ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactVI4174.1   suspect: LH  R     KOG0149   General function prediction only                               Predicted RNA-binding protein SEB4 (RRM superfamily)

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactVI4174.1 1455819 1455691 -43  
         (43 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53680 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM su...    27   7.1  

>At5g53680 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM superfamily)
          Length = 169

 Score = 26.6 bits (57), Expect = 7.1
 Identities = 16/36 (44%), Positives = 18/36 (49%), Gaps = 3/36 (8%)

Query: 4   TISGLVFNACSCCLKFKPPTAKPNVSPLTNLPIFLP 39
           TI G + N   C L F     KPN S  +NLP  LP
Sbjct: 77  TIEGRITN---CKLAFVGAKVKPNQSQPSNLPQLLP 109


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.323    0.135    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,840,887
Number of Sequences: 60738
Number of extensions: 72361
Number of successful extensions: 256
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 256
Number of HSP's gapped (non-prelim): 1
length of query: 43
length of database: 30,389,216
effective HSP length: 19
effective length of query: 24
effective length of database: 29,235,194
effective search space: 701644656
effective search space used: 701644656
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)