGTRILVGNVSVGRD-VEEFFMYVEKKEKMQVLGEILVSCEGWLAKNMGVDRNGLEVKKI 296
Query: 485 VVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQVPVLICTDLASRG 544
+VF T L Q+ LH T ++R + + + VLI TDL RG
Sbjct: 297 IVFCNSIRTCENLHKRF----RQLLVLHSRRTMQERKAVIEALEG-ERAVLIATDLGGRG 351
Query: 545 LDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESSQDRSIVRSAIRSVEE 604
+DI +++V+N+D+P+ + Y+HR GRT R R+G +++ + +DR I+ R VE+
Sbjct: 352 IDIKDVDLVVNYDLPRAVDGYVHRCGRTGRQ-RKGMALSMI--CREDREILPKLKRLVEK 408
>Hs17474878 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 645
Score = 109 bits (272), Expect = 2e-23
Identities = 92/379 (24%), Positives = 161/379 (42%), Gaps = 75/379 (19%)
Query: 233 KTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPII 292
+++ SL +L+ + GY +PIQ AIP L +DII
Sbjct: 308 RSWKESSLLPHILEVIDKCGYKESTPIQRQAIPFGLQNRDIIGR---------------- 351
Query: 293 ERLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQAL 352
+R +++ A + V+ GG++ L
Sbjct: 352 DRQVWEAARYPTVAVI--------------------------------GGISREDWGFRL 379
Query: 353 KTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKR 412
+IVIATPG ID L N + +V+DEADRM++ GF+ ++Q+I+ +P
Sbjct: 380 LMGCEIVIATPGHLIDVLENRY-LVLSCCTYVVLDEADRMIDVGFEPDVQKILEHMPQSE 438
Query: 413 QTLLFSATMNXXXXXXXXXXXXXPVRIMID---PPKQAADKLTQEFIRIRKRDHLKPALL 469
P +++ + ++ +++ Q F+ K
Sbjct: 439 ---------------ARHDESEDPEKMLANFESGKRKPHERVEQVFLMSESEKRKK---- 479
Query: 470 YQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKS 529
L+ L I +FV +K+ L L +G LHG QEQR +++N K
Sbjct: 480 --LLEILKQGFDPAITIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKP 537
Query: 530 LQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESS 589
VL+ TD+A G+DI + +V+N+DM K + Y+HR+GR +AG+ G ++TF+ +
Sbjct: 538 GAKDVLVTTDVAGHGIDIQDVSMVVNYDMAKNIDDYIHRIGRMGQAGKSGVAITFL--TK 595
Query: 590 QDRSIVRSAIRSVEENAES 608
+D ++ +++ E+ S
Sbjct: 596 EDSAVFYELKQAILESPVS 614
>7293348 [A] KOG0348 ATP-dependent RNA helicase
Length = 975
Score = 107 bits (268), Expect = 5e-23
Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 16/204 (7%)
Query: 259 IQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAHIA---STRVVVLTPTRE 315
+Q IP L GKD++ + TGSGKT A+ +P++E L + I +V+ PTRE
Sbjct: 354 VQQKTIPEVLQGKDVLVRSQTGSGKTLAYALPLVELLQKQQPRIQRKDGVLALVIVPTRE 413
Query: 316 LAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKTRPDIVIATPGRFIDHLRNSAS 375
L +Q ++ + + K + G +GG + + ++ L+ +I+I TPGR +DHL ++AS
Sbjct: 414 LVMQTYELIQKLVKPYTWIVPGSLLGGESRKSEKARLRKGINILIGTPGRLVDHLLHTAS 473
Query: 376 FSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKR-----------QTLLFSATMNXX 424
F + ++ L++DEADR+LE G++ ++++++ I +R Q +L SAT+
Sbjct: 474 FKLTKLQFLILDEADRLLELGYERDVKQLVEAIDKQRAECEDKELPQLQRMLLSATLTSQ 533
Query: 425 XXXXXXXXXXXPVRIMIDPPKQAA 448
P + ID +AA
Sbjct: 534 VQQLAGLTLKNP--LYIDNSDEAA 555
Score = 80.5 bits (197), Expect = 9e-15
Identities = 38/86 (44%), Positives = 58/86 (67%)
Query: 503 LLGMQVGELHGSLTQEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTY 562
L G++ +LHGS+TQ +R F+ VL+ TD+ RG+D+P I++V+ + P+T
Sbjct: 676 LQGLRFFKLHGSMTQTERQGVFRGFRDCASCVLLATDVVGRGIDVPDIKLVVQYTPPQTT 735
Query: 563 EIYLHRVGRTARAGREGRSVTFVGES 588
++HRVGRTARAGR+GR+V F+ S
Sbjct: 736 ADFVHRVGRTARAGRKGRAVLFLTPS 761
>CE26264 [A] KOG0335 ATP-dependent RNA helicase
Length = 328
Score = 105 bits (262), Expect = 3e-22
Identities = 71/233 (30%), Positives = 124/233 (52%), Gaps = 13/233 (5%)
Query: 378 VDSVEILVIDEADRMLEEGFQEELQEIMSL--IPSKRQ--TLLFSATM-NXXXXXXXXXX 432
++ LV+DEADRML+ GF+ ++++I+ +PSK + T +FSAT
Sbjct: 8 MEGCRYLVLDEADRMLDMGFEPQIRQIVECNRMPSKEERITAMFSATFPKEIQLLAQDFL 67
Query: 433 XXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQLIRKLDNTSQKRI-VVFVARK 491
V + + ++ + Q+ + + + + K + L L LD T + +VFV K
Sbjct: 68 KENYVFLAVGRVGSTSENIMQKIVWVEEDE--KRSYLMDL---LDATGDSSLTLVFVETK 122
Query: 492 ETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIE 551
A L L +V +HG L Q +R + ++ F++ P+L+ T +A+RGLDIP ++
Sbjct: 123 RGASDLAYYLNRQNYEVVTIHGDLKQFEREKHLDLFRTGTAPILVATAVAARGLDIPNVK 182
Query: 552 VVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESSQDRSIVRSAIRSVEE 604
VIN+D+P + Y+HR+GRT R G G + +F + ++R+I R + + E
Sbjct: 183 HVINYDLPSDVDEYVHRIGRTGRVGNVGLATSFFND--KNRNIARELMDLIVE 233
>CE29051 [A] KOG0335 ATP-dependent RNA helicase
Length = 1016
Score = 102 bits (254), Expect = 2e-21
Identities = 83/296 (28%), Positives = 152/296 (51%), Gaps = 28/296 (9%)
Query: 256 PSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYK-------PAHIASTRVV 308
P+PIQ A+ + G D++A A TGSGKT AF+IP + +L+ + S R++
Sbjct: 722 PTPIQRASFFPIMHGDDVVACAHTGSGKTLAFLIPFVIKLMEEFEKDRDVTDEKPSPRLL 781
Query: 309 VLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALK--TRPDIVIATPGRF 366
++ PTREL Q + + + GL GLA GG + Q L+ ++ +I++AT GR
Sbjct: 782 IVAPTRELVNQTFTTARQL-TYETGLKCGLAFGGYSRNANVQHLRSFSQLNILVATMGRL 840
Query: 367 IDHLRNSASFSVDSVEILVIDEADRMLEE-GFQEELQEIMSLIPSKR--QTLLFSATMNX 423
D + N+ S+ ++ +V+DEADRM++ F EE+ +I+ P +R QT+LFSA+ +
Sbjct: 841 QDFV-NAGEVSLSKMKYIVLDEADRMVDSIDFGEEVSKIIG-SPGERTQQTVLFSASFSE 898
Query: 424 XXXXXXXXXXXXP--VRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQLIRKLDNT-- 479
+ +D A +K+ Q+ + + + + K +Y+L+ +NT
Sbjct: 899 DLQSDDLPKFVKEGYTMLQVDKFGTANEKIDQKILPVPRTE--KRDAIYKLLGIDENTVT 956
Query: 480 -------SQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFK 528
+++ ++FV + L ++ G+ +H QEQR +++++F+
Sbjct: 957 LLPDAPIEKQKTLIFVNSVKFCDTLAALISSAGVSTISMHSYQNQEQRDRTLDDFR 1012
>7296530 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 727
Score = 99.8 bits (247), Expect = 1e-20
Identities = 91/337 (27%), Positives = 149/337 (44%), Gaps = 54/337 (16%)
Query: 298 KPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFG-----LAVGGLNLRQQEQAL 352
KPA A + +++ P+RELA Q + I KF L+ L +GG+ L +Q+ L
Sbjct: 281 KPAPNAP-QAIIMEPSRELAEQTYN---QIEKFKYHLSNPEVRSLLLIGGVRLEEQKAQL 336
Query: 353 KTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPS-- 410
IV+ TPGR ++ + NS + V+DEAD +L++G+ E + + IP
Sbjct: 337 MQGTHIVVGTPGR-LEEMINSGLVLLTHCRFFVLDEADALLKQGYTELIDRLHKQIPKIT 395
Query: 411 ----KRQTLLFSATMNXXXXXXXXXX------------------XXXPVRIMIDPPKQAA 448
+ Q ++ SAT++ V ++DP
Sbjct: 396 SDGRRLQMVVCSATLHAFEVKKMAERLMHFPTWVDLKGEDAVPETVHHVVCLVDPQMDTT 455
Query: 449 DKLTQEFIR---IRKRDHLKPA-----LLYQLIRKL---------DNTSQKRIVVFVARK 491
+ ++ I + RD++ P L Q ++ L D + R ++F K
Sbjct: 456 WQSLRQPIGTDGVHDRDNVHPGNHSKETLSQAVKLLKGEYCVHAIDKHNMDRAIIFCRTK 515
Query: 492 ETAHKLRIVLGLLGMQVGE---LHGSLTQEQRLQSVNNFKSLQVPVLICTDLASRGLDIP 548
+ L L G + LHG ++R +++ FK QV LICTD+A+RGLDI
Sbjct: 516 QDCDNLERFLRQRGGKHYSCVCLHGDRKPQERKENLEMFKRQQVKFLICTDVAARGLDIT 575
Query: 549 KIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFV 585
+ +IN +P Y+HR+GR RA R G +++ V
Sbjct: 576 GLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISLV 612
>CE27641 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 752
Score = 92.0 bits (227), Expect = 3e-18
Identities = 88/369 (23%), Positives = 150/369 (39%), Gaps = 69/369 (18%)
Query: 308 VVLTPTRELAIQVADVGKNIGKFVNGLTFG-----LAVGGLNLRQQEQALKTRPDIVIAT 362
V+L PTREL Q +NI F + L G N+ Q + L+T DIV+ T
Sbjct: 309 VILEPTRELVQQTF---QNIQTFASVLDSPKIRCVTLAAGENMNQILRTLETGCDIVVGT 365
Query: 363 PGRFIDHLRNSASFSVDSVEILVIDEADRML--EEGFQEELQEIMSLIP------SKRQT 414
P R D L ++ + +++ +VIDE D+ L + +++ I ++P ++RQ
Sbjct: 366 PSRVFD-LIHTGKLATKNLQFVVIDEIDQFLAGKNNCAHQIESIFRVLPLVAQDGTRRQV 424
Query: 415 LLFSATM-NXXXXXXXXXXXXXPVRIMIDPP-----------------------KQAADK 450
+ SAT+ N P I + +Q +
Sbjct: 425 IACSATLHNFEVCRFADRHMSFPQWIDLKGADCVSADVHHVVCHVDASEDKQWIRQMHQQ 484
Query: 451 LTQEFIRIRKRDHLKPALLYQ--------------LIRKLDNTSQKRIVVFVARKETAHK 496
+ E + D ++P + ++R + + +VF K+
Sbjct: 485 VHLEDDHVHDGDQIRPGTTDKDTISLGTKILKGIYVVRAIHALQMDKAIVFCRTKQQCDH 544
Query: 497 LRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINF 556
+ L + LHG + E+R S+ FK + L+C+D+ +RGLD+ + VI+
Sbjct: 545 MEHFLQQNNLSAACLHGDRSAEERQSSLEGFKKGIIRFLVCSDVVARGLDVQGVPFVISV 604
Query: 557 DMPKTYEIYLHRVGRTARAGREGRSVTFVGESSQDRSIVRSAIRSVEENAESGKALSRNV 616
+P +Y+HR+GR RA R G S++ V E EE A K SR V
Sbjct: 605 TLPDEKSMYVHRIGRVGRAERMGLSISLVSE--------------YEEKAWYHKCRSRGV 650
Query: 617 DWTQVEQVN 625
+ T + ++
Sbjct: 651 NCTNTKDIS 659
>At5g19210 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 430
Score = 91.7 bits (226), Expect = 4e-18
Identities = 79/322 (24%), Positives = 140/322 (42%), Gaps = 37/322 (11%)
Query: 280 GSGKTAAFMIPIIERLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKF----VNGLT 335
GSGKT +++ I L P +S + V++ PTREL +QV V + + V G T
Sbjct: 81 GSGKTLTYLLLIFS--LINPQR-SSVQAVIVVPTRELGMQVTKVARMLAAKSEIDVKGCT 137
Query: 336 FGLAVGGLNLRQQEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEE 395
+ G LR+ + LK P ++ + H+ F +DSV +LV+DE D +
Sbjct: 138 VMALLDGGTLRRHKSWLKAEPPAILVATVASLCHMLEKHIFRIDSVRVLVVDEVDFLFYS 197
Query: 396 GFQEELQEIMSLIPS-----KRQTLLFSATMNXXXX-----XXXXXXXXXPVRIMIDPPK 445
+++ + L+ S KRQT+ SA++ V + +
Sbjct: 198 --SKQVGSVRKLLTSFSSCDKRQTVFASASIPQHKHFVHDCIQQKWTKRDVVHVHVSAIM 255
Query: 446 QAADKLTQEFIRIRKRDHLKPALLYQLIRKLDNTSQKRIVVFVARKETAHK-------LR 498
L F+ K + + L+ L++ + + ++FV + K
Sbjct: 256 PMPLCLLHRFVMCEKTNKHQ-----VLLALLESDAPESAIIFVGEQSEKSKKAGNDPSTT 310
Query: 499 IVLGLL------GMQVGELHGSLTQEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEV 552
+++ L +++ L G + R S+ + +L+ TD+A+RG+D+P+
Sbjct: 311 LLMEFLKTSYKGSLEILLLEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTH 370
Query: 553 VINFDMPKTYEIYLHRVGRTAR 574
+ NFD+P+T YLHR GR R
Sbjct: 371 IFNFDLPQTVTDYLHRAGRAGR 392
>Hs17475661 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 240
Score = 88.6 bits (218), Expect = 3e-17
Identities = 67/249 (26%), Positives = 116/249 (45%), Gaps = 57/249 (22%)
Query: 343 LNLRQQEQALKTR-PDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEEL 401
+N+ + Q L+ P I++ TPGR D L N S +++ V+DEAD ML F++++
Sbjct: 46 INMCAKVQKLQMEAPHIIMGTPGRVSDML-NWRYLSPKYIKMFVLDEADEMLSHRFKDQI 104
Query: 402 QEIMSLIPSKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKR 461
+I ++ S Q +L SAT+ P ++ ++T++F+R
Sbjct: 105 CDIFQMLNSNTQVVLLSATI--------------PSDVL---------EVTKKFMR---- 137
Query: 462 DHLKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRL 521
I + V ++E L L V +HG + Q++R
Sbjct: 138 --------------------DPIRILVKKEE--------LTLKDFTVSAMHGDMDQKERD 169
Query: 522 QSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRS 581
+ ++S VLI TDL RG+D+ ++ +VIN+D P E Y+HR+GR + G +G +
Sbjct: 170 VVMREYRSGSSRVLITTDLLPRGIDVQQLSLVINYDPPTNRENYIHRIGRGGQFGHKGVA 229
Query: 582 VTFVGESSQ 590
+ V E +
Sbjct: 230 INMVAEDKR 238
>YGL064c [A] KOG0335 ATP-dependent RNA helicase
Length = 561
Score = 87.8 bits (216), Expect = 5e-17
Identities = 105/431 (24%), Positives = 175/431 (40%), Gaps = 91/431 (21%)
Query: 256 PSPIQSAAIPIALLGKDII--------AGAVTGSGKTAAFMIPIIERLLYKPAHIAST-- 305
PSPIQ+ AI + K+++ A TGSGKT A++IP+I+ L +
Sbjct: 137 PSPIQTVAIK--RISKNLMDPKLQIHAIAAETGSGKTMAYLIPLIDYLKRQELETPELWE 194
Query: 306 --------RVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKTRPD 357
R ++L PT EL QV + K + GL + R + +K R D
Sbjct: 195 TLRKNVLIRSIILVPTHELVDQVYETVSKT-KTLLGLNSFKWDKATSYRDLLENIKNRID 253
Query: 358 IVIATPGRFID----HLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKRQ 413
I++ TPG+ ++ + + V +V+DEAD +L+ + EE + IP+
Sbjct: 254 ILVTTPGKLLNLFSIRMITRPDKVLSKVGFVVLDEADTLLDRSWLEETHSAIKRIPNINH 313
Query: 414 TLLFSATMNXXXXXXXXXXXXXPVRIMIDP----PKQAADKLTQEFIRIRKRDHLKPALL 469
+ SAT+ V IM P K+ + K +K L
Sbjct: 314 LIFCSATIPQEFNKTMQRLFPTVVPIMTPRLHKLPFALDFKVINSALSPFKGSKIK--AL 371
Query: 470 YQLIRKLDNTS-----QKRIVVFVARKETAHKLRIVLGLLGMQVGE----LHGSLTQEQR 520
Q + + N +KR ++FV K+ + ++ LL + G L G T E+R
Sbjct: 372 AQTLYAISNDDTEPGFEKRCIIFVNEKKNVPE---IVNLLNKKFGHNAIGLTGEDTFEER 428
Query: 521 LQSVNNF---------------------KSLQVP-------------------------V 534
+ + F K ++P V
Sbjct: 429 SEKIMPFLSPPRPLSEVVAQSTSPPTSLKKFEIPDSNIVIGKLKNTNSNGTAPSNKSLHV 488
Query: 535 LICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESSQDRSI 594
L+ TDL +RGL+ + V+ +D+PKT +HRVGRTAR + GR F+ S+ +S
Sbjct: 489 LVTTDLMARGLNFKGVRNVVLYDVPKTSIDLIHRVGRTARMKQGGR--VFMLTDSKTKSW 546
Query: 595 VRSAIRSVEEN 605
++ + ++++
Sbjct: 547 AKALPKIIKKH 557
>CE06825 [A] KOG0335 ATP-dependent RNA helicase
Length = 528
Score = 87.0 bits (214), Expect = 9e-17
Identities = 83/382 (21%), Positives = 165/382 (42%), Gaps = 45/382 (11%)
Query: 244 VLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAHIA 303
++ L + T+ + +Q +I + G+ ++ A TG GKT AF+IP IE L
Sbjct: 104 IVNNLKCVHVTTFNAVQQMSIQVIREGRGLVVEAPTGIGKTYAFLIPAIEAALKNRQSNC 163
Query: 304 ------STRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKTRP- 356
S ++++ T L Q+ N + + GL V + + ++ + P
Sbjct: 164 FEYTKPSPSILIMASTSALVDQLF----NRCELILGLQCMDNVEPIRDIKIDKLVANHPF 219
Query: 357 -----DIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEE-GFQEELQEIMSLIPS 410
DI T G+ + +D+++ +++DEAD+M++ F ++ I+ +
Sbjct: 220 TKGQCDIAFCTIGKLKATIE-CGDVCLDNLKTIILDEADKMIDNCAFGPDINWILDQLKE 278
Query: 411 KR----QTLLFSATMNXXXXXXXXXXXXXPVRIMIDPP------KQAADKLTQEFIRIRK 460
+ Q+ FSAT N + D P + + +TQ +R+ +
Sbjct: 279 ENLENLQSCFFSATYNKNANGTIALTVLQMRMLGEDDPWSVIICPRMSGYITQRVVRVGR 338
Query: 461 ------RDH---LKPALLYQLIR--------KLDNTSQKRIVVFVARKETAHKLRIVLGL 503
R H +K ++ +LI D + I +F + ++ + L
Sbjct: 339 GRPNDIRSHPWVIKMGIIRKLIDDDLKETGCSKDGPYNETIAIFCETVQRVTQVTMALRQ 398
Query: 504 LGMQVGELHGSLTQEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYE 563
LG + +T+ Q+L +VN+ + ++ ++CT++ +RG+D+ ++ I +M ++
Sbjct: 399 LGYNFKPVCSMITKNQQLVTVNDLEFRKIHGVVCTNILARGIDVSSVKHTIIMEMSADFD 458
Query: 564 IYLHRVGRTARAGREGRSVTFV 585
Y HR+GR R G G+S V
Sbjct: 459 TYKHRIGRVGRDGCGGKSTVLV 480
>7290730 [A] KOG0331 ATP-dependent RNA helicase
Length = 438
Score = 86.7 bits (213), Expect = 1e-16
Identities = 78/346 (22%), Positives = 154/346 (43%), Gaps = 14/346 (4%)
Query: 234 TFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 293
+F + +L+ L GY P+PIQ+ IA GK+I+ + G+GKT +++P I
Sbjct: 33 SFERSGFNATILQQLEDQGYDGPTPIQAQTWSIAKEGKNIVMISGKGTGKTLGYLLPGIM 92
Query: 294 RLLYKPA---HIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQ 350
++ + H V++L RE A+ V + + + N L N + Q
Sbjct: 93 KMHNQRGLMQHKKGPIVLILVDCREAAVMVQ---REVLYYTNPLELRTHCLLGNSQWQGH 149
Query: 351 ALKTRPDIVIATPGRFIDHLRNSASF-SVDSVEILVIDEADRMLEEGFQEELQEIMSLIP 409
A D+++A+ GR + + N ++ LV+D DRM++ G + + ++ +
Sbjct: 150 A---ECDLLVASAGRLLQMIDNKKHVVELERCTYLVLDNIDRMIDVGLEGNICRLLCRLR 206
Query: 410 SKRQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHL-KPAL 468
Q ++ S + + I + +L R+ + L K
Sbjct: 207 PHAQLIVSSTSWSSNLKRMANKFLGQYTAIRVGEINNIGVRLQNIRQRVEVVNGLSKVER 266
Query: 469 LYQLIRKLDNTSQ--KRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNN 526
L + + + +TS ++V++V R++ +L ++ G +HG T ++ +++
Sbjct: 267 LMKELTAIYDTSDIPGKVVIYVKRQKVVEELVDLIRNCVPCEG-IHGGRTAQENQGIIHD 325
Query: 527 FKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRT 572
F + +++ T + S LD+P I VIN+D P + Y+ R+ RT
Sbjct: 326 FGTGAYNIIVATQMTSNCLDVPGIRYVINYDFPDNIDKYVQRMSRT 371
>Hs20555745 [A] KOG0326 ATP-dependent RNA helicase
Length = 325
Score = 80.9 bits (198), Expect = 7e-15
Identities = 47/142 (33%), Positives = 78/142 (54%), Gaps = 3/142 (2%)
Query: 234 TFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 293
T +L+ R +L + +G+ PSP Q +IPIAL G+DI+A A G+GK++A IP+++
Sbjct: 50 TIIALNHKRRLLMRIFEMGWKKPSPFQEESIPIALSGRDILARAKNGTGKSSAHDIPLLK 109
Query: 294 RLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALK 353
RL K I + +V+ PT A+QV+ + + K + G+ + GG N L
Sbjct: 110 RLDLKKDTI---QTIVIVPTGGPALQVSQICIQVSKHMGGVKVVMTTGGTNSGDDVLRLD 166
Query: 354 TRPDIVIATPGRFIDHLRNSAS 375
+VIA PGR ++ ++ +
Sbjct: 167 DTVHMVIAAPGRILNLIKKGVA 188
>ECU07g1060 [A] KOG0344 ATP-dependent RNA helicase
Length = 416
Score = 80.5 bits (197), Expect = 9e-15
Identities = 100/390 (25%), Positives = 173/390 (43%), Gaps = 53/390 (13%)
Query: 253 YTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAHIASTRVVVLTP 312
+ SP Q IP L ++I A TGSGKT ++ +P++E A S +L P
Sbjct: 45 FDSPLLTQKVVIPYFLKKTNVIVQAFTGSGKTLSYCLPLVEM-----ARGRSLFGAILVP 99
Query: 313 TRELAIQVADVGKNI--------GKFVNGLTFGLAVGG---------LNLRQQE---QAL 352
+ L QV V + I G + +G L G ++ + +E ++L
Sbjct: 100 GKPLVRQVYRVVREIKHEGLKVVGVYGDGREDFLVEEGEKGELVQKAIDDKMRERIAESL 159
Query: 353 KTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKR 412
+ ++I TP + + S + +V LVIDEAD ++ I+S+I +
Sbjct: 160 RASARVLIGTPRSVLGLMSMS---EIRNVTHLVIDEADLLINPETVGVFASILSVIEMED 216
Query: 413 QTL-LFSATMNXXXXXXXXXXXX-XPVRIMIDPPKQAADKLTQEFI--RIRKRDHLKPAL 468
+ FSATMN +R++ K+ D EF+ RK HL
Sbjct: 217 IHISCFSATMNEYVSEVIETVKSITKIRVV---SKRLID---HEFVFGTSRKIKHLS--- 267
Query: 469 LYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFK 528
L++ + + + ++FV ++T L ++LG + + GS + ++ F+
Sbjct: 268 ---LLQIIADGIESPTLIFVKDEKTGEALSMLLGKSAVYREDQEGSG------EVLDGFR 318
Query: 529 SLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGES 588
++ L TD SRG+D I VIN+D+P T ++HR+GR R +G+ + + S
Sbjct: 319 LKKIWYLFTTDSLSRGIDFYNIRSVINYDLPSTKTQFVHRIGRINR-NCQGQKI-YTIYS 376
Query: 589 SQDRSIVRSAIRSVEENA-ESGKALSRNVD 617
S+D + +EEN E K ++R ++
Sbjct: 377 SEDFGRIGVVAEFLEENGHEVPKHITRIIE 406
>Hs22070384 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 447
Score = 78.6 bits (192), Expect = 3e-14
Identities = 37/81 (45%), Positives = 58/81 (70%)
Query: 340 VGGLNLRQQEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQE 399
+GG N + L +I++AT GR +DH++N+ F +++ LVIDEADR+L+ GF+E
Sbjct: 1 MGGSNRSAEAWKLANGINIIVATSGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEE 60
Query: 400 ELQEIMSLIPSKRQTLLFSAT 420
EL++I+ L+ + RQT+LFSAT
Sbjct: 61 ELKQIIKLLLTHRQTMLFSAT 81
>Hs20548087 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 344
Score = 78.6 bits (192), Expect = 3e-14
Identities = 69/287 (24%), Positives = 130/287 (45%), Gaps = 21/287 (7%)
Query: 234 TFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 293
+F+ ++L +L G+ + G PS IQ AI + G +I A +G+GK A F I I+
Sbjct: 78 SFDDMNLLESLLHGIYAYGSEKPSAIQQRAILPCIRGYVVIVQAQSGTGKMATFSISILH 137
Query: 294 RLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALK 353
++ + +T+ ++ +++ I + D + +GG N+ + Q L+
Sbjct: 138 QI---ELDVKATQALI----QKVVIALGDH--------MDASCHTCIGGTNVHAEVQKLQ 182
Query: 354 TR-PDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKR 412
P I++ TPG D L N S +++ V+D+ D ML GF++++ I + S
Sbjct: 183 MEAPHIIVGTPGHVFDML-NWRYLSPKYIKMFVLDKTDEMLSHGFKDQIYGIFQELNSNT 241
Query: 413 QTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQL 472
Q +L SATM + I++ + + + Q +I + +R+ K L L
Sbjct: 242 QVVLPSATMPSDVLEVTKKFMREHIWILVKKEELTLEGICQFYINM-EREEWKLDTLGDL 300
Query: 473 IRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQ 519
L + + V+F+ + A L + V +HG + Q++
Sbjct: 301 YETL---TIAQAVIFLNTRRKADWLTKKMHAQDFTVSAMHGDMDQKE 344
>CE28975 [A] KOG0335 ATP-dependent RNA helicase
Length = 520
Score = 75.1 bits (183), Expect = 4e-13
Identities = 77/366 (21%), Positives = 161/366 (43%), Gaps = 40/366 (10%)
Query: 259 IQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIE------RLLYKPAHIASTRVVVLTP 312
+Q +I + ++ A TG GKT AF+IP IE LL + S +++L
Sbjct: 118 VQQKSIQAIRDRRGLLVDAPTGIGKTYAFLIPAIEIALRERPLLTNISTTPSPTILILAN 177
Query: 313 TRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQ---QEQALKTRPDIVIATPGRFIDH 369
T L Q+ + + + ++ + + + + + + Q K + DI T G+
Sbjct: 178 TNSLVEQLFNRCEVLLGLID-MEDIIPIRDIKIEKLVASYQFTKDQCDIAFCTMGKLKAS 236
Query: 370 LRNSASFSVDSVEILVIDEADRMLE-----EGFQEELQEIMSLIPSKRQTLLFSATMNXX 424
+ + + +D+++++++DE+D+M++ L ++ + Q+ FSA+ N
Sbjct: 237 IEDK-TILLDNLKMMILDESDKMIDIACFGNDIDWVLDQLQEDVLRNLQSCFFSASHNRN 295
Query: 425 XXXXXXXXXXXPVRIMIDPP------KQAADKLTQEFIRI---RKRD-HLKP-------- 466
R++ + P + +TQ IRI R D H P
Sbjct: 296 EDGSIALTSRQS-RMLGENPWSLIHCPRLPGYITQRVIRIGGQRVNDIHSNPWIVKMNII 354
Query: 467 -ALLYQLIRKLDNTSQ----KRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRL 521
LL ++++ +T + I +F ++ + L +G + S+ ++Q+
Sbjct: 355 CKLLDDDLKEMGSTKEGPWKHTIAIFCETVSRVIQVTMALRQMGYNFKPVCSSVLKQQQA 414
Query: 522 QSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRS 581
++N+ + + ++CT++ SRG+D+ ++ I +M + Y+HR+GR R G GR+
Sbjct: 415 ITLNDLEFCNIHGVVCTNIMSRGIDVSSVKQTIIMEMSTDFPSYMHRIGRVGRDGCGGRA 474
Query: 582 VTFVGE 587
+ E
Sbjct: 475 TVLIDE 480
>CE15167 [A] KOG0335 ATP-dependent RNA helicase
Length = 340
Score = 74.3 bits (181), Expect = 6e-13
Identities = 71/335 (21%), Positives = 143/335 (42%), Gaps = 52/335 (15%)
Query: 259 IQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYK------PAHIASTRVVVLTP 312
+Q +I + G+ ++ A TG GKT AF+IP IE L + S ++++
Sbjct: 19 VQQMSIQVIREGRGLVVEAPTGIGKTYAFLIPAIEAALENRQSNCFESTKPSPSILIMAS 78
Query: 313 TRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKTRP------DIVIATPGRF 366
T L Q+ N + + GL V + + ++ + P DI T G+
Sbjct: 79 TSALVDQLF----NRCELILGLQCMDNVEPIRDIKIDKLVANHPFTKGQCDIAFCTIGKL 134
Query: 367 IDHLRNSASFSVDSVEILVIDEADRMLEE-GFQEELQEIMSLIPSKR----QTLLFSATM 421
+ +D+++ +++DEAD+M++ F ++ I+ + + Q+ FSAT
Sbjct: 135 KATIE-CGDVCLDNLKTIILDEADKMIDNCAFVPDINWILDQLKEENLENLQSCFFSATY 193
Query: 422 NXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQLIRKLDNTSQ 481
N K A + +++R P D
Sbjct: 194 N----------------------KNANGTIALTVLQMRMLGEDDPCK--------DGPYN 223
Query: 482 KRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQVPVLICTDLA 541
+ I +F + ++ + L LG + +T+ Q+L +VN+ + ++ ++CT++
Sbjct: 224 ETIAIFCETVQRVTQVTMTLRQLGYNFKPVCSMITKNQQLVTVNDLEFRKIHGVVCTNIL 283
Query: 542 SRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAG 576
+RG+D+ ++ I +M ++ Y HR+GR + +G
Sbjct: 284 ARGIDVSSVKHTIIMEMSADFDTYKHRIGRVSISG 318
>At1g59990 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 581
Score = 70.5 bits (171), Expect = 9e-12
Identities = 45/150 (30%), Positives = 78/150 (52%), Gaps = 4/150 (2%)
Query: 469 LYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFK 528
L + ++ +NT+ +R +VF E + +L +Q H + ++R + +F+
Sbjct: 412 LIEAVKNNNNTNTERTMVFANTVEAVEAVADILEKASIQCYRYHKNHKLDERANILADFR 471
Query: 529 SLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGES 588
V +CTD A+RG+D+P + VI D + +LHR+GRTARAG+ G + E+
Sbjct: 472 ETG-GVFVCTDAAARGVDVPNVSHVIQADFASSAVDFLHRIGRTARAGQYGTVTSLYTEA 530
Query: 589 SQDR-SIVRSAIRSVE--ENAESGKALSRN 615
++D +R A++ + E A S K RN
Sbjct: 531 NRDLVEAIREAVKMGQPVETAFSRKRGFRN 560
Score = 67.0 bits (162), Expect = 1e-10
Identities = 57/195 (29%), Positives = 91/195 (46%), Gaps = 30/195 (15%)
Query: 234 TFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 293
++ SL LS V L G+ PS Q+ IP L GKD+I A TGSGKT ++ PII+
Sbjct: 81 SWKSLGLSDNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIID 140
Query: 294 RLLYKPAHIASTR-----------VVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGG 342
+L T ++L P L QV + VNGL + G
Sbjct: 141 QLTNTALDSEVTNREERPFPLKNISLILCPNVMLCEQVV-------RMVNGL---VDEDG 190
Query: 343 LNLRQQEQALKTR------PDIVIATPGRFIDHL---RNSASFSVDSVEILVIDEADRML 393
L + E ++ PDI+++TP ++++ RN + V+ +V DEAD +L
Sbjct: 191 NPLLRVEAVCGSQGWPDRLPDIIVSTPAALLNNIEPKRNRRLEFLRCVKYVVFDEADMLL 250
Query: 394 EEGFQEELQEIMSLI 408
FQ ++ +++++
Sbjct: 251 CGSFQNQIIRLINML 265
>Hs22045464 [A] KOG0343 RNA Helicase
Length = 597
Score = 70.1 bits (170), Expect = 1e-11
Identities = 39/112 (34%), Positives = 67/112 (59%), Gaps = 6/112 (5%)
Query: 309 VLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKTRPDIVIATPGRFID 368
++T ++ I +A GKN + + GL +GG L+ + + + +I++ PGR +
Sbjct: 91 LVTEIQKQTIGLALQGKN-----HDFSAGLIIGGKYLKHEAERINNI-NILVCAPGRLLQ 144
Query: 369 HLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKRQTLLFSAT 420
H+ + SF ++ +LV+DEA R+L+ GF + + I+ +P KRQTLLFSAT
Sbjct: 145 HMDETVSFHATALLMLVLDEAYRILDVGFADTMNAIIENLPKKRQTLLFSAT 196
Score = 57.4 bits (137), Expect = 8e-08
Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 517 QEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAG 576
Q +R++ N F + VL +D+A+RGLD P + + FD P+ Y+HR GRTAR
Sbjct: 218 QMRRMEVYNEFVRKRAAVLFASDVAARGLDFPAVNWALQFDCPEDANTYIHRAGRTARYK 277
Query: 577 REGRSVTFVGESSQDRSIVRSAIR 600
+G ++ + + +++IV+ ++
Sbjct: 278 EDGEALLIL--LASEKAIVQQLLQ 299
>Hs22057430 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 166
Score = 68.2 bits (165), Expect = 4e-11
Identities = 40/122 (32%), Positives = 72/122 (58%), Gaps = 4/122 (3%)
Query: 234 TFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 293
+F+ ++LS +L+G+ + G PS IQ AI + G +IA A +G+GK A F I I++
Sbjct: 17 SFDDMNLSESLLRGIYAYGLEKPSAIQQRAILPCIKGYHVIAQAQSGAGKMATFAILILQ 76
Query: 294 RLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALK 353
++ + +T+ ++L PT+ELA Q+ V +G ++ G + + G N+R + Q L+
Sbjct: 77 QI---ELDLKATQALLLAPTQELAQQIQKVVMALGDYM-GASCHACIRGTNMRAEVQKLQ 132
Query: 354 TR 355
T+
Sbjct: 133 TK 134
>Hs17436931 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 197
Score = 67.8 bits (164), Expect = 6e-11
Identities = 30/57 (52%), Positives = 46/57 (80%)
Query: 364 GRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKRQTLLFSAT 420
GR +DH++N+ F +++ LVIDEADR+L+ GF+EEL++I+ L+ + RQT+LFSAT
Sbjct: 32 GRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLLTHRQTMLFSAT 88
>Hs4826686 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 740
Score = 67.4 bits (163), Expect = 8e-11
Identities = 32/80 (40%), Positives = 47/80 (58%)
Query: 511 LHGSLTQEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVG 570
LHG +R Q++ FK V LICTD+A+RG+DI + VIN +P + Y+HR+G
Sbjct: 545 LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG 604
Query: 571 RTARAGREGRSVTFVGESSQ 590
R RA R G +++ V +
Sbjct: 605 RVGRAERMGLAISLVATEKE 624
Score = 63.9 bits (154), Expect = 8e-10
Identities = 39/125 (31%), Positives = 70/125 (55%), Gaps = 9/125 (7%)
Query: 306 RVVVLTPTRELAIQVADVGKNIGKFVNG--LTFGLAVGGLNLRQQEQALKTRPDIVIATP 363
+ +++ P+RELA Q + K K+++ L L +GG+ R Q L+ DIV+ TP
Sbjct: 288 KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP 347
Query: 364 GRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIP------SKRQTLLF 417
GR +D L ++ ++ V LV+DEAD +L +G+ + + + + IP + Q ++
Sbjct: 348 GR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC 406
Query: 418 SATMN 422
SAT++
Sbjct: 407 SATLH 411
>Hs18595975 [A] KOG0335 ATP-dependent RNA helicase
Length = 468
Score = 65.5 bits (158), Expect = 3e-10
Identities = 63/248 (25%), Positives = 104/248 (41%), Gaps = 9/248 (3%)
Query: 341 GGLNLRQQEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEE 400
G ++ QQ Q L+ +++ATPG +D L +D + LV+DEADRML+ GF +
Sbjct: 224 GDADIGQQIQVLEHGCHLLVATPGGLVD-LMERGKIGLDFCKYLVLDEADRMLDMGFGPQ 282
Query: 401 LQEIM--SLIPSK--RQTLLFSATMNXXXXXXXXXXXXXPVRIMIDPPKQAADKLTQEFI 456
+ I+ +P K ++FSAT + + + ++ +TQE +
Sbjct: 283 IHLILEQDTMPLKGIHHIMMFSATFPNEIQMLARDFLDEYIFLAVGRVGSTSETITQEVV 342
Query: 457 RIRKRDHLKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLT 516
+ + D K + L L+ S +VFV K+ L L +HG +
Sbjct: 343 WVEEPD--KRSFLLDLLNAPGKDS--LTLVFVETKKGEDSLENFLYHEVYPCTSIHGDQS 398
Query: 517 QEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAG 576
Q R ++ + P S K E NFD+P E Y+ +G T G
Sbjct: 399 QRDREGGPSSVLLGENPNSSGYSCGSMKTRHFKCETCFNFDLPSDIEEYVPCIGCTGCVG 458
Query: 577 REGRSVTF 584
+G + +F
Sbjct: 459 IQGLATSF 466
>CE27320 [A] KOG0335 ATP-dependent RNA helicase
Length = 463
Score = 63.5 bits (153), Expect = 1e-09
Identities = 36/99 (36%), Positives = 58/99 (58%), Gaps = 13/99 (13%)
Query: 235 FNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 294
F+ LSL + + + + GY P+P+Q +IP G+D+++ A TGSGKTAAF++P++
Sbjct: 365 FSDLSLHEWIEENIKTAGYDRPTPVQKYSIPALQGGRDLMSCAQTGSGKTAAFLVPLVNA 424
Query: 295 LLY---KPAHIAST----------RVVVLTPTRELAIQV 320
+L H + T +VL+PTREL++QV
Sbjct: 425 ILQDGPDAVHRSVTSSGGRKKQYPSALVLSPTRELSLQV 463
>Hs22044561 [A] KOG0331 ATP-dependent RNA helicase
Length = 964
Score = 59.7 bits (143), Expect = 2e-08
Identities = 34/152 (22%), Positives = 77/152 (50%), Gaps = 3/152 (1%)
Query: 440 MIDPPKQAADKLTQEFIRIRKRDHLKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRI 499
+++ ++ A+++ ++F ++ ++PA++ +++ + + I+ RK
Sbjct: 526 LLNKARELANQVAKDFKDKTRKLSMRPAVIGDVLQVYSGSEGRAIIFCETRKNVTEMA-- 583
Query: 500 VLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMP 559
+ + LHG + Q QR ++ F+ VL+ T++A+ L IP++++VI P
Sbjct: 584 MNPHIKQNAQCLHGDIAQSQREITLKGFREDSFKVLVATNVAAHSLHIPEVDLVIQHSPP 643
Query: 560 KTYEIYLHRVGRTARAGREGRSVTFVGESSQD 591
+ E +HR G T RAG +G F+ + ++
Sbjct: 644 QDVEARIHRSGCTGRAG-QGFVYVFINQEKEE 674
>At2g28600 [A] KOG0339 ATP-dependent RNA helicase
Length = 502
Score = 58.5 bits (140), Expect = 4e-08
Identities = 70/314 (22%), Positives = 132/314 (41%), Gaps = 18/314 (5%)
Query: 307 VVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKT-RPDIVIATPGR 365
++ L P++ A QV V K + K + T L G L Q LK+ P+ ++ATP R
Sbjct: 199 LLYLVPSQSKASQVRSVCKAL-KGIGIHTVSLHQGA-PLDHQISGLKSVEPEFIVATPER 256
Query: 366 FIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKRQTLLFSATMNXXX 425
++ + + +V +LVIDE + G+ ++ I I SK QT++F+ + +
Sbjct: 257 LLE-IVTLKGVDISNVSLLVIDELGSLCSGGYLNAVKSIKQAISSKHQTIVFNNSFSASI 315
Query: 426 XXXXXXXXXXPV-RIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQLIRKLDNTSQKRI 484
V R+ ++ + + + + + K L + + LD++S K +
Sbjct: 316 IPAVQSFLGGSVNRVTVNESVASQGSCITQTVSVCASEEKK---LQKFAKHLDSSSSK-L 371
Query: 485 VVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQVPVLICTDLASRG 544
+ V ++E+ K+ +L L G+ V S + + +L V K + PV D
Sbjct: 372 IYIVTKEESFKKIMAILKLKGISV-----STSSDSKLSEV---KKSRKPVAHLIDFEQLD 423
Query: 545 LDIPK-IEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESSQDRSIVRSAIRSVE 603
+ + E V+ D + EIY + AR G +++ E + +E
Sbjct: 424 TTVMRDSETVLLPDFFPSIEIYTQILTSMARESAHGVLHSYITEKDAASYQAGPLVNVLE 483
Query: 604 ENAESGKALSRNVD 617
++ RN+D
Sbjct: 484 NCGQNVPDRWRNMD 497
>SPAC9.05 [R] KOG0354 DEAD-box like helicase
Length = 839
Score = 57.4 bits (137), Expect = 8e-08
Identities = 44/173 (25%), Positives = 85/173 (48%), Gaps = 15/173 (8%)
Query: 453 QEFIRIRKRDHLKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLG---------- 502
Q F+ K +HL+ ++ + K + T RI++FV + +A ++ LG
Sbjct: 406 QSFVGHPKLEHLE-RIVTEYFEK-EQTKDTRIMIFVEIRSSAEEILRFLGKFYPNVRPAI 463
Query: 503 LLGMQVGELHGSLTQEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTY 562
+G ++Q+ + ++V F+ +V LI T + GLDI +++++I +D +
Sbjct: 464 FIGQSAVRKAAGMSQKLQNETVKQFQKGEVNTLIATSIGEEGLDIGEVDMIICYDASASP 523
Query: 563 EIYLHRVGRTARAGREGRSVTFVGESSQDRSIVRS--AIRSVEENAESGKALS 613
L R+GRT R R+G + ++ R+ A R++++N SG+ LS
Sbjct: 524 IRMLQRMGRTGRK-RKGYIYMLLTRGKEEAKWERAKDAYRTLQDNIVSGRGLS 575
>CE13130_2 [L] KOG0351 ATP-dependent DNA helicase
Length = 873
Score = 53.9 bits (128), Expect = 9e-07
Identities = 80/334 (23%), Positives = 127/334 (37%), Gaps = 38/334 (11%)
Query: 260 QSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAHIASTRVVVLTPTRELAIQ 319
Q I L+G D TG+GK+ + +P + I VV++P R L
Sbjct: 137 QKQCILSTLMGHDTFVLMPTGAGKSLCYQLPAV---------ILPGVTVVVSPLRSLIED 187
Query: 320 VADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKTRPDIVI--ATPGRFIDHLR-NSASF 376
K +G LT L E P I + TP + R NS F
Sbjct: 188 QKMKMKELGIGCEALTADLGAPAQEKIYAELG-SGNPSIKLLYVTPEKISASGRLNSVFF 246
Query: 377 SVDSVEIL---VIDEADRMLEEG--FQEELQEIMSLIPSKRQTLLFSATMNXXXXXXXXX 431
+ +L VIDEA + + G F+ + ++ SL N
Sbjct: 247 DLHRRGLLARFVIDEAHCVSQWGHDFRPDYTKLSSLREKYA---------NPPVPIIALT 297
Query: 432 XXXXPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALLYQLIRKLDNTSQKR-------- 483
P +I+ D + ++ FI RD+LK L+ + R L N +K
Sbjct: 298 ATATP-KIVTDARDHLKMQNSKLFISSFVRDNLKYDLIPKAARSLINVVEKMKQLYPGKS 356
Query: 484 -IVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQVPVLICTDLAS 542
IV ++RKE ++++L G+ H L R+ ++ + + V+ T
Sbjct: 357 GIVYCLSRKE-CETVQMMLTKAGLSAEVYHAGLNDNLRVSVQRSWIANKFDVICATIAFG 415
Query: 543 RGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAG 576
G+D P + VI++ +PK+ E Y GR R G
Sbjct: 416 MGIDKPDVRFVIHYSLPKSIEGYYQETGRAGRDG 449
>At4g35740_2 [L] KOG0351 ATP-dependent DNA helicase
Length = 625
Score = 52.8 bits (125), Expect = 2e-06
Identities = 39/169 (23%), Positives = 75/169 (44%), Gaps = 8/169 (4%)
Query: 455 FIRIRKRDHLKPAL--LYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELH 512
F +R +D L A L L++ N +++ + T L + L +G+ H
Sbjct: 147 FYEVRYKDLLDNAYTDLGNLLKSCGNICA---IIYCLERTTCDDLSVHLSSIGISSAAYH 203
Query: 513 GSLTQEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRT 572
L + R ++++ S + +++ T G+D + +V +F++PK+ E + GR
Sbjct: 204 AGLNSKMRSTVLDDWLSSKKQIIVATVAFGMGIDKKDVRMVCHFNIPKSMESFYQESGRA 263
Query: 573 ARAGREGRSVTFVGESSQDRSIVRSAIRSVEENAESGKALSRNVDWTQV 621
R RSV + G DR + +R+ EN +S + D+ Q+
Sbjct: 264 GRDQLPSRSVLYYG--VDDRKKMEYLLRN-SENKKSSSSKKPTSDFEQI 309
>7300752 [R] KOG0354 DEAD-box like helicase
Length = 1383
Score = 51.6 bits (122), Expect = 4e-06
Identities = 43/145 (29%), Positives = 72/145 (49%), Gaps = 18/145 (12%)
Query: 463 HLKPALLYQ-LIRKLDNTSQKRIVVFVARKETA---HKL----------RIVLGLLGMQV 508
H K L Q L++ R +VF +E+ H+L R +G G V
Sbjct: 413 HAKYEKLRQVLVQHFQANPDSRAIVFCEYRESVMLIHRLLLQHRPVLRPRCFVGQ-GSTV 471
Query: 509 GELHGSLTQEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEI-YLH 567
G + +LTQ+Q+LQ + +F+S VL+ T + GLD+ ++E+++ FD+ T ++
Sbjct: 472 GASY-ALTQKQQLQIMTDFRSGTSNVLVATSIGEEGLDVGEVEMIVCFDICSTNPTRFIQ 530
Query: 568 RVGRTARAGREGRSVTFVGESSQDR 592
R+GRT R + G V V E + +
Sbjct: 531 RIGRTGRK-KNGEVVMLVTEGREQQ 554
>SPAC20H4.04 [R] KOG0354 DEAD-box like helicase
Length = 783
Score = 50.8 bits (120), Expect = 7e-06
Identities = 38/170 (22%), Positives = 79/170 (46%), Gaps = 13/170 (7%)
Query: 460 KRDHLKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLL------GMQVGELHG 513
K +HL L + +R+++F + TA + L + + +G+ +
Sbjct: 450 KMNHLLELLKEHFKDTSEGYQNQRVMIFTEFRNTAEYITTTLLAIRPMVRASLFIGQANS 509
Query: 514 S----LTQEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRV 569
+ + Q Q+ ++++ F++ + L+ T + GLDI +++I +D + + R+
Sbjct: 510 AYSTGMNQMQQKETIDQFRAGVINTLVATSIGEEGLDIGDTDMIICYDASSSPIRTIQRM 569
Query: 570 GRTARAGREGRSVTFVGESSQDRSIVRSAI--RSVEENAESGKALSRNVD 617
GRT R + G+ + E +D RS + R V++ ESGK ++ D
Sbjct: 570 GRTGRK-KSGKVFVLLTEDCEDSKWERSQVSYRRVQKVIESGKKIALKKD 618
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.134 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,751,798
Number of Sequences: 60738
Number of extensions: 1189132
Number of successful extensions: 4531
Number of sequences better than 1.0e-05: 247
Number of HSP's better than 0.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 3386
Number of HSP's gapped (non-prelim): 321
length of query: 748
length of database: 30,389,216
effective HSP length: 114
effective length of query: 634
effective length of database: 23,465,084
effective search space: 14876863256
effective search space used: 14876863256
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)