ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI4237 check: MH A KOG0332 RNA processing and modification ATP-dependent RNA helicase
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI4237 1477113 1478519 469
(469 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YOR046c [A] KOG0332 ATP-dependent RNA helicase 616 e-176
SPBC12C2.06 [A] KOG0332 ATP-dependent RNA helicase 456 e-128
Hs8922886 [A] KOG0332 ATP-dependent RNA helicase 354 1e-97
Hs6005743 [A] KOG0332 ATP-dependent RNA helicase 350 2e-96
Hs21327697 [A] KOG0332 ATP-dependent RNA helicase 301 2e-81
HsM7019399 [A] KOG0332 ATP-dependent RNA helicase 299 7e-81
CE18221 [A] KOG0332 ATP-dependent RNA helicase 267 2e-71
CE18220 [A] KOG0332 ATP-dependent RNA helicase 267 2e-71
CE18219 [A] KOG0332 ATP-dependent RNA helicase 267 2e-71
At3g53110 [A] KOG0332 ATP-dependent RNA helicase 253 4e-67
CE09901 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 238 1e-62
7299019 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 235 1e-61
Hs7661920 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 231 2e-60
7297048 [J] KOG0327 Translation initiation factor 4F helicase su... 229 7e-60
At1g72730 [J] KOG0327 Translation initiation factor 4F helicase ... 225 1e-58
Hs4503531 [J] KOG0327 Translation initiation factor 4F helicase ... 224 2e-58
YKR059w [J] KOG0327 Translation initiation factor 4F helicase su... 224 3e-58
YJL138c [J] KOG0327 Translation initiation factor 4F helicase su... 224 3e-58
YDR021w [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 224 3e-58
Hs4503529 [J] KOG0327 Translation initiation factor 4F helicase ... 224 3e-58
SPAC1006.07 [J] KOG0327 Translation initiation factor 4F helicas... 223 6e-58
At3g19760 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 220 3e-57
At3g13920 [J] KOG0327 Translation initiation factor 4F helicase ... 219 5e-57
CE01341 [J] KOG0327 Translation initiation factor 4F helicase su... 219 9e-57
CE25531 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 218 2e-56
SPAC1F5.10 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1... 217 3e-56
ECU02g1520 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1... 216 6e-56
At1g51380 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 216 6e-56
At1g54270 [J] KOG0327 Translation initiation factor 4F helicase ... 216 8e-56
YDL160c [A] KOG0326 ATP-dependent RNA helicase 185 1e-46
7297629 [A] KOG0326 ATP-dependent RNA helicase 168 2e-41
At2g45810 [A] KOG0326 ATP-dependent RNA helicase 167 3e-41
At3g61240 [A] KOG0326 ATP-dependent RNA helicase 165 1e-40
CE00839 [A] KOG0326 ATP-dependent RNA helicase 165 2e-40
SPBC776.09 [A] KOG0326 ATP-dependent RNA helicase 164 3e-40
Hs4758140 [A] KOG0326 ATP-dependent RNA helicase 163 6e-40
ECU09g1200 [J] KOG0327 Translation initiation factor 4F helicase... 162 1e-39
7296990 [A] KOG0329 ATP-dependent RNA helicase 162 1e-39
At4g00660 [A] KOG0326 ATP-dependent RNA helicase 156 5e-38
YDL084w [A] KOG0329 ATP-dependent RNA helicase 155 2e-37
Hs4758112 [A] KOG0329 ATP-dependent RNA helicase 154 4e-37
SPAC17G6.14c [A] KOG0329 ATP-dependent RNA helicase 151 2e-36
At5g11200 [A] KOG0329 ATP-dependent RNA helicase 150 4e-36
At5g11170 [A] KOG0329 ATP-dependent RNA helicase 150 4e-36
Hs21040371 [A] KOG0329 ATP-dependent RNA helicase 149 7e-36
ECU09g1640 [A] KOG0326 ATP-dependent RNA helicase 149 9e-36
CE03025 [A] KOG0329 ATP-dependent RNA helicase 149 1e-35
At3g09720 [A] KOG0344 ATP-dependent RNA helicase 147 4e-35
YHR065c [A] KOG0330 ATP-dependent RNA helicase 145 1e-34
CE28031 [A] KOG0334 RNA helicase 145 1e-34
CE27427 [A] KOG0334 RNA helicase 145 1e-34
Hs7662318 [A] KOG0334 RNA helicase 143 6e-34
At1g77050 [A] KOG0337 ATP-dependent RNA helicase 143 6e-34
SPCC10H11.01 [A] KOG0334 RNA helicase 142 8e-34
CE01338 [J] KOG0327 Translation initiation factor 4F helicase su... 142 1e-33
7294824 [K] KOG4284 DEAD box protein 142 1e-33
ECU02g0670 [A] KOG0335 ATP-dependent RNA helicase 140 3e-33
SPAC823.08c [A] KOG0330 ATP-dependent RNA helicase 140 5e-33
7295314 [A] KOG0331 ATP-dependent RNA helicase 139 7e-33
At3g22310 [A] KOG0331 ATP-dependent RNA helicase 139 9e-33
7298989 [A] KOG0336 ATP-dependent RNA helicase 139 9e-33
YOR204w [A] KOG0335 ATP-dependent RNA helicase 139 1e-32
SPAC31A2.07c [A] KOG0337 ATP-dependent RNA helicase 138 2e-32
Hs11321632 [A] KOG0339 ATP-dependent RNA helicase 138 2e-32
At2g33730 [A] KOG0333 U5 snRNP-like RNA helicase subunit 137 5e-32
7293060 [A] KOG0334 RNA helicase 137 5e-32
7290853 [A] KOG0331 ATP-dependent RNA helicase 136 6e-32
Hs5453840_1 [A] KOG0331 ATP-dependent RNA helicase 136 6e-32
At3g58570 [A] KOG0335 ATP-dependent RNA helicase 135 1e-31
CE28369 [A] KOG0335 ATP-dependent RNA helicase 135 2e-31
CE24451 [A] KOG0335 ATP-dependent RNA helicase 135 2e-31
At2g42520 [A] KOG0335 ATP-dependent RNA helicase 135 2e-31
7298204 [A] KOG0335 ATP-dependent RNA helicase 135 2e-31
SPBC543.06c [A] KOG0340 ATP-dependent RNA helicase 134 2e-31
At3g22330 [A] KOG0331 ATP-dependent RNA helicase 134 2e-31
7299061 [A] KOG0335 ATP-dependent RNA helicase 134 2e-31
At3g01540 [A] KOG0331 ATP-dependent RNA helicase 133 5e-31
YPL119c [A] KOG0335 ATP-dependent RNA helicase 133 7e-31
SPCC1795.11 [A] KOG0335 ATP-dependent RNA helicase 133 7e-31
At1g55150 [A] KOG0331 ATP-dependent RNA helicase 133 7e-31
7296646 [A] KOG0331 ATP-dependent RNA helicase 132 8e-31
Hs20149629 [A] KOG0330 ATP-dependent RNA helicase 132 1e-30
Hs15316941 [A] KOG0344 ATP-dependent RNA helicase 131 2e-30
Hs14251212 [K] KOG4284 DEAD box protein 131 2e-30
YLL008w [A] KOG0338 ATP-dependent RNA helicase 131 2e-30
YGL078c [A] KOG0331 ATP-dependent RNA helicase 131 2e-30
Hs13514809 [A] KOG0335 ATP-dependent RNA helicase 131 2e-30
Hs4758138 [A] KOG0331 ATP-dependent RNA helicase 130 3e-30
Hs13514813 [A] KOG0335 ATP-dependent RNA helicase 130 3e-30
At5g63120 [A] KOG0331 ATP-dependent RNA helicase 130 3e-30
At1g20920 [A] KOG0334 RNA helicase 130 3e-30
7294797 [A] KOG0339 ATP-dependent RNA helicase 130 4e-30
Hs9506931 [A] KOG0346 RNA helicase 129 7e-30
ECU08g1080 [A] KOG0331 ATP-dependent RNA helicase 129 9e-30
CE28485 [K] KOG4284 DEAD box protein 129 9e-30
SPAC30D11.03 [A] KOG0338 ATP-dependent RNA helicase 129 1e-29
Hs20548087 [J] KOG0327 Translation initiation factor 4F helicase... 129 1e-29
At5g14610 [A] KOG0331 ATP-dependent RNA helicase 129 1e-29
7291960_2 [A] KOG0337 ATP-dependent RNA helicase 129 1e-29
At3g06480 [A] KOG0331 ATP-dependent RNA helicase 128 2e-29
At2g47330 [A] KOG0339 ATP-dependent RNA helicase 128 2e-29
7304081 [A] KOG0338 ATP-dependent RNA helicase 128 2e-29
SPBP8B7.16c [A] KOG0331 ATP-dependent RNA helicase 128 2e-29
SPBC17D1.06 [A] KOG0331 ATP-dependent RNA helicase 128 2e-29
CE00337 [A] KOG0330 ATP-dependent RNA helicase 128 2e-29
CE22474 [A] KOG0336 ATP-dependent RNA helicase 127 3e-29
YNL112w [A] KOG0331 ATP-dependent RNA helicase 127 4e-29
Hs13775232 [A] KOG0331 ATP-dependent RNA helicase 127 4e-29
At1g31970 [A] KOG0331 ATP-dependent RNA helicase 127 4e-29
Hs22057246 [A] KOG0336 ATP-dependent RNA helicase 127 5e-29
7298752 [A] KOG0330 ATP-dependent RNA helicase 126 8e-29
CE18785 [A] KOG0331 ATP-dependent RNA helicase 125 1e-28
CE25121 [A] KOG0335 ATP-dependent RNA helicase 125 2e-28
Hs19743937 [A] KOG0338 ATP-dependent RNA helicase 124 2e-28
YDR243c [A] KOG0333 U5 snRNP-like RNA helicase subunit 124 3e-28
Hs13787209 [A] KOG0331 ATP-dependent RNA helicase 124 4e-28
CE09012 [A] KOG0335 ATP-dependent RNA helicase 124 4e-28
YGL171w [A] KOG0344 ATP-dependent RNA helicase 123 5e-28
Hs10346129 [A] KOG0336 ATP-dependent RNA helicase 123 7e-28
At3g58510 [A] KOG0335 ATP-dependent RNA helicase 123 7e-28
At5g60990 [A] KOG0330 ATP-dependent RNA helicase 122 9e-28
YBR237w [A] KOG0334 RNA helicase 122 1e-27
Hs19923595 [A] KOG0337 ATP-dependent RNA helicase 122 1e-27
CE27553 [A] KOG0337 ATP-dependent RNA helicase 121 2e-27
At1g16280 [A] KOG0340 ATP-dependent RNA helicase 121 3e-27
7296891 [A] KOG0341 DEAD-box protein abstrakt 121 3e-27
SPCC63.11 [A] KOG0333 U5 snRNP-like RNA helicase subunit 120 3e-27
Hs4759278 [A] KOG0333 U5 snRNP-like RNA helicase subunit 119 7e-27
Hs17474597 [A] KOG0333 U5 snRNP-like RNA helicase subunit 119 7e-27
YJL033w [A] KOG0343 RNA Helicase 119 1e-26
YHR169w [A] KOG0340 ATP-dependent RNA helicase 119 1e-26
At5g51280 [A] KOG0341 DEAD-box protein abstrakt 119 1e-26
CE26887 [A] KOG0333 U5 snRNP-like RNA helicase subunit 119 1e-26
CE24878 [A] KOG0333 U5 snRNP-like RNA helicase subunit 119 1e-26
Hs9507237 [A] KOG0335 ATP-dependent RNA helicase 118 2e-26
At3g18600 [A] KOG0342 ATP-dependent RNA helicase pitchoune 118 2e-26
7303950 [A] KOG0340 ATP-dependent RNA helicase 118 2e-26
ECU10g0440 [A] KOG0330 ATP-dependent RNA helicase 117 3e-26
7293941 [A] KOG0344 ATP-dependent RNA helicase 117 3e-26
YDL031w [A] KOG0337 ATP-dependent RNA helicase 117 4e-26
CE17559 [A] KOG0339 ATP-dependent RNA helicase 117 4e-26
Hs21071032 [A] KOG0341 DEAD-box protein abstrakt 116 6e-26
CE23832 [A] KOG0341 DEAD-box protein abstrakt 115 1e-25
At4g33370 [A] KOG0341 DEAD-box protein abstrakt 114 2e-25
Hs13514831 [A] KOG0343 RNA Helicase 114 3e-25
CE25231 [A] KOG0343 RNA Helicase 114 3e-25
CE07736 [A] KOG0335 ATP-dependent RNA helicase 114 4e-25
Hs13129006 [A] KOG0331 ATP-dependent RNA helicase 113 5e-25
At5g08620 [A] KOG0342 ATP-dependent RNA helicase pitchoune 113 5e-25
At5g05450 [A] KOG0345 ATP-dependent RNA helicase 112 2e-24
7298459 [A] KOG0333 U5 snRNP-like RNA helicase subunit 112 2e-24
CE11402 [A] KOG0334 RNA helicase 111 2e-24
CE06239 [A] KOG0344 ATP-dependent RNA helicase 111 2e-24
SPAC1F7.02c [A] KOG0342 ATP-dependent RNA helicase pitchoune 110 3e-24
7299006 [A] KOG0345 ATP-dependent RNA helicase 110 5e-24
CE23814 [A] KOG0340 ATP-dependent RNA helicase 109 8e-24
YFL002c [A] KOG0345 ATP-dependent RNA helicase 109 1e-23
ECU10g1680 [A] KOG0343 RNA Helicase 109 1e-23
SPBC24C6.02 [A] KOG0345 ATP-dependent RNA helicase 108 1e-23
Hs4826688 [J] KOG0327 Translation initiation factor 4F helicase ... 108 2e-23
Hs13787206 [A] KOG0342 ATP-dependent RNA helicase pitchoune 108 2e-23
At5g08610 [A] KOG0342 ATP-dependent RNA helicase pitchoune 107 3e-23
At3g09620 [A] KOG0334 RNA helicase 107 4e-23
YLR276c [A] KOG0346 RNA helicase 106 7e-23
ECU10g0690 [A] KOG0345 ATP-dependent RNA helicase 106 7e-23
CE29052 [A] KOG0335 ATP-dependent RNA helicase 106 9e-23
At5g63630 [A] KOG0342 ATP-dependent RNA helicase pitchoune 105 1e-22
At1g71370 [A] KOG0345 ATP-dependent RNA helicase 105 1e-22
SPAC1093.05 [A] KOG0343 RNA Helicase 105 2e-22
Hs8922976 [A] KOG0330 ATP-dependent RNA helicase 104 2e-22
At4g16630 [A] KOG0338 ATP-dependent RNA helicase 104 2e-22
CE27030 [A] KOG0338 ATP-dependent RNA helicase 104 3e-22
7293369 [A] KOG0343 RNA Helicase 103 6e-22
CE26853 [A] KOG0342 ATP-dependent RNA helicase pitchoune 103 7e-22
7300808 [A] KOG0342 ATP-dependent RNA helicase pitchoune 103 7e-22
YMR290c [A] KOG0342 ATP-dependent RNA helicase pitchoune 102 1e-21
At5g54910 [A] KOG0343 RNA Helicase 101 2e-21
SPAC22F3.08c [A] KOG0344 ATP-dependent RNA helicase 100 5e-21
At1g12770_1 [J] KOG0327 Translation initiation factor 4F helicas... 100 5e-21
At5g65900 [A] KOG0342 ATP-dependent RNA helicase pitchoune 100 6e-21
ECU06g1250 [A] KOG0337 ATP-dependent RNA helicase 100 8e-21
CE27728 [A] KOG0346 RNA helicase 99 2e-20
7295505 [A] KOG0346 RNA helicase 98 2e-20
At5g62190 [A] KOG0331 ATP-dependent RNA helicase 97 7e-20
SPCC1494.06c [A] KOG0346 RNA helicase 94 3e-19
CE26264 [A] KOG0335 ATP-dependent RNA helicase 94 4e-19
CE03821 [A] KOG0345 ATP-dependent RNA helicase 94 4e-19
At4g34910 [A] KOG0346 RNA helicase 94 6e-19
Hs4826686 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 93 7e-19
SPBC691.04 [A] KOG0342 ATP-dependent RNA helicase pitchoune 93 1e-18
At1g63250 [A] KOG0342 ATP-dependent RNA helicase pitchoune 92 1e-18
SPBC4F6.07c [A] KOG0347 RNA helicase 92 2e-18
7296530 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 91 5e-18
CE11190 [A] KOG0347 RNA helicase 90 8e-18
At2g07750 [A] KOG0342 ATP-dependent RNA helicase pitchoune 90 8e-18
Hs9966805 [A] KOG0347 RNA helicase 89 1e-17
At1g71280 [A] KOG0345 ATP-dependent RNA helicase 88 2e-17
CE27336 [A] KOG0334 RNA helicase 88 3e-17
At3g16840 [A] KOG0347 RNA helicase 88 3e-17
7296165 [A] KOG0330 ATP-dependent RNA helicase 88 3e-17
Hs21040373 [A] KOG0329 ATP-dependent RNA helicase 87 4e-17
YDR194c [A] KOG0342 ATP-dependent RNA helicase pitchoune 87 5e-17
Hs17474878 [A] KOG0333 U5 snRNP-like RNA helicase subunit 87 7e-17
Hs17505907 [A] KOG0348 ATP-dependent RNA helicase 86 2e-16
At5g19210 [J] KOG0327 Translation initiation factor 4F helicase ... 84 5e-16
SPBC21H7.04 [A] KOG0348 ATP-dependent RNA helicase 84 6e-16
Hs20551983 [A] KOG0345 ATP-dependent RNA helicase 82 2e-15
7293348 [A] KOG0348 ATP-dependent RNA helicase 80 5e-15
YBR142w [A] KOG0347 RNA helicase 80 7e-15
7294064 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 80 7e-15
CE29051 [A] KOG0335 ATP-dependent RNA helicase 80 9e-15
ECU05g1270 [A] KOG0331 ATP-dependent RNA helicase 77 4e-14
At3g06980 [A] KOG0331 ATP-dependent RNA helicase 77 4e-14
ECU07g1060 [A] KOG0344 ATP-dependent RNA helicase 75 2e-13
Hs22059599_1 [J] KOG0328 Predicted ATP-dependent RNA helicase FA... 75 2e-13
YNR038w [A] KOG0350 DEAD-box ATP-dependent RNA helicase 73 1e-12
CE27641 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 73 1e-12
YKR024c [A] KOG0348 ATP-dependent RNA helicase 72 2e-12
Hs17475661 [J] KOG0327 Translation initiation factor 4F helicase... 71 4e-12
CE00456 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 70 5e-12
Hs9506609 [A] KOG0340 ATP-dependent RNA helicase 69 2e-11
At4g09730 [A] KOG0331 ATP-dependent RNA helicase 67 6e-11
Hs22057430 [J] KOG0327 Translation initiation factor 4F helicase... 65 3e-10
Hs18595975 [A] KOG0335 ATP-dependent RNA helicase 65 3e-10
Hs20336298 [A] KOG0348 ATP-dependent RNA helicase 64 5e-10
7290730 [A] KOG0331 ATP-dependent RNA helicase 62 2e-09
YGL064c [A] KOG0335 ATP-dependent RNA helicase 55 2e-07
SPAC212.11 [L] KOG0351 ATP-dependent DNA helicase 54 4e-07
Hs20555745 [A] KOG0326 ATP-dependent RNA helicase 54 4e-07
CE27603 [A] KOG0922 DEAH-box RNA helicase 50 7e-06
>YOR046c [A] KOG0332 ATP-dependent RNA helicase
Length = 482
Score = 616 bits (1589), Expect = e-176
Identities = 321/481 (66%), Positives = 369/481 (75%), Gaps = 13/481 (2%)
Query: 1 MAQLSKEASDLMARLNI---KEPAKKASEDNDTTSXXXXXXXXXXXXXXXXPA------- 50
M+ ++ +DL+A L I KE + S S P
Sbjct: 1 MSDTKRDPADLLASLKIDNEKEDTSEVSTKETVKSQPEKTADSIKPAEKLVPKVEEKKTK 60
Query: 51 ---NKVINSEYEVKVNLADLQADANSPLYSVXXXXXXXXXXXXXXXXYAMKFQKPSKIQE 107
+ +I+SEYEVKV LAD+QAD NSPLYS YAMKFQKPSKIQE
Sbjct: 61 QEDSNLISSEYEVKVKLADIQADPNSPLYSAKSFDELGLAPELLKGIYAMKFQKPSKIQE 120
Query: 108 KALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICLSPARELARQTLE 167
+ALPLL+ +PP NMIAQSQSGTGKTAAFSLTMLTRV+P S QAICL+P+RELARQTLE
Sbjct: 121 RALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLE 180
Query: 168 VIQEMGKFTKTSSQLVVPDSFERNKPITANIVVGTPGTVLDLIRRKMLNLGSIKVFVLDE 227
V+QEMGKFTK +SQL+VPDSFE+NK I A ++VGTPGTVLDL+RRK++ L IK+FVLDE
Sbjct: 181 VVQEMGKFTKITSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDE 240
Query: 228 ADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAKKIIPTAVSLELQKNEVN 287
ADNMLD+QGLGDQCIRVK+FLPK QLVLFSATF D VRQYAKKI+P A +LELQ NEVN
Sbjct: 241 ADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVN 300
Query: 288 VSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQTANLLYAKLKKEGHQVSIL 347
V AIKQL+MDC NE K+ +L+ELYGL+TIGSSIIFV TK+TAN+LY KLK EGH+VSIL
Sbjct: 301 VDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSIL 360
Query: 348 HGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVNYDLPTLPNGQADPSTY 407
HGDLQ+Q+RDRLIDDFREGRSKVLITTNVLARGIDIP+VSMVVNYDLPTL NGQADP+TY
Sbjct: 361 HGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATY 420
Query: 408 VHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYFGDIEITKVPTDDLDEMETIVKKAL 467
+H VAISF+HDK SF +LSAIQKYFGDIE+T+VPTDD DE+E IVKK L
Sbjct: 421 IHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPTDDWDEVEKIVKKVL 480
Query: 468 K 468
K
Sbjct: 481 K 481
>SPBC12C2.06 [A] KOG0332 ATP-dependent RNA helicase
Length = 503
Score = 456 bits (1173), Expect = e-128
Identities = 230/418 (55%), Positives = 302/418 (72%), Gaps = 1/418 (0%)
Query: 51 NKVINSEYEVKVNLADLQADANSPLYSVXXXXXXXXXXXXXXXXYAMKFQKPSKIQEKAL 110
+ +I ++ EV+V LADLQAD NSPL+SV Y+MKFQKPSKIQEKAL
Sbjct: 86 SNLIPNKNEVRVKLADLQADPNSPLFSVKSFEELELKPELLKGIYSMKFQKPSKIQEKAL 145
Query: 111 PLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICLSPARELARQTLEVIQ 170
PLL+ +PP NMI QSQSGTGKTAAF+LTML+RVD +V QAICL+P+RELARQ ++V+
Sbjct: 146 PLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVT 205
Query: 171 EMGKFTKTSSQLVVPDSFERNKPITANIVVGTPGTVLDLIRRKMLNLGSIKVFVLDEADN 230
EMGK+T+ + + DS + I A IV+GTPGTV+DL++R+ L+ IKVFVLDEADN
Sbjct: 206 EMGKYTEVKTAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADN 265
Query: 231 MLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAKKIIPTAVSLELQKNEVNVSA 290
MLD+QGLGDQ +R+K LP+ Q+VLFSATF + V +YA++ P A + L+ E++V
Sbjct: 266 MLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEG 325
Query: 291 IKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQTANLLYAKLKKEGHQVSILHGD 350
IKQL+MDC +EEHKY +L ELYGLLTIG SIIF K K TA + ++ +GH V+ L G+
Sbjct: 326 IKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGN 385
Query: 351 LQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVNYDLPTLPNGQADPSTYVHX 410
L+ RD ++D FR G SKVL+TTNV+ARGID+ V++VVNYD+P G+ DP TY+H
Sbjct: 386 LEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHR 445
Query: 411 XXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYFGDIEITKVPTDDLDEMETIVKKALK 468
V+I+F+HDKKS+E ++AIQ+YF IT+VPTDD +E+E +VK ALK
Sbjct: 446 IGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYF-QRPITRVPTDDYEELEKVVKNALK 502
>Hs8922886 [A] KOG0332 ATP-dependent RNA helicase
Length = 478
Score = 354 bits (909), Expect = 1e-97
Identities = 197/458 (43%), Positives = 280/458 (61%), Gaps = 8/458 (1%)
Query: 12 MARLNIKEPAKKASEDN---DTTSXXXXXXXXXXXXXXXXPANKVINSEYEVKVNLAD-L 67
M L IKE KA + +T+ NK+I S N + L
Sbjct: 20 MTNLQIKEEKVKADTNGIIKTSTTAEKTDEEEKEDRAAQSLLNKLIRSNLVDNTNQVEVL 79
Query: 68 QADANSPLYSVXXXXXXXXXXXXXXXXYAMKFQKPSKIQEKALPLLIRDPPHNMIAQSQS 127
Q D NSPLYSV YAM F +PSKIQE ALP+++ +PP N+IAQSQS
Sbjct: 80 QRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQS 139
Query: 128 GTGKTAAFSLTMLTRVDPNVNSTQAICLSPARELARQTLEVIQEMGKFTKTS--SQLVVP 185
GTGKTAAF L ML+RV+P+ Q +CLSP ELA QT +VI++MGKF + V
Sbjct: 140 GTGKTAAFVLAMLSRVEPSDRYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRG 199
Query: 186 DSFERNKPITANIVVGTPGTVLDLIRR-KMLNLGSIKVFVLDEADNMLDKQGLGDQCIRV 244
+ ER + I+ IV+GTPGTVLD + K ++ IKVFVLDEAD M+ QG DQ IR+
Sbjct: 200 NKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRI 259
Query: 245 KKFLPKTCQLVLFSATFDDGVRQYAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHK 304
++ LP+ CQ++LFSATF+D V ++A+K++P ++L++ E + IKQ ++ C + + K
Sbjct: 260 QRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEK 319
Query: 305 YTILSELYGLLTIGSSIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFR 364
+ L LYG +TI ++IF T++TA+ L A+L KEGHQV++L G++ + R +I+ FR
Sbjct: 320 FQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFR 379
Query: 365 EGRSKVLITTNVLARGIDIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAI 424
EG+ KVL+TTNV ARGID+ VS+V+N+DLP +G D TY+H +A+
Sbjct: 380 EGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAV 439
Query: 425 SFIHDKKSFEVLSAIQKYFGDIEITKVPTDDLDEMETI 462
+ + K S +L+ IQ++F +I ++ TDDLDE+E I
Sbjct: 440 NMVDSKHSMNILNRIQEHFNK-KIERLDTDDLDEIEKI 476
>Hs6005743 [A] KOG0332 ATP-dependent RNA helicase
Length = 479
Score = 350 bits (899), Expect = 2e-96
Identities = 189/416 (45%), Positives = 268/416 (63%), Gaps = 5/416 (1%)
Query: 51 NKVINSEYEVKVNLAD-LQADANSPLYSVXXXXXXXXXXXXXXXXYAMKFQKPSKIQEKA 109
NK+I S N + LQ D NSPLYSV YAM F +PSKIQE A
Sbjct: 63 NKLIRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENA 122
Query: 110 LPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICLSPARELARQTLEVI 169
LPL++ +PP N+IAQSQSGTGKTAAF L ML++V+P Q +CLSP ELA QT +VI
Sbjct: 123 LPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVI 182
Query: 170 QEMGKFTKTS--SQLVVPDSFERNKPITANIVVGTPGTVLDLIRR-KMLNLGSIKVFVLD 226
++MGKF + V + ER + I+ IV+GTPGTVLD + K ++ IKVFVLD
Sbjct: 183 EQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLD 242
Query: 227 EADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAKKIIPTAVSLELQKNEV 286
EAD M+ QG DQ IR+++ LP+ CQ++LFSATF+D V ++A+K++P ++L++ E
Sbjct: 243 EADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEE 302
Query: 287 NVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQTANLLYAKLKKEGHQVSI 346
+ IKQ ++ C + + K+ L LYG +TI ++IF T++TA+ L A+L KEGHQV++
Sbjct: 303 TLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVAL 362
Query: 347 LHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVNYDLPTLPNGQADPST 406
L G++ + R +I+ FREG+ KVL+TTNV ARGID+ VS+V+N+DLP +G D T
Sbjct: 363 LSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNET 422
Query: 407 YVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYFGDIEITKVPTDDLDEMETI 462
Y+H +A++ + K S +L+ IQ++F +I ++ TDDLDE+E I
Sbjct: 423 YLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNK-KIERLDTDDLDEIEKI 477
>Hs21327697 [A] KOG0332 ATP-dependent RNA helicase
Length = 369
Score = 301 bits (770), Expect = 2e-81
Identities = 162/369 (43%), Positives = 237/369 (63%), Gaps = 5/369 (1%)
Query: 97 MKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICLS 156
M F +PSKIQE ALP+++ PP N+IAQSQSGTGKTAAF L ML+RV+ Q +CL+
Sbjct: 1 MGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNALELFPQCLCLA 60
Query: 157 PARELARQTLEVIQEMGKFTKTSSQL--VVPDSFERNKPITANIVVGTPGTVLD-LIRRK 213
P ELA QT V+++MGKF + + + R IT I++GTPGTVLD + K
Sbjct: 61 PTYELALQTGRVVEQMGKFCVDVQVMYAIRGNRIPRGTDITKQIIIGTPGTVLDWCFKLK 120
Query: 214 MLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAKKII 273
+++L I+VFVLDEAD M+D QG D IR+++ LP CQ++LFSATF+D V +A++II
Sbjct: 121 LIDLTKIRVFVLDEADVMIDTQGFSDHSIRIQRALPSECQMLLFSATFEDSVWHFAERII 180
Query: 274 PTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQTANLL 333
P ++L+K E+ ++ I+Q ++ C++ + KY L +YG +TIG +IIF +T++ A L
Sbjct: 181 PDPNVIKLRKEELTLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWL 240
Query: 334 YAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVNYD 393
++ ++GHQVS+L G+L + R +I FR+G+ KVLITTNV ARGID+ V++VVN+D
Sbjct: 241 TVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFD 300
Query: 394 LPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYFGDIEITKVPT 453
LP + D TY+H +A + I + L IQ +F I ++
Sbjct: 301 LPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMI-EVDELPSLMKIQDHFNS-SIKQLNA 358
Query: 454 DDLDEMETI 462
+D+DE+E I
Sbjct: 359 EDMDEIEKI 367
>HsM7019399 [A] KOG0332 ATP-dependent RNA helicase
Length = 369
Score = 299 bits (765), Expect = 7e-81
Identities = 161/369 (43%), Positives = 236/369 (63%), Gaps = 5/369 (1%)
Query: 97 MKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICLS 156
M F +PSKIQE ALP+++ PP N+IAQSQSGTGKTAAF L ML+RV+ Q +CL+
Sbjct: 1 MGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNALELFPQCLCLA 60
Query: 157 PARELARQTLEVIQEMGKFTKTSSQL--VVPDSFERNKPITANIVVGTPGTVLD-LIRRK 213
P ELA QT V+++MGKF + + + R IT I++GTPGTVLD + K
Sbjct: 61 PTYELALQTGRVVEQMGKFCVDVQVMYAIRGNRIPRGTDITKQIIIGTPGTVLDWCFKLK 120
Query: 214 MLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAKKII 273
+++L I+VFVLDEAD M+D QG D IR+++ LP CQ++LFSATF+D V +A++II
Sbjct: 121 LIDLTKIRVFVLDEADVMIDTQGFSDHSIRIQRALPSECQMLLFSATFEDSVWHFAERII 180
Query: 274 PTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQTANLL 333
P ++L+K E+ ++ I+Q ++ C++ + KY L +YG +TIG +IIF +T++ A L
Sbjct: 181 PDPNVIKLRKEELTLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWL 240
Query: 334 YAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVNYD 393
++ ++GHQVS+L G+L + R + FR+G+ KVLITTNV ARGID+ V++VVN+D
Sbjct: 241 TVEMIQDGHQVSLLSGELTVEQRASITQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFD 300
Query: 394 LPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYFGDIEITKVPT 453
LP + D TY+H +A + I + L IQ +F I ++
Sbjct: 301 LPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMI-EVDELPSLMKIQDHFNS-SIKQLNA 358
Query: 454 DDLDEMETI 462
+D+DE+E I
Sbjct: 359 EDMDEIEKI 367
>CE18221 [A] KOG0332 ATP-dependent RNA helicase
Length = 613
Score = 267 bits (683), Expect = 2e-71
Identities = 166/436 (38%), Positives = 243/436 (55%), Gaps = 28/436 (6%)
Query: 51 NKVINSEYEV-KVNLADLQA-DANSPLYSVXXXXXXXXXXXXXXXXYAMKFQKPSKIQEK 108
NK I E ++ K + D+Q D SPLYS+ M FQ P++IQE
Sbjct: 179 NKFIQKEVKMMKDVVVDVQRQDPKSPLYSISSFRELRLKPEVLKALDTMNFQFPTRIQET 238
Query: 109 ALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICLSPARELARQTLEV 168
ALPLL+ +PP N+IAQ+QSGTGKTAAF LTML R+D N+ Q ICL+P ELA+Q EV
Sbjct: 239 ALPLLLMEPPSNLIAQAQSGTGKTAAFVLTMLCRIDVNLMCPQCICLAPTLELAKQIGEV 298
Query: 169 IQEMGKFTKTSSQLVVPDSFE-------RNKPITANIVVGTPGTVLDLIRR-KMLNLGSI 220
+++MGKF L + + + R + +T IV+GTPG D +++ K ++ I
Sbjct: 299 VEKMGKFI---DNLKIHYAIKGGNMAAMRGRKLTEQIVIGTPGITRDYLQKYKCIDPSKI 355
Query: 221 KVFVLDEADNMLDKQGLGDQCIRVKKFLPK---TCQLVLFSATFDDGVRQYAKKIIPTAV 277
+ VLDEAD M+ QG D + + + Q +LFSAT+D+ V +A KII A+
Sbjct: 356 RCLVLDEADVMIYHQGFTDISTTIYNMVEDASDSVQSMLFSATYDEPVINFATKIIKNAI 415
Query: 278 SLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQTANLLYAKL 337
+ L++ E + IKQ ++ C + KY + LY L + SS+IF TK + LY +
Sbjct: 416 VVMLKREEQALPNIKQFYVQCACRDSKYAAIVNLYSGLAVASSVIFCHTKASVMWLYENM 475
Query: 338 KKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVNYDL--- 394
+ GHQV +LHGD+ +R I F+ G KVLITTNV ARGID+ VS+V+NYDL
Sbjct: 476 RARGHQVDVLHGDMTVVERADTIIHFKRGDFKVLITTNVFARGIDVAQVSVVINYDLPIK 535
Query: 395 ------PTLPNG--QADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYFGDI 446
P + +G Q D TY+H +AI+ I + S +++ ++ +F +
Sbjct: 536 YTDEGTPMVVDGFTQPDCETYLHRIGRTGRFGKTGIAINLIDSEDSMNMINVLENHF-QM 594
Query: 447 EITKVPTDDLDEMETI 462
+I ++ +L E+E I
Sbjct: 595 KIARMDPSNLVELEAI 610
>CE18220 [A] KOG0332 ATP-dependent RNA helicase
Length = 638
Score = 267 bits (683), Expect = 2e-71
Identities = 166/436 (38%), Positives = 243/436 (55%), Gaps = 28/436 (6%)
Query: 51 NKVINSEYEV-KVNLADLQA-DANSPLYSVXXXXXXXXXXXXXXXXYAMKFQKPSKIQEK 108
NK I E ++ K + D+Q D SPLYS+ M FQ P++IQE
Sbjct: 204 NKFIQKEVKMMKDVVVDVQRQDPKSPLYSISSFRELRLKPEVLKALDTMNFQFPTRIQET 263
Query: 109 ALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICLSPARELARQTLEV 168
ALPLL+ +PP N+IAQ+QSGTGKTAAF LTML R+D N+ Q ICL+P ELA+Q EV
Sbjct: 264 ALPLLLMEPPSNLIAQAQSGTGKTAAFVLTMLCRIDVNLMCPQCICLAPTLELAKQIGEV 323
Query: 169 IQEMGKFTKTSSQLVVPDSFE-------RNKPITANIVVGTPGTVLDLIRR-KMLNLGSI 220
+++MGKF L + + + R + +T IV+GTPG D +++ K ++ I
Sbjct: 324 VEKMGKFI---DNLKIHYAIKGGNMAAMRGRKLTEQIVIGTPGITRDYLQKYKCIDPSKI 380
Query: 221 KVFVLDEADNMLDKQGLGDQCIRVKKFLPK---TCQLVLFSATFDDGVRQYAKKIIPTAV 277
+ VLDEAD M+ QG D + + + Q +LFSAT+D+ V +A KII A+
Sbjct: 381 RCLVLDEADVMIYHQGFTDISTTIYNMVEDASDSVQSMLFSATYDEPVINFATKIIKNAI 440
Query: 278 SLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQTANLLYAKL 337
+ L++ E + IKQ ++ C + KY + LY L + SS+IF TK + LY +
Sbjct: 441 VVMLKREEQALPNIKQFYVQCACRDSKYAAIVNLYSGLAVASSVIFCHTKASVMWLYENM 500
Query: 338 KKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVNYDL--- 394
+ GHQV +LHGD+ +R I F+ G KVLITTNV ARGID+ VS+V+NYDL
Sbjct: 501 RARGHQVDVLHGDMTVVERADTIIHFKRGDFKVLITTNVFARGIDVAQVSVVINYDLPIK 560
Query: 395 ------PTLPNG--QADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYFGDI 446
P + +G Q D TY+H +AI+ I + S +++ ++ +F +
Sbjct: 561 YTDEGTPMVVDGFTQPDCETYLHRIGRTGRFGKTGIAINLIDSEDSMNMINVLENHF-QM 619
Query: 447 EITKVPTDDLDEMETI 462
+I ++ +L E+E I
Sbjct: 620 KIARMDPSNLVELEAI 635
>CE18219 [A] KOG0332 ATP-dependent RNA helicase
Length = 1022
Score = 267 bits (683), Expect = 2e-71
Identities = 166/436 (38%), Positives = 243/436 (55%), Gaps = 28/436 (6%)
Query: 51 NKVINSEYEV-KVNLADLQA-DANSPLYSVXXXXXXXXXXXXXXXXYAMKFQKPSKIQEK 108
NK I E ++ K + D+Q D SPLYS+ M FQ P++IQE
Sbjct: 588 NKFIQKEVKMMKDVVVDVQRQDPKSPLYSISSFRELRLKPEVLKALDTMNFQFPTRIQET 647
Query: 109 ALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICLSPARELARQTLEV 168
ALPLL+ +PP N+IAQ+QSGTGKTAAF LTML R+D N+ Q ICL+P ELA+Q EV
Sbjct: 648 ALPLLLMEPPSNLIAQAQSGTGKTAAFVLTMLCRIDVNLMCPQCICLAPTLELAKQIGEV 707
Query: 169 IQEMGKFTKTSSQLVVPDSFE-------RNKPITANIVVGTPGTVLDLIRR-KMLNLGSI 220
+++MGKF L + + + R + +T IV+GTPG D +++ K ++ I
Sbjct: 708 VEKMGKFI---DNLKIHYAIKGGNMAAMRGRKLTEQIVIGTPGITRDYLQKYKCIDPSKI 764
Query: 221 KVFVLDEADNMLDKQGLGDQCIRVKKFLPK---TCQLVLFSATFDDGVRQYAKKIIPTAV 277
+ VLDEAD M+ QG D + + + Q +LFSAT+D+ V +A KII A+
Sbjct: 765 RCLVLDEADVMIYHQGFTDISTTIYNMVEDASDSVQSMLFSATYDEPVINFATKIIKNAI 824
Query: 278 SLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQTANLLYAKL 337
+ L++ E + IKQ ++ C + KY + LY L + SS+IF TK + LY +
Sbjct: 825 VVMLKREEQALPNIKQFYVQCACRDSKYAAIVNLYSGLAVASSVIFCHTKASVMWLYENM 884
Query: 338 KKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVNYDL--- 394
+ GHQV +LHGD+ +R I F+ G KVLITTNV ARGID+ VS+V+NYDL
Sbjct: 885 RARGHQVDVLHGDMTVVERADTIIHFKRGDFKVLITTNVFARGIDVAQVSVVINYDLPIK 944
Query: 395 ------PTLPNG--QADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYFGDI 446
P + +G Q D TY+H +AI+ I + S +++ ++ +F +
Sbjct: 945 YTDEGTPMVVDGFTQPDCETYLHRIGRTGRFGKTGIAINLIDSEDSMNMINVLENHF-QM 1003
Query: 447 EITKVPTDDLDEMETI 462
+I ++ +L E+E I
Sbjct: 1004 KIARMDPSNLVELEAI 1019
>At3g53110 [A] KOG0332 ATP-dependent RNA helicase
Length = 496
Score = 253 bits (646), Expect = 4e-67
Identities = 136/359 (37%), Positives = 221/359 (60%), Gaps = 12/359 (3%)
Query: 97 MKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICLS 156
MKF+KPSKIQ +LP+++ P ++IAQ+ +G+GKT F L ML+RVDP + QA+C+
Sbjct: 110 MKFEKPSKIQAISLPMIMTPPHKHLIAQAHNGSGKTTCFVLGMLSRVDPTLREPQALCIC 169
Query: 157 PARELARQTLEVIQEMGKFTKTSSQLVVPDSFE------RNKPITANIVVGTPGTVLDLI 210
P RELA Q +EV+Q+MGKFT +++L VPDS R P++A++V+GTPGT+ +
Sbjct: 170 PTRELANQNMEVLQKMGKFTGITAELAVPDSTRGAPAATRGAPVSAHVVIGTPGTLKKWM 229
Query: 211 RRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPK---TCQLVLFSATFDDGVRQ 267
K L L +K+ V DEAD+ML G D +++ K + + Q++LFSATF++ V+
Sbjct: 230 AFKRLGLNHLKILVFDEADHMLATDGFRDDSLKIMKDIGRVNPNFQVLLFSATFNETVKD 289
Query: 268 YAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTIL-SELYGLLTIGSSIIFVKT 326
+ + + L +++ ++ + ++KQ + C E++K ++ ++ L IG +IIFVKT
Sbjct: 290 FVARTVKDPNQLFVKREDLALDSVKQYKVVCPKEQNKIEVIKDQIMELGDIGQTIIFVKT 349
Query: 327 KQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSV 386
K +A ++ L + G+ V+ +HG+L DRD+++ +F+E ++VLI T+V+ARG D V
Sbjct: 350 KASAQKVHKALAEMGYDVTSVHGNLTESDRDKIVKEFKECLTQVLIATDVIARGFDQQRV 409
Query: 387 SMVVNYDLPT-LPNGQADPSTYVHXXXXXXXXXXXXVAIS-FIHDKKSFEVLSAIQKYF 443
++VVNY+LPT G+ D Y+H + + D EV+ I+KYF
Sbjct: 410 NLVVNYNLPTKYETGEPDYEVYLHRVGRAGRFGRKGAVFNLLLDDGWDKEVMEKIEKYF 468
>CE09901 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 238 bits (607), Expect = 1e-62
Identities = 134/367 (36%), Positives = 217/367 (58%), Gaps = 15/367 (4%)
Query: 95 YAMKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAIC 154
YA F+KPS IQ++A+P +++ ++IAQ+QSGTGKTA FS+++L +D V TQA+
Sbjct: 42 YAYGFEKPSAIQQRAVPAILK--ARDVIAQAQSGTGKTATFSISVLQSLDTQVRETQALI 99
Query: 155 LSPARELARQTLEVIQEMGKFTKTSSQLVVPDSFE----RNKPITANIVVGTPGTVLDLI 210
LSP RELA Q +V+ +G + + + R ++V GTPG V D+I
Sbjct: 100 LSPTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMI 159
Query: 211 RRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAK 270
RR+ L +IK+ VLDEAD ML+K G +Q + ++LP Q+VL SAT + +
Sbjct: 160 RRRNLRTRAIKLLVLDEADEMLNK-GFKEQLYDIYRYLPPGAQVVLLSATLPHEILEMTS 218
Query: 271 KIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQTA 330
K + + + ++++E+ + IKQ F+ D EE K+ L +LY LTI +++F T++
Sbjct: 219 KFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLIDLYDTLTITQAVLFCNTRRKV 278
Query: 331 NLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVV 390
+ L K+K+ VS +HGD++ +DRD ++ +FR G ++VLI+T+V ARG+D+P VS+V+
Sbjct: 279 DWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTDVWARGLDVPQVSLVI 338
Query: 391 NYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYFGDIEITK 450
NYDLP + Y+H VAI+F+ + +L I++Y+ +I +
Sbjct: 339 NYDLPN------NRELYIHRIGRSGRFGRKGVAINFV-KQDDVRILRDIEQYY-STQIDE 390
Query: 451 VPTDDLD 457
+P + D
Sbjct: 391 MPMNIAD 397
>7299019 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 235 bits (599), Expect = 1e-61
Identities = 134/367 (36%), Positives = 215/367 (58%), Gaps = 15/367 (4%)
Query: 95 YAMKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAIC 154
YA F+KPS IQ++++ +++ ++IAQ+QSGTGKTA FS+++L +D + TQ +C
Sbjct: 42 YAYGFEKPSAIQQRSITPIVKG--RDVIAQAQSGTGKTATFSISILQSLDTTLRETQVLC 99
Query: 155 LSPARELARQTLEVIQEMGKFTKTSSQLVVPDSFE----RNKPITANIVVGTPGTVLDLI 210
LSP RELA Q +VI +G + + + R +IV GTPG V D+I
Sbjct: 100 LSPTRELAVQIQKVILALGDMMNVQCHVCIGGTNLGEDIRKLDYGQHIVSGTPGRVFDMI 159
Query: 211 RRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAK 270
+R++L +IK+ VLDEAD ML+K G +Q V ++LP Q+VL SAT + +
Sbjct: 160 KRRVLRTRAIKMLVLDEADEMLNK-GFKEQIYDVYRYLPPATQVVLISATLPHEILEMTS 218
Query: 271 KIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQTA 330
K + + + ++++E+ + IKQ F+ + EE K+ L +LY LTI ++IF TK+
Sbjct: 219 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 278
Query: 331 NLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVV 390
+ L K+++ VS +HGD+ ++RD ++ +FR G+S+VLITT+V ARGID+ VS+V+
Sbjct: 279 DWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRAGQSRVLITTDVWARGIDVQQVSLVI 338
Query: 391 NYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYFGDIEITK 450
NYDLP + Y+H VAI+F+ +L I++Y+ +I +
Sbjct: 339 NYDLPN------NRELYIHRIGRSGRFGRKGVAINFV-KSDDIRILRDIEQYY-STQIDE 390
Query: 451 VPTDDLD 457
+P + D
Sbjct: 391 MPMNVAD 397
>Hs7661920 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 411
Score = 231 bits (588), Expect = 2e-60
Identities = 132/367 (35%), Positives = 214/367 (57%), Gaps = 15/367 (4%)
Query: 95 YAMKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAIC 154
YA F+KPS IQ++A+ +I+ ++IAQSQSGTGKTA FS+++L +D V TQA+
Sbjct: 54 YAYGFEKPSAIQQRAIKQIIKG--RDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALI 111
Query: 155 LSPARELARQTLEVIQEMGKFTKTSSQLVVPDSFE----RNKPITANIVVGTPGTVLDLI 210
L+P RELA Q + + +G + + + R ++V GTPG V D+I
Sbjct: 112 LAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMI 171
Query: 211 RRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAK 270
RR+ L +IK+ VLDEAD ML+K G +Q V ++LP Q+VL SAT + +
Sbjct: 172 RRRSLRTRAIKMLVLDEADEMLNK-GFKEQIYDVYRYLPPATQVVLISATLPHEILEMTN 230
Query: 271 KIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQTA 330
K + + + ++++E+ + IKQ F+ + EE K+ L +LY LTI ++IF TK+
Sbjct: 231 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 290
Query: 331 NLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVV 390
+ L K+++ VS +HGD+ ++R+ ++ +FR G S+VLI+T+V ARG+D+P VS+++
Sbjct: 291 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 350
Query: 391 NYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYFGDIEITK 450
NYDLP + Y+H VAI+F+ + +L I++Y+ +I +
Sbjct: 351 NYDLPN------NRELYIHRIGRSGRYGRKGVAINFVKN-DDIRILRDIEQYY-STQIDE 402
Query: 451 VPTDDLD 457
+P + D
Sbjct: 403 MPMNVAD 409
>7297048 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 389
Score = 229 bits (584), Expect = 7e-60
Identities = 133/353 (37%), Positives = 205/353 (57%), Gaps = 14/353 (3%)
Query: 95 YAMKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAIC 154
Y F+KPS IQ++A+ +R ++IAQ+QSGTGKTA FS+ +L ++D ++ QA+
Sbjct: 32 YGYGFEKPSAIQQRAIIPCVRG--RDVIAQAQSGTGKTATFSIAILQQIDTSIRECQALI 89
Query: 155 LSPARELARQTLEVIQEMGKFTKTSSQLVVPDSFERNKPIT----ANIVVGTPGTVLDLI 210
L+P RELA Q V+ +G++ K S + + R ++VVGTPG V D+I
Sbjct: 90 LAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILESGCHVVVGTPGRVYDMI 149
Query: 211 RRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAK 270
RK+L IK+FVLDEAD ML + G DQ V K LP Q++L SAT V + ++
Sbjct: 150 NRKVLRTQYIKLFVLDEADEMLSR-GFKDQIQDVFKMLPPDVQVILLSATMPPDVLEVSR 208
Query: 271 KIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQTA 330
+ VS+ ++K E+ + IKQ +++ E K L +LY L+I S+IF T++
Sbjct: 209 CFMRDPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDLYDTLSITQSVIFCNTRRKV 268
Query: 331 NLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVV 390
+ L ++ VS +HGD++ +DR+ ++ FR G S+VLITT++LARGID+ VS+V+
Sbjct: 269 DQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVI 328
Query: 391 NYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYF 443
NYDLP ++ Y+H VAI+FI D +L I++++
Sbjct: 329 NYDLP------SNRENYIHRIGRGGRFGRKGVAINFITDDDR-RILKDIEQFY 374
>At1g72730 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 414
Score = 225 bits (573), Expect = 1e-58
Identities = 132/367 (35%), Positives = 214/367 (57%), Gaps = 15/367 (4%)
Query: 95 YAMKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAIC 154
YA F+KPS IQ++ + + ++I Q+QSGTGKTA F +L ++D ++ QA+
Sbjct: 57 YAYGFEKPSAIQQRGIIPFCKGL--DVIQQAQSGTGKTATFCSGVLQQLDISLVQCQALV 114
Query: 155 LSPARELARQTLEVIQEMGKFTKTSSQLVVPDSFERNKPIT----ANIVVGTPGTVLDLI 210
L+P RELA+Q +V++ +G + +Q V + R ++VVGTPG V DL+
Sbjct: 115 LAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSGVHVVVGTPGRVFDLL 174
Query: 211 RRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAK 270
RR+ L +IK+FVLDEAD ML + G DQ + + LP Q+ +FSAT + +
Sbjct: 175 RRQSLRADAIKMFVLDEADEMLSR-GFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITR 233
Query: 271 KIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQTA 330
K + V + ++++E+ + IKQ +++ D EE K L +LY L I S+IFV T++
Sbjct: 234 KFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKV 293
Query: 331 NLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVV 390
+ L K++ H VS HGD+ RD ++ +FR G S+VLITT++LARGID+ VS+V+
Sbjct: 294 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 353
Query: 391 NYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYFGDIEITK 450
N+DLPT P Y+H VAI+F+ + +++ IQ+++ ++ + +
Sbjct: 354 NFDLPT------QPENYLHRIGRSGRFGRKGVAINFMTSEDE-RMMADIQRFY-NVVVEE 405
Query: 451 VPTDDLD 457
+P++ D
Sbjct: 406 LPSNVAD 412
>Hs4503531 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 407
Score = 224 bits (572), Expect = 2e-58
Identities = 131/354 (37%), Positives = 210/354 (59%), Gaps = 15/354 (4%)
Query: 95 YAMKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAIC 154
YA F+KPS IQ++A+ I+ +++IAQ+QSGTGKTA F++++L +++ TQA+
Sbjct: 49 YAYGFEKPSAIQQRAIIPCIKG--YDVIAQAQSGTGKTATFAISILQQLEIEFKETQALV 106
Query: 155 LSPARELARQTLEVIQEMGKFTKTSSQLVVPDSFERNK-----PITANIVVGTPGTVLDL 209
L+P RELA+Q +VI +G + + + + RN+ +IVVGTPG V D+
Sbjct: 107 LAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDM 166
Query: 210 IRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYA 269
+ R+ L+ IK+FVLDEAD ML + G DQ + + L + Q+V SAT V +
Sbjct: 167 LNRRYLSPKWIKMFVLDEADEMLSR-GFKDQIYEIFQKLNTSIQVVFASATMPTDVLEVT 225
Query: 270 KKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQT 329
KK + + + ++K E+ + IKQ +++ + EE K L +LY LTI ++IF+ T++
Sbjct: 226 KKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRK 285
Query: 330 ANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMV 389
+ L K+ VS LHGD+ ++RD ++ +FR G S+VLITT++LARGID+ VS+V
Sbjct: 286 VDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLV 345
Query: 390 VNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYF 443
+NYDLPT + Y+H VAI+F+ ++ +L I+ ++
Sbjct: 346 INYDLPT------NRENYIHRIGRGGRFGRKGVAINFVTEEDK-RILRDIETFY 392
>YKR059w [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 395
Score = 224 bits (570), Expect = 3e-58
Identities = 128/359 (35%), Positives = 210/359 (57%), Gaps = 14/359 (3%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICLSPA 158
F++PS IQ++A+ +I H+++AQ+QSGTGKT FS+ L R+D +V + QA+ L+P
Sbjct: 42 FEEPSAIQQRAIMPIIEG--HDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPT 99
Query: 159 RELARQTLEVIQEMGKFTKTSSQLVVPD-SFERNKP--ITANIVVGTPGTVLDLIRRKML 215
RELA Q +V+ + + SF + A IVVGTPG V D I+R+
Sbjct: 100 RELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRF 159
Query: 216 NLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAKKIIPT 275
IK+F+LDEAD ML G +Q ++ LP T Q+VL SAT + V + K +
Sbjct: 160 RTDKIKMFILDEADEMLSS-GFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRN 218
Query: 276 AVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQTANLLYA 335
V + ++K+E+ + IKQ +++ + EE+KY L++LY +++ ++IF T++ L
Sbjct: 219 PVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTT 278
Query: 336 KLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVNYDLP 395
KL+ + VS ++ DL Q+RD ++ +FR G S++LI+T++LARGID+ VS+V+NYDLP
Sbjct: 279 KLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLP 338
Query: 396 TLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYFGDIEITKVPTD 454
A+ Y+H VAI+F+ + + ++K++ +I ++P+D
Sbjct: 339 ------ANKENYIHRIGRGGRFGRKGVAINFV-TNEDVGAMRELEKFY-STQIEELPSD 389
>YJL138c [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 395
Score = 224 bits (570), Expect = 3e-58
Identities = 128/359 (35%), Positives = 210/359 (57%), Gaps = 14/359 (3%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICLSPA 158
F++PS IQ++A+ +I H+++AQ+QSGTGKT FS+ L R+D +V + QA+ L+P
Sbjct: 42 FEEPSAIQQRAIMPIIEG--HDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPT 99
Query: 159 RELARQTLEVIQEMGKFTKTSSQLVVPD-SFERNKP--ITANIVVGTPGTVLDLIRRKML 215
RELA Q +V+ + + SF + A IVVGTPG V D I+R+
Sbjct: 100 RELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRF 159
Query: 216 NLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAKKIIPT 275
IK+F+LDEAD ML G +Q ++ LP T Q+VL SAT + V + K +
Sbjct: 160 RTDKIKMFILDEADEMLSS-GFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRN 218
Query: 276 AVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQTANLLYA 335
V + ++K+E+ + IKQ +++ + EE+KY L++LY +++ ++IF T++ L
Sbjct: 219 PVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTT 278
Query: 336 KLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVNYDLP 395
KL+ + VS ++ DL Q+RD ++ +FR G S++LI+T++LARGID+ VS+V+NYDLP
Sbjct: 279 KLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLP 338
Query: 396 TLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYFGDIEITKVPTD 454
A+ Y+H VAI+F+ + + ++K++ +I ++P+D
Sbjct: 339 ------ANKENYIHRIGRGGRFGRKGVAINFV-TNEDVGAMRELEKFY-STQIEELPSD 389
>YDR021w [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 224 bits (570), Expect = 3e-58
Identities = 128/366 (34%), Positives = 213/366 (57%), Gaps = 16/366 (4%)
Query: 95 YAMKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAIC 154
Y+ F+ PS IQ +A+ +I ++IAQ+QSGTGKTA F++ +L +D QA+
Sbjct: 39 YSYGFEAPSSIQSRAITQIISGK--DVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALI 96
Query: 155 LSPARELARQTLEVIQEMGKFTKTSSQLV-----VPDSFERNKPITANIVVGTPGTVLDL 209
LSP RELA Q +V++ +G + ++ + + D ++ + V GTPG VLD+
Sbjct: 97 LSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDM 156
Query: 210 IRRKMLNLGSIKVFVLDEADNMLDKQ-GLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQY 268
I+++ML ++++ VLDEAD +L + G Q + LPK CQ+V+ SAT + + +
Sbjct: 157 IKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSATMNKDILEV 216
Query: 269 AKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQ 328
+K + V + ++++E+++ IKQ ++ D EE K+ L ++Y LTI +IF TK+
Sbjct: 217 TRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQCVIFCNTKK 276
Query: 329 TANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSM 388
+ L +L + V +HGD++ ++RD++++DFR G S+VLI+T+V ARGID+ VS+
Sbjct: 277 KVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSL 336
Query: 389 VVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYFGDIEI 448
V+NYDLP + Y+H VAI+FI K L I+K++ I+I
Sbjct: 337 VINYDLPEI------IENYIHRIGRSGRFGRKGVAINFI-TKADLAKLREIEKFY-SIKI 388
Query: 449 TKVPTD 454
+P +
Sbjct: 389 NPMPAN 394
>Hs4503529 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 406
Score = 224 bits (570), Expect = 3e-58
Identities = 130/370 (35%), Positives = 217/370 (58%), Gaps = 20/370 (5%)
Query: 95 YAMKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAIC 154
YA F+KPS IQ++A+ I+ +++IAQ+QSGTGKTA F++++L +++ ++ +TQA+
Sbjct: 48 YAYGFEKPSAIQQRAILPCIKG--YDVIAQAQSGTGKTATFAISILQQIELDLKATQALV 105
Query: 155 LSPARELARQTLEVIQEMGKFTKTSSQLVVPDS-----FERNKPITANIVVGTPGTVLDL 209
L+P RELA+Q +V+ +G + S + + ++ + +I+VGTPG V D+
Sbjct: 106 LAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDM 165
Query: 210 IRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYA 269
+ R+ L+ IK+FVLDEAD ML + G DQ + + L Q+VL SAT V +
Sbjct: 166 LNRRYLSPKYIKMFVLDEADEMLSR-GFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVT 224
Query: 270 KKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQT 329
KK + + + ++K E+ + I+Q +++ + EE K L +LY LTI ++IF+ T++
Sbjct: 225 KKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRK 284
Query: 330 ANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMV 389
+ L K+ VS +HGD+ ++RD ++ +FR G S+VLITT++LARGID+ VS+V
Sbjct: 285 VDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLV 344
Query: 390 VNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFI--HDKKSFEVLSAIQKYFGDIE 447
+NYDLPT + Y+H VAI+ + DK++ + F +
Sbjct: 345 INYDLPT------NRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIET----FYNTS 394
Query: 448 ITKVPTDDLD 457
I ++P + D
Sbjct: 395 IEEMPLNVAD 404
>SPAC1006.07 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 392
Score = 223 bits (567), Expect = 6e-58
Identities = 125/367 (34%), Positives = 214/367 (58%), Gaps = 15/367 (4%)
Query: 95 YAMKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAIC 154
YA F++PS IQ++A+ ++ + +++AQ+QSGTGKTA FS+++L ++D ++ QA+
Sbjct: 35 YAYGFERPSAIQQRAIMPILGE--RDVLAQAQSGTGKTATFSISVLQKIDTSLKQCQALI 92
Query: 155 LSPARELARQTLEVIQEMGKFTKTSSQLVVPDSFERNKPIT----ANIVVGTPGTVLDLI 210
L+P RELA+Q +V+ +G + + R+ ++VVGTPG V D+I
Sbjct: 93 LAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQAGVHVVVGTPGRVHDMI 152
Query: 211 RRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAK 270
+R+ L ++++FVLDEAD ML + G DQ + + LP T Q+VL SAT V +
Sbjct: 153 QRRALPTDAVQMFVLDEADEMLSR-GFKDQIYDIFQLLPPTAQVVLLSATMPQDVLEVTT 211
Query: 271 KIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQTA 330
K + + + ++K+E+ + IKQ ++ + EE K L +LY +T+ ++IF T++
Sbjct: 212 KFMRDPIRILVKKDELTLEGIKQFYVAVEKEEWKLDTLCDLYETVTVTQAVIFCNTRRKV 271
Query: 331 NLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVV 390
+ L +L + VS +HGD+ RD L+ +FR G S++LITT++LARGID+ VS+V+
Sbjct: 272 DWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILITTDLLARGIDVQQVSLVI 331
Query: 391 NYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYFGDIEITK 450
NYDLP A+ Y+H V+I+F+ ++ I++++ + I +
Sbjct: 332 NYDLP------ANRENYIHRIGRGGRFGRKGVSINFV-TNDDVRMMREIEQFY-NTHIEE 383
Query: 451 VPTDDLD 457
+P + D
Sbjct: 384 MPMNIAD 390
>At3g19760 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 408
Score = 220 bits (561), Expect = 3e-57
Identities = 129/367 (35%), Positives = 209/367 (56%), Gaps = 15/367 (4%)
Query: 95 YAMKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAIC 154
Y F+KPS IQ++A+ +++ ++IAQ+QSGTGKT+ +L++ VD + QA+
Sbjct: 51 YEYGFEKPSAIQQRAVMPILQG--RDVIAQAQSGTGKTSMIALSVCQVVDTSSREVQALI 108
Query: 155 LSPARELARQTLEVIQEMGKFTKTSSQLVVPDSFE----RNKPITANIVVGTPGTVLDLI 210
LSP RELA QT + IQ +G + + + R ++V GTPG V D+I
Sbjct: 109 LSPTRELATQTEKTIQAIGLHANIQAHACIGGNSVGEDIRKLEHGVHVVSGTPGRVCDMI 168
Query: 211 RRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAK 270
+R+ L +IK+ +LDE+D ML + G DQ V ++LP Q+ L SAT + +
Sbjct: 169 KRRSLRTRAIKLLILDESDEMLSR-GFKDQIYDVYRYLPPDLQVCLVSATLPHEILEMTS 227
Query: 271 KIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQTA 330
K + V + ++++E+ + IKQ F+ + EE K+ L +LY LTI ++IF TK+
Sbjct: 228 KFMTEPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKV 287
Query: 331 NLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVV 390
+ L K++ VS +HGD+ ++RD ++++FR G S+VLITT+V ARGID+ VS+V+
Sbjct: 288 DYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVLITTDVWARGIDVQQVSLVI 347
Query: 391 NYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYFGDIEITK 450
NYDLP + Y+H VAI+F+ ++L I++Y+ +I +
Sbjct: 348 NYDLPN------NRELYIHRIGRSGRFGRKGVAINFV-KSDDIKILRDIEQYY-STQIDE 399
Query: 451 VPTDDLD 457
+P + D
Sbjct: 400 MPMNVAD 406
>At3g13920 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 412
Score = 219 bits (559), Expect = 5e-57
Identities = 130/367 (35%), Positives = 211/367 (57%), Gaps = 15/367 (4%)
Query: 95 YAMKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAIC 154
YA F+KPS IQ++ + + ++I Q+QSGTGKTA F +L ++D ++ QA+
Sbjct: 55 YAYGFEKPSAIQQRGIVPFCKGL--DVIQQAQSGTGKTATFCSGVLQQLDFSLIQCQALV 112
Query: 155 LSPARELARQTLEVIQEMGKFTKTSSQLVVPDSFERNKP----ITANIVVGTPGTVLDLI 210
L+P RELA+Q +V++ +G + V + R ++VVGTPG V D++
Sbjct: 113 LAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDML 172
Query: 211 RRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAK 270
+R+ L +IK+FVLDEAD ML + G DQ + + LP Q+ +FSAT + +
Sbjct: 173 KRQSLRADNIKMFVLDEADEMLSR-GFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR 231
Query: 271 KIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQTA 330
K + V + ++++E+ + IKQ +++ + EE K L +LY L I S+IFV T++
Sbjct: 232 KFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKV 291
Query: 331 NLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVV 390
+ L K++ H VS HGD+ RD ++ +FR G S+VLITT++LARGID+ VS+V+
Sbjct: 292 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 351
Query: 391 NYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYFGDIEITK 450
N+DLPT P Y+H VAI+F+ + +L IQK++ ++ + +
Sbjct: 352 NFDLPT------QPENYLHRIGRSGRFGRKGVAINFV-TRDDERMLFDIQKFY-NVVVEE 403
Query: 451 VPTDDLD 457
+P++ D
Sbjct: 404 LPSNVAD 410
>CE01341 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 402
Score = 219 bits (557), Expect = 9e-57
Identities = 126/367 (34%), Positives = 210/367 (56%), Gaps = 15/367 (4%)
Query: 95 YAMKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAIC 154
Y F+KPS IQ++A+ ++IAQ+QSGTGKTA FS+++L R+D QA+
Sbjct: 45 YGFGFEKPSAIQKRAIVPCTTGK--DVIAQAQSGTGKTATFSVSILQRIDHEDPHVQALV 102
Query: 155 LSPARELARQTLEVIQEMGKFTKTSSQLVVPDSF----ERNKPITANIVVGTPGTVLDLI 210
++P RELA+Q +V+ +G++ + + + +R ++VVGTPG V D+I
Sbjct: 103 MAPTRELAQQIQKVMSALGEYLNVNILPCIGGTSVRDDQRKLEAGIHVVVGTPGRVGDMI 162
Query: 211 RRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAK 270
R L+ IK+FVLDEAD ML + G DQ V + +P+ Q+VL SAT V
Sbjct: 163 NRNALDTSRIKMFVLDEADEMLSR-GFKDQIYEVFRSMPQDVQVVLLSATMPSEVLDVTN 221
Query: 271 KIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQTA 330
+ + + + ++K+E+ + I+Q +++ +E K+ L +LY ++ + ++IF T++
Sbjct: 222 RFMRNPIRILVKKDELTLEGIRQFYINVQKDEWKFDCLCDLYNVVNVTQAVIFCNTRRKV 281
Query: 331 NLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVV 390
+ L K+ + VS LHGD+ +RD ++ +FR G S+VLITT++LARGID+ VS+V+
Sbjct: 282 DTLTEKMTENQFTVSCLHGDMDQAERDTIMREFRSGSSRVLITTDILARGIDVQQVSLVI 341
Query: 391 NYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYFGDIEITK 450
NYDLP ++ Y+H VAI+F+ + + + L I+ Y+ +I +
Sbjct: 342 NYDLP------SNRENYIHRIGRSGRFGRKGVAINFVTENDARQ-LKEIESYY-TTQIEE 393
Query: 451 VPTDDLD 457
+P D
Sbjct: 394 MPESIAD 400
>CE25531 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 508
Score = 218 bits (555), Expect = 2e-56
Identities = 117/299 (39%), Positives = 186/299 (62%), Gaps = 7/299 (2%)
Query: 95 YAMKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAIC 154
YA F+KPS IQ++A+P +++ ++IAQ+QSGTGKTA FS+++L +D V TQA+
Sbjct: 42 YAYGFEKPSAIQQRAIPAILK--ARDVIAQAQSGTGKTATFSISVLQSLDTQVRETQALI 99
Query: 155 LSPARELARQTLEVIQEMGKFTKTSSQLVVPDSFE----RNKPITANIVVGTPGTVLDLI 210
LSP RELA Q +V+ +G + + + R ++V GTPG V D+I
Sbjct: 100 LSPTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMI 159
Query: 211 RRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAK 270
RR+ L +IK+ VLDEAD ML+K G +Q + ++LP Q+VL SAT + +
Sbjct: 160 RRRNLRTRAIKLLVLDEADEMLNK-GFKEQLYDIYRYLPPGAQVVLLSATLPHEILEMTS 218
Query: 271 KIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQTA 330
K + + + ++++E+ + IKQ F+ D EE K+ L +LY LTI +++F T++
Sbjct: 219 KFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLIDLYDTLTITQAVLFCNTRRKV 278
Query: 331 NLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMV 389
+ L K+K+ VS +HGD++ +DRD ++ +FR G ++VLI+T+V ARG+D+P VS+V
Sbjct: 279 DWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTDVWARGLDVPQVSLV 337
>SPAC1F5.10 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 394
Score = 217 bits (553), Expect = 3e-56
Identities = 121/356 (33%), Positives = 203/356 (56%), Gaps = 14/356 (3%)
Query: 95 YAMKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAIC 154
YA ++ PS +Q +A+ + + ++IAQ+QSGTGKTA FS+ +L +D +V TQA+
Sbjct: 37 YAYGYETPSAVQSRAIIQICKG--RDVIAQAQSGTGKTATFSIGILQSIDLSVRDTQALI 94
Query: 155 LSPARELARQTLEVIQEMGKFTKTSSQLVVPDSFERNK----PITANIVVGTPGTVLDLI 210
LSP RELA Q V+ +G + + N ++V GTPG V D+I
Sbjct: 95 LSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYGQHVVSGTPGRVTDMI 154
Query: 211 RRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAK 270
RR+ L ++K+ +LDEAD +L+ QG +Q + ++LP Q+V+ SAT V +
Sbjct: 155 RRRNLRTRNVKMLILDEADELLN-QGFKEQIYDIYRYLPPGTQVVVVSATLPQDVLEMTN 213
Query: 271 KIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQTA 330
K V + ++++E+ + +KQ F+ + EE K+ L +LY LTI ++IF +++
Sbjct: 214 KFTTNPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNSRRKV 273
Query: 331 NLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVV 390
+ L K+++ V+ +HG++ ++RD ++ DFR+G S+VLI T++ ARGID+ VS+V+
Sbjct: 274 DWLTEKMREANFTVTSMHGEMPQKERDAIMQDFRQGNSRVLICTDIWARGIDVQQVSLVI 333
Query: 391 NYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYFGDI 446
NYDLP A+ Y+H VAI+F+ + +L I++Y+ +
Sbjct: 334 NYDLP------ANRENYIHRIGRSGRFGRKGVAINFV-TNEDVRILRDIEQYYSTV 382
>ECU02g1520 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 425
Score = 216 bits (550), Expect = 6e-56
Identities = 131/347 (37%), Positives = 198/347 (56%), Gaps = 17/347 (4%)
Query: 95 YAMKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAIC 154
Y F+KPS IQ+ A+P ++R HN++ QS+SGTGKT A++ +L TQ +
Sbjct: 67 YNQGFEKPSLIQKSAIPHILRG--HNVVVQSKSGTGKTIAYTCGVLGNTKIG-ERTQVMV 123
Query: 155 LSPARELARQTLEVIQ----EMGKFTKTSSQLVVPDSFERNKPITANIVVGTPGTVLDLI 210
++P REL+ Q EVI +G ++ + + DS I +VVG+PGT+L L+
Sbjct: 124 VTPTRELSTQVTEVISGLAGPLGIKVFSALKNKITDS------IGEEVVVGSPGTILKLM 177
Query: 211 RRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAK 270
LN +K+ VLDEAD +LDK +G Q R+ K + Q++ FSATF + V+Q +
Sbjct: 178 ELGKLNYKGVKMIVLDEADILLDKDMMGTQTFRILKLI-SGAQMIFFSATFSEQVKQTIE 236
Query: 271 KIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQTA 330
P AV + ++N IK +++ + E +K L LY L+I IIFV TK T
Sbjct: 237 FYAPDAVKMYEERNG-KPDEIKLFYIEAEGE-NKRRALKSLYEYLSISQMIIFVSTKATV 294
Query: 331 NLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVV 390
N L KL+ + H VS LHGDL+ ++R++ + DFR +SK+L+TT+V +RG+DIP V+++V
Sbjct: 295 NYLRKKLEDDLHSVSCLHGDLEIEEREKAVGDFRSSKSKILLTTDVFSRGMDIPQVNLIV 354
Query: 391 NYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLS 437
NYDLP + G A TY+H + F+ D++ LS
Sbjct: 355 NYDLP-IYRGVASTQTYIHRIGRSGRFGRTGFVVDFVRDEELEAYLS 400
>At1g51380 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 392
Score = 216 bits (550), Expect = 6e-56
Identities = 130/364 (35%), Positives = 210/364 (56%), Gaps = 15/364 (4%)
Query: 95 YAMKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAIC 154
Y ++KPS+IQ++AL +++ ++IAQ+QSGTGKT+ ++++ V+ + Q +
Sbjct: 38 YDYGYKKPSEIQQRALVPILKG--RDVIAQAQSGTGKTSMIAISVCQIVNISSRKVQVLV 95
Query: 155 LSPARELARQTLEVIQEMGKFTKTSSQLVVPDSF--ERNKPITANI--VVGTPGTVLDLI 210
LSP+RELA QT + IQ +G T + + E K + + V GTPG V D+I
Sbjct: 96 LSPSRELASQTEKTIQAIGAHTNIQAHACIGGKSIGEDIKKLERGVHAVSGTPGRVYDMI 155
Query: 211 RRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAK 270
+R L ++K+ VLDE+D ML K GL DQ V + LP Q+ L SAT + + +
Sbjct: 156 KRGSLQTKAVKLLVLDESDEMLSK-GLKDQIYDVYRALPHDIQVCLISATLPQEILEMTE 214
Query: 271 KIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQTA 330
K + V + ++ +E+ + IKQ ++D D EE K+ L +LYG LTI +IIF T+Q
Sbjct: 215 KFMTDPVRILVKPDELTLEGIKQYYVDVDKEEWKFDTLCDLYGRLTINQAIIFCNTRQKV 274
Query: 331 NLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVV 390
+ L K++ VS +HGD + ++RD +++ FR +S+VLI ++V ARGID+ +VS V+
Sbjct: 275 DWLTEKMRSSNFIVSSMHGDKRQKERDDIMNQFRSFKSRVLIASDVWARGIDVQTVSHVI 334
Query: 391 NYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYFGDIEITK 450
NYD+P +P Y+H VAI+F+ + L I++++G +I +
Sbjct: 335 NYDIPN------NPELYIHRIGRAGRFGREGVAINFV-KSSDMKDLKDIERHYG-TKIRE 386
Query: 451 VPTD 454
+P D
Sbjct: 387 MPAD 390
>At1g54270 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 412
Score = 216 bits (549), Expect = 8e-56
Identities = 130/367 (35%), Positives = 208/367 (56%), Gaps = 15/367 (4%)
Query: 95 YAMKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAIC 154
YA F+KPS IQ++ + + ++I Q+QSGTGKTA F +L ++D + QA+
Sbjct: 55 YAYGFEKPSAIQQRGIVPFCKGL--DVIQQAQSGTGKTATFCSGVLQQLDYALLQCQALV 112
Query: 155 LSPARELARQTLEVIQEMGKFTKTSSQLVVPDSFERNKP----ITANIVVGTPGTVLDLI 210
L+P RELA+Q +V++ +G + V + R ++VVGTPG V D++
Sbjct: 113 LAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDML 172
Query: 211 RRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAK 270
RR+ L IK+FVLDEAD ML + G DQ + + LP Q+ +FSAT + +
Sbjct: 173 RRQSLRPDCIKMFVLDEADEMLSR-GFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR 231
Query: 271 KIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQTA 330
K + V + ++++E+ + IKQ +++ + E+ K L +LY L I S+IFV T++
Sbjct: 232 KFMSKPVRILVKRDELTLEGIKQFYVNVEKEDWKLETLCDLYETLAITQSVIFVNTRRKV 291
Query: 331 NLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVV 390
+ L K++ H VS HGD+ RD ++ +FR G S+VLITT++LARGID+ VS+V+
Sbjct: 292 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 351
Query: 391 NYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYFGDIEITK 450
N+DLPT P Y+H VAI+F+ +L IQK++ ++ + +
Sbjct: 352 NFDLPT------QPENYLHRIGRSGRFGRKGVAINFV-TLDDQRMLFDIQKFY-NVVVEE 403
Query: 451 VPTDDLD 457
+P++ D
Sbjct: 404 LPSNVAD 410
>YDL160c [A] KOG0326 ATP-dependent RNA helicase
Length = 506
Score = 185 bits (469), Expect = 1e-46
Identities = 119/358 (33%), Positives = 196/358 (54%), Gaps = 17/358 (4%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICLSPA 158
F+KPS IQE+A+P+ I +++A++++GTGKTAAF + L +V P +N QA+ + P
Sbjct: 66 FEKPSPIQEEAIPVAITG--RDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPT 123
Query: 159 RELARQTLEVIQEMGKFTKTSSQLVVPDSFERNKPI----TANIVVGTPGTVLDLIRRKM 214
RELA QT +V++ +GK S + + R+ + T +I+VGTPG VLDL RK+
Sbjct: 124 RELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKV 183
Query: 215 LNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAKKIIP 274
+L +F++DEAD ML + ++ FLP T Q +LFSATF V+++ K +
Sbjct: 184 ADLSDCSLFIMDEADKMLSRD-FKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLH 242
Query: 275 TAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQTANLLY 334
+ L + E+ + I Q + + E K L+ L+ L I +IIF + LL
Sbjct: 243 KPYEINLME-ELTLKGITQYYAFVE-ERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLA 300
Query: 335 AKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVNYDL 394
K+ G+ H ++ Q+R+++ +FR+G+ + L+ +++L RGIDI +V++V+N+D
Sbjct: 301 KKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDF 360
Query: 395 PTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYFGDIEITKVP 452
P TY+H +AI+ I+ F L I++ G EI +P
Sbjct: 361 P------KTAETYLHRIGRSGRFGHLGLAINLINWNDRFN-LYKIEQELG-TEIAAIP 410
>7297629 [A] KOG0326 ATP-dependent RNA helicase
Length = 458
Score = 168 bits (425), Expect = 2e-41
Identities = 111/361 (30%), Positives = 193/361 (52%), Gaps = 23/361 (6%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICLSPA 158
+++PS IQE A+P+ + +++A++++GTGKT A+ + +L ++DP + QA+ + P
Sbjct: 77 WERPSPIQEAAIPIALSGK--DVLARAKNGTGKTGAYCIPVLEQIDPTKDYIQALVMVPT 134
Query: 159 RELARQTLEVIQEMGKFTK-----TSSQLVVPDSFERNKPITANIVVGTPGTVLDLIRRK 213
RELA QT ++ E+ K T+ ++ D R +++ TPG +LDL+ +K
Sbjct: 135 RELALQTSQICIELAKHLDIRVMVTTGGTILKDDILRIYQ-KVQLIIATPGRILDLMDKK 193
Query: 214 MLNLGSIKVFVLDEADNML--DKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAKK 271
+ ++ ++ VLDEAD +L D QG+ D I LPK Q++LFSATF V+ + +K
Sbjct: 194 VADMSHCRILVLDEADKLLSLDFQGMLDHVILK---LPKDPQILLFSATFPLTVKNFMEK 250
Query: 272 IIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQTAN 331
+ + L + E+ + + Q + E K L+ L+ L I SIIF + Q
Sbjct: 251 HLREPYEINLME-ELTLKGVTQYYAFVQ-ERQKVHCLNTLFSKLQINQSIIFCNSTQRVE 308
Query: 332 LLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVN 391
LL K+ + G+ +H + R+R+ DFR+G + L+ +++ RGID+ +V++V+N
Sbjct: 309 LLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVCSDLFTRGIDVQAVNVVIN 368
Query: 392 YDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYFGDIEITKV 451
+D P + TY+H +AI+ I + F+ L I+K G EI +
Sbjct: 369 FDFPRM------AETYLHRIGRSGRFGHLGIAINLITYEDRFD-LHRIEKELG-TEIKPI 420
Query: 452 P 452
P
Sbjct: 421 P 421
>At2g45810 [A] KOG0326 ATP-dependent RNA helicase
Length = 528
Score = 167 bits (423), Expect = 3e-41
Identities = 106/365 (29%), Positives = 191/365 (52%), Gaps = 21/365 (5%)
Query: 95 YAMKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAIC 154
Y F+KPS IQE+++P+ + +++A++++GTGKT AF + L ++DP N QA+
Sbjct: 170 YEKGFEKPSPIQEESIPIALTGS--DILARAKNGTGKTGAFCIPTLEKIDPENNVIQAVI 227
Query: 155 LSPARELARQTLEVIQEMGKFTK------TSSQLVVPDSFERNKPITANIVVGTPGTVLD 208
L P RELA QT +V +E+ K+ K T + D +P+ +++VGTPG +LD
Sbjct: 228 LVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLYQPV--HLLVGTPGRILD 285
Query: 209 LIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQY 268
L ++ + L + V+DEAD +L + + +FLP++ Q+++FSATF V+ +
Sbjct: 286 LAKKGVCVLKDCAMLVMDEADKLLSVE-FQPSIEELIQFLPESRQILMFSATFPVTVKSF 344
Query: 269 AKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQ 328
+ + + L +++ + + Q + + E K L+ L+ L I SIIF +
Sbjct: 345 KDRYLKKPYIINLM-DQLTLMGVTQYYAFVE-ERQKVHCLNTLFSKLQINQSIIFCNSVN 402
Query: 329 TANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSM 388
LL K+ + G+ +H + R+R+ DFR G + L+ T++ RGIDI +V++
Sbjct: 403 RVELLAKKITELGYSCFYIHAKMVQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNV 462
Query: 389 VVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYFGDIEI 448
V+N+D P +Y+H +A++ + + F++ Q+ EI
Sbjct: 463 VINFDFP------RTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTEQEL--GTEI 514
Query: 449 TKVPT 453
+P+
Sbjct: 515 KPIPS 519
>At3g61240 [A] KOG0326 ATP-dependent RNA helicase
Length = 498
Score = 165 bits (418), Expect = 1e-40
Identities = 105/366 (28%), Positives = 192/366 (51%), Gaps = 21/366 (5%)
Query: 95 YAMKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAIC 154
Y F+KPS IQE+++P+ + +++A++++GTGKT AF + +L ++DPN N QA+
Sbjct: 140 YEKGFEKPSPIQEESIPIALTGS--DILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMI 197
Query: 155 LSPARELARQTLEVIQEMGKFTK------TSSQLVVPDSFERNKPITANIVVGTPGTVLD 208
L P RELA QT +V +E+ K+ T + D ++P+ +++VGTPG +LD
Sbjct: 198 LVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPV--HLLVGTPGRILD 255
Query: 209 LIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQY 268
L ++ + L + V+DEAD +L + + +FLP+ Q ++FSATF V+ +
Sbjct: 256 LTKKGVCVLKDCAMLVMDEADKLLSAE-FQPSLEELIQFLPQNRQFLMFSATFPVTVKAF 314
Query: 269 AKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQ 328
+ + + L +++ + + Q + + E K L+ L+ L I SIIF +
Sbjct: 315 KDRHLRKPYVINLM-DQLTLMGVTQYYAFVE-ERQKVHCLNTLFSKLQINQSIIFCNSVN 372
Query: 329 TANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSM 388
LL K+ + G+ +H + R+R+ +FR G + L+ T++ RGIDI +V++
Sbjct: 373 RVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRGIDIQAVNV 432
Query: 389 VVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYFGDIEI 448
V+N+D P +Y+H +A++ + + F++ Q+ EI
Sbjct: 433 VINFDFP------RTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTEQEL--GTEI 484
Query: 449 TKVPTD 454
+P++
Sbjct: 485 KPIPSN 490
>CE00839 [A] KOG0326 ATP-dependent RNA helicase
Length = 430
Score = 165 bits (417), Expect = 2e-40
Identities = 103/335 (30%), Positives = 183/335 (53%), Gaps = 19/335 (5%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICLSPA 158
++KPS IQE ++ + + +++A++++GTGKT A+ + ++ ++ P + + QA+ + P
Sbjct: 63 WEKPSPIQEASIGVALTG--QDILARAKNGTGKTGAYCIPVIEKIQPALKAIQAMVIVPT 120
Query: 159 RELARQTLEVIQEMGKFTKTSSQLVVPDSFERNKPI----TANIVVGTPGTVLDLIRRKM 214
RELA QT ++ E+ K + + + R+ + T ++V+ TPG +LDL+ + +
Sbjct: 121 RELALQTSQICVELSKHIQLKVMVTTGGTDLRDDIMRLNGTVHLVIATPGRILDLMEKGV 180
Query: 215 LNLGSIKVFVLDEADNML--DKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAKKI 272
+ K VLDEAD +L D QG+ D+ I FLPK Q++L+SATF + V + +K
Sbjct: 181 AKMEHCKTLVLDEADKLLSQDFQGILDRLIN---FLPKERQVMLYSATFPNTVTSFMQKH 237
Query: 273 IPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQTANL 332
+ + L + E+ + + Q + E+ K L+ L+ L I SIIF + Q L
Sbjct: 238 MHKPYEINLME-ELTLLGVTQYYAFVQ-EKQKVHCLNTLFRKLQINQSIIFCNSTQRVEL 295
Query: 333 LYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVNY 392
L K+ + G+ +H + R+R+ DFR+G + L+ +++L RGIDI +V++V+N+
Sbjct: 296 LAKKITEIGYSCYYIHSKMAQNHRNRVFHDFRQGNCRNLVCSDLLTRGIDIQAVNVVINF 355
Query: 393 DLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFI 427
D P + TY+H VAI+ I
Sbjct: 356 DFP------RNAETYLHRIGRSGRFGHLGVAINLI 384
>SPBC776.09 [A] KOG0326 ATP-dependent RNA helicase
Length = 485
Score = 164 bits (414), Expect = 3e-40
Identities = 113/358 (31%), Positives = 183/358 (50%), Gaps = 17/358 (4%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICLSPA 158
F++PS IQE+++P+ + +++A++++GTGKTAAF + L +VD + Q + L P
Sbjct: 64 FERPSPIQEESIPIALSG--RDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPT 121
Query: 159 RELARQTLEVIQEMGKFTKTSSQLVVPDSFERNKPI----TANIVVGTPGTVLDLIRRKM 214
RELA QT +V + +GK + + R+ I T +IVVGTPG VLDL + +
Sbjct: 122 RELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLDLAGKGV 181
Query: 215 LNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAKKIIP 274
+ FV+DEAD +L + ++ + PK Q+ L+SATF V+ + K +
Sbjct: 182 ADFSECTTFVMDEADKLLSPE-FTPIIEQLLSYFPKNRQISLYSATFPLIVKNFMDKHLN 240
Query: 275 TAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQTANLLY 334
+ L +E+ + + Q + D E K L+ L+ L I SIIF + LL
Sbjct: 241 KPYEINLM-DELTLRGVTQYYAFVD-ESQKVHCLNTLFSKLQINQSIIFCNSTNRVELLA 298
Query: 335 AKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVNYDL 394
K+ + G+ H + R+R+ +FR G + L+ +++L RGIDI +V++V+N+D
Sbjct: 299 KKITELGYSCFYSHAKMLQSHRNRVFHNFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDF 358
Query: 395 PTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYFGDIEITKVP 452
P + TY+H +AISFI F L I+ G EI +P
Sbjct: 359 P------KNAETYLHRIGRSGRFGHRGLAISFISWADRFN-LYRIENELG-TEIQPIP 408
>Hs4758140 [A] KOG0326 ATP-dependent RNA helicase
Length = 472
Score = 163 bits (412), Expect = 6e-40
Identities = 111/369 (30%), Positives = 198/369 (53%), Gaps = 26/369 (7%)
Query: 95 YAMKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAIC 154
+ M ++KPS IQE+++P+ + +++A++++GTGK+ A+ + +L R+D ++ QA+
Sbjct: 101 FEMGWEKPSPIQEESIPIALSG--RDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMV 158
Query: 155 LSPARELARQT----LEVIQEMG--KFTKTSSQLVVPDSFERNKPITANIVVGTPGTVLD 208
+ P RELA Q ++V + MG K T+ + D R T ++V+ TPG +LD
Sbjct: 159 IVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDD-TVHVVIATPGRILD 217
Query: 209 LIRRKMLNLGSIKVFVLDEADNMLDK---QGLGDQCIRVKKFLPKTCQLVLFSATFDDGV 265
LI++ + + +++ VLDEAD +L + Q + D + LPK Q++L+SATF V
Sbjct: 218 LIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILT----LPKNRQILLYSATFPLSV 273
Query: 266 RQYAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVK 325
+++ + + L + E+ + + Q + E K L+ L+ L I SIIF
Sbjct: 274 QKFMNSHLQKPYEINLME-ELTLKGVTQYYAYV-TERQKVHCLNTLFSRLQINQSIIFCN 331
Query: 326 TKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPS 385
+ Q LL K+ + G+ +H ++ + R+R+ DFR G + L+ T++ RGIDI +
Sbjct: 332 SSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQA 391
Query: 386 VSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYFGD 445
V++V+N+D P L TY+H +AI+ I F L +I++ G
Sbjct: 392 VNVVINFDFPKL------AETYLHRIGRSGRFGHLGLAINLITYDDRFN-LKSIEEQLG- 443
Query: 446 IEITKVPTD 454
EI +P++
Sbjct: 444 TEIKPIPSN 452
>ECU09g1200 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 425
Score = 162 bits (410), Expect = 1e-39
Identities = 113/382 (29%), Positives = 204/382 (52%), Gaps = 36/382 (9%)
Query: 95 YAMKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAIC 154
Y++ F+ PS IQ+ A+ +I ++ AQ+QSGTGKT AF++ L D + + TQ +
Sbjct: 54 YSIGFETPSFIQKAAIQPIIDG--RDIRAQAQSGTGKTGAFAVAALQICDMSQDVTQILV 111
Query: 155 LSPARELARQTLEVIQEMGKFTKTSSQLVVPDSFERNKPITAN---------IVVGTPGT 205
L+ RE+A Q +++G F L+ S PI A+ IVVGTPG
Sbjct: 112 LASTREIAAQNAARFEDLGCFMGARVALLSGGS-----PIAADKVALEKKPHIVVGTPGR 166
Query: 206 VLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKT--CQLVLFSATFDD 263
V +I L++ +IK+FV+DEAD ML K G +Q + + + Q+ +FSAT+D+
Sbjct: 167 VEHMININELSMDNIKLFVIDEADEML-KAGFQEQVKSIFRRITNKDEVQIAMFSATYDE 225
Query: 264 GVRQYAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEH-----------KYTILSELY 312
+ +++I+ V ++L+ N+ + I+Q F+D E K L +++
Sbjct: 226 EELRVSEEILINPVIIDLRYNDQTLKGIRQYFIDLRKEPPFRKGREDYLLPKLVTLYDIF 285
Query: 313 GLLTIGSSIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLI 372
+G SI+F+ +K+ A ++Y L + + ++ +L +R+R ++ FR G + LI
Sbjct: 286 RKQRLGQSIVFINSKEDARIVYDWLIRHEWECELISAELTQAERERTLNRFRGGTGRCLI 345
Query: 373 TTNVLARGIDIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKS 432
++ +L+RGIDI ++S+V D+P+ STY+H +AI+ +++ +
Sbjct: 346 SSGLLSRGIDIQNLSVVFCLDVPSFER----KSTYIHRIGRSGRYGRKGIAINIVYEHE- 400
Query: 433 FEVLSAIQKYFGDIEITKVPTD 454
+ L AI++++ + I ++P D
Sbjct: 401 LKNLKAIERFY-NTTIKELPAD 421
>7296990 [A] KOG0329 ATP-dependent RNA helicase
Length = 424
Score = 162 bits (410), Expect = 1e-39
Identities = 107/365 (29%), Positives = 191/365 (52%), Gaps = 20/365 (5%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNST-QAICLSP 157
F+ PS++Q + +P + +++ Q++SG GKTA F L L +++P+ N+T + +
Sbjct: 61 FEHPSEVQHECIPQAVLGM--DILCQAKSGMGKTAVFVLATLQQLEPSDNNTCHVLVMCH 118
Query: 158 ARELARQTLEVIQEMGKFTKTSSQLV------VPDSFERNKPITANIVVGTPGTVLDLIR 211
RELA Q + + K+ T V + E K T +IVVGTPG +L LIR
Sbjct: 119 TRELAFQISKEYERFSKYMPTVKVAVFFGGMAIQKDEETLKSGTPHIVVGTPGRILALIR 178
Query: 212 RKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAKK 271
K LNL +K FVLDE D ML++ + + + P Q+++FSAT +R KK
Sbjct: 179 NKKLNLKLLKHFVLDECDKMLEQLDMRRDVQEIFRSTPHGKQVMMFSATLSKDIRPVCKK 238
Query: 272 IIPTAVSLEL-QKNEVNVSAIKQLFMDC-DNEEHKYTILSELYGLLTIGSSIIFVKTKQT 329
+ + + + + ++ + ++Q +++ +NE++K L EL +L +IFVK+ Q
Sbjct: 239 FMQDPMEVYVDDEAKLTLHGLQQHYVNLKENEKNKK--LFELLDVLEFNQVVIFVKSVQR 296
Query: 330 ANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMV 389
L L ++ +H + ++R F++ + ++L+ TN+ RG+DI V++V
Sbjct: 297 CVALSQLLTEQNFPAIGIHRGMTQEERLNRYQQFKDFQKRILVATNLFGRGMDIERVNIV 356
Query: 390 VNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYFGDIEIT 449
NYD+P D TY+H +AI+F+ D+ ++L+ +Q F D+ I+
Sbjct: 357 FNYDMP------EDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNEVQDRF-DVNIS 409
Query: 450 KVPTD 454
++P +
Sbjct: 410 ELPEE 414
>At4g00660 [A] KOG0326 ATP-dependent RNA helicase
Length = 499
Score = 156 bits (395), Expect = 5e-38
Identities = 106/364 (29%), Positives = 188/364 (51%), Gaps = 27/364 (7%)
Query: 95 YAMKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAIC 154
Y F++PS IQE+++P+ + +++A++++GTGKTAAF + +L ++D + N Q C
Sbjct: 147 YEKGFERPSPIQEESIPIALTG--RDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQGNC 204
Query: 155 LSPARELARQTLEVIQEMGKFTK------TSSQLVVPDSFERNKPITANIVVGTPGTVLD 208
+ T +V +E+GK K T + D +P+ +++VGTPG +LD
Sbjct: 205 VLD------HTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPV--HLLVGTPGRILD 256
Query: 209 LIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQY 268
L ++ + L V V+DEAD +L ++ + FLP++ Q+++FSATF V+ +
Sbjct: 257 LTKKGVCVLKDCSVLVMDEADKLLSQE-FQPSVEHLISFLPESRQILMFSATFPVTVKDF 315
Query: 269 AKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQ 328
+ + + L +E+ + I Q + + E K L+ L+ L I SIIF +
Sbjct: 316 KDRFLTNPYVINLM-DELTLKGITQFYAFVE-ERQKIHCLNTLFSKLQINQSIIFCNSVN 373
Query: 329 TANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSM 388
LL K+ + G+ +H + R+R+ DFR G + L+ T++ RGIDI +V++
Sbjct: 374 RVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNV 433
Query: 389 VVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYFGDIEI 448
V+N+D P + TY+H +A++ I + F L I++ G EI
Sbjct: 434 VINFDFP------KNAETYLHRVGRSGRFGHLGLAVNLITYEDRFN-LYRIEQELG-TEI 485
Query: 449 TKVP 452
++P
Sbjct: 486 KQIP 489
>YDL084w [A] KOG0329 ATP-dependent RNA helicase
Length = 446
Score = 155 bits (391), Expect = 2e-37
Identities = 103/368 (27%), Positives = 185/368 (49%), Gaps = 19/368 (5%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICLSPA 158
F+ PS++Q+ +P I +++ Q++SG GKTA F L+ L ++DP + + A
Sbjct: 82 FEHPSEVQQHTIPQSIHGT--DVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVAVVVICNA 139
Query: 159 RELARQTLEVIQEMGKFTKTSSQLV----VPDSFE----RNKPITANIVVGTPGTVLDLI 210
RELA Q K+ V P S + +NK +IVV TPG + L+
Sbjct: 140 RELAYQIRNEYLRFSKYMPDVKTAVFYGGTPISKDAELLKNKDTAPHIVVATPGRLKALV 199
Query: 211 RRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAK 270
R K ++L +K FV+DE D +L++ + + + P+ Q+++FSAT +R +
Sbjct: 200 REKYIDLSHVKNFVIDECDKVLEELDMRRDVQEIFRATPRDKQVMMFSATLSQEIRPICR 259
Query: 271 KIIPTAVSLEL-QKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQT 329
+ + + + + + ++ + ++Q ++ + E K L++L L IIFVK+
Sbjct: 260 RFLQNPLEIFVDDEAKLTLHGLQQYYIKLE-EREKNRKLAQLLDDLEFNQVIIFVKSTTR 318
Query: 330 ANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMV 389
AN L L +HG ++ ++R F++ ++ ++T+V RGIDI +++
Sbjct: 319 ANELTKLLNASNFPAITVHGHMKQEERIARYKAFKDFEKRICVSTDVFGRGIDIERINLA 378
Query: 390 VNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYFGDIEIT 449
+NYDL +AD Y+H +AISF+ K+ EVL+ IQ+ F D++I
Sbjct: 379 INYDL----TNEAD--QYLHRVGRAGRFGTKGLAISFVSSKEDEEVLAKIQERF-DVKIA 431
Query: 450 KVPTDDLD 457
+ P + +D
Sbjct: 432 EFPEEGID 439
>Hs4758112 [A] KOG0329 ATP-dependent RNA helicase
Length = 428
Score = 154 bits (388), Expect = 4e-37
Identities = 101/367 (27%), Positives = 185/367 (49%), Gaps = 20/367 (5%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICLSPA 158
F+ PS++Q + +P I +++ Q++SG GKTA F L L +++P + +
Sbjct: 65 FEHPSEVQHECIPQAILGM--DVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHT 122
Query: 159 RELARQTLEVIQEMGKFTKTSSQLV------VPDSFERNKPITANIVVGTPGTVLDLIRR 212
RELA Q + + K+ V + E K +IVVGTPG +L L R
Sbjct: 123 RELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN 182
Query: 213 KMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAKKI 272
K LNL IK F+LDE D ML++ + + + P Q+++FSAT +R +K
Sbjct: 183 KSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKF 242
Query: 273 IPTAVSLEL-QKNEVNVSAIKQLFMDC-DNEEHKYTILSELYGLLTIGSSIIFVKTKQTA 330
+ + + + + ++ + ++Q ++ DNE+++ L +L +L +IFVK+ Q
Sbjct: 243 MQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRK--LFDLLDVLEFNQVVIFVKSVQRC 300
Query: 331 NLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVV 390
L L ++ +H + ++R F++ + ++L+ TN+ RG+DI V++
Sbjct: 301 IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF 360
Query: 391 NYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYFGDIEITK 450
NYD+P D TY+H +AI+F+ D+ ++L+ +Q F ++ I++
Sbjct: 361 NYDMP------EDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRF-EVNISE 413
Query: 451 VPTDDLD 457
+P D++D
Sbjct: 414 LP-DEID 419
>SPAC17G6.14c [A] KOG0329 ATP-dependent RNA helicase
Length = 434
Score = 151 bits (381), Expect = 2e-36
Identities = 102/368 (27%), Positives = 187/368 (50%), Gaps = 20/368 (5%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICLSPA 158
F+ PS++Q+ +P I +++ Q++SG GKTA F L+ L +++P + L
Sbjct: 71 FEHPSEVQQVCIPQSILGT--DVLCQAKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHT 128
Query: 159 RELARQTLEVIQEMGKFTKTSSQLV------VPDSFE--RNKPITANIVVGTPGTVLDLI 210
RELA Q K+ V + E ++K + +IVV TPG + L+
Sbjct: 129 RELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIVVATPGRLNALV 188
Query: 211 RRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAK 270
R K+L + S+K FVLDE D +L+ + V + P Q+++FSAT + +R K
Sbjct: 189 REKILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQKQVMMFSATLSNEIRPICK 248
Query: 271 KIIPTAVSLELQ-KNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQT 329
K + + + + + ++ + ++Q ++ + E+ K +++L L +IFVK+
Sbjct: 249 KFMQNPLEIYVDDETKLTLHGLQQHYVKLE-EKAKNRKINDLLDSLEFNQVVIFVKSVSR 307
Query: 330 ANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMV 389
AN L L++ +HG L ++R + F++ ++ + T+V RGIDI V++V
Sbjct: 308 ANELDRLLRECNFPSICIHGGLPQEERIKRYKAFKDFDKRICVATDVFGRGIDIERVNIV 367
Query: 390 VNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYFGDIEIT 449
+NYD+P P +Y+H +AI+F ++ ++L IQ+ F ++ IT
Sbjct: 368 INYDMPD------SPDSYLHRVGRAGRFGTKGLAITFSSSEEDSQILDKIQERF-EVNIT 420
Query: 450 KVPTDDLD 457
++P D++D
Sbjct: 421 ELP-DEID 427
>At5g11200 [A] KOG0329 ATP-dependent RNA helicase
Length = 427
Score = 150 bits (379), Expect = 4e-36
Identities = 103/361 (28%), Positives = 180/361 (49%), Gaps = 17/361 (4%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICLSPA 158
F+ PS++Q + +P I ++I Q++SG GKTA F L+ L +++P+ A+ L
Sbjct: 66 FEHPSEVQHECIPQAILGM--DVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHT 123
Query: 159 RELARQTLEVIQEMGKFTKTSSQLVVPD--SFERNKPITAN----IVVGTPGTVLDLIRR 212
RELA Q + + V + + +K + N IVVGTPG VL L R
Sbjct: 124 RELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALARE 183
Query: 213 KMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAKKI 272
K L+L +++ F+LDE D ML+ + + K P Q+++FSAT +R KK
Sbjct: 184 KDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKF 243
Query: 273 IPTAVSLEL-QKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQTAN 331
+ + + + + ++ + + Q ++ +E K L++L L +IFVK+ A
Sbjct: 244 MQDPMEIYVDDEAKLTLHGLVQHYIKL-SEMEKNRKLNDLLDALDFNQVVIFVKSVSRAA 302
Query: 332 LLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVN 391
L L + +H + ++R F+EG ++L+ T+++ RGIDI V++V+N
Sbjct: 303 ELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVIN 362
Query: 392 YDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYFGDIEITKV 451
YD+P TY+H +AI+F+ EVL+ +Q+ F +++I ++
Sbjct: 363 YDMPD------SADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQERF-EVDIKEL 415
Query: 452 P 452
P
Sbjct: 416 P 416
>At5g11170 [A] KOG0329 ATP-dependent RNA helicase
Length = 435
Score = 150 bits (379), Expect = 4e-36
Identities = 103/361 (28%), Positives = 180/361 (49%), Gaps = 17/361 (4%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICLSPA 158
F+ PS++Q + +P I ++I Q++SG GKTA F L+ L +++P+ A+ L
Sbjct: 66 FEHPSEVQHECIPQAILGM--DVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHT 123
Query: 159 RELARQTLEVIQEMGKFTKTSSQLVVPD--SFERNKPITAN----IVVGTPGTVLDLIRR 212
RELA Q + + V + + +K + N IVVGTPG VL L R
Sbjct: 124 RELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALARE 183
Query: 213 KMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAKKI 272
K L+L +++ F+LDE D ML+ + + K P Q+++FSAT +R KK
Sbjct: 184 KDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKF 243
Query: 273 IPTAVSLEL-QKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQTAN 331
+ + + + + ++ + + Q ++ +E K L++L L +IFVK+ A
Sbjct: 244 MQDPMEIYVDDEAKLTLHGLVQHYIKL-SEMEKTRKLNDLLDALDFNQVVIFVKSVSRAA 302
Query: 332 LLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVN 391
L L + +H + ++R F+EG ++L+ T+++ RGIDI V++V+N
Sbjct: 303 ELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVIN 362
Query: 392 YDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYFGDIEITKV 451
YD+P TY+H +AI+F+ EVL+ +Q+ F +++I ++
Sbjct: 363 YDMPD------SADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQERF-EVDIKEL 415
Query: 452 P 452
P
Sbjct: 416 P 416
>Hs21040371 [A] KOG0329 ATP-dependent RNA helicase
Length = 427
Score = 149 bits (377), Expect = 7e-36
Identities = 99/364 (27%), Positives = 182/364 (49%), Gaps = 19/364 (5%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICLSPA 158
F+ PS++Q + +P I +++ Q++SG GKTA F L L +++P + +
Sbjct: 64 FEHPSEVQHECIPQAILGM--DVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHT 121
Query: 159 RELARQTLEVIQEMGKF---TKTS---SQLVVPDSFERNKPITANIVVGTPGTVLDLIRR 212
RELA Q + + K+ K S L + E K ++VVGTPG +L L+R
Sbjct: 122 RELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVRN 181
Query: 213 KMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAKKI 272
+ +L ++K FVLDE D ML++ + + + P Q ++FSAT +R +K
Sbjct: 182 RSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKDIRPVCRKF 241
Query: 273 I--PTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQTA 330
+ P V ++ + ++ + ++Q ++ + E K L +L +L IIFVK+ Q
Sbjct: 242 MQDPMEVFVD-DETKLTLHGLQQYYVKLKDSE-KNRKLFDLLDVLEFNQVIIFVKSVQRC 299
Query: 331 NLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVV 390
L L ++ +H + ++R F++ + ++L+ TN+ RG+DI V++V
Sbjct: 300 MALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVF 359
Query: 391 NYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYFGDIEITK 450
NYD+P D TY+H +AI+F+ D+ ++L+ +Q F ++ + +
Sbjct: 360 NYDMP------EDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRF-EVNVAE 412
Query: 451 VPTD 454
+P +
Sbjct: 413 LPEE 416
>ECU09g1640 [A] KOG0326 ATP-dependent RNA helicase
Length = 489
Score = 149 bits (376), Expect = 9e-36
Identities = 99/347 (28%), Positives = 180/347 (51%), Gaps = 16/347 (4%)
Query: 102 PSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICLSPAREL 161
PS +Q ++P ++ N++ +S++GTGKTA++ + ML ++ + S Q I L P REL
Sbjct: 131 PSPVQVASIPHVLGGK--NLLVRSKNGTGKTASYIVPMLNMINSSELSIQGIILVPIREL 188
Query: 162 ARQTLEVIQEMGKFTKTSSQLVVPDSFERNKPITAN----IVVGTPGTVLDLIRRKMLNL 217
A Q ++ M + T S VV + ++ I + ++VGTPG ++DL+ +++ L
Sbjct: 189 ALQISRNVKRMSEGTGVISAPVVGGTSMQDDIIRVSNGVHVMVGTPGRIVDLVEKRVGTL 248
Query: 218 GSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAKKIIPTAV 277
+ V DEAD +LD G+ ++ LP+ Q++L+SATF V + ++ + +
Sbjct: 249 SKRVILVFDEADKLLDVT-FGETVTKLLDLLPREKQMLLYSATFPYFVTGFIRRYMKNPL 307
Query: 278 SLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQTANLLYAKL 337
+ L K E+ +KQ + E K L L L+I +IF + +T LL K+
Sbjct: 308 CINLMK-ELAPVGVKQFYTYVKPSE-KLLCLKSLLLRLSINQCVIFCNSIKTVELLAMKI 365
Query: 338 KKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVNYDLPTL 397
+ G +H + +DR+ + +F +G+ K+L+ T+++ RG+D P+ + V+N+D+
Sbjct: 366 TEMGLPSYFIHSKMAQEDRNIVFHNFLKGKCKILVATDLITRGVDAPNTNYVINFDI--- 422
Query: 398 PNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYFG 444
P +Y+H VAIS + ++ E+L I+ G
Sbjct: 423 ---SKSPESYLHRIGRAGRFGAPGVAISLVTTEEK-EMLMDIEAKLG 465
>CE03025 [A] KOG0329 ATP-dependent RNA helicase
Length = 425
Score = 149 bits (375), Expect = 1e-35
Identities = 97/361 (26%), Positives = 176/361 (47%), Gaps = 17/361 (4%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICLSPA 158
F+ PS++Q + +P I +++ Q++SG GKTA F +T L +++P +C+
Sbjct: 61 FEHPSEVQHECIPQAILGM--DVVCQAKSGMGKTAVFVITTLQQLEPVDGEVSVVCMCHT 118
Query: 159 RELARQTLEVIQEMGKFTKTSSQLV------VPDSFERNKPITANIVVGTPGTVLDLIRR 212
RELA Q + + K+ V + ER +IVVGTPG +L L R
Sbjct: 119 RELAFQISKEYERFSKYLPGVKVAVFFGGMAIKKDEERLANDCPHIVVGTPGRMLALARS 178
Query: 213 KMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAKKI 272
L L +K FVLDE D M+ + + K P+ Q+++FSAT +R K+
Sbjct: 179 GKLKLDKVKYFVLDECDKMIGDADMRRDVQEIVKMTPQQKQVMMFSATLPKELRTVCKRF 238
Query: 273 IPTAVSLEL-QKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQTAN 331
+ + + + + ++ + ++Q ++ E +L+ L L +IFVK +
Sbjct: 239 MQDPMEVYVDDEAKLTLHGLQQHYVKLKEAEKNRRLLN-LLDALEFNQVVIFVKAVKRCE 297
Query: 332 LLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVN 391
L+ L ++ +H + ++R F++ + ++L+ T++ RG+DI V++V N
Sbjct: 298 ALHQLLTEQNFPSIAIHRQMAQEERLSRYQAFKDFQKRILVATDLFGRGMDIERVNIVFN 357
Query: 392 YDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYFGDIEITKV 451
YD+P D +Y+H +AI+F+ D+ + L+++Q F DI IT++
Sbjct: 358 YDMP------EDSDSYLHRVARAGRFGTKGLAITFVSDENDAKTLNSVQDRF-DISITEL 410
Query: 452 P 452
P
Sbjct: 411 P 411
>At3g09720 [A] KOG0344 ATP-dependent RNA helicase
Length = 545
Score = 147 bits (370), Expect = 4e-35
Identities = 98/335 (29%), Positives = 167/335 (49%), Gaps = 15/335 (4%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVD-----PNVNSTQAI 153
F++P+ IQ +A+P+L+ A + +G+GKT AF ML ++ P+ + +A+
Sbjct: 161 FKEPTPIQRQAIPILLSG--RECFACAPTGSGKTFAFICPMLIKLKVLNCRPSTDGIRAV 218
Query: 154 CLSPARELARQTLEVIQEMGKFTKTSSQLVVPDSFERN--KPITANIVVGTPGTVLDLIR 211
LSPARELA QT +++ K + +L+ + + ++++ TP + I+
Sbjct: 219 ILSPARELAAQTAREGKKLIKGSNFHIRLMTKPLVKTADFSKLWCDVLISTPMRLKRAIK 278
Query: 212 RKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAKK 271
K ++L ++ VLDE+D + ++ L VK + LFSAT D V + A+
Sbjct: 279 AKKIDLSKVEYLVLDESDKLFEQSLLKQIDCVVKACSNPSIIRSLFSATLPDSVEELARS 338
Query: 272 IIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQTAN 331
I+ AV + + + +KQ + +EE K L + + +IFV++K+ A
Sbjct: 339 IMHDAVRVIIGRKNTASETVKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAK 398
Query: 332 LLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVN 391
LY +LK E + ++H DL +R+ +D FR G VLI T+V+ARG+D ++ V+N
Sbjct: 399 ELYDELKCENIRAGVIHSDLPPGERENAVDQFRAGEKWVLIATDVIARGMDFKGINCVIN 458
Query: 392 YDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISF 426
YD P S Y+H AI+F
Sbjct: 459 YDFPD------SASAYIHRIGRSGRAGRSGEAITF 487
>YHR065c [A] KOG0330 ATP-dependent RNA helicase
Length = 543
Score = 145 bits (367), Expect = 1e-34
Identities = 109/368 (29%), Positives = 173/368 (46%), Gaps = 21/368 (5%)
Query: 97 MKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICLS 156
+ + KP+ IQ KA+P + H++I +Q+G+GKTAAF++ +L R+ + A L+
Sbjct: 141 LNYSKPTPIQSKAIPPALEG--HDIIGLAQTGSGKTAAFAIPILNRLWHDQEPYYACILA 198
Query: 157 PARELARQTLEVIQEMGKFTKTSSQLVVPD----SFERNKPITANIVVGTPGTVLD-LIR 211
P RELA+Q E +G S +V R+ +I++ TPG ++D L
Sbjct: 199 PTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPGRLMDHLEN 258
Query: 212 RKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLV-LFSATFDDGVRQYAK 270
K +L +K V+DEAD +LD + G R+ K +P + LFSAT + + +
Sbjct: 259 TKGFSLRKLKFLVMDEADRLLDME-FGPVLDRILKIIPTQERTTYLFSATMTSKIDKLQR 317
Query: 271 KIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQTA 330
+ V + V + Q M K T L L + IIF +TK A
Sbjct: 318 ASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGL-KNTYLIYLLNEFIGKTMIIFTRTKANA 376
Query: 331 NLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVV 390
L + LHGDL R +D F+ G+ +L+ T+V ARG+DIPSV +VV
Sbjct: 377 ERLSGLCNLLEFSATALHGDLNQNQRMGSLDLFKAGKRSILVATDVAARGLDIPSVDIVV 436
Query: 391 NYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYFGDIEITK 450
NYD+P D +Y+H +IS + + E++ I++ G K
Sbjct: 437 NYDIP------VDSKSYIHRVGRTARAGRSGKSISLV-SQYDLELILRIEEVLG----KK 485
Query: 451 VPTDDLDE 458
+P + +D+
Sbjct: 486 LPKESVDK 493
>CE28031 [A] KOG0334 RNA helicase
Length = 747
Score = 145 bits (366), Expect = 1e-34
Identities = 121/365 (33%), Positives = 184/365 (50%), Gaps = 36/365 (9%)
Query: 98 KFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRV--DPNVNSTQ---A 152
++ KP+ IQ +A+P ++ ++I +++G+GKT AF L M + P + A
Sbjct: 323 EYSKPTSIQAQAIPSIMSG--RDVIGIAKTGSGKTLAFLLPMFRHILDQPELEEGDGPIA 380
Query: 153 ICLSPARELARQTLEVIQEMGKFTK--------TSSQLVVPDSFERNKPITANIVVGTPG 204
+ L+P RELA QT + E KF K T + + + K A IVV TPG
Sbjct: 381 VILAPTRELAMQTYK---EANKFAKPLGLKVACTYGGVGISEQIADLKR-GAEIVVCTPG 436
Query: 205 TVLDLIRR---KMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATF 261
++D++ K+ NL + VLDEAD M DK G Q ++V + Q VLFSATF
Sbjct: 437 RMIDVLAANSGKVTNLRRVTYLVLDEADRMFDK-GFEPQIMKVVNNIRPDKQTVLFSATF 495
Query: 262 DDGVRQYAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLL-TIGSS 320
+ A+K++ V + + V S I Q + C E K+ L EL G+ GSS
Sbjct: 496 PRHMEALARKVLDKPVEILVGGKSVVCSDITQNAVICA-EHQKFLKLLELLGMYYEEGSS 554
Query: 321 IIFVKTKQTANLLYAKLKKEGHQ-VSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLAR 379
I+FV ++ A+ + +L + G+ V+ LHG + DRD I DF+ G KVL+ T+V AR
Sbjct: 555 IVFVDKQEKADDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIADFKTGVIKVLVATSVAAR 614
Query: 380 GIDIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFI----HDKKSFEV 435
G+D+ ++ +VVNYD PN D YVH A +F+ +K + E+
Sbjct: 615 GLDVKNLILVVNYD---CPNHYED---YVHRVGRTGRAGRKGYAYTFVLPEHQEKMAGEI 668
Query: 436 LSAIQ 440
A +
Sbjct: 669 CRAFE 673
>CE27427 [A] KOG0334 RNA helicase
Length = 970
Score = 145 bits (366), Expect = 1e-34
Identities = 121/365 (33%), Positives = 184/365 (50%), Gaps = 36/365 (9%)
Query: 98 KFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRV--DPNVNSTQ---A 152
++ KP+ IQ +A+P ++ ++I +++G+GKT AF L M + P + A
Sbjct: 323 EYSKPTSIQAQAIPSIMSG--RDVIGIAKTGSGKTLAFLLPMFRHILDQPELEEGDGPIA 380
Query: 153 ICLSPARELARQTLEVIQEMGKFTK--------TSSQLVVPDSFERNKPITANIVVGTPG 204
+ L+P RELA QT + E KF K T + + + K A IVV TPG
Sbjct: 381 VILAPTRELAMQTYK---EANKFAKPLGLKVACTYGGVGISEQIADLKR-GAEIVVCTPG 436
Query: 205 TVLDLIRR---KMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATF 261
++D++ K+ NL + VLDEAD M DK G Q ++V + Q VLFSATF
Sbjct: 437 RMIDVLAANSGKVTNLRRVTYLVLDEADRMFDK-GFEPQIMKVVNNIRPDKQTVLFSATF 495
Query: 262 DDGVRQYAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLL-TIGSS 320
+ A+K++ V + + V S I Q + C E K+ L EL G+ GSS
Sbjct: 496 PRHMEALARKVLDKPVEILVGGKSVVCSDITQNAVICA-EHQKFLKLLELLGMYYEEGSS 554
Query: 321 IIFVKTKQTANLLYAKLKKEGHQ-VSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLAR 379
I+FV ++ A+ + +L + G+ V+ LHG + DRD I DF+ G KVL+ T+V AR
Sbjct: 555 IVFVDKQEKADDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIADFKTGVIKVLVATSVAAR 614
Query: 380 GIDIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFI----HDKKSFEV 435
G+D+ ++ +VVNYD PN D YVH A +F+ +K + E+
Sbjct: 615 GLDVKNLILVVNYD---CPNHYED---YVHRVGRTGRAGRKGYAYTFVLPEHQEKMAGEI 668
Query: 436 LSAIQ 440
A +
Sbjct: 669 CRAFE 673
>Hs7662318 [A] KOG0334 RNA helicase
Length = 1032
Score = 143 bits (360), Expect = 6e-34
Identities = 113/365 (30%), Positives = 184/365 (49%), Gaps = 39/365 (10%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQ-----AI 153
++KP+ IQ +A+P ++ ++I +++G+GKT AF L M + + + A+
Sbjct: 392 YEKPTPIQTQAIPAIMSG--RDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAV 449
Query: 154 CLSPARELARQTLEVIQEMGKFTKTSSQLVV--------PDSFERNKPITANIVVGTPGT 205
++P RELA L++ +E KF+KT VV + K A I+V TPG
Sbjct: 450 IMTPTRELA---LQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKR-GAEIIVCTPGR 505
Query: 206 VLDLIRR---KMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFD 262
++D++ ++ NL + VLDEAD M D G Q +R+ + Q V+FSATF
Sbjct: 506 MIDMLAANSGRVTNLRRVTYVVLDEADRMFD-MGFEPQVMRIVDNVRPDRQTVMFSATFP 564
Query: 263 DGVRQYAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYG-LLTIGSSI 321
+ A++I+ + +++ V S ++Q + + EE K+ L EL G GS I
Sbjct: 565 RAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIE-EEKKFLKLLELLGHYQESGSVI 623
Query: 322 IFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGI 381
IFV ++ A+ L L + + LHG + DRD +I+DF+ G K+L+ T+V ARG+
Sbjct: 624 IFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGL 683
Query: 382 DIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQK 441
D+ + +VVNY + PN D YVH A +FI + ++ +
Sbjct: 684 DVKHLILVVNY---SCPNHYED---YVHRAGRTGRAGNKGYAYTFITEDQA--------R 729
Query: 442 YFGDI 446
Y GDI
Sbjct: 730 YAGDI 734
>At1g77050 [A] KOG0337 ATP-dependent RNA helicase
Length = 513
Score = 143 bits (360), Expect = 6e-34
Identities = 114/384 (29%), Positives = 199/384 (51%), Gaps = 27/384 (7%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNV--NSTQAICLS 156
++ P+ IQ K +PL++ +++A +++G+GKTAAF + ML ++ +V +A+ LS
Sbjct: 48 YKVPTPIQRKTMPLILSGV--DVVAMARTGSGKTAAFLIPMLEKLKQHVPQGGVRALILS 105
Query: 157 PARELARQTLEVIQEMGKFTKTSSQLVVP-DSFERN-KPITA--NIVVGTPGTVLDLIRR 212
P R+LA QTL+ +E+GKFT L+V DS E + +T ++++ TPG ++ L+
Sbjct: 106 PTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELTKGPDVIIATPGRLMHLLSE 165
Query: 213 -KMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAKK 271
+ L +++ V DEAD++ G +Q ++ L + Q +LFSAT + ++AK
Sbjct: 166 VDDMTLRTVEYVVFDEADSLFG-MGFAEQLHQILTQLSENRQTLLFSATLPSALAEFAKA 224
Query: 272 II--PTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYG--LLTIGSSIIFVKTK 327
+ P V L+++ N+++ +K F+ EE KY+ L L + + ++IFV TK
Sbjct: 225 GLREPQLVRLDVE-NKISPD-LKLSFLTVRPEE-KYSALLYLVREHISSDQQTLIFVSTK 281
Query: 328 QTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVS 387
+ + K E + S+ +GD+ R + FR ++ +LI T++ ARGIDIP +
Sbjct: 282 HHVEFVNSLFKLENIEPSVCYGDMDQDARKIHVSRFRARKTMLLIVTDIAARGIDIPLLD 341
Query: 388 MVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYFGDIE 447
V+N+D P P +VH A SF+ + +L F
Sbjct: 342 NVINWDFP------PRPKIFVHRVGRAARAGRTGCAYSFVTPEDMPYMLDL--HLFLSKP 393
Query: 448 ITKVPTDD--LDEMETIVKKALKA 469
+ PT+D L ME ++ K +A
Sbjct: 394 VRPAPTEDEVLKNMEEVMTKTSQA 417
>SPCC10H11.01 [A] KOG0334 RNA helicase
Length = 1014
Score = 142 bits (359), Expect = 8e-34
Identities = 114/368 (30%), Positives = 186/368 (49%), Gaps = 37/368 (10%)
Query: 96 AMKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRV-DPNVNSTQ--- 151
++ ++KP+ IQ +A+P + ++I +++G+GKT AF L M + D T
Sbjct: 435 SLGYEKPTSIQAQAIPAITSG--RDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGP 492
Query: 152 -AICLSPARELARQTLEVIQEMGKFTKTSSQLV--------VPDSFERNKPITANIVVGT 202
AI ++P RELA +++ +E F K + + D K A IVV T
Sbjct: 493 IAIIMTPTRELA---VQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKR-GAEIVVCT 548
Query: 203 PGTVLDLIRR---KMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSA 259
PG ++D++ ++ NL VLDEAD M D G Q +R+ + Q VLFSA
Sbjct: 549 PGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDL-GFEPQVMRIINNIRPDRQTVLFSA 607
Query: 260 TFDDGVRQYAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGS 319
TF + A+K++ V + + V S ++Q+ ++ EE K++ L EL G L
Sbjct: 608 TFPRAMEALARKVLKKPVEITVGGRSVVASEVEQI-VEVRPEESKFSRLLELLGELYNNQ 666
Query: 320 ----SIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTN 375
+++FV +++A+ L + L K G+ + +HG DRD I D++ G VLI T+
Sbjct: 667 LDVRTLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYKAGVFDVLIATS 726
Query: 376 VLARGIDIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFI---HDKKS 432
V+ARG+D+ S+ +VVNYD PN D YVH VA++FI +K +
Sbjct: 727 VVARGLDVKSLQLVVNYD---CPNHMED---YVHRVGRTGRAGHTGVAVTFITPEQEKYA 780
Query: 433 FEVLSAIQ 440
++ A++
Sbjct: 781 VDIAKALK 788
>CE01338 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 363
Score = 142 bits (358), Expect = 1e-33
Identities = 89/300 (29%), Positives = 163/300 (53%), Gaps = 8/300 (2%)
Query: 95 YAMKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAIC 154
Y F+KPS IQ+ A+ ++ QSQ+G+GKT + +L +D Q I
Sbjct: 12 YGFGFEKPSAIQKSAVAPCTTGK--DVTIQSQAGSGKTVISLIDILQGIDCEDAHLQVIL 69
Query: 155 LSPARELARQTLEVIQEMGKFTKTSSQLVVPDSFERNKPITANIVVGTPGTVLDLIRRKM 214
L+P R +A++ E ++ +G+ ++ + D+ N I+ ++++GTP L I
Sbjct: 70 LAPQRGMAQRAHEQLKSLGRNLNVNATCLGFDTTAENDKIS-HVLMGTPKDFLSNIPS-- 126
Query: 215 LNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAKKIIP 274
+ IK+FVLDEAD ML K G DQ V + +P+ Q+VL SAT V + +
Sbjct: 127 -DTSRIKMFVLDEADEMLSK-GFKDQIYEVFRSMPQDVQVVLLSATMPSEVLDVTNRFMR 184
Query: 275 TAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQTANLLY 334
+ + ++K+E+ + I+Q +++ +E K+ L +L ++IF T++ L
Sbjct: 185 DPIRILVKKDELTLEGIRQFYINVQKDEWKFNCLCDLLKTSRETQALIFCNTRRRVTQLT 244
Query: 335 AKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVNYDL 394
+L +VS HG+++ +R+ ++ DF ++VL+TT+++ARG++I S+++NYD+
Sbjct: 245 EQLMSIPIKVSCFHGNMEHNEREDMVKDFNSRNTRVLVTTDLMARGMNIRK-SLIINYDV 303
>7294824 [K] KOG4284 DEAD box protein
Length = 1028
Score = 142 bits (357), Expect = 1e-33
Identities = 89/354 (25%), Positives = 174/354 (49%), Gaps = 19/354 (5%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICLSPA 158
F P+KIQ A+P+ + ++I QS+SGTGKT + + ++ +PN+N A+ + P
Sbjct: 45 FVTPTKIQAAAIPMALAKM--DLIIQSKSGTGKTLIYVIAVVQSFNPNINQPHAMIVVPT 102
Query: 159 RELARQTLEVIQEMGKFT---KTSSQLVVPD-SFERNKPITANIVVGTPGTVLDLIRRKM 214
RELA Q + + K K S+ + D + +R + + +++GTPG +L L ++
Sbjct: 103 RELAIQVQDTFFHLCKSFRDFKCSAFIGGTDVAKDRKRMNESRVIIGTPGRLLHLYENRV 162
Query: 215 LNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAKKIIP 274
++ +++ VLDEAD + + L ++ + +PK Q++ SAT+D + + K++
Sbjct: 163 FDVSKLRLLVLDEADQLYQTKSLQHTVSKLIEAMPKNRQIIACSATYDQNLDERLAKVMD 222
Query: 275 TAVSLELQKNEVNVSAIKQLFMDCDNEEH-------KYTILSELYGLLTIGSSIIFVKTK 327
+ + + + I+Q + + + K IL +++ L +IIF ++
Sbjct: 223 KPMLISNSERATVLLGIRQFVYELPQQNNSVEEMRLKLQILGQIFNQLPYEQAIIFASSQ 282
Query: 328 QTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVS 387
A+ L G ++ G ++ +R + + +R ++L+ T+++ARG+D P +
Sbjct: 283 MRADSYKNYLTASGIDCHLISGAMEQSERLHVFEGYRNFTMRILVATDLMARGVDSPHAN 342
Query: 388 MVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQK 441
+V+N D P D TY+H +AI+FI KK + + K
Sbjct: 343 LVINIDPP------QDHVTYLHRIGRAGRFGSKGIAITFIASKKESQRFREMSK 390
>ECU02g0670 [A] KOG0335 ATP-dependent RNA helicase
Length = 503
Score = 140 bits (354), Expect = 3e-33
Identities = 107/345 (31%), Positives = 170/345 (49%), Gaps = 34/345 (9%)
Query: 98 KFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICLSP 157
++ P+ IQ+ +P L+ N+I ++ +G GKT F + ++ R + QA +SP
Sbjct: 116 EYSAPTIIQKYCIPSLVDG--RNLICRAPTGMGKTMCFLIPIIER-HRQMKKPQACIISP 172
Query: 158 ARELARQTLEVIQEMGKFTKTSSQLVVPDSFERNKPITA----NIVVGTPGTVLDLIRRK 213
REL Q + E K S++ V + + + + + +IVV TPG ++DL+ RK
Sbjct: 173 TRELCEQ---IRVEASKLV-AGSRIRVVSIYGKKQDLPSYSGVDIVVATPGRLIDLLHRK 228
Query: 214 MLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAKKII 273
++L I++FVLDEAD +LD G + F+PK Q LFSAT+ + + +
Sbjct: 229 KVDLSEIRMFVLDEADKLLD-MGFEIPIREIHGFVPKNTQTCLFSATYSPKLTRMINYFL 287
Query: 274 PT-AVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGL-LTIGSS----------I 321
P VS+E+ + I+Q ++ N+ K +L+ L G + + S +
Sbjct: 288 PEDKVSIEISSE--TLKNIRQEIVEVRNK--KKMLLNILKGPDINLKGSWRMEVQPDKVL 343
Query: 322 IFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGI 381
+FV+ K + LKK G LHGD + DRD + FR GR V++ T+V ARGI
Sbjct: 344 VFVERKSECGEVEKVLKKSGILCVSLHGDKEQADRDEALKGFRNGRFPVMVATSVAARGI 403
Query: 382 DIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISF 426
DI V +V+NYD+P D Y+H +ISF
Sbjct: 404 DIKDVKLVINYDIP------KDIKEYIHRIGRTGREGKSGKSISF 442
>SPAC823.08c [A] KOG0330 ATP-dependent RNA helicase
Length = 465
Score = 140 bits (352), Expect = 5e-33
Identities = 106/362 (29%), Positives = 179/362 (49%), Gaps = 22/362 (6%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICLSPA 158
F+ P+ IQ++A+P+++ ++I +Q+G+GKTAAF+L ++ + N + A+ L+P
Sbjct: 66 FKTPTPIQQEAIPVVLNK--RDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLAPT 123
Query: 159 RELARQTLEVIQEMGKFTKTSSQLVVPDSFERNKPITAN----IVVGTPGTVLD-LIRRK 213
RELA Q E + +G S ++V + + + ++V TPG ++D L K
Sbjct: 124 RELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLMDHLENTK 183
Query: 214 MLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAKKII 273
+L ++K ++DEAD +LD G ++ K +P + +LFSAT V + + +
Sbjct: 184 GFSLKNLKYLIMDEADRLLDMD-FGPIIDKILKIIPHERRTLLFSATMTSKVEKLQRASL 242
Query: 274 --PTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQTAN 331
P V++ + + V+ + LF +HK T L L L S IIF +T
Sbjct: 243 HQPVRVAVSSKFSTVDTLIQRYLFFPF---KHKDTYLVYLVNELAGNSIIIFARTVNDTQ 299
Query: 332 LLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVN 391
L L+ G LHG L +R ++ F+ G L+ T+V ARG+DIP V +V+N
Sbjct: 300 RLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARSTLVATDVAARGLDIPLVDVVIN 359
Query: 392 YDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFI--HDKKSF-EVLSAIQKYFGDIEI 448
YD+PT D Y+H +I+ + +D + F + + I K + EI
Sbjct: 360 YDIPT------DSKAYIHRVGRTARAGRAGKSIALVTQYDLEPFLRIEATIGKKMQEYEI 413
Query: 449 TK 450
K
Sbjct: 414 DK 415
>7295314 [A] KOG0331 ATP-dependent RNA helicase
Length = 811
Score = 139 bits (351), Expect = 7e-33
Identities = 97/327 (29%), Positives = 167/327 (50%), Gaps = 29/327 (8%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQ-----AI 153
F KP+ IQ + P+ + +++ +Q+G+GKT A+ L + ++ + A+
Sbjct: 170 FAKPTAIQAQGWPIAMSG--RDLVGVAQTGSGKTLAYVLPAVVHINNQPRLERGDGPIAL 227
Query: 154 CLSPARELARQTLEVIQEMGKFTKTSSQLVVPDSFE----RNKPITANIVVGTPGTVLDL 209
L+P RELA+Q +V E G T + + + + R+ IV+ TPG ++D
Sbjct: 228 VLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQARDLERGVEIVIATPGRLIDF 287
Query: 210 IRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYA 269
+ R +L VLDEAD MLD G Q ++ + + Q++++SAT+ VRQ A
Sbjct: 288 LERGTTSLKRCTYLVLDEADRMLD-MGFEPQIRKIMQQIRPDRQVLMWSATWPKEVRQLA 346
Query: 270 KKIIPTAVSLELQKNEVNVSA-IKQLFMDCDNEEHKYTILSELYGLLTIGSS------II 322
++ + + + + ++ + I Q+ CD E L +L LLT S+ II
Sbjct: 347 EEFLNNYIQVNIGSLSLSANHNILQIVDVCDENEK----LMKLIKLLTDISAENETKTII 402
Query: 323 FVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGID 382
FV+TK+ + + + ++G + +HGD Q+RD ++ FR GR +L+ T+V ARG+D
Sbjct: 403 FVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSILVATDVAARGLD 462
Query: 383 IPSVSMVVNYDLPTLPNGQADPSTYVH 409
+ V V+NYD P ++ YVH
Sbjct: 463 VDDVKFVINYDYP------SNSEDYVH 483
>At3g22310 [A] KOG0331 ATP-dependent RNA helicase
Length = 610
Score = 139 bits (350), Expect = 9e-33
Identities = 103/346 (29%), Positives = 168/346 (47%), Gaps = 41/346 (11%)
Query: 120 NMIAQSQSGTGKTAAFSLTMLTRV------DPNVNSTQAICLSPARELARQTLEVIQEMG 173
+MI ++++GTGKT AF + ++ ++ + Q + L+P RELARQ + +E
Sbjct: 155 DMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEKEFRESA 214
Query: 174 KFTKT----SSQLVVPDSFERNKPITANIVVGTPGTVLDLIRRKMLNLGSIKVFVLDEAD 229
T + E N I ++ VGTPG ++DL++R LNL ++ VLDEAD
Sbjct: 215 PSLDTICLYGGTPIGQQMRELNYGI--DVAVGTPGRIIDLMKRGALNLSEVQFVVLDEAD 272
Query: 230 NMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAKKIIPTAVSLELQKNEVNVS 289
ML + G + + + LP Q ++FSAT +R KK + ++++L V
Sbjct: 273 QML-QVGFAEDVEIILQKLPAKRQSMMFSATMPSWIRSLTKKYLNNPLTIDL------VG 325
Query: 290 AIKQLFMDCDNEEHKYTILSELYGLLTI-----------GSSIIFVKTKQTANLLYAKLK 338
Q D Y+I ++ YG +I G I+F +TK+ A+ L L
Sbjct: 326 DSDQKLADGIT---MYSIAADSYGRASIIGPLVKEHGKGGKCIVFTQTKRDADRLAFGLA 382
Query: 339 KEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVNYDLPTLP 398
K ++ LHGD+ R+R + FR+G +L+ T+V ARG+D+P+V +V++Y+LP
Sbjct: 383 KS-YKCEALHGDISQAQRERTLAGFRDGNFSILVATDVAARGLDVPNVDLVIHYELPN-- 439
Query: 399 NGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYFG 444
+ T+VH AI IH + + I+K G
Sbjct: 440 ----NTETFVHRTGRTGRAGKKGSAI-LIHGQDQTRAVKMIEKEVG 480
>7298989 [A] KOG0336 ATP-dependent RNA helicase
Length = 703
Score = 139 bits (350), Expect = 9e-33
Identities = 104/344 (30%), Positives = 174/344 (50%), Gaps = 26/344 (7%)
Query: 97 MKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVN------ST 150
M F KPS IQ +A P+L++ H+MI +Q+GTGKT AF L + +
Sbjct: 301 MGFSKPSPIQSQAWPILLQG--HDMIGIAQTGTGKTLAFLLPGMIHTEYQSTPRGTRGGA 358
Query: 151 QAICLSPARELARQTLEVIQEMGKFTKTSSQLV-VPDSFERNKPIT-----ANIVVGTPG 204
+ L+P RELA L++ E+ K++ + V V RN I+ A I++ TPG
Sbjct: 359 NVLVLAPTRELA---LQIEMEVKKYSFRGMKAVCVYGGGNRNMQISDLERGAEIIICTPG 415
Query: 205 TVLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDG 264
+ DLI ++++ +I VLDEAD MLD G Q +V + Q ++ SAT+ G
Sbjct: 416 RLNDLIMANVIDVSTITYLVLDEADRMLD-MGFEPQIRKVMLDIRPDRQTIMTSATWPPG 474
Query: 265 VRQYAKKIIPTAVSLELQKNEVNVS-AIKQLFMDCDNEEHKY-TILSELYGLLTIGSSII 322
VR+ A+ + + + + ++ + ++KQ+ +++ K+ TI S + + + II
Sbjct: 475 VRRLAQSYMKNPIQVCVGSLDLAATHSVKQIIKLMEDDMDKFNTITSFVKNMSSTDKIII 534
Query: 323 FVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGID 382
F K A+ L ++L +G +HG+ DR++ I D + G ++L+ T+V +RG+D
Sbjct: 535 FCGRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSGVVRILVATDVASRGLD 594
Query: 383 IPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISF 426
I ++ V+NYD P + YVH +ISF
Sbjct: 595 IEDITHVINYDFP------HNIEEYVHRVGRTGRAGRQGTSISF 632
>YOR204w [A] KOG0335 ATP-dependent RNA helicase
Length = 604
Score = 139 bits (349), Expect = 1e-32
Identities = 105/361 (29%), Positives = 176/361 (48%), Gaps = 39/361 (10%)
Query: 98 KFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQ------ 151
+F KP+ +Q+ ++P++ +++A +Q+G+GKT F +L+ S Q
Sbjct: 161 RFTKPTPVQKYSVPIVANG--RDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQGS 218
Query: 152 ---------AICLSPARELARQTLEVIQEMGKFTKTS--SQLVVPDSFERNKPIT----- 195
A+ ++P RELA Q + E KFT S VV +
Sbjct: 219 FYQRKAYPTAVIMAPTRELATQ---IFDEAKKFTYRSWVKACVVYGGSPIGNQLREIERG 275
Query: 196 ANIVVGTPGTVLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTC--- 252
+++V TPG + DL+ R ++L ++K VLDEAD MLD G Q + + T
Sbjct: 276 CDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLD-MGFEPQIRHIVEDCDMTPVGE 334
Query: 253 -QLVLFSATFDDGVRQYAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSEL 311
Q ++FSATF ++ A+ + + L + + I Q + +N++ K +L +L
Sbjct: 335 RQTLMFSATFPADIQHLARDFLSDYIFLSVGRVGSTSENITQKVLYVENQDKKSALL-DL 393
Query: 312 YGLLTIGSSIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVL 371
T G ++IFV+TK+ A+ L L + + + +HGD +R+R + FR G + +L
Sbjct: 394 LSASTDGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLL 453
Query: 372 ITTNVLARGIDIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKK 431
+ T V ARG+DIP+V+ V+NYDLP +D YVH +A +F + +
Sbjct: 454 VATAVAARGLDIPNVTHVINYDLP------SDVDDYVHRIGRTGRAGNTGLATAFFNSEN 507
Query: 432 S 432
S
Sbjct: 508 S 508
>SPAC31A2.07c [A] KOG0337 ATP-dependent RNA helicase
Length = 848
Score = 138 bits (347), Expect = 2e-32
Identities = 100/342 (29%), Positives = 166/342 (48%), Gaps = 45/342 (13%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNV--NSTQAICLS 156
F+ P+ IQ K +PLL+ +++ +++G+GKTAAF + M+ + + ++T+A+ LS
Sbjct: 89 FKAPTPIQRKTIPLLLEG--RDVVGMARTGSGKTAAFVIPMIEHLKSTLANSNTRALILS 146
Query: 157 PARELARQTLEVIQEMGKFTKTSSQLVVPD-SFERNKPITA---NIVVGTPGTVLDLIRR 212
P RELA QT++V+++ K T S +V S E + + +IVV TPG L L
Sbjct: 147 PNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATPGRFLHLKVE 206
Query: 213 KMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAKKI 272
L L SI+ V DEAD + + G Q + LP + Q +LFSAT + +AK
Sbjct: 207 MKLELSSIEYVVFDEADRLFE-MGFAAQLTEILHALPTSRQTLLFSATLPRTLVDFAKAG 265
Query: 273 IPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTI--------------- 317
+ V + L + ++ F E + +L L ++ +
Sbjct: 266 LQDPVLVRLDVESKVSADLQSAFFSVKTAEREAALLCILQDIIKLPLKDNVRPREIGNVN 325
Query: 318 ---------------------GSSIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDR 356
S+++FV TK + L + G+ VS ++G L + R
Sbjct: 326 NPKKRKRALELALKGSESGSPDSTLVFVPTKHHVEYVSELLVQAGYSVSKIYGSLDQEAR 385
Query: 357 DRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVNYDLPTLP 398
I++FR G++ +L+ T+V +RGIDIP ++ V+NYD P P
Sbjct: 386 LNEINNFRLGKTNLLVVTDVASRGIDIPLLANVINYDFPPQP 427
>Hs11321632 [A] KOG0339 ATP-dependent RNA helicase
Length = 709
Score = 138 bits (347), Expect = 2e-32
Identities = 103/348 (29%), Positives = 173/348 (49%), Gaps = 25/348 (7%)
Query: 98 KFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRV------DPNVNSTQ 151
++ +P+ IQ + +P+ + +MI +++G+GKTAAF ML + +P +
Sbjct: 153 EYTQPTPIQCQGVPVALSG--RDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPG-DGPI 209
Query: 152 AICLSPARELARQTLEVIQEMGKFTKTSSQLVVPDS--FERNKPIT--ANIVVGTPGTVL 207
A+ + P REL +Q + GK S V +E+ K + A IVV TPG ++
Sbjct: 210 AVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLI 269
Query: 208 DLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQ 267
D +++K NL + V DEAD M D G Q + + Q +LFSATF + +
Sbjct: 270 DHVKKKATNLQRVSYLVFDEADRMFD-MGFEYQVRSIASHVRPDRQTLLFSATFRKKIEK 328
Query: 268 YAKKIIPTAVSL---ELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFV 324
A+ I+ + + ++ + +V+ I ++ ++ + T L + GS ++FV
Sbjct: 329 LARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLT--RRLVEFTSSGSVLLFV 386
Query: 325 KTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIP 384
K A L LK+EGH + +LHGD+ +R+++I DF++ VL+ T+V ARG+DIP
Sbjct: 387 TKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIP 446
Query: 385 SVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKS 432
S+ V+NYD+ D T+ H VA + + K S
Sbjct: 447 SIKTVINYDV------ARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDS 488
>At2g33730 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 733
Score = 137 bits (344), Expect = 5e-32
Identities = 112/368 (30%), Positives = 177/368 (47%), Gaps = 45/368 (12%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTML---TRVDP--NVNSTQ-- 151
++KPS IQ A+PL ++ ++I +++G+GKTAAF L ML +R+ P N T+
Sbjct: 333 YKKPSPIQMAAIPLGLQQ--RDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGP 390
Query: 152 -AICLSPARELARQTLEVIQEMGKFT--KTSSQLVVPDSFERNKPIT--ANIVVGTPGTV 206
A+ ++P RELA+Q E + + + +S + E+ IT IV+ TPG +
Sbjct: 391 YAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQGLKITQGCEIVIATPGRL 450
Query: 207 LDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTC-------------- 252
+D + R+ L VLDEAD M+D G Q V +P +
Sbjct: 451 IDCLERRYAVLNQCNYVVLDEADRMID-MGFEPQVAGVLDAMPSSNLKPENEEEELDEKK 509
Query: 253 ---QLVLFSATFDDGVRQYAKKII--PTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTI 307
+FSAT GV + A+K + P V++ ++ + + M E K+
Sbjct: 510 IYRTTYMFSATMPPGVERLARKYLRNPVVVTIGTAGKTTDLISQHVIMM---KESEKFFR 566
Query: 308 LSELYGLLTIGSSIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGR 367
L +L L ++I+FV TK+ + + L K G++V+ LHG + R+ ++ FR R
Sbjct: 567 LQKLLDELGEKTAIVFVNTKKNCDSIAKNLDKAGYRVTTLHGGKSQEQREISLEGFRAKR 626
Query: 368 SKVLITTNVLARGIDIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISF- 426
VL+ T+V+ RGIDIP V+ V+NYD+P Y H VA SF
Sbjct: 627 YNVLVATDVVGRGIDIPDVAHVINYDMP------KHIEMYTHRIGRTGRAGKSGVATSFL 680
Query: 427 -IHDKKSF 433
+HD + F
Sbjct: 681 TLHDTEVF 688
>7293060 [A] KOG0334 RNA helicase
Length = 1224
Score = 137 bits (344), Expect = 5e-32
Identities = 112/364 (30%), Positives = 185/364 (50%), Gaps = 37/364 (10%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRV--DPNVNSTQ---AI 153
F+KP+ IQ +A+P ++ ++I +++G+GKT AF L M + P++ AI
Sbjct: 530 FEKPTPIQCQAIPAIMSG--RDLIGIAKTGSGKTLAFILPMFRHILDQPSMEDGDGAIAI 587
Query: 154 CLSPARELARQTLEVIQEMGKFTKTSS--QLVVPDSFERNKPIT-----ANIVVGTPGTV 206
++P REL Q + +++ KF+K+ + V ++ I A I+V TPG +
Sbjct: 588 IMAPTRELCMQ---IGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAEIIVCTPGRM 644
Query: 207 LDLIRR---KMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDD 263
+D++ ++ NL + VLDEAD M D G Q +R+ + Q V+FSATF
Sbjct: 645 IDMLAANSGRVTNLRRVTYVVLDEADRMFD-MGFEPQVMRIIDNVRPDRQTVMFSATFPR 703
Query: 264 GVRQYAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLT-IGSSII 322
+ A++I+ + + + V ++Q + N++ K+ L EL G+ GS I+
Sbjct: 704 QMEALARRILKKPIEVIVGGRSVVCKEVEQHVVIL-NDDAKFFKLLELLGIYQEAGSIIV 762
Query: 323 FVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGID 382
FV ++ A++L L K + LHG + DRD I DF+ G+ ++LI T+V ARG+D
Sbjct: 763 FVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARGLD 822
Query: 383 IPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKY 442
+ + +VVNYD +PN D YVH A +FI ++S +Y
Sbjct: 823 VKDLILVVNYD---VPNHYED---YVHRCGRTGRAGKKGSAYTFITPEQS--------RY 868
Query: 443 FGDI 446
GDI
Sbjct: 869 AGDI 872
>7290853 [A] KOG0331 ATP-dependent RNA helicase
Length = 945
Score = 136 bits (343), Expect = 6e-32
Identities = 96/368 (26%), Positives = 182/368 (49%), Gaps = 37/368 (10%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRV--DPNVNSTQ---AI 153
F KP+ IQ + P+ + +++ +Q+G+GKT A+ L + + P + + A+
Sbjct: 257 FTKPTAIQSQGWPIALSG--RDLVGIAQTGSGKTLAYMLPAIVHIGNQPPIIRGEGPIAL 314
Query: 154 CLSPARELARQTLEVIQEMGKFTKTSSQLV--------VPDSFERNKPITANIVVGTPGT 205
L+P RELA+Q V+++ G K + VP + + ++ + +++ TPG
Sbjct: 315 VLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQARDLDRGV--EVIIATPGR 372
Query: 206 VLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGV 265
++D + + NL VLDEAD MLD G Q ++ + + Q+V++SAT+ V
Sbjct: 373 LIDFLENRNTNLQRCTYLVLDEADRMLD-MGFEPQIRKIIEQIRPDRQVVMWSATWPKEV 431
Query: 266 RQYAKKIIPTAV-----SLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSS 320
+ A + + S+ L N N+ I ++ + + + +L+E+ + G++
Sbjct: 432 QALAGDFLNDYIQINIGSMNLSANH-NIRQIVEICTEIEKPQRLVCLLNEISPIKNSGNN 490
Query: 321 ----IIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNV 376
I+FV+TK + ++ EG+ + +HGD +RD ++ DFR G+S +LI T+V
Sbjct: 491 GNKIIVFVETKIKVEDILQIIRAEGYNATSIHGDKTQNERDSVLKDFRNGKSNILIATDV 550
Query: 377 LARGIDIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFI---HDKKSF 433
+RG+D+ + V+NYD P YVH A +F + K++
Sbjct: 551 ASRGLDVEDLQYVINYDYPN------SSENYVHRIGRTGRCQQLGTAYTFFTPDNAKQAR 604
Query: 434 EVLSAIQK 441
E++S +++
Sbjct: 605 ELISVLEE 612
>Hs5453840_1 [A] KOG0331 ATP-dependent RNA helicase
Length = 469
Score = 136 bits (343), Expect = 6e-32
Identities = 101/342 (29%), Positives = 169/342 (48%), Gaps = 25/342 (7%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQA---ICL 155
F +P+ IQ + PL + +M+ +Q+G+GKT A+ L + ++ + ICL
Sbjct: 112 FTEPTPIQCQGFPLALSG--RDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICL 169
Query: 156 --SPARELARQTLEVIQEMGKFTKTSSQLVVPDSFE----RNKPITANIVVGTPGTVLDL 209
+P RELA+Q +V + GK ++ S + + + R+ I + TPG ++D
Sbjct: 170 VLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDF 229
Query: 210 IRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYA 269
+ NL VLDEAD MLD G Q ++ + Q +++SAT+ VRQ A
Sbjct: 230 LESGKTNLRRCTYLVLDEADRMLD-MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLA 288
Query: 270 KKIIPTAV-----SLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFV 324
+ + +LEL N N+ I + M+ + ++HK L E +IIFV
Sbjct: 289 EDFLRDYTQINVGNLELSANH-NILQIVDVCMESE-KDHKLIQLMEEIMAEKENKTIIFV 346
Query: 325 KTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIP 384
+TK+ + L +++++G +HGD +RD ++++FR G++ +LI T+V +RG+D+
Sbjct: 347 ETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVE 406
Query: 385 SVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISF 426
V V+NYD PN D YVH A +F
Sbjct: 407 DVKFVINYD---YPNSSED---YVHRIGRTARSTNKGTAYTF 442
>At3g58570 [A] KOG0335 ATP-dependent RNA helicase
Length = 646
Score = 135 bits (340), Expect = 1e-31
Identities = 105/362 (29%), Positives = 181/362 (49%), Gaps = 39/362 (10%)
Query: 98 KFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRV--DPNVNSTQ---- 151
K+ KP+ +Q A+P+L +++A +Q+G+GKTAAF +++ + D ++ +
Sbjct: 165 KYVKPTPVQRNAIPILAAG--RDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRG 222
Query: 152 ----AICLSPARELARQTLEVIQEMGKFT-KTSSQLVVP------DSFERNKPITANIVV 200
A+ LSP RELA Q + E KF+ +T ++VV + R +I+V
Sbjct: 223 VYPLAVILSPTRELACQ---IHDEARKFSYQTGVKVVVAYGGTPVNQQIRELERGVDILV 279
Query: 201 GTPGTVLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFL----PKTCQLVL 256
TPG + DL+ R ++L ++ LDEAD MLD G Q ++ + + P Q +L
Sbjct: 280 ATPGRLNDLLERGRVSLQMVRFLALDEADRMLD-MGFEPQIRKIVQQMDMPPPGVRQTML 338
Query: 257 FSATFDDGVRQYAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLT 316
FSATF +++ A + + L + + + I Q + + + ++ L+
Sbjct: 339 FSATFPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEFVHDSDKRSHLMDLLHAQRE 398
Query: 317 IGS------SIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKV 370
G+ +++FV+TK+ A+ L L G + +HGD Q+R+ + F+ GR+ +
Sbjct: 399 NGNQGKQALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQEREVALRSFKTGRTPI 458
Query: 371 LITTNVLARGIDIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDK 430
L+ T+V ARG+DIP V+ VVN+DLP D YVH +A +F +D
Sbjct: 459 LVATDVAARGLDIPHVAHVVNFDLPN------DIDDYVHRIGRTGRAGNSGLATAFFNDN 512
Query: 431 KS 432
+
Sbjct: 513 NT 514
>CE28369 [A] KOG0335 ATP-dependent RNA helicase
Length = 644
Score = 135 bits (339), Expect = 2e-31
Identities = 105/359 (29%), Positives = 181/359 (50%), Gaps = 39/359 (10%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRV---------DPNVNS 149
+ KP+ +Q+ ++P L+ + ++++ +Q+G+GKTAAF L ++ + P +
Sbjct: 143 YSKPTPVQKHSIPTLLAN--RDLMSCAQTGSGKTAAFLLPIIQHILAGGPDMVKPPAFTN 200
Query: 150 TQ------AICLSPARELARQTLEVIQEMGKFT-KTSSQLVVPDSFERNKPITAN----- 197
+ A+ LSP RELA +++ +E KF+ K++ Q + N N
Sbjct: 201 GRRTYYPCALVLSPTRELA---IQIHKEATKFSYKSNIQTAILYGGRENYRDQVNRLRAG 257
Query: 198 --IVVGTPGTVLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRV--KKFLPKTCQ 253
I++ TPG ++D+I + + L + VLDEAD MLD G Q ++ + PKT +
Sbjct: 258 THILIATPGRLIDIIEQGFIGLAGCRYLVLDEADRMLD-MGFEPQIRKIVGQGMPPKTAR 316
Query: 254 LV-LFSATFDDGVRQYAKKIIP-TAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSEL 311
+FSATF ++ AK + + L + + I+Q + + E + ++ L
Sbjct: 317 TTAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVGSTSENIEQRLLWVNEMEKRSNLMEIL 376
Query: 312 YGLLTIGSSIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVL 371
+ ++FV+TK+ AN L L ++ + +HGDL+ +R+R ++ FR G+ +L
Sbjct: 377 MNEHSENLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERERNLELFRSGQCPIL 436
Query: 372 ITTNVLARGIDIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDK 430
+ T V ARG+DIP+V V+NYDLP D YVH +A SF +DK
Sbjct: 437 VATAVAARGLDIPNVRHVINYDLP------GDSDEYVHRIGRTGRCGNLGIATSFFNDK 489
>CE24451 [A] KOG0335 ATP-dependent RNA helicase
Length = 641
Score = 135 bits (339), Expect = 2e-31
Identities = 105/359 (29%), Positives = 181/359 (50%), Gaps = 39/359 (10%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRV---------DPNVNS 149
+ KP+ +Q+ ++P L+ + ++++ +Q+G+GKTAAF L ++ + P +
Sbjct: 140 YSKPTPVQKHSIPTLLAN--RDLMSCAQTGSGKTAAFLLPIIQHILAGGPDMVKPPAFTN 197
Query: 150 TQ------AICLSPARELARQTLEVIQEMGKFT-KTSSQLVVPDSFERNKPITAN----- 197
+ A+ LSP RELA +++ +E KF+ K++ Q + N N
Sbjct: 198 GRRTYYPCALVLSPTRELA---IQIHKEATKFSYKSNIQTAILYGGRENYRDQVNRLRAG 254
Query: 198 --IVVGTPGTVLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRV--KKFLPKTCQ 253
I++ TPG ++D+I + + L + VLDEAD MLD G Q ++ + PKT +
Sbjct: 255 THILIATPGRLIDIIEQGFIGLAGCRYLVLDEADRMLD-MGFEPQIRKIVGQGMPPKTAR 313
Query: 254 LV-LFSATFDDGVRQYAKKIIP-TAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSEL 311
+FSATF ++ AK + + L + + I+Q + + E + ++ L
Sbjct: 314 TTAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVGSTSENIEQRLLWVNEMEKRSNLMEIL 373
Query: 312 YGLLTIGSSIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVL 371
+ ++FV+TK+ AN L L ++ + +HGDL+ +R+R ++ FR G+ +L
Sbjct: 374 MNEHSENLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERERNLELFRSGQCPIL 433
Query: 372 ITTNVLARGIDIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDK 430
+ T V ARG+DIP+V V+NYDLP D YVH +A SF +DK
Sbjct: 434 VATAVAARGLDIPNVRHVINYDLP------GDSDEYVHRIGRTGRCGNLGIATSFFNDK 486
>At2g42520 [A] KOG0335 ATP-dependent RNA helicase
Length = 633
Score = 135 bits (339), Expect = 2e-31
Identities = 108/361 (29%), Positives = 181/361 (49%), Gaps = 43/361 (11%)
Query: 98 KFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRV--DPNVNSTQ---- 151
K+ KP+ +Q A+P+L+ +++A +Q+G+GKTAAF +++ + D +V +
Sbjct: 178 KYVKPTPVQRHAIPILLEG--RDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRT 235
Query: 152 ----AICLSPARELARQTLEVIQEMGKFT-KTSSQLVVP------DSFERNKPITANIVV 200
A+ LSP RELA Q + E KF+ +T ++VV + R +I+V
Sbjct: 236 VYPLAVILSPTRELASQ---IHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGVDILV 292
Query: 201 GTPGTVLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPK----TCQLVL 256
TPG + DL+ R +++ I+ LDEAD MLD G Q ++ + + Q +L
Sbjct: 293 ATPGRLNDLLERARVSMQMIRFLALDEADRMLD-MGFEPQIRKIVEQMDMPPRGVRQTLL 351
Query: 257 FSATFDDGVRQYAKKIIPTAVSLELQKNEVNVSAIKQ---LFMDCDNEEHKYTIL----- 308
FSATF +++ A + + L + + + I Q +D D H +L
Sbjct: 352 FSATFPREIQRLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSDKRSHLMDLLHAQRE 411
Query: 309 SELYGLLTIGSSIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRS 368
+ + G + +++FV+TK+ A+ L L G + +HGD Q+R+ + F+ GR+
Sbjct: 412 NGIQGKQAL--TLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFKSGRT 469
Query: 369 KVLITTNVLARGIDIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIH 428
+L+ T+V ARG+DIP V+ VVN+DLP D YVH +A +F +
Sbjct: 470 PILVATDVAARGLDIPHVAHVVNFDLPN------DIDDYVHRIGRTGRAGKSGLATAFFN 523
Query: 429 D 429
D
Sbjct: 524 D 524
>7298204 [A] KOG0335 ATP-dependent RNA helicase
Length = 661
Score = 135 bits (339), Expect = 2e-31
Identities = 106/359 (29%), Positives = 185/359 (51%), Gaps = 32/359 (8%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRV--DPN---VNSTQAI 153
++ P+ IQ+ ++P++ +++A +Q+G+GKTAAF L +L+++ DP+ + Q +
Sbjct: 265 YKIPTPIQKCSIPVI--SSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVV 322
Query: 154 CLSPARELARQTLEVIQEMGKFTKTSSQLVV----PDSFE-RNKPIT--ANIVVGTPGTV 206
+SP RELA +++ E KF S + SF +N+ IT ++V+ TPG +
Sbjct: 323 IVSPTRELA---IQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRL 379
Query: 207 LDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTC--QLVLFSATFDDG 264
LD + R + + VLDEAD MLD G + R+ + Q ++FSATF +
Sbjct: 380 LDFVDRTFITFEDTRFVVLDEADRMLD-MGFSEDMRRIMTHVTMRPEHQTLMFSATFPEE 438
Query: 265 VRQYAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLT--IGSSII 322
+++ A + + V + + S +KQ E +KY S+L +L+ +I+
Sbjct: 439 IQRMAGEFLKNYVFVAIGIVGGACSDVKQTIY----EVNKYAKRSKLIEILSEQADGTIV 494
Query: 323 FVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGID 382
FV+TK+ A+ L + L ++ + +HGD R++ + DF+ G KVLI T+V +RG+D
Sbjct: 495 FVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLD 554
Query: 383 IPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQK 441
I ++ V+NYD+P + YVH A SF +K + + + K
Sbjct: 555 IKNIKHVINYDMP------SKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVK 607
>SPBC543.06c [A] KOG0340 ATP-dependent RNA helicase
Length = 453
Score = 134 bits (338), Expect = 2e-31
Identities = 111/371 (29%), Positives = 188/371 (49%), Gaps = 38/371 (10%)
Query: 96 AMKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICL 155
A+ +P+ IQE + ++ N I +++G+GKTAAF+L ++ + + + A+ L
Sbjct: 24 ALAIYEPTDIQEGVIAQILEG--RNCIGGAKTGSGKTAAFALPIIEKWSKDPSGIFALIL 81
Query: 156 SPARELARQTLEVIQEMGKFTKTSSQLVVP--DSFERNKPITA--NIVVGTPGTVLDLIR 211
+P RELA Q E +G L+V D ++ ++ ++VV TPG + DLIR
Sbjct: 82 TPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRPHVVVATPGRLADLIR 141
Query: 212 RK----MLNLGSIKVFVLDEADNMLDKQGLGD--QCIRVKKFLPKT--CQLVLFSATFDD 263
+ L IK V+DEAD +L D C V LP + Q +LF+AT D
Sbjct: 142 SNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSV---LPASEDRQTLLFTATVTD 198
Query: 264 GVRQYA----KKIIPTAVSLELQKNEVNV-SAIKQLFMDCDNEEHKYTILSELYGLLTIG 318
+RQ K P E++ + ++V S ++Q ++ ++ + + L LLTI
Sbjct: 199 AIRQLKYQPQKNNKPPLWLYEVETDNISVPSTLQQSYIFVSSQVRE----AYLVHLLTIP 254
Query: 319 -----SSIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLIT 373
S+IIFV +TA L+Y+ L+ +V+ LH ++ ++R + FR +K+L+
Sbjct: 255 ENAKKSAIIFVNRTRTAELIYSILRLLELRVTELHSEMVQRERINSLGRFRAEAAKILVA 314
Query: 374 TNVLARGIDIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSF 433
T+V +RG+DIPSV +V+N+DLP DP Y+H +IS + ++
Sbjct: 315 TDVASRGLDIPSVQLVINFDLP------RDPDDYIHRVGRTARAGRSGESISIV-TERDV 367
Query: 434 EVLSAIQKYFG 444
+++ AI+ G
Sbjct: 368 DLVHAIEDRVG 378
>At3g22330 [A] KOG0331 ATP-dependent RNA helicase
Length = 620
Score = 134 bits (338), Expect = 2e-31
Identities = 104/375 (27%), Positives = 182/375 (47%), Gaps = 43/375 (11%)
Query: 103 SKIQEKALPL--LIRDPP---HNMIAQSQSGTGKTAAFSLTMLTRV------DPNVNSTQ 151
SK EK P+ + +P +MI ++++GTGKT AF + ++ ++ +
Sbjct: 121 SKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPL 180
Query: 152 AICLSPARELARQTLEVIQEMGKFTKTSSQLVVPDSFERNKPIT--ANIVVGTPGTVLDL 209
+ L+P RELARQ + +E T ++ + + ++ VGTPG V+DL
Sbjct: 181 CLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPIGQQMRQLDYGVDVAVGTPGRVIDL 240
Query: 210 IRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYA 269
++R LNL ++ VLDEAD ML + G + + + LP+ Q ++FSAT +R
Sbjct: 241 MKRGALNLSEVQFVVLDEADQML-QVGFAEDVEIILEKLPEKRQSMMFSATMPSWIRSLT 299
Query: 270 KKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTI-----------G 318
KK + ++++L V Q D Y+I+++ YG +I G
Sbjct: 300 KKYLNNPLTVDL------VGDSDQKLADGITT---YSIIADSYGRASIIGPLVTEHAKGG 350
Query: 319 SSIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLA 378
I+F +TK+ A+ L L + + LHGD+ R+R + FR+G +L+ T+V A
Sbjct: 351 KCIVFTQTKRDADRLSYALARS-FKCEALHGDISQSQRERTLAGFRDGHFNILVATDVAA 409
Query: 379 RGIDIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSA 438
RG+D+P+V ++++Y+LP + T+VH AI I+ + +
Sbjct: 410 RGLDVPNVDLIIHYELPN------NTETFVHRTGRTGRAGKKGSAI-LIYSQDQSRAVKI 462
Query: 439 IQKYFGDIEITKVPT 453
I++ G T++P+
Sbjct: 463 IEREVGS-RFTELPS 476
>7299061 [A] KOG0335 ATP-dependent RNA helicase
Length = 798
Score = 134 bits (338), Expect = 2e-31
Identities = 108/363 (29%), Positives = 183/363 (49%), Gaps = 40/363 (11%)
Query: 98 KFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTR------VDPNVNSTQ 151
++ KP+ +Q+ A+P++I +++A +Q+G+GKTAAF + +L + V P ++ Q
Sbjct: 314 RYDKPTPVQKHAIPIIING--RDLMACAQTGSGKTAAFLVPILNQMYELGHVPPPQSTRQ 371
Query: 152 ---------AICLSPARELARQTLEVIQEMGKFTKTSSQLVVP--DSFERNKPIT--ANI 198
+ L+P RELA Q E ++ ++ ++ ++ E+ + + ++
Sbjct: 372 YSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHL 431
Query: 199 VVGTPGTVLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFL--PKTCQ--L 254
+V TPG + D+I R + L +I+ VLDEAD MLD G Q R+ + L P T Q
Sbjct: 432 IVATPGRLEDMITRGKVGLENIRFLVLDEADRMLD-MGFEPQIRRIVEQLNMPPTGQRQT 490
Query: 255 VLFSATFDDGVRQYAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGL 314
++FSATF +++ A + + L + + I Q + E K + L +L
Sbjct: 491 LMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWV-YEPDKRSYLLDLLSS 549
Query: 315 LTIGS-------SIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGR 367
+ G ++IFV+TK+ A+ L L + H V+ +HGD ++R+ + FR G
Sbjct: 550 IRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGD 609
Query: 368 SKVLITTNVLARGIDIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFI 427
+L+ T V ARG+DIP V V+N+DLP +D YVH VA SF
Sbjct: 610 CPILVATAVAARGLDIPHVKHVINFDLP------SDVEEYVHRIGRTGRMGNLGVATSFF 663
Query: 428 HDK 430
++K
Sbjct: 664 NEK 666
>At3g01540 [A] KOG0331 ATP-dependent RNA helicase
Length = 619
Score = 133 bits (335), Expect = 5e-31
Identities = 102/351 (29%), Positives = 173/351 (49%), Gaps = 34/351 (9%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQA----IC 154
F P+ IQ ++ P+ ++ +++A +++G+GKT + + + N ++ +
Sbjct: 178 FSAPTPIQAQSWPIAMQG--RDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILV 235
Query: 155 LSPARELARQTLEVIQEMGKFTKTSSQLVVPDSFE----RNKPITANIVVGTPGTVLDLI 210
LSP RELA Q E + G+ ++ S + + + R+ A+IVV TPG + D++
Sbjct: 236 LSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDIL 295
Query: 211 RRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAK 270
+ ++L I VLDEAD MLD G Q ++ K +P Q ++++AT+ GVR+ A
Sbjct: 296 EMRRISLRQISYLVLDEADRMLD-MGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAA 354
Query: 271 KIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEH--------KYTILSELYGLLTIGSS-I 321
++ + +VN+ + +L + +H K L ++ GS I
Sbjct: 355 DLL-------VNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLEQILRSQEPGSKVI 407
Query: 322 IFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGI 381
IF TK+ + L L ++ +I HGD +RD +++ FR GR+ VL+ T+V ARG+
Sbjct: 408 IFCSTKRMCDQLTRNLTRQFGAAAI-HGDKSQPERDNVLNQFRSGRTPVLVATDVAARGL 466
Query: 382 DIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKS 432
D+ + VVNYD PNG D YVH A +F D+ S
Sbjct: 467 DVKDIRAVVNYD---FPNGVED---YVHRIGRTGRAGATGQAFTFFGDQDS 511
>YPL119c [A] KOG0335 ATP-dependent RNA helicase
Length = 617
Score = 133 bits (334), Expect = 7e-31
Identities = 106/358 (29%), Positives = 173/358 (47%), Gaps = 43/358 (12%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRV-----DPNVNSTQ-- 151
F KP+ +Q+ ++P++ + +++A +Q+G+GKT F + T + P Q
Sbjct: 174 FTKPTPVQKYSIPIVTKG--RDLMACAQTGSGKTGGFLFPLFTELFRSGPSPVPEKAQSF 231
Query: 152 --------AICLSPARELARQTLEVIQEMGKFTKTSSQLVVPDSFERNKPIT-------- 195
A+ L+P RELA Q + +E KFT S V P PI
Sbjct: 232 YSRKGYPSALVLAPTRELATQ---IFEEARKFTYRS--WVRPCVVYGGAPIGNQMREVDR 286
Query: 196 -ANIVVGTPGTVLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLP----K 250
+++V TPG + DL+ R ++L +IK VLDEAD MLD G Q + + +
Sbjct: 287 GCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLD-MGFEPQIRHIVEECDMPSVE 345
Query: 251 TCQLVLFSATFDDGVRQYAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSE 310
Q ++FSATF ++ A+ + + L + + I Q + D+ + K +L +
Sbjct: 346 NRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYVDDMDKKSALL-D 404
Query: 311 LYGLLTIGSSIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKV 370
L G ++IFV+TK+ A+ L L + + + +HGD +R+R + F+ + +
Sbjct: 405 LLSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVADI 464
Query: 371 LITTNVLARGIDIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIH 428
L+ T V ARG+DIP+V+ V+NYDLP +D YVH VA SF +
Sbjct: 465 LVATAVAARGLDIPNVTHVINYDLP------SDIDDYVHRIGRTGRAGNTGVATSFFN 516
>SPCC1795.11 [A] KOG0335 ATP-dependent RNA helicase
Length = 636
Score = 133 bits (334), Expect = 7e-31
Identities = 106/361 (29%), Positives = 174/361 (47%), Gaps = 45/361 (12%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTR----------VD---- 144
+ +P+ +Q+ ++P++ +++A +Q+G+GKTA F +L+ VD
Sbjct: 189 YTQPTPVQKNSIPIVTSG--RDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAG 246
Query: 145 ----PNVNSTQAICLSPARELARQTLEVIQEMGKFTKTSSQLVVPDSFERNKPITANI-- 198
P + L+P REL Q + +E KF S V P + I A I
Sbjct: 247 MGYRPRKAYPTTLILAPTRELVCQ---IHEESRKFCYRS--WVRPCAVYGGADIRAQIRQ 301
Query: 199 -------VVGTPGTVLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKT 251
+ TPG ++DLI R ++L +IK VLDEAD MLD G Q + + T
Sbjct: 302 IDQGCDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLD-MGFEPQIRHIVEGADMT 360
Query: 252 C----QLVLFSATFDDGVRQYAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTI 307
Q ++FSATF ++ A+ + V L + + I Q + ++ E + +
Sbjct: 361 SVEERQTLMFSATFPRDIQLLARDFLKDYVFLSVGRVGSTSENITQKVVHVEDSEKRSYL 420
Query: 308 LSELYGLLTIGSSIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGR 367
L L+ L G ++IFV+TK+ A+ L L + +HGD ++R+R ++ FR GR
Sbjct: 421 LDILHTLPPEGLTLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRERERALELFRSGR 480
Query: 368 SKVLITTNVLARGIDIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFI 427
+ +++ T V +RG+DIP+V+ V+NYDLPT D YVH A++F
Sbjct: 481 TSIMVATAVASRGLDIPNVTHVINYDLPT------DIDDYVHRIGRTGRAGNTGQAVAFF 534
Query: 428 H 428
+
Sbjct: 535 N 535
>At1g55150 [A] KOG0331 ATP-dependent RNA helicase
Length = 501
Score = 133 bits (334), Expect = 7e-31
Identities = 86/307 (28%), Positives = 157/307 (51%), Gaps = 13/307 (4%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNV-----NSTQAI 153
F +P+ IQ + P+ ++ ++I +++G+GKT ++ L + V+ + +
Sbjct: 119 FTEPTPIQSQGWPMAMKG--RDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVL 176
Query: 154 CLSPARELARQTLEVIQEMGKFTKTSSQLV---VPDSFE-RNKPITANIVVGTPGTVLDL 209
L+P RELA Q + + G +K + + VP + R+ IV+ TPG ++D+
Sbjct: 177 VLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDM 236
Query: 210 IRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYA 269
+ NL + VLDEAD MLD G Q ++ + Q + +SAT+ V Q +
Sbjct: 237 MESNNTNLRRVTYLVLDEADRMLD-MGFDPQIRKIVSHIRPDRQTLYWSATWPKEVEQLS 295
Query: 270 KKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSI-IFVKTKQ 328
KK + + + +++ + + +D +E KY L +L + GS I +F+ TK+
Sbjct: 296 KKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQKYNKLVKLLEDIMDGSRILVFLDTKK 355
Query: 329 TANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSM 388
+ + +L+ +G +HGD +RD ++ +FR G+S ++ T+V ARG+D+ V
Sbjct: 356 GCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKY 415
Query: 389 VVNYDLP 395
V+NYD P
Sbjct: 416 VINYDFP 422
>7296646 [A] KOG0331 ATP-dependent RNA helicase
Length = 577
Score = 132 bits (333), Expect = 8e-31
Identities = 91/312 (29%), Positives = 161/312 (51%), Gaps = 19/312 (6%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQ------A 152
++ P+ IQ + P+ + N + +++G+GKT + L + ++ N Q A
Sbjct: 159 YKAPTAIQAQGWPIAMSGS--NFVGIAKTGSGKTLGYILPAIVHIN-NQQPLQRGDGPIA 215
Query: 153 ICLSPARELARQTLEVIQEMGKFTKTSSQLVVPDSFE----RNKPITANIVVGTPGTVLD 208
+ L+P RELA+Q +V E G + + V + + R+ IV+ TPG ++D
Sbjct: 216 LVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGCEIVIATPGRLID 275
Query: 209 LIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQY 268
+ NL VLDEAD MLD G Q ++ + Q +++SAT+ V+Q
Sbjct: 276 FLSAGSTNLKRCTYLVLDEADRMLD-MGFEPQIRKIVSQIRPDRQTLMWSATWPKEVKQL 334
Query: 269 AKKIIPTAVSLELQKNEVNVSA-IKQLFMDCDN---EEHKYTILSELYGLL-TIGSSIIF 323
A+ + + + + E++ + I+Q+ CD EE T+LS++Y + G IIF
Sbjct: 335 AEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLSDIYDTSESPGKIIIF 394
Query: 324 VKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDI 383
V+TK+ + L ++ G + +HGD +RD ++ +FR G+S +L+ T+V ARG+D+
Sbjct: 395 VETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDV 454
Query: 384 PSVSMVVNYDLP 395
+ V+N+D P
Sbjct: 455 DGIKYVINFDYP 466
>Hs20149629 [A] KOG0330 ATP-dependent RNA helicase
Length = 455
Score = 132 bits (331), Expect = 1e-30
Identities = 102/374 (27%), Positives = 180/374 (47%), Gaps = 18/374 (4%)
Query: 101 KPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICLSPARE 160
KP+KIQ +A+PL ++ ++I +++G+GKT AF+L +L + A+ L+P RE
Sbjct: 46 KPTKIQIEAIPLALQG--RDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRE 103
Query: 161 LARQTLEVIQEMGKFTKTSSQLVVP--DSFERNKPITA--NIVVGTPGTVLD-LIRRKML 215
LA Q E + +G S ++V DS ++ + +I++ TPG ++D L K
Sbjct: 104 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGF 163
Query: 216 NLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAKKIIPT 275
NL ++K V+DEAD +L+ + ++ K +P+ + LFSAT V++ + +
Sbjct: 164 NLRALKYLVMDEADRILNMD-FETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKN 222
Query: 276 AVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQTANLLYA 335
V + V ++Q ++ ++ K T L + L S +IF T
Sbjct: 223 PVKCAVSSKYQTVEKLQQYYIFIPSK-FKDTYLVYILNELAGNSFMIFCSTCNNTQRTAL 281
Query: 336 KLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVNYDLP 395
L+ G LHG + R ++ F+ +L+ T+V +RG+DIP V +VVN+D+P
Sbjct: 282 LLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIP 341
Query: 396 TLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYFGDIEITKVPTDD 455
T Y+H AI+F+ + E+ I+ G ++ PT D
Sbjct: 342 T------HSKDYIHRVGRTARAGRSGKAITFV-TQYDVELFQRIEHLIGK-KLPGFPTQD 393
Query: 456 LDEMETIVKKALKA 469
DE+ + ++ +A
Sbjct: 394 -DEVMMLTERVAEA 406
>Hs15316941 [A] KOG0344 ATP-dependent RNA helicase
Length = 491
Score = 131 bits (330), Expect = 2e-30
Identities = 94/311 (30%), Positives = 161/311 (51%), Gaps = 17/311 (5%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNST-QAICLSP 157
FQ P+ IQ +A+P+++ ++A + +G+GKT AFS+ +L ++ N +A+ +SP
Sbjct: 77 FQMPTPIQMQAIPVMLHG--RELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISP 134
Query: 158 ARELA----RQTLEVIQEMG-KFTKTSSQLVVPDSFERNKPITANIVVGTPGTVLDLIRR 212
RELA R+ +++ + G + V F +I+V TP ++ L+++
Sbjct: 135 TRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQ 194
Query: 213 KM--LNLGSIKVFVLDEADNMLD--KQGLGDQCIRVKKFLPKTCQLV---LFSATFDDGV 265
++L S++ V+DE+D + + K G DQ + FL T V +FSATF V
Sbjct: 195 DPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASI--FLACTSHKVRRAMFSATFAYDV 252
Query: 266 RQYAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVK 325
Q+ K + +S+ + V ++Q + +E K + EL ++FV+
Sbjct: 253 EQWCKLNLDNVISVSIGARNSAVETVEQELLFVGSETGKLLAMRELVKKGFNPPVLVFVQ 312
Query: 326 TKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPS 385
+ + A L+ +L EG V ++H + Q RD + FR G+ VLI T +LARGID
Sbjct: 313 SIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKG 372
Query: 386 VSMVVNYDLPT 396
V++V+NYD PT
Sbjct: 373 VNLVINYDFPT 383
>Hs14251212 [K] KOG4284 DEAD box protein
Length = 824
Score = 131 bits (330), Expect = 2e-30
Identities = 95/325 (29%), Positives = 160/325 (49%), Gaps = 19/325 (5%)
Query: 96 AMKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICL 155
A F++PS +Q KA+PL ++I Q++SGTGKT FS L + STQ + L
Sbjct: 79 AAGFERPSPVQLKAIPL--GRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILIL 136
Query: 156 SPARELARQTLEVIQEMG-KFTKTSSQLVV---PDSFERNKPITANIVVGTPGTVLDLIR 211
+P RE+A Q VI +G K + + P S ++ + +I VG+PG + LI
Sbjct: 137 APTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIE 196
Query: 212 RKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAKK 271
LN GSI++F+LDEAD +L++ +Q + LP + Q++ SAT+ + + K
Sbjct: 197 LDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTK 256
Query: 272 IIPTAVSLELQKNEVNVSAIKQLFMDCDNE-------EHKYTILSELYGLLTIGSSIIFV 324
+ + L ++ ++ +KQ + ++ E K L EL+ + +++F
Sbjct: 257 YMRDPTFVRLNSSDPSLIGLKQYYKVVNSYPLAHKVFEEKTQHLQELFSRIPFNQALVFS 316
Query: 325 KTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIP 384
A L L +G + G++ R + + +VLI+T++ +RGID
Sbjct: 317 NLHSRAQHLADILSSKGFPAECISGNMNQNQRLDAMAKLKHFHCRVLISTDLTSRGIDAE 376
Query: 385 SVSMVVNYDLPTLPNGQADPSTYVH 409
V++VVN D+P D TY+H
Sbjct: 377 KVNLVVNLDVP------LDWETYMH 395
>YLL008w [A] KOG0338 ATP-dependent RNA helicase
Length = 752
Score = 131 bits (329), Expect = 2e-30
Identities = 93/316 (29%), Positives = 162/316 (50%), Gaps = 22/316 (6%)
Query: 96 AMKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRV---DPNVNSTQA 152
++ + KPS IQ +P+ + ++IA + +G+GKTAAF + ++ R+ + ST+
Sbjct: 248 SLGYVKPSPIQSATIPIALLGK--DIIAGAVTGSGKTAAFMIPIIERLLYKPAKIASTRV 305
Query: 153 ICLSPARELARQTLEVIQEMGKFTKTSS--------QLVVPDSFERNKPITANIVVGTPG 204
I L P RELA Q +V +++ +F + L + +++P +IV+ TPG
Sbjct: 306 IVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRP---DIVIATPG 362
Query: 205 TVLDLIRRKM-LNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDD 263
+D IR N+ S+++ V+DEAD ML+ +G D+ + LP Q +LFSAT +
Sbjct: 363 RFIDHIRNSASFNVDSVEILVMDEADRMLE-EGFQDELNEIMGLLPSNRQNLLFSATMNS 421
Query: 264 GVRQYAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEH-KYTILSELYGLLTIGSS-- 320
++ + V + + + + + Q F+ +H K +L L L
Sbjct: 422 KIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLIRKLDPTGQKR 481
Query: 321 -IIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLAR 379
++FV K+TA+ L + G V LHG L + R ++ F+ VLI T++ +R
Sbjct: 482 IVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVLICTDLASR 541
Query: 380 GIDIPSVSMVVNYDLP 395
G+DIP + +V+NYD+P
Sbjct: 542 GLDIPKIEVVINYDMP 557
>YGL078c [A] KOG0331 ATP-dependent RNA helicase
Length = 523
Score = 131 bits (329), Expect = 2e-30
Identities = 104/402 (25%), Positives = 183/402 (44%), Gaps = 20/402 (4%)
Query: 6 KEASDLMARLNIKEPAKKASEDNDTTSXXXXXXXXXXXXXXXXPANKVINSEYEVKVNLA 65
K + ++ P K++ + + TS P + + E ++ +
Sbjct: 44 KHKKEKKGEKEVEVPEKESEKKPEPTSAVASEFYVQSEALTSLPQSDIDEYFKENEIAVE 103
Query: 66 DLQADANSPLYSVXXXXXXXXXXXXXXXXYAMKFQKPSKIQEKALPLLIRDPPHNMIAQS 125
D A PL S KF KP+ IQ A P L+ +++ +
Sbjct: 104 DSLDLALRPLLSFDYLSLDSSIQAEIS-----KFPKPTPIQAVAWPYLLSGK--DVVGVA 156
Query: 126 QSGTGKTAAFSLTMLTRV--DPNVNSTQAICLSPARELARQTLEVIQEMGKFTKTSSQLV 183
++G+GKT AF + ++ + D Q + +SP RELA Q + + + V
Sbjct: 157 ETGSGKTFAFGVPAISHLMNDQKKRGIQVLVISPTRELASQIYDNLIVLTDKVGMQCCCV 216
Query: 184 ---VPDSFERNKPITANIVVGTPGTVLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQ 240
VP +R + + +VV TPG +LDL++ ++L + VLDEAD ML+K D
Sbjct: 217 YGGVPKDEQRIQLKKSQVVVATPGRLLDLLQEGSVDLSQVNYLVLDEADRMLEKGFEEDI 276
Query: 241 CIRVKKFLPKTCQLVLFSATFDDGVRQYAKKIIPTAVSLELQKNEVNVSAIKQL-----F 295
+++ Q ++F+AT+ VR+ A + + + + + ++A K++
Sbjct: 277 KNIIRETDASKRQTLMFTATWPKEVRELASTFMNNPIKVSIGNTD-QLTANKRITQIVEV 335
Query: 296 MDCDNEEHKYTILSELY--GLLTIGSSIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQS 353
+D +E K L + Y G +IF K+ A + LK G+ V+ +HGDL
Sbjct: 336 VDPRGKERKLLELLKKYHSGPKKNEKVLIFALYKKEAARVERNLKYNGYNVAAIHGDLSQ 395
Query: 354 QDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVNYDLP 395
Q R + +++F+ G+S +L+ T+V ARG+DIP+V V+N P
Sbjct: 396 QQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFP 437
>Hs13514809 [A] KOG0335 ATP-dependent RNA helicase
Length = 660
Score = 131 bits (329), Expect = 2e-30
Identities = 103/362 (28%), Positives = 183/362 (50%), Gaps = 41/362 (11%)
Query: 98 KFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRV--DPNVNSTQAI-- 153
++ +P+ +Q+ A+P++ +++A +Q+G+GKTAAF L +L+++ D + +A+
Sbjct: 197 RYTRPTPVQKHAIPII--KGKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKE 254
Query: 154 --------------CLSPARELARQTLEVIQEMGKFTKTSS--QLVVPDSFERNKPIT-- 195
L+P RELA +++ +E KF+ S VV + + I
Sbjct: 255 NGRYGRRKQYPISLVLAPTRELA---VQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDL 311
Query: 196 ---ANIVVGTPGTVLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKK---FLP 249
+++V TPG ++D++ R + L K VLDEAD MLD G Q R+ + P
Sbjct: 312 ERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD-MGFEPQIRRIVEQDTMPP 370
Query: 250 KTCQ-LVLFSATFDDGVRQYAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTIL 308
K + ++FSATF ++ A+ + + L + + I Q + ++ + + +L
Sbjct: 371 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEDLDKRSFLL 430
Query: 309 SELYGLLTIGSSIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRS 368
L + +++FV+TK+ A+ L L EG+ + +HGD +DR+ + FR G+S
Sbjct: 431 DILGATGSDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKS 490
Query: 369 KVLITTNVLARGIDIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIH 428
+L+ T V ARG+DI +V V+N+DLP +D YVH +A SF +
Sbjct: 491 PILVATAVAARGLDISNVRHVINFDLP------SDIEEYVHRIGRTGRVGNLGLATSFFN 544
Query: 429 DK 430
+K
Sbjct: 545 EK 546
>Hs4758138 [A] KOG0331 ATP-dependent RNA helicase
Length = 614
Score = 130 bits (328), Expect = 3e-30
Identities = 93/342 (27%), Positives = 167/342 (48%), Gaps = 25/342 (7%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNV-----NSTQAI 153
F +P+ IQ + P+ + +M+ +Q+G+GKT ++ L + ++ + +
Sbjct: 114 FTEPTAIQAQGWPVALSGL--DMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICL 171
Query: 154 CLSPARELARQTLEVIQEMGKFTKTSSQLVVPDSFE----RNKPITANIVVGTPGTVLDL 209
L+P RELA+Q +V E + + S + + + R+ I + TPG ++D
Sbjct: 172 VLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDF 231
Query: 210 IRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYA 269
+ NL VLDEAD MLD G Q ++ + Q +++SAT+ VRQ A
Sbjct: 232 LECGKTNLRRTTYLVLDEADRMLD-MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLA 290
Query: 270 KKIIPTAV-----SLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFV 324
+ + + +LEL N N+ I + D + +E ++ E+ +I+FV
Sbjct: 291 EDFLKDYIHINIGALELSANH-NILQIVDVCHDVEKDEKLIRLMEEIMSEKE-NKTIVFV 348
Query: 325 KTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIP 384
+TK+ + L K++++G +HGD Q+RD ++++F+ G++ +LI T+V +RG+D+
Sbjct: 349 ETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVE 408
Query: 385 SVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISF 426
V V+NYD PN D Y+H A +F
Sbjct: 409 DVKFVINYD---YPNSSED---YIHRIGRTARSTKTGTAYTF 444
>Hs13514813 [A] KOG0335 ATP-dependent RNA helicase
Length = 662
Score = 130 bits (328), Expect = 3e-30
Identities = 102/362 (28%), Positives = 181/362 (49%), Gaps = 41/362 (11%)
Query: 98 KFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRV--DPNVNSTQA--- 152
++ +P+ +Q+ A+P++ +++A +Q+G+GKTAAF L +L+++ D + +A
Sbjct: 199 RYTRPTPVQKHAIPII--KEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKE 256
Query: 153 -------------ICLSPARELARQTLEVIQEMGKFTKTSS--QLVVPDSFERNKPIT-- 195
+ L+P RELA +++ +E KF+ S VV + + I
Sbjct: 257 NGRYGRRKQYPISLVLAPTRELA---VQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDL 313
Query: 196 ---ANIVVGTPGTVLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKK---FLP 249
+++V TPG ++D++ R + L K VLDEAD MLD G Q R+ + P
Sbjct: 314 ERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD-MGFEPQIRRIVEQDTMPP 372
Query: 250 KTCQ-LVLFSATFDDGVRQYAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTIL 308
K + ++FSATF ++ A+ + + L + + I Q + + + + +L
Sbjct: 373 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLL 432
Query: 309 SELYGLLTIGSSIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRS 368
L +++FV+TK+ A+ L L EG+ + +HGD +DR+ + FR G+S
Sbjct: 433 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKS 492
Query: 369 KVLITTNVLARGIDIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIH 428
+L+ T V ARG+DI +V V+N+DLP +D YVH +A SF +
Sbjct: 493 PILVATAVAARGLDISNVKHVINFDLP------SDIEEYVHRIGRTGRVGNLGLATSFFN 546
Query: 429 DK 430
++
Sbjct: 547 ER 548
>At5g63120 [A] KOG0331 ATP-dependent RNA helicase
Length = 564
Score = 130 bits (328), Expect = 3e-30
Identities = 100/357 (28%), Positives = 171/357 (47%), Gaps = 24/357 (6%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQ-----AI 153
F +P+ IQ + P+ ++ ++I +++G+GKT A+ L L V Q +
Sbjct: 158 FTEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVL 215
Query: 154 CLSPARELARQTLEVIQEMGKFTKTSSQLVVPDSFE----RNKPITANIVVGTPGTVLDL 209
L+P RELA Q E ++ G + S + + + R+ IV+ TPG ++D+
Sbjct: 216 ILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDM 275
Query: 210 IRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYA 269
+ + NL + VLDEAD MLD G Q ++ + Q +L+SAT+ V A
Sbjct: 276 LECQHTNLKRVTYLVLDEADRMLD-MGFEPQIRKIVSQIRPDRQTLLWSATWPREVETLA 334
Query: 270 KKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSI-IFVKTKQ 328
++ + + ++ + ++ KY L L L GS I IFV+TK+
Sbjct: 335 RQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQLMDGSKILIFVETKR 394
Query: 329 TANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSM 388
+ + +L+ +G +HGD +RDR++ +F+ GRS ++ T+V ARG+D+ +
Sbjct: 395 GCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLDVKDIKC 454
Query: 389 VVNYDLP-TLPNGQADPSTYVHXXXXXXXXXXXXVAISFI-HDKKSF--EVLSAIQK 441
VVNYD P TL + Y+H +A +F HD F E++ +Q+
Sbjct: 455 VVNYDFPNTLED-------YIHRIGRTGRAGAKGMAFTFFTHDNAKFARELVKILQE 504
>At1g20920 [A] KOG0334 RNA helicase
Length = 1166
Score = 130 bits (328), Expect = 3e-30
Identities = 106/350 (30%), Positives = 170/350 (48%), Gaps = 31/350 (8%)
Query: 97 MKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRV--DPNVNSTQA-- 152
+ ++KP IQ +ALP+++ + I +++G+GKT F L ML + P V +
Sbjct: 547 LNYEKPMPIQTQALPIIMSG--RDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPI 604
Query: 153 -ICLSPARELARQTLEVIQEMGKFTKTSSQLVVP--------DSFERNKPITANIVVGTP 203
+ ++P REL +Q + ++ KF+K VP K T IVV TP
Sbjct: 605 GLVMAPTRELVQQ---IHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGT-EIVVCTP 660
Query: 204 GTVLDLI---RRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSAT 260
G ++D++ K+ NL + V+DEAD M D G Q R+ + + Q VLFSAT
Sbjct: 661 GRMIDILCTSSGKITNLRRVTFLVMDEADRMFD-MGFEPQITRIIQNIRPERQTVLFSAT 719
Query: 261 FDDGVRQYAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTI-GS 319
F V A+K++ V +++ V I QL ++ E ++ L EL G + G
Sbjct: 720 FPRQVETLARKVLNKPVEIQVGGRSVVNKDITQL-VEVRPESDRFLRLLELLGEWSEKGK 778
Query: 320 SIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLAR 379
++FV++++ + LY + K + LHG DR+ I DF+ +LI T+V AR
Sbjct: 779 ILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLLIATSVAAR 838
Query: 380 GIDIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHD 429
G+D+ + +VVN+D PN D YVH A++FI +
Sbjct: 839 GLDVKELELVVNFD---APNHYED---YVHRVGRTGRAGRKGCAVTFISE 882
>7294797 [A] KOG0339 ATP-dependent RNA helicase
Length = 791
Score = 130 bits (327), Expect = 4e-30
Identities = 99/346 (28%), Positives = 167/346 (47%), Gaps = 25/346 (7%)
Query: 98 KFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNV-----NSTQA 152
++ +P+ IQ +A+P + ++I +++G+GKTAAF ML V +
Sbjct: 288 EYTQPTPIQAQAVPTALSG--RDIIGIAKTGSGKTAAFIWPMLMHVMDQKQLKPGDGPIG 345
Query: 153 ICLSPARELARQTLEVIQEMGKFTKTSSQLVV-----PDSFERNKPIT--ANIVVGTPGT 205
+ L+P REL+ L++ E KF K + VV +E++K + A I+V TPG
Sbjct: 346 LILAPTRELS---LQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSKALEQGAEIIVATPGR 402
Query: 206 VLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGV 265
++D+++ K NL + VLDEAD M G Q + + Q ++FSATF +
Sbjct: 403 MIDMVKMKATNLRRVTFLVLDEADRMFH-MGFEPQVRSICNHVRPDRQCLMFSATFKKRI 461
Query: 266 RQYAKKIIPTAVSL-ELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFV 324
+ A+ ++ V + + NE N + +++ + + +L L L+ GS +IFV
Sbjct: 462 ERLARDVLSDPVRIVQGDLNEANQDITQSVYVFPNPLQKWNWLLCHLVKFLSEGSVLIFV 521
Query: 325 KTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIP 384
K A + L + + +LHGD+ DR+++I F+ +L+ T+V ARG+DIP
Sbjct: 522 TKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQFKRKECDILVATDVAARGLDIP 581
Query: 385 SVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDK 430
+ VVNYD D T+ H A + + DK
Sbjct: 582 HIRNVVNYDT------ARDIETHTHRIGRTGRAGEKGNAYTLVTDK 621
>Hs9506931 [A] KOG0346 RNA helicase
Length = 547
Score = 129 bits (325), Expect = 7e-30
Identities = 102/380 (26%), Positives = 188/380 (48%), Gaps = 52/380 (13%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRV------DPNVN-STQ 151
+ +P+ IQEKA+PL + +++A++++G+GKTAA+++ ML + P V + +
Sbjct: 27 WSRPTLIQEKAIPLALEGK--DLLARARTGSGKTAAYAIPMLQLLLHRKATGPVVEQAVR 84
Query: 152 AICLSPARELARQTLEVIQEMGKF----TKTSSQLVVPDSFERNKPITA--NIVVGTPGT 205
+ L P +ELARQ +IQ++ + + ++ DS + + ++VVGTP
Sbjct: 85 GLVLVPTKELARQAQSMIQQLATYCARDVRVANVSAAEDSVSQRAVLMEKPDVVVGTPSR 144
Query: 206 VLDLIRRKMLNL-GSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDG 264
+L +++ L L S+++ V+DEAD +L G ++ + LP+ Q L SATF++
Sbjct: 145 ILSHLQQDSLKLRDSLELLVVDEAD-LLFSFGFEEELKSLLCHLPRIYQAFLMSATFNED 203
Query: 265 VRQYAKKIIPTAVSLELQKNEV-NVSAIKQLFMDCDNEEHKYTILSELYGLLTI-GSSII 322
V+ + I+ V+L+LQ++++ ++Q + C+ EE K+ +L L L I G S++
Sbjct: 204 VQALKELILHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLLYALLKLSLIRGKSLL 263
Query: 323 FVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNV------ 376
FV T + + L L++ +L+G+L + R +I F +G +I T+
Sbjct: 264 FVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHIISQFNQGFYDCVIATDAEVLGAP 323
Query: 377 ---------------------LARGIDIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXX 415
+ARGID VS V+N+DLP P Y+H
Sbjct: 324 VKGKRRGRGPKGDKASDPEAGVARGIDFHHVSAVLNFDLP------PTPEAYIHRAGRTA 377
Query: 416 XXXXXXVAISFIHDKKSFEV 435
+ ++F+ + F +
Sbjct: 378 RANNPGIVLTFVLPTEQFHL 397
>ECU08g1080 [A] KOG0331 ATP-dependent RNA helicase
Length = 495
Score = 129 bits (324), Expect = 9e-30
Identities = 96/310 (30%), Positives = 153/310 (48%), Gaps = 20/310 (6%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNV-----NSTQAI 153
F +P+ IQ + P+ + +M+ +Q+G+GKT +F L L + +
Sbjct: 107 FSEPTAIQGQGWPMALSG--RDMVGIAQTGSGKTLSFILPALVHAKDQQPLRRGDGPIVL 164
Query: 154 CLSPARELARQTLEVIQEM-GKFTKTSSQLVVPDSFE---RNKPITANIVVGTPGTVLDL 209
L+P REL Q +V+ E G F S+ + S + R A +V+ TPG ++DL
Sbjct: 165 VLAPTRELVMQIKKVVDEFCGMFNLRSTAVYGGASSQPQIRALHEGAEVVIATPGRLIDL 224
Query: 210 IRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTC---QLVLFSATFDDGVR 266
+ L + VLDEAD MLD G Q ++K +PKT Q +++SAT+ VR
Sbjct: 225 HDQGHAPLSRVTFLVLDEADRMLD-MGFEPQ---LRKIIPKTNANRQTLMWSATWPREVR 280
Query: 267 QYAKKIIPTAVSLELQKNEVNV-SAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVK 325
A+ + + + + E+ S IKQ+ C E + ++ L I+F
Sbjct: 281 GLAESYMNEYIQVVVGNEELKTNSKIKQIVEVCSGREKEDKLIGVLDNFKG-DKVIVFCN 339
Query: 326 TKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPS 385
K+T + L L + G+ + LHGD RD+++DDFR GR +LI T V RG+D+
Sbjct: 340 MKRTCDDLEYVLNRSGYGAAALHGDKSQNIRDKVLDDFRSGRRPILIATEVAGRGLDVND 399
Query: 386 VSMVVNYDLP 395
V +V+N+D P
Sbjct: 400 VKLVINFDFP 409
>CE28485 [K] KOG4284 DEAD box protein
Length = 963
Score = 129 bits (324), Expect = 9e-30
Identities = 86/337 (25%), Positives = 162/337 (47%), Gaps = 16/337 (4%)
Query: 120 NMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICLSPARELARQTLEVIQEMGKFTKTS 179
+M+ Q++SGTGKT FS+ + +D + Q + ++P RE++ Q E ++++ +
Sbjct: 51 DMLVQAKSGTGKTLVFSVLAVENLDSRSSHIQKVIVTPTREISVQIKETVRKVAPTGART 110
Query: 180 SQLVVPDSFERN----KPITANIVVGTPGTVLDLIRRKMLNLGSIKVFVLDEADNMLDKQ 235
S V + + N K IV+GTPG + L++ +N+ + FVLDEAD ++D+
Sbjct: 111 SVYVGGSAHKLNLIDLKQTRPQIVIGTPGRIAQLVKLGAMNMSHVDFFVLDEADKLMDEV 170
Query: 236 GLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAKKIIPTAVSLELQKNEVNVSAIKQLF 295
D I + LP+ Q+ +FSAT+ + + A + ++V + IKQ
Sbjct: 171 FRDDINIIINS-LPQIRQVAVFSATYPRNLDNLLSTFLRDAALVRFNADDVQLFGIKQYV 229
Query: 296 M-DCDNEEHKYTILSELYGLLTIGSSIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQ 354
+ C K L+ + + +++F + LK G V+ + + +
Sbjct: 230 VAKCSPMLEK---LTHVLKSIRYVQALVFCDQISKCEPIATHLKSSGLDVTFVSSAMSQK 286
Query: 355 DRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXX 414
DR +D R R K+L+++++ ARGID +V++VVN D A+ TY H
Sbjct: 287 DRQLAVDQLRAKRVKILVSSDLTARGIDADNVNLVVNID------AAANEETYFHRIGRA 340
Query: 415 XXXXXXXVAISFIHDKKSFEVLSAIQKYFGDIEITKV 451
A++ + D+++ + +A+ Y G + + +V
Sbjct: 341 ARFGAHGAAVTLLEDERALKGFTAL-AYRGKVTVKRV 376
>SPAC30D11.03 [A] KOG0338 ATP-dependent RNA helicase
Length = 754
Score = 129 bits (323), Expect = 1e-29
Identities = 106/393 (26%), Positives = 187/393 (46%), Gaps = 37/393 (9%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRV---DPNVNSTQAICL 155
F+ P++IQ+K +PL + +++ + +G+GKTAAF + +L R+ V +T+ + L
Sbjct: 279 FEVPTQIQDKTIPLALLGK--DIVGAAVTGSGKTAAFIVPILERLLYRPKKVPTTRVLIL 336
Query: 156 SPARELARQTLEVIQEMGKFTKT-------SSQLVVPDSFERNKPITANIVVGTPGTVLD 208
P RELA Q V ++ FT L + + R +P +IV+ TPG +D
Sbjct: 337 CPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRKRP---DIVIATPGRFID 393
Query: 209 LIRRKM-LNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQ 267
+R + +I++ V+DEAD ML+ G D+ + + PK+ Q +LFSAT D V
Sbjct: 394 HMRNSQGFTVENIEIMVMDEADRMLE-DGFADELNEIIQACPKSRQTMLFSATMTDKVDD 452
Query: 268 YAKKIIPTAVSLELQKNEVNVSAIKQLFMDC--DNEEHKYTILSELYGLLTIGSSIIFVK 325
+ + V + + + + Q F+ E + +L L L +IIF +
Sbjct: 453 LIRLSLNRPVRVFVDNKKTTAKLLTQEFVRVRPQRELLRPAMLIYLCKELFHRRTIIFFR 512
Query: 326 TKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPS 385
+K A+ + + +HG L + R R ++DFR+G+ L+ T+V +RGIDI
Sbjct: 513 SKAFAHKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKCNYLLATDVASRGIDIKG 572
Query: 386 VSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYFG- 444
+ +V+NY+ P A Y+H AI+ + + +VL + K
Sbjct: 573 IEVVINYEAP------ATHEVYLHRVGRTARAGRSGRAIT-LAGEGDRKVLKGVFKNSSA 625
Query: 445 --------DIEITKVPT--DDLDEMETIVKKAL 467
+++ KV +++E+E +V+K L
Sbjct: 626 QNTKLVNRNLDFNKVEKFGKEIEELEPVVQKVL 658
>Hs20548087 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 344
Score = 129 bits (323), Expect = 1e-29
Identities = 84/266 (31%), Positives = 144/266 (53%), Gaps = 19/266 (7%)
Query: 95 YAMKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAIC 154
YA +KPS IQ++A+ IR + +I Q+QSGTGK A FS+++L +++ +V +TQA+
Sbjct: 93 YAYGSEKPSAIQQRAILPCIRG--YVVIVQAQSGTGKMATFSISILHQIELDVKATQALI 150
Query: 155 LSPARELARQTLEVIQEMGKFTKTSSQLVVPDS-----FERNKPITANIVVGTPGTVLDL 209
+V+ +G S + + ++ + +I+VGTPG V D+
Sbjct: 151 Q-----------KVVIALGDHMDASCHTCIGGTNVHAEVQKLQMEAPHIIVGTPGHVFDM 199
Query: 210 IRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYA 269
+ + L+ IK+FVLD+ D ML G DQ + + L Q+VL SAT V +
Sbjct: 200 LNWRYLSPKYIKMFVLDKTDEMLS-HGFKDQIYGIFQELNSNTQVVLPSATMPSDVLEVT 258
Query: 270 KKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQT 329
KK + + + ++K E+ + I Q +++ + EE K L +LY LTI ++IF+ T++
Sbjct: 259 KKFMREHIWILVKKEELTLEGICQFYINMEREEWKLDTLGDLYETLTIAQAVIFLNTRRK 318
Query: 330 ANLLYAKLKKEGHQVSILHGDLQSQD 355
A+ L K+ + VS +HGD+ ++
Sbjct: 319 ADWLTKKMHAQDFTVSAMHGDMDQKE 344
>At5g14610 [A] KOG0331 ATP-dependent RNA helicase
Length = 713
Score = 129 bits (323), Expect = 1e-29
Identities = 105/353 (29%), Positives = 174/353 (48%), Gaps = 34/353 (9%)
Query: 95 YAMKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQA-- 152
Y+ F PS IQ ++ P+ +++ +++A +++G+GKT + + + N ++
Sbjct: 245 YSAGFSAPSPIQAQSWPIAMQN--RDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGP 302
Query: 153 --ICLSPARELARQTLEVIQEMGKFTKTSSQLVV------PDSFERNKPITANIVVGTPG 204
+ LSP RELA Q + GK +K S + P E + + +IVV TPG
Sbjct: 303 TILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGV--DIVVATPG 360
Query: 205 TVLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDG 264
+ D++ K ++L + VLDEAD MLD G Q ++ +P Q ++++AT+
Sbjct: 361 RLNDILEMKRISLHQVSYLVLDEADRMLD-MGFEPQIRKIVNEVPTKRQTLMYTATWPKE 419
Query: 265 VRQYAKKII--PTAVSL----ELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIG 318
VR+ A ++ P V++ EL N+ I+ L K++ L ++ G
Sbjct: 420 VRKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLA-----PMEKHSRLEQILRSQEPG 474
Query: 319 SSII-FVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVL 377
S II F TK+ + L L + +I HGD +RD +++ FR GR+ VL+ T+V
Sbjct: 475 SKIIIFCSTKRMCDQLARNLTRTFGAAAI-HGDKSQAERDDVLNQFRSGRTPVLVATDVA 533
Query: 378 ARGIDIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDK 430
ARG+D+ + +VVNYD PNG D YVH +A +F D+
Sbjct: 534 ARGLDVKDIRVVVNYD---FPNGVED---YVHRIGRTGRAGATGLAYTFFGDQ 580
>7291960_2 [A] KOG0337 ATP-dependent RNA helicase
Length = 883
Score = 129 bits (323), Expect = 1e-29
Identities = 99/311 (31%), Positives = 159/311 (50%), Gaps = 18/311 (5%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTM---LTRVDPNVNSTQAICL 155
++ P+ IQ K +PL++ +++A +++G+GKTA F + + L R +P +A+ L
Sbjct: 115 YKVPTPIQRKTIPLILEG--RDVVAMAKTGSGKTACFLIPLFEKLQRREPT-KGARALIL 171
Query: 156 SPARELARQTLEVIQEMGKFTKTSSQLVVP----DSFERNKPITANIVVGTPGTVLDLIR 211
SP RELA QT + I+E+G+F + S LV+ DS +++V TPG L L
Sbjct: 172 SPTRELAVQTYKFIKELGRFMELKSILVLGGDSMDSQFSAIHTCPDVIVATPGRFLHLCV 231
Query: 212 RKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAKK 271
L L SI+ V DEAD + + G G+Q LP + Q V+FSAT + ++A+
Sbjct: 232 EMDLKLNSIEYVVFDEADRLFE-MGFGEQLNETLHRLPSSRQTVMFSATLPKLLVEFARA 290
Query: 272 II--PTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSEL--YGLLTIGSSIIFVKTK 327
+ P + L+++ + A+K L+ D+ +YT L L Y + +++F T+
Sbjct: 291 GLNDPVLIRLDVESKLPDALALKFLYCRPDD---RYTALVVLLKYVIPVQSQTVVFAGTQ 347
Query: 328 QTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVS 387
L+ L + G + ++ L R F + VLI T+V ARGIDIPS+
Sbjct: 348 HHVELISYILTEAGISNASVYSSLDPAARKINTAKFVNKKVSVLIVTDVAARGIDIPSLD 407
Query: 388 MVVNYDLPTLP 398
VVN P P
Sbjct: 408 FVVNLHFPGKP 418
>At3g06480 [A] KOG0331 ATP-dependent RNA helicase
Length = 1088
Score = 128 bits (322), Expect = 2e-29
Identities = 101/345 (29%), Positives = 171/345 (49%), Gaps = 26/345 (7%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTA-----AFSLTMLTRVDPNVNSTQAI 153
F P+ IQ + P+ ++ +++A +++G+GKT AF L R D N +
Sbjct: 455 FPSPTPIQAQTWPIALQS--RDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSR-NGPTVL 511
Query: 154 CLSPARELARQTLEVIQEMGKFTKTSSQLVV------PDSFERNKPITANIVVGTPGTVL 207
L+P RELA Q + G+ ++ S + P E + A+IVV TPG +
Sbjct: 512 ILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELERG--ADIVVATPGRLN 569
Query: 208 DLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQ 267
D++ KM++ + + VLDEAD MLD G Q ++ +P Q ++++AT+ VR+
Sbjct: 570 DILEMKMIDFQQVSLLVLDEADRMLD-MGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRK 628
Query: 268 YAKKIIPTAVSLELQK-NEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSS-IIFVK 325
A ++ V + + + +E+ + +++ + K L ++ GS IIF
Sbjct: 629 IASDLLVNPVQVNIGRVDELAANKAITQYVEVVPQMEKERRLEQILRSQERGSKVIIFCS 688
Query: 326 TKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPS 385
TK+ + L + + V ++HGD +RD +++ FR G+S VLI T+V ARG+DI
Sbjct: 689 TKRLCDHLARSVGRHFGAV-VIHGDKTQGERDWVLNQFRSGKSCVLIATDVAARGLDIKD 747
Query: 386 VSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDK 430
+ +V+NYD PT G D YVH VA +F ++
Sbjct: 748 IRVVINYDFPT---GVED---YVHRIGRTGRAGATGVAFTFFTEQ 786
>At2g47330 [A] KOG0339 ATP-dependent RNA helicase
Length = 748
Score = 128 bits (322), Expect = 2e-29
Identities = 96/309 (31%), Positives = 157/309 (50%), Gaps = 19/309 (6%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRV--DPNVNSTQA---I 153
++KP+ IQ +ALP+++ ++I +++G+GKTAAF L M+ + P + + +
Sbjct: 248 YEKPTAIQCQALPIVLSG--RDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGV 305
Query: 154 CLSPARELARQTLEVIQEMGKFTKTSSQLVVP-----DSFERNKPITAN--IVVGTPGTV 206
+P RELA Q + E KF+K V E+ K + A IVV TPG +
Sbjct: 306 ICAPTRELAHQ---IFLEAKKFSKAYGLRVSAVYGGMSKHEQFKELKAGCEIVVATPGRL 362
Query: 207 LDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVR 266
+D+++ K L + VLDEAD M D G Q + + Q +LFSAT V
Sbjct: 363 IDMLKMKALTMMRASYLVLDEADRMFDL-GFEPQVRSIVGQIRPDRQTLLFSATMPWKVE 421
Query: 267 QYAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYT-ILSELYGLLTIGSSIIFVK 325
+ A++I+ + + + + + I Q+ ++ K +L +L G++ G ++F
Sbjct: 422 KLAREILSDPIRVTVGEVGMANEDITQVVNVIPSDAEKLPWLLEKLPGMIDEGDVLVFAS 481
Query: 326 TKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPS 385
K T + + A+L +V+ LHGD R + F+ G VLI T+V ARG+DI S
Sbjct: 482 KKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGVHHVLIATDVAARGLDIKS 541
Query: 386 VSMVVNYDL 394
+ VVNYD+
Sbjct: 542 LKTVVNYDI 550
>7304081 [A] KOG0338 ATP-dependent RNA helicase
Length = 782
Score = 128 bits (322), Expect = 2e-29
Identities = 104/371 (28%), Positives = 176/371 (47%), Gaps = 26/371 (7%)
Query: 102 PSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVD----PNVNSTQAICLSP 157
P+ IQ +P+ + ++ + +GTGKTAA+ L L R+ N T+ + L P
Sbjct: 180 PTPIQASTIPVALLG--RDICGCAATGTGKTAAYMLPTLERLLYRPLNNKAITRVLVLVP 237
Query: 158 ARELARQTLEVIQEMGKFTKTSSQLVV-------PDSFERNKPITANIVVGTPGTVLDLI 210
REL Q +V +++ +FT L + ++ R P +IV+ TPG ++D I
Sbjct: 238 TRELGAQVYQVTKQLCQFTTIDVGLAIGGLDVKAQEAVLRQNP---DIVIATPGRLIDHI 294
Query: 211 RRK-MLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYA 269
+ L SI+V +LDEAD MLD+ +Q + KT Q +LFSAT + V+ A
Sbjct: 295 KNTPSFTLDSIEVLILDEADRMLDEY-FAEQMKEIINSCCKTRQTMLFSATMSEQVKDLA 353
Query: 270 KKIIPTAVSLELQKNEVNVSAIKQLFMDC--DNEEHKYTILSELYGLLTIGSSIIFVKTK 327
+ + + + N+ ++Q F+ D E + IL+ L ++FV+TK
Sbjct: 354 AVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLICRTFHDHCMVFVQTK 413
Query: 328 QTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVS 387
+ A+ L+ L G + LHG+L Q R + F+E + VLI T+V ARG+DI V
Sbjct: 414 KQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLIATDVAARGLDIVGVK 473
Query: 388 MVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYFGDIE 447
V+N+ +P Y+H +++S +K+ V I+ I+
Sbjct: 474 TVINFVMP------ITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDIIKNAESTIK 527
Query: 448 ITKVPTDDLDE 458
+P + +++
Sbjct: 528 NRIIPPEIIEK 538
>SPBP8B7.16c [A] KOG0331 ATP-dependent RNA helicase
Length = 550
Score = 128 bits (321), Expect = 2e-29
Identities = 96/364 (26%), Positives = 180/364 (49%), Gaps = 24/364 (6%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNV-----NSTQAI 153
F+ P+ IQ++A P+ + +M+ S +G+GKT ++ L + ++ + +
Sbjct: 142 FEAPTPIQQQAWPMAMSG--RDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVL 199
Query: 154 CLSPARELARQTLEVIQEMGKFTKTSSQLV---VPDSFERNKPITA-NIVVGTPGTVLDL 209
L+P RELA Q + + GK ++ + V VP + I I + TPG +LD+
Sbjct: 200 VLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGRLLDM 259
Query: 210 IRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYA 269
+ NL + VLDEAD MLD G Q ++ + Q V+FSAT+ V++ A
Sbjct: 260 LDSNKTNLRRVTYLVLDEADRMLD-MGFEPQIRKIVDQIRPDRQTVMFSATWPKEVQRLA 318
Query: 270 KKIIPTAVSLELQKNEVNVSA-IKQLFMDCDNEEHKYTILSELYGLLTIGSS--IIFVKT 326
+ + + + + ++ S IKQ+ DN + + + ++ +L + +IF T
Sbjct: 319 RDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGKDIEEVLKDRDNKVLIFTGT 378
Query: 327 KQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSV 386
K+ A+ + L+++G +HGD +RD ++++FR G+S +++ T+V +RGID+ +
Sbjct: 379 KRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGI 438
Query: 387 SMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFI---HDKKSFEVLSAIQKYF 443
+ V NYD P + YVH A ++ + K++ E++S + +
Sbjct: 439 THVFNYDFP------GNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQARELVSILSEAK 492
Query: 444 GDIE 447
DI+
Sbjct: 493 QDID 496
>SPBC17D1.06 [A] KOG0331 ATP-dependent RNA helicase
Length = 578
Score = 128 bits (321), Expect = 2e-29
Identities = 113/391 (28%), Positives = 184/391 (46%), Gaps = 36/391 (9%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAF---SLTMLTRVDPNVNSTQAICL 155
+++P+ IQ P L+ +++ +++G+GKT AF +L L + N + + + +
Sbjct: 185 YKEPTPIQAATWPYLLAG--RDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVV 242
Query: 156 SPARELARQTLEVIQEMGKFTKTSSQLV---VPDSFERNKPITANIVVGTPGTVLDLIRR 212
SP RELA QT E + + + T + +V P S + A++++GTPG +LDLI
Sbjct: 243 SPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQARAAKNASVIIGTPGRLLDLIND 302
Query: 213 KMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTC-----QLVLFSATFDDGVRQ 267
++ + VLDEAD MLD G + P Q V FSAT+ + VR
Sbjct: 303 GSIDCSQVGYLVLDEADRMLDT-GFEQDIRNIISHTPDPTRNGSRQTVFFSATWPESVRA 361
Query: 268 YAKKIIPTAVSLELQKNEVNVSA-IKQLFMDCDNEEHKYTILSELYGL-LTIGSS----I 321
A + V + + +E+ S I Q+ D+ K +L L L+ G +
Sbjct: 362 LAATFLKDPVKITIGSDELAASQNITQIVEILDDPRSKERMLDNLLRKHLSSGGKDDKIL 421
Query: 322 IFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGI 381
IFV K+ A + L ++ + V I HGD+ R + ++DF+ G+ VL+ T+V ARG+
Sbjct: 422 IFVLYKKEAARVEGTLARKYNVVGI-HGDMSQGARLQALNDFKSGKCPVLVATDVAARGL 480
Query: 382 DIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFI--HDKK-SFEVLSA 438
DIP V +V+N P YVH AI+F DK + E+++
Sbjct: 481 DIPKVQLVINVTFP------LTIEDYVHRIGRTGRANTKGTAITFFTPQDKSHAGELVNV 534
Query: 439 IQKYFGDIEITKVPTDDLDEMETIVKKALKA 469
+++ DI + L + T VK L A
Sbjct: 535 LRQAKQDI------PEGLFKFGTAVKPKLNA 559
>CE00337 [A] KOG0330 ATP-dependent RNA helicase
Length = 489
Score = 128 bits (321), Expect = 2e-29
Identities = 94/347 (27%), Positives = 173/347 (49%), Gaps = 17/347 (4%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICLSPA 158
+ KPSKIQ+ ALP ++ ++I +++G+GKT AF++ +L + + + + L+P
Sbjct: 64 WMKPSKIQQAALPHALQGK--DVIGLAETGSGKTGAFAIPVLQSLLDHPQAFFCLVLTPT 121
Query: 159 RELARQTLEVIQEMGKFTKTSSQLVVPDSFERNKPITA----NIVVGTPGTVLD-LIRRK 213
RELA Q + + +G + ++V + + +I+V TPG ++D L K
Sbjct: 122 RELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALARRPHIIVATPGRLVDHLENTK 181
Query: 214 MLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAKKII 273
NL ++K ++DEAD +L+ + ++ K +P+ + LFSAT V + + +
Sbjct: 182 GFNLKALKFLIMDEADRILNMD-FEVELDKILKVIPRERRTYLFSATMTKKVSKLERASL 240
Query: 274 PTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQTANLL 333
+ + V +KQ ++ N+ +K T L L S+I+F T T +
Sbjct: 241 RDPARVSVSSRYKTVDNLKQHYIFVPNK-YKETYLVYLLNEHAGNSAIVFCATCATTMQI 299
Query: 334 YAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVNYD 393
L++ G Q LHG + + R ++ F+ ++L+ T+V ARG+DIP V MV+NYD
Sbjct: 300 AVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILVCTDVAARGLDIPHVDMVINYD 359
Query: 394 LPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFI--HDKKSFEVLSA 438
+P + YVH +AI+ + +D ++++ + A
Sbjct: 360 MP------SQSKDYVHRVGRTARAGRSGIAITVVTQYDVEAYQKIEA 400
>CE22474 [A] KOG0336 ATP-dependent RNA helicase
Length = 504
Score = 127 bits (320), Expect = 3e-29
Identities = 112/368 (30%), Positives = 173/368 (46%), Gaps = 42/368 (11%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQ------- 151
F+KPS IQ + PLL+ + I SQ+G+GKT AF L L +D + +
Sbjct: 104 FEKPSPIQSQMWPLLLSG--QDCIGVSQTGSGKTLAFLLPALLHIDAQLAQYEKNDEEQK 161
Query: 152 ----AICLSPARELARQTLEVIQEMGKFTKTSSQLVV-------PDSFERNKPITANIVV 200
+ LSP RELA+Q + E+ K++ + V P+ E + IV+
Sbjct: 162 PSPFVLVLSPTRELAQQ---IEGEVKKYSYNGYKSVCLYGGGSRPEQVEACRG-GVEIVI 217
Query: 201 GTPGTVLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLG-DQCIRVKKFLPKTCQLV-LFS 258
TPG + DL +++L S+ VLDEAD MLD +G + IR F + +LV L S
Sbjct: 218 ATPGRLTDLSNDGVISLASVTYVVLDEADRMLD---MGFEVAIRRILFEIRPDRLVALTS 274
Query: 259 ATFDDGVRQYAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIG 318
AT+ +GVR+ K AV ++ F + + ++ + E+ LT
Sbjct: 275 ATWPEGVRKLTDKYTKEAVMAVNGSLDLTSCKSVTQFFEFVPHDSRFLRVCEIVNFLTAA 334
Query: 319 SS-----IIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLIT 373
IIFVK+K A+ L + +G LHG DR+ ++ R G ++L+
Sbjct: 335 HGQNYKMIIFVKSKVMADHLSSDFCMKGINSQGLHGGRSQSDREMSLNMLRSGEVQILVA 394
Query: 374 TNVLARGIDIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFI--HDKK 431
T++ +RGID+P ++ V+NYD P D YVH A+SF+ +D+
Sbjct: 395 TDLASRGIDVPDITHVLNYDFP------MDIEEYVHRVGRTGRAGRKGEAMSFLWWNDRS 448
Query: 432 SFEVLSAI 439
+FE L I
Sbjct: 449 NFEGLIQI 456
>YNL112w [A] KOG0331 ATP-dependent RNA helicase
Length = 546
Score = 127 bits (319), Expect = 4e-29
Identities = 92/345 (26%), Positives = 168/345 (48%), Gaps = 23/345 (6%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNV-----NSTQAI 153
F KP+ IQ + P+ + +M+ + +G+GKT ++ L + ++ + +
Sbjct: 133 FDKPTGIQCQGWPMALSG--RDMVGIAATGSGKTLSYCLPGIVHINAQPLLAPGDGPIVL 190
Query: 154 CLSPARELARQTLEVIQEMGKFTKTSSQLV---VPDSFE-RNKPITANIVVGTPGTVLDL 209
L+P RELA Q + G ++ + V VP S + R+ + IV+ TPG ++D+
Sbjct: 191 VLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDLSRGSEIVIATPGRLIDM 250
Query: 210 IRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYA 269
+ NL + VLDEAD MLD G Q ++ + Q +++SAT+ V+Q A
Sbjct: 251 LEIGKTNLKRVTYLVLDEADRMLD-MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLA 309
Query: 270 KKIIPTAVSLELQKNEV----NVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVK 325
+ + +++ E+ N++ I ++ D + + L E ++IF
Sbjct: 310 ADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKYL-ETASQDNEYKTLIFAS 368
Query: 326 TKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPS 385
TK+ + + L+++G +HGD ++RD ++ +FR GRS +++ T+V ARGID+
Sbjct: 369 TKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAARGIDVKG 428
Query: 386 VSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDK 430
++ V+NYD+P + YVH AISF ++
Sbjct: 429 INYVINYDMP------GNIEDYVHRIGRTGRAGATGTAISFFTEQ 467
>Hs13775232 [A] KOG0331 ATP-dependent RNA helicase
Length = 580
Score = 127 bits (319), Expect = 4e-29
Identities = 89/309 (28%), Positives = 162/309 (51%), Gaps = 18/309 (5%)
Query: 99 FQKPSKIQEKALP--LLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICLS 156
++ P+ IQ + +P LL RD ++A + +G+GKTAAF L ++ R + A+ L+
Sbjct: 223 YEVPTPIQMQMIPVGLLGRD----ILASADTGSGKTAAFLLPVIMRALFESKTPSALILT 278
Query: 157 PARELARQTLEVIQE-MGKFTKTSSQLVV------PDSFERNKPITANIVVGTPGTVLDL 209
P RELA Q +E M + + L+V P + + + +++ TPG +LD+
Sbjct: 279 PTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRLQQHV--KVIIATPGRLLDI 336
Query: 210 IRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYA 269
I++ + L +K+ V+DEAD ML K G Q + + + +P CQ +L SAT + Q A
Sbjct: 337 IKQSSVELCGVKIVVVDEADTML-KMGFQQQVLDILENIPNDCQTILVSATIPTSIEQLA 395
Query: 270 KKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSI-IFVKTKQ 328
+++ V + + + + ++Q+ + ++ K + L + +FV K
Sbjct: 396 SQLLHNPVRIITGEKNLPCANVRQIILWVEDPAKKKKLFEILNDKKLFKPPVLVFVDCKL 455
Query: 329 TANLLYAKLKKEGHQVSI-LHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVS 387
A+LL ++K SI +H + +R ++ EG +V+++T VL RG+D+ SV
Sbjct: 456 GADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEVVVSTGVLGRGLDLISVR 515
Query: 388 MVVNYDLPT 396
+VVN+D+P+
Sbjct: 516 LVVNFDMPS 524
>At1g31970 [A] KOG0331 ATP-dependent RNA helicase
Length = 537
Score = 127 bits (319), Expect = 4e-29
Identities = 103/318 (32%), Positives = 156/318 (48%), Gaps = 28/318 (8%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRV----------DPNVN 148
F+KPS IQ P L+ ++I +++G+GKT AF + + V VN
Sbjct: 134 FEKPSPIQSHTWPFLLDG--RDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVN 191
Query: 149 STQAICLSPARELARQTLEVIQEMGKFTKTSSQLVVPDSFERNKPITA-----NIVVGTP 203
T + LSP RELA Q +V++E G+ S V S + I+A +IV+GTP
Sbjct: 192 PT-CLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGS-SKGPQISAIRSGVDIVIGTP 249
Query: 204 GTVLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDD 263
G + DLI +L L + VLDEAD MLD G + + K Q+V+FSAT+
Sbjct: 250 GRLRDLIESNVLRLSDVSFVVLDEADRMLD-MGFEEPVRFILSNTNKVRQMVMFSATWPL 308
Query: 264 GVRQYAKKII---PTAV---SLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTI 317
V + A++ + P V S++L N + I+ L D + + L E Y
Sbjct: 309 DVHKLAQEFMDPNPIKVIIGSVDLAANHDVMQIIEVL--DERARDQRLIALLEKYHKSQK 366
Query: 318 GSSIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVL 377
++F K A L L++ G + +HG+ +R R + F+EG +L+ T+V
Sbjct: 367 NRVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVA 426
Query: 378 ARGIDIPSVSMVVNYDLP 395
ARG+DIP V +V+NY P
Sbjct: 427 ARGLDIPDVEVVINYTFP 444
>Hs22057246 [A] KOG0336 ATP-dependent RNA helicase
Length = 631
Score = 127 bits (318), Expect = 5e-29
Identities = 98/345 (28%), Positives = 165/345 (47%), Gaps = 25/345 (7%)
Query: 101 KPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNV------NSTQAIC 154
KP+ IQ +A P++++ ++I +Q+GTGKT ++ + +D N +
Sbjct: 244 KPTPIQSQAWPIILQGI--DLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLV 301
Query: 155 LSPARELARQTLEVIQEMGKFT-KTSSQLVVPDSFERNKPIT-----ANIVVGTPGTVLD 208
L+P RELA L V E K++ K + + RN I +I++ TPG + D
Sbjct: 302 LTPTRELA---LHVEAECSKYSYKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLND 358
Query: 209 LIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQY 268
L +NL SI V+DEAD MLD + Q ++ + Q V+ SAT+ D VRQ
Sbjct: 359 LQMNNSVNLRSITYLVIDEADKMLDME-FEPQIRKILLDVRPDRQTVMTSATWPDTVRQL 417
Query: 269 AKKIIPTAVSLELQK-NEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTK 327
A + + + + N V V+ +KQ + +E + + + I+FV K
Sbjct: 418 ALSYLKDPMIVYVGNLNLVAVNTVKQNIIVTTEKEKRALTQEFVENMSPNDKVIMFVSQK 477
Query: 328 QTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVS 387
A+ L + +G LHG+ + D++R ++DF+ G K+LITT++++RG+D+ V+
Sbjct: 478 HIADDLSSDFNIQGISAESLHGNSEQSDQERAVEDFKSGNIKILITTDIVSRGLDLNDVT 537
Query: 388 MVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKS 432
V NYD P + YVH +++ I + S
Sbjct: 538 HVYNYDFP------RNIDVYVHRVGYIGRTGKTGTSVTLITQRDS 576
>7298752 [A] KOG0330 ATP-dependent RNA helicase
Length = 507
Score = 126 bits (316), Expect = 8e-29
Identities = 102/376 (27%), Positives = 180/376 (47%), Gaps = 17/376 (4%)
Query: 97 MKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICLS 156
+K++ PSKIQ +A+P+ ++ ++I +++G+GKT AF+L +L + N A+ L+
Sbjct: 79 LKWKAPSKIQREAIPVALQGK--DVIGLAETGSGKTGAFALPILHALLENPQRYFALVLT 136
Query: 157 PARELARQTLEVIQEMGKFTKTSSQLVVP--DSFERNKPITA--NIVVGTPGTVLD-LIR 211
P RELA Q E + +G +VV D + + +I++ TPG ++D L
Sbjct: 137 PTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLEN 196
Query: 212 RKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAKK 271
K NL +IK V+DEAD +L+ + ++ K LP+ + LFSAT V++ +
Sbjct: 197 MKGFNLKAIKYLVMDEADRILNMD-FEVELDKILKVLPRERRTFLFSATMTKKVKKLQRA 255
Query: 272 IIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQTAN 331
+ V +E+ V ++Q ++ ++K L + L S +IF T
Sbjct: 256 SLKDPVKVEVSNKYQTVEQLQQSYLFIP-VKYKDVYLVHILNELAGNSFMIFCSTCNNTV 314
Query: 332 LLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVN 391
L+ G LHG + R ++ F+ +LI+T+V +RG+DIP V +VVN
Sbjct: 315 KTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVN 374
Query: 392 YDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYFG-DIEITK 450
+D+PT Y+H AI+ + + E+ I+ G + + K
Sbjct: 375 FDIPT------HSKDYIHRVGRTARAGRSGKAITLV-SQYDIELYQRIEHLLGKQLTLYK 427
Query: 451 VPTDDLDEMETIVKKA 466
D++ ++ V +A
Sbjct: 428 CEEDEVMALQERVAEA 443
>CE18785 [A] KOG0331 ATP-dependent RNA helicase
Length = 561
Score = 125 bits (314), Expect = 1e-28
Identities = 96/324 (29%), Positives = 156/324 (47%), Gaps = 21/324 (6%)
Query: 98 KFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQA----- 152
KFQKP+ IQ + P+ + ++I+ +++G+GKT AF L L + + +
Sbjct: 148 KFQKPTVIQSISWPIAMSG--RDIISIAKTGSGKTLAFMLPALVHITKQAHRQRGEGPAV 205
Query: 153 ICLSPARELARQTLEVIQEMGKFTKTSSQLVVPDSFE----RNKPITANIVVGTPGTVLD 208
+ L P RELA+Q EV + + + + R+ +IVV TPG +LD
Sbjct: 206 LVLLPTRELAQQVQEVSIDFCHSLGLKMTCLFGGASKGPQARDLERGVDIVVATPGRLLD 265
Query: 209 LIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQY 268
+ N+ VLDEAD MLD G Q ++ + Q ++FSAT+ VR
Sbjct: 266 FLDNGTTNMKKCSYLVLDEADRMLD-MGFEPQIKKIIGQIRPDRQTLMFSATWPKEVRAL 324
Query: 269 AKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGS---SIIFVK 325
A A L + E+ + +D E K L EL + +IIFV+
Sbjct: 325 ASDFQKDAAFLNVGSLELAANHNITQVVDILEEHAKQAKLMELLNHIMNQKECKTIIFVE 384
Query: 326 TKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPS 385
TK+ A+ L ++++G +HGD +RD ++ +F+ G++ +++ T+V ARG+D+
Sbjct: 385 TKRKADELTRAMRRDGWPTLCIHGDKNQGERDWVLQEFKAGKTPIMLATDVAARGLDVDD 444
Query: 386 VSMVVNYDLPTLPNGQADPSTYVH 409
+ V+NYD PN D YVH
Sbjct: 445 IKFVINYD---YPNNSED---YVH 462
>CE25121 [A] KOG0335 ATP-dependent RNA helicase
Length = 763
Score = 125 bits (313), Expect = 2e-28
Identities = 107/364 (29%), Positives = 169/364 (46%), Gaps = 45/364 (12%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRV--DPNVNST------ 150
+ K + IQ+ ALPL+ + ++++A +Q+G+GKTAAF L ++TR+ D N+N+
Sbjct: 361 YSKTTPIQQYALPLVHQG--YDIMACAQTGSGKTAAFLLPIMTRLIDDNNLNTAGEGGCY 418
Query: 151 -QAICLSPARELARQTLEVIQEMGKFTKTSSQLVVPD----SFERNKPIT---ANIVVGT 202
+ I L+P RELA Q + E KF + + P + NK A I+VGT
Sbjct: 419 PRCIILTPTRELADQ---IYNEGRKFAYQTMMEIKPVYGGLAVGYNKGQIEKGATIIVGT 475
Query: 203 PGTVLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKF--LPK--TCQLVLFS 258
G + + L + FVLDEAD M+D G G + + +P+ Q ++FS
Sbjct: 476 VGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIETIVNYDSMPRKENRQTLMFS 535
Query: 259 ATFDDGVRQYAKKII-PTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGL--- 314
ATF D V++ A+ + V + + K + Q F C+ E K +L EL G+
Sbjct: 536 ATFPDSVQEAARAFLRENYVMIAIDKIGAANKCVLQEFERCERSEKKDKLL-ELLGIDID 594
Query: 315 ---------LTIGSSIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFRE 365
+ +++FV + A+ L + L +HG + ++R + FR
Sbjct: 595 SYTTEKSAEVYTKKTMVFVSQRAMADTLASILSSAQVPAITIHGAREQRERSEALRQFRN 654
Query: 366 GRSKVLITTNVLARGIDIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAIS 425
G VLI T V RG+DI V V+NYD+P + Y+H A S
Sbjct: 655 GSKPVLIATAVAERGLDIKGVDHVINYDMPD------NIDDYIHRIGRTGRVGNSGRATS 708
Query: 426 FIHD 429
FI +
Sbjct: 709 FISE 712
>Hs19743937 [A] KOG0338 ATP-dependent RNA helicase
Length = 796
Score = 124 bits (312), Expect = 2e-28
Identities = 95/312 (30%), Positives = 159/312 (50%), Gaps = 17/312 (5%)
Query: 96 AMKFQKPSKIQEKALP--LLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRV---DPNVNST 150
AM F++P+ IQ+ +P LL +D + A + +GTGKTAAF+L +L R+ T
Sbjct: 235 AMGFKQPTPIQKACIPVGLLGKD----ICACAATGTGKTAAFALPVLERLIYKPRQAPVT 290
Query: 151 QAICLSPARELARQTLEVIQEMGKFTKTSSQLVVPD----SFERNKPITANIVVGTPGTV 206
+ + L P REL Q V +++ +F ++ L V S E +I++ TPG +
Sbjct: 291 RVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAPDILIATPGRL 350
Query: 207 LDLIRR-KMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGV 265
+D + +L SI+V +LDEAD MLD+ +Q + + Q +LFSAT D V
Sbjct: 351 IDHLHNCPSFHLSSIEVLILDEADRMLDEY-FEEQMKEIIRMCSHHRQTMLFSATMTDEV 409
Query: 266 RQYAKKIIPTAVSLELQKNEVNVSAIKQLFMDC--DNEEHKYTILSELYGLLTIGSSIIF 323
+ A + V + + N ++Q F+ + E + I++ L ++F
Sbjct: 410 KDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRTFTDHVMLF 469
Query: 324 VKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDI 383
+TK+ A+ ++ L G QV LHG+L R + F++ + +L+ T+V ARG+DI
Sbjct: 470 TQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDI 529
Query: 384 PSVSMVVNYDLP 395
V V+N+ +P
Sbjct: 530 EGVKTVINFTMP 541
>YDR243c [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 588
Score = 124 bits (311), Expect = 3e-28
Identities = 97/373 (26%), Positives = 174/373 (46%), Gaps = 35/373 (9%)
Query: 97 MKFQKPSKIQEKALPLLIRDPPH-NMIAQSQSGTGKTAAFSLTMLTRVDPN--------- 146
++F P+ IQ +P + + + + + +G+GKT AF + +L ++ +
Sbjct: 192 LRFPSPTPIQRITIPNVCNMKQYRDFLGVASTGSGKTLAFVIPILIKMSRSPPRPPSLKI 251
Query: 147 VNSTQAICLSPARELARQTLEVIQEMGKFTKTSSQ-------LVVPDSFER---NKPITA 196
++ +A+ L+P REL +Q + Q++ K S +V S E +
Sbjct: 252 IDGPKALILAPTRELVQQIQKETQKVTKIWSKESNYDCKVISIVGGHSLEEISFSLSEGC 311
Query: 197 NIVVGTPGTVLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTC---- 252
+I+V TPG ++D + +L + ++ VLDEAD M+D G DQ + +
Sbjct: 312 DILVATPGRLIDSLENHLLVMKQVETLVLDEADKMIDL-GFEDQVTNILTKVDINADSAV 370
Query: 253 --QLVLFSATFDDGVRQYAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSE 310
Q ++F+AT + + A + V + + I+Q+ DN+E K+ L
Sbjct: 371 NRQTLMFTATMTPVIEKIAAGYMQKPVYATIGVETGSEPLIQQVVEYADNDEDKFKKLKP 430
Query: 311 LYGLLTIGSSIIFVKTKQTANLLYAKLKKEGH-QVSILHGDLQSQDRDRLIDDFREGRSK 369
+ IIF+ KQTA+ L K +KE + +V+ILHG + R+ + FR + +
Sbjct: 431 IVAKYD-PPIIIFINYKQTADWLAEKFQKETNMKVTILHGSKSQEQREHSLQLFRTNKVQ 489
Query: 370 VLITTNVLARGIDIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHD 429
++I TNV ARG+DIP+VS+VVN+ + Y+H A+SF+
Sbjct: 490 IMIATNVAARGLDIPNVSLVVNFQI------SKKMDDYIHRIGRTGRAANEGTAVSFVSA 543
Query: 430 KKSFEVLSAIQKY 442
+ ++ + KY
Sbjct: 544 AEDESLIRELYKY 556
>Hs13787209 [A] KOG0331 ATP-dependent RNA helicase
Length = 715
Score = 124 bits (310), Expect = 4e-28
Identities = 100/343 (29%), Positives = 166/343 (48%), Gaps = 33/343 (9%)
Query: 120 NMIAQSQSGTGKTAAFSLTMLTRVDPNVN------STQAICLSPARELARQTLEVIQEMG 173
++IAQ+++GTGKT +F++ ++ ++ + + Q + L+P RELA Q + ++
Sbjct: 157 DLIAQARTGTGKTFSFAIPLIEKLHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDIT 216
Query: 174 KFTKTS---SQLVVPDSFERNKPITANIVVGTPGTVLDLIRRKMLNLGSIKVFVLDEADN 230
K + FER + +I+VGTPG + D I+ L+L +K VLDE D
Sbjct: 217 KKLSVACFYGGTPYGGQFERMRN-GIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQ 275
Query: 231 MLDKQGLGDQC-----IRVKKFLPKTCQLVLFSATFDDGVRQYAKKIIPTA---VSLELQ 282
MLD G DQ + KK Q +LFSAT V AKK + + V L +
Sbjct: 276 MLD-MGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGK 334
Query: 283 KNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLT--IGSSIIFVKTKQTANLLY--AKLK 338
K + ++ L + C + + ++ ++ + + G +IIF +TK+ A L + +K
Sbjct: 335 KTQKTAITVEHLAIKC-HWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIK 393
Query: 339 KEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVNYDLPTLP 398
++ LHGD+ + R+ + FR G VL+ TNV ARG+DIP V +V+ P
Sbjct: 394 QDAQS---LHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPP--- 447
Query: 399 NGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQK 441
D +Y+H V I F K+ ++++ QK
Sbjct: 448 ---KDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQK 487
>CE09012 [A] KOG0335 ATP-dependent RNA helicase
Length = 974
Score = 124 bits (310), Expect = 4e-28
Identities = 110/382 (28%), Positives = 172/382 (44%), Gaps = 47/382 (12%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTR-VDPNVNST------- 150
+ K + IQ+ LPL+ + H+++A +Q+G+GKTAAF L ++ R +D N +T
Sbjct: 572 YTKTTPIQQYTLPLIHQG--HDIMACAQTGSGKTAAFLLPIMARLIDENDLNTAGEGGCY 629
Query: 151 -QAICLSPARELARQTLEVIQEMGKFTKTSSQLVVPD----SFERNKPIT---ANIVVGT 202
+ I L+P REL Q + E KF + + P + NK A I+VGT
Sbjct: 630 PRCIILTPTRELTDQ---IYNEGRKFAYQTMMEIRPVYGGLAVGYNKGQIEKGATIIVGT 686
Query: 203 PGTVLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKF--LPK--TCQLVLFS 258
G + + L + FVLDEAD M+D G G + + +PK Q ++FS
Sbjct: 687 VGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIDTIVNYESMPKKENRQTLMFS 746
Query: 259 ATFDDGVRQYAKKIIPTA-VSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGL--- 314
ATF D V++ A+ + + L + K + Q F CD E K +L E+ G+
Sbjct: 747 ATFPDSVQEAARNHLKEGYIMLAIDKIGAANKCVLQEFEKCDRSEKKDKLL-EILGIDID 805
Query: 315 ---------LTIGSSIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFRE 365
+ +I+FV + A+ L + L +HG + ++R + FR
Sbjct: 806 SYTTEKNSEVYTKKTIVFVSQRAMADTLASILSSAQVPAITIHGAREQRERSEALRQFRN 865
Query: 366 GRSKVLITTNVLARGIDIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAIS 425
G VLI T V RG+DI V V+NYD+P + Y+H A S
Sbjct: 866 GSKPVLIATAVAERGLDIKGVDHVINYDMPD------NIDDYIHRIGRTGRVGNAGRATS 919
Query: 426 FIHDKKSFEVLSAIQKYFGDIE 447
FI + +LS + + D +
Sbjct: 920 FI--SEDCNLLSELVRVLSDAD 939
>YGL171w [A] KOG0344 ATP-dependent RNA helicase
Length = 564
Score = 123 bits (309), Expect = 5e-28
Identities = 94/351 (26%), Positives = 170/351 (47%), Gaps = 22/351 (6%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRV--DPNVNSTQAICLS 156
F +P+ IQ + +P+ + + +++A +G+GKT AF + ++ ++ D + + +S
Sbjct: 142 FTEPTPIQCECIPVALNN--RDVLACGPTGSGKTLAFLIPLVQQIIDDKQTAGLKGLIIS 199
Query: 157 PARELARQT-LEVIQEMGK-FTKTSSQLVVP------DSFERNKPITA---NIVVGTPGT 205
P +ELA Q +E + K F + L V + +NK ++ +I++ TP
Sbjct: 200 PTKELANQIFIECFKLSYKIFLEKKRPLQVALLSKSLGAKLKNKVVSDKKYDIIISTPLR 259
Query: 206 VLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGV 265
++D+++ + L+L +K + DEAD + DK + + + + +FSAT V
Sbjct: 260 LIDVVKNEALDLSKVKHLIFDEADKLFDKTFVEQSDDILSACREPSLRKAMFSATIPSNV 319
Query: 266 RQYAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSII-FV 324
+ A+ I+ V + + E + I+Q + C NEE K + +L II F+
Sbjct: 320 EEIAQSIMMDPVRVIIGHKEAANTNIEQKLIFCGNEEGKLIAIRQLVQEGEFKPPIIIFL 379
Query: 325 KTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIP 384
++ A LY +L + V ++H + + RDR+I+ F+ G LI T+VLARGID
Sbjct: 380 ESITRAKALYHELMYDRINVDVIHAERTALQRDRIIERFKTGELWCLICTDVLARGIDFK 439
Query: 385 SVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEV 435
V++V+NYD+P YVH AI+F + S +
Sbjct: 440 GVNLVINYDVP------GSSQAYVHRIGRTGRGGRSGKAITFYTKQDSVAI 484
>Hs10346129 [A] KOG0336 ATP-dependent RNA helicase
Length = 648
Score = 123 bits (308), Expect = 7e-28
Identities = 93/310 (30%), Positives = 161/310 (51%), Gaps = 19/310 (6%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAF------SLTMLTRVDPNVNSTQA 152
FQKP+ IQ +A P++++ ++I +Q+GTGKT + L + + N
Sbjct: 262 FQKPTPIQSQAWPIVLQGI--DLIGVAQTGTGKTLCYLMPGFIHLVLQPSLKGQRNRPGM 319
Query: 153 ICLSPARELARQTLEVIQEMGKFT-KTSSQLVVPDSFERNKPIT-----ANIVVGTPGTV 206
+ L+P RELA L+V E K++ K + V R++ I +I++ TPG +
Sbjct: 320 LVLTPTRELA---LQVEGECCKYSYKGLRSVCVYGGGNRDEQIEELKKGVDIIIATPGRL 376
Query: 207 LDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVR 266
DL +NL +I VLDEAD MLD G Q +++ + Q V+ SAT+ V
Sbjct: 377 NDLQMSNFVNLKNITYLVLDEADKMLD-MGFEPQIMKILLDVRPDRQTVMTSATWPHSVH 435
Query: 267 QYAKKIIPTAVSLELQKNE-VNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVK 325
+ A+ + + + + + V VS++KQ + EE + + L + + I+FV
Sbjct: 436 RLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMQTFLQSMSSTDKVIVFVS 495
Query: 326 TKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPS 385
K A+ L + L V LHGD + +DR++ +++F+ G+ ++LI T++ +RG+D+
Sbjct: 496 RKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVRILIATDLASRGLDVHD 555
Query: 386 VSMVVNYDLP 395
V+ V N+D P
Sbjct: 556 VTHVYNFDFP 565
>At3g58510 [A] KOG0335 ATP-dependent RNA helicase
Length = 603
Score = 123 bits (308), Expect = 7e-28
Identities = 100/356 (28%), Positives = 172/356 (48%), Gaps = 38/356 (10%)
Query: 98 KFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRV--DPNVNSTQ---- 151
K+ +P+ +Q A+P+L+ + +++A +Q+G+GKTAAF +++ + D +V +
Sbjct: 170 KYVRPTPVQRHAIPILLAE--RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRA 227
Query: 152 ----AICLSPARELARQTLEVIQEMGKFT-KTSSQLVVPDSFE------RNKPITANIVV 200
A+ LSP RELA Q + E KF+ +T ++VV R +I+V
Sbjct: 228 VYPFAVILSPTRELACQ---IHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILV 284
Query: 201 GTPGTVLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPK----TCQLVL 256
TPG + DL+ R +++ I+ LDEAD MLD G Q ++ + + Q +L
Sbjct: 285 ATPGRLNDLLERARVSMQMIRFLALDEADRMLD-MGFEPQIRKIVEQMDMPPRGVRQTML 343
Query: 257 FSATFDDGVRQYAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLT 316
FSATF +++ A + + L + + + I Q + + ++ L+
Sbjct: 344 FSATFPSQIQRLAADFMSNYIFLAVGRVGSSTDLITQRVEFVQESDKRSHLMDLLHAQRE 403
Query: 317 IGSSIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNV 376
KTK+ A+ L L + +HGD Q+R+ + F+ GR+ +L+ T+V
Sbjct: 404 TQD-----KTKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPILVATDV 458
Query: 377 LARGIDIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKS 432
ARG+DIP V+ VVN+DLP D YVH +A +F ++ +
Sbjct: 459 AARGLDIPHVAHVVNFDLPN------DIDDYVHRIGRTGRAGKSGIATAFFNENNA 508
>At5g60990 [A] KOG0330 ATP-dependent RNA helicase
Length = 454
Score = 122 bits (307), Expect = 9e-28
Identities = 102/386 (26%), Positives = 182/386 (46%), Gaps = 28/386 (7%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQ------- 151
++ PSKIQ +ALP + ++I +Q+G+GKT AF++ +L + V ++
Sbjct: 29 WKNPSKIQAEALPFALEGK--DVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKGRRP 86
Query: 152 -----AICLSPARELARQTLEVIQEMGKFTKTSSQLVVP--DSFERNKPITANIVVGTPG 204
A LSP RELA Q E + +G ++V D ++ + V TPG
Sbjct: 87 DPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRMQQTIALGKRPHVATPG 146
Query: 205 TVLD-LIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDD 263
+ D + K +L S+K VLDEAD +L++ ++ + +P + LFSAT
Sbjct: 147 RLWDHMSDTKGFSLKSLKYLVLDEADRLLNED-FEKSLNQILEEIPLERKTFLFSATMTK 205
Query: 264 GVRQYAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIF 323
VR+ + + V +E V +KQ + ++K L + + +S+IF
Sbjct: 206 KVRKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVA-AKYKDCYLVYILSEMPESTSMIF 264
Query: 324 VKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDI 383
+T L L+ G + + G + R ++ F+ G +L+ T+V +RG+DI
Sbjct: 265 TRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFKAGECNILVCTDVASRGLDI 324
Query: 384 PSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYF 443
PSV +V+NYD+PT + Y+H V IS + ++ E I+K
Sbjct: 325 PSVDVVINYDIPT------NSKDYIHRVGRTARAGRSGVGISLV-NQYELEWYIQIEKLI 377
Query: 444 GDIEITKVPTDDLDEMETIVKKALKA 469
G ++ + P ++ DE+ +++++ +A
Sbjct: 378 GK-KLPEYPAEE-DEVLSLLERVAEA 401
>YBR237w [A] KOG0334 RNA helicase
Length = 849
Score = 122 bits (306), Expect = 1e-27
Identities = 108/413 (26%), Positives = 189/413 (45%), Gaps = 55/413 (13%)
Query: 97 MKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRV------DPNVNST 150
+ F + IQ +ALP ++ ++I S++G+GKT ++ L +L +V +
Sbjct: 274 LHFGSLTPIQSQALPAIMSG--RDVIGISKTGSGKTISYLLPLLRQVKAQRPLSKHETGP 331
Query: 151 QAICLSPARELARQTLEVIQEMGKFTKTSSQL---VVPDSFERNKPIT-----ANIVVGT 202
+ L+P RELA L++ +E+ KFT+ + + E K IT IVV T
Sbjct: 332 MGLILAPTRELA---LQIHEEVTKFTEADTSIRSVCCTGGSEMKKQITDLKRGTEIVVAT 388
Query: 203 PGTVLDLIRR---KMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSA 259
PG +D++ K+L+ I V+DEAD + D G Q ++ K + Q VLFSA
Sbjct: 389 PGRFIDILTLNDGKLLSTKRITFVVMDEADRLFDL-GFEPQITQIMKTVRPDKQCVLFSA 447
Query: 260 TFDDGVRQYAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTIL-------SELY 312
TF + +R +A +++ + +S+ + + +KQ F C +E+ K+ L SE +
Sbjct: 448 TFPNKLRSFAVRVLHSPISITINSKGMVNENVKQKFRICHSEDEKFDNLVQLIHERSEFF 507
Query: 313 GLLTI-------------GSSIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRL 359
+ +IIFV ++ + + KL G +H Q+R
Sbjct: 508 DEVQSENDGQSSDVEEVDAKAIIFVSSQNICDFISKKLLNAGIVTCAIHAGKPYQERLMN 567
Query: 360 IDDFREGRSKVLITTNVLARGIDIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXX 419
++ F+ ++ +L+ T VL+RG+++P VS+V+ Y N + YVH
Sbjct: 568 LEKFKREKNSILLCTEVLSRGLNVPEVSLVIIY------NAVKTFAQYVHTTGRTARGSR 621
Query: 420 XXVAIS-FIHDKKSFEVLSAIQKYFGDIEI---TKVPTDDLDEMETIVKKALK 468
AI+ +HD+ S + + K D EI + +L EM + +K
Sbjct: 622 SGTAITLLLHDELSGAYI--LSKAMRDEEIKALDPLQAKELQEMSAKFESGMK 672
>Hs19923595 [A] KOG0337 ATP-dependent RNA helicase
Length = 882
Score = 122 bits (305), Expect = 1e-27
Identities = 89/305 (29%), Positives = 152/305 (49%), Gaps = 12/305 (3%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNST--QAICLS 156
++ P+ IQ K +P+++ +++A +++G+GKTA F L M R+ + T +A+ LS
Sbjct: 116 YKVPTPIQRKTIPVILDGK--DVVAMARTGSGKTACFLLPMFERLKTHSAQTGARALILS 173
Query: 157 PARELARQTLEVIQEMGKFTKTSSQLVV-----PDSFERNKPITANIVVGTPGTVLDLIR 211
P RELA QTL+ +E+GKFT + L++ D F +I++ TPG ++ +
Sbjct: 174 PTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHE-NPDIIIATPGRLVHVAV 232
Query: 212 RKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAKK 271
L L S++ V DEAD + + G +Q + LP Q VLFSAT + ++A+
Sbjct: 233 EMSLKLQSVEYVVFDEADRLFE-MGFAEQLQEIIARLPGGHQTVLFSATLPKLLVEFARA 291
Query: 272 IIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTI-GSSIIFVKTKQTA 330
+ V + L + +K F + +L L+ ++ +++FV TK A
Sbjct: 292 GLTEPVLIRLDVDTKLNEQLKTSFFLVREDTKAAVLLHLLHNVVRPQDQTVVFVATKHHA 351
Query: 331 NLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVV 390
L L + + ++ L R + F G+ LI T++ ARG+DIP + V+
Sbjct: 352 EYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSTLIVTDLAARGLDIPLLDNVI 411
Query: 391 NYDLP 395
NY P
Sbjct: 412 NYSFP 416
>CE27553 [A] KOG0337 ATP-dependent RNA helicase
Length = 853
Score = 121 bits (304), Expect = 2e-27
Identities = 97/363 (26%), Positives = 163/363 (44%), Gaps = 43/363 (11%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDP-NVNSTQAICLSP 157
F +P+ IQ K +P ++ +++A S++G+GKTAAF + ML ++ + +A+ +SP
Sbjct: 44 FNQPTPIQRKTIPCIMDGK--DVVAMSRTGSGKTAAFVIPMLQKLKRRDTTGIRALMVSP 101
Query: 158 ARELARQTLEVIQEMGKFT-KTSSQLVVPDSFERNKPI---TANIVVGTPGTVLDLIRRK 213
RELA QT +V++E+G+FT + LV D E +I++ TPG +L +I
Sbjct: 102 TRELALQTFKVVKELGRFTGLRCACLVGGDQIEEQFSTIHENPDILLATPGRLLHVIVEM 161
Query: 214 MLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAKKII 273
L L ++ V DEAD + + G DQ K +P++ Q +LFSAT + +AK +
Sbjct: 162 DLRLSYVQYVVFDEADRLFE-MGFQDQLTETLKRIPESRQTLLFSATLPKMLVDFAKAGL 220
Query: 274 PTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYG-----LLTIG---------- 318
+ + L +E + +F C +E + +L LL
Sbjct: 221 TDPMLVRLDVDEKVSDKLSMVFCMCRPDEKLFALLHLCRNFCFKKLLETSLKKCKISKKK 280
Query: 319 --------------SSIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFR 364
+++F T + + L + G S ++ L + R I F
Sbjct: 281 VPLLKKVRMDRENKQTVVFCATMKHVEYVVGILHRAGIDCSFVYSQLDATARKMNIQKFH 340
Query: 365 EGRSKVLITTNVLARGIDIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAI 424
E ++ +L+ T+V ARG+DIP + V+N P +VH AI
Sbjct: 341 EKQNNILVVTDVAARGVDIPLLDTVINLHFP------PKAKLFVHRVGRVARAGRSGTAI 394
Query: 425 SFI 427
S I
Sbjct: 395 SLI 397
>At1g16280 [A] KOG0340 ATP-dependent RNA helicase
Length = 491
Score = 121 bits (303), Expect = 3e-27
Identities = 98/338 (28%), Positives = 164/338 (47%), Gaps = 20/338 (5%)
Query: 100 QKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICLSPAR 159
+KP+ +Q +P ++ +++ +Q+G+GKTAAF+L +L R+ + A+ ++P R
Sbjct: 79 RKPTPVQTHCVPKILAG--RDVLGLAQTGSGKTAAFALPILHRLAEDPYGVFALVVTPTR 136
Query: 160 ELARQTLEVIQEMGKFTKTSSQLVVP--DSFERNKPITA--NIVVGTPGTVLDLIRRKM- 214
ELA Q E + +G ++V D + + + +IV+ TPG + L+
Sbjct: 137 ELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLVSRPHIVITTPGRIKVLLENNPD 196
Query: 215 --LNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAKKI 272
K VLDEAD +LD G D+ + + LPK+ Q +LFSAT ++ +
Sbjct: 197 VPPVFSRTKFLVLDEADRVLDV-GFQDELRTIFQCLPKSRQTLLFSATMTSNLQALLEHS 255
Query: 273 IPTAVSLELQKNEVNVSAIKQ--LFMDCDNEE-HKYTILSELYGLLTIGSSIIFVKTKQT 329
A E + V + Q +F D D +E + ILS++ I S++IFV T +T
Sbjct: 256 SNKAYFYEAYEGLKTVDTLTQQFIFEDKDAKELYLVHILSQMEDK-GIRSAMIFVSTCRT 314
Query: 330 ANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMV 389
L L + + +H R + F+ G+ +L+ T+V +RG+DIP+V +V
Sbjct: 315 CQRLSLMLDELEVENIAMHSLNSQSMRLSALSKFKSGKVPILLATDVASRGLDIPTVDLV 374
Query: 390 VNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFI 427
+NYD+P DP YVH +A+S I
Sbjct: 375 INYDIP------RDPRDYVHRVGRTARAGRGGLAVSII 406
>7296891 [A] KOG0341 DEAD-box protein abstrakt
Length = 619
Score = 121 bits (303), Expect = 3e-27
Identities = 97/382 (25%), Positives = 170/382 (44%), Gaps = 31/382 (8%)
Query: 96 AMKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQ---- 151
A + P+ IQ + LP ++ ++I + +G+GKT F L ++ S
Sbjct: 194 AKGIKNPTPIQVQGLPTVLAG--RDLIGIAFTGSGKTLVFVLPVIMFALEQEYSLPFERN 251
Query: 152 ----AICLSPARELARQTLEVIQEMGKFTKTSSQLVVPDSFERNK-PIT---------AN 197
+ + P+RELA+QT E+IQ K + + P++ +
Sbjct: 252 EGPYGLIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGGLPVSEALDVISRGVH 311
Query: 198 IVVGTPGTVLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLF 257
IVV TPG ++D++ +K+L L + +DEAD M+D G + + F Q +LF
Sbjct: 312 IVVATPGRLMDMLDKKILTLDMCRYLCMDEADRMID-MGFEEDVRTIFSFFKGQRQTLLF 370
Query: 258 SATFDDGVRQYAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTI 317
SAT ++ +A+ + V++ + + + Q E +L L T
Sbjct: 371 SATMPKKIQNFARSALVKPVTINVGRAGAASMNVTQQVEYVKQEAKVVYLLDCLQK--TA 428
Query: 318 GSSIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVL 377
+IF + KQ + ++ L +G + +HG ++R R +D +R G+ VL+ T+V
Sbjct: 429 PPVLIFAEKKQDVDCIHEYLLLKGVEAVAIHGGKDQEERSRAVDAYRVGKKDVLVATDVA 488
Query: 378 ARGIDIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLS 437
++G+D P+V V+NYD+P D YVH +A + I+ VL
Sbjct: 489 SKGLDFPNVQHVINYDMPD------DIENYVHRIGRTGRSNTKGLATTLINKTTEQSVLL 542
Query: 438 AIQKYFGDIEITKVPTDDLDEM 459
++ IE + D LDE+
Sbjct: 543 DLKHLL--IEGKQEVPDFLDEL 562
>SPCC63.11 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 662
Score = 120 bits (302), Expect = 3e-27
Identities = 95/333 (28%), Positives = 158/333 (46%), Gaps = 41/333 (12%)
Query: 97 MKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTML---TRVDPNVNSTQ-- 151
+ +++PS IQ A+P+L++ ++I +++G+GKTAAF + ++ +++ P S
Sbjct: 267 VNYKEPSSIQRAAIPVLLQRK--DLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHL 324
Query: 152 ---AICLSPARELARQTLEVIQEMGKFTKTSS----QLVVPDSFERNK---PITANIVVG 201
A+ L+P RELA+Q + E KF + +V +FE A+IVV
Sbjct: 325 GPYAVVLAPTRELAQQ---IQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVA 381
Query: 202 TPGTVLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTC--------- 252
TPG +LD + R++ L V+DEAD MLD G D ++ LP +
Sbjct: 382 TPGRLLDCLERRLFVLSQCTYVVMDEADRMLD-MGFEDDVNKILSSLPSSNASEKDGSIL 440
Query: 253 ----------QLVLFSATFDDGVRQYAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEE 302
Q ++FSAT V AK + V L + V ++Q ++
Sbjct: 441 ATANSSSSRRQTIMFSATLPPRVANLAKSYLIEPVMLTIGNIGQAVDRVEQRVEMISDDS 500
Query: 303 HKYTILSELYGLLTIGSSII-FVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLID 361
K+ + E+ II FV K+ + +L G LHG + R+R I+
Sbjct: 501 KKWRRVEEILESNRFSPPIIIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIE 560
Query: 362 DFREGRSKVLITTNVLARGIDIPSVSMVVNYDL 394
R + +L+ T++ RGIDIP+VS+V+NY++
Sbjct: 561 QLRNKTADILVATDIAGRGIDIPNVSLVLNYNM 593
>Hs4759278 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 820
Score = 119 bits (299), Expect = 7e-27
Identities = 102/388 (26%), Positives = 179/388 (45%), Gaps = 62/388 (15%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLT---------RVDPNVNS 149
+++P+ IQ +A+P+ +++ ++I +++G+GKTAAF + +L R++ +
Sbjct: 411 YKEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQG 468
Query: 150 TQAICLSPARELARQTLEVIQEMGKFTKTSSQLVVPDSFERNKPIT----ANIVVGTPGT 205
AI L+P RELA+Q E + GK + V+ ++ IV+ TPG
Sbjct: 469 PYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGR 528
Query: 206 VLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLP---------------- 249
++D++ + L L VLDEAD M+D G ++ + +P
Sbjct: 529 LIDVLENRYLVLSRCTYVVLDEADRMID-MGFEPDVQKILEHMPVSNQKPDTDEAEDPEK 587
Query: 250 ----------KTCQLVLFSATFDDGVRQYAKKII--PTAVSLELQKNEVNVSAIKQLFMD 297
K Q V+F+AT V + A+ + P V + + + +++F+
Sbjct: 588 MLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIG-SAGKPHERVEQKVFLM 646
Query: 298 CDNEEHKYTILSELYGLLTIGSS---IIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQ 354
++E+ K +L +L G IIFV K+ ++L L+K G+ LHG +
Sbjct: 647 SESEKRK-----KLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQE 701
Query: 355 DRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXX 414
R+ + + + G +L+ T+V RGIDI VSMVVNYD+ + Y+H
Sbjct: 702 QREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDM------AKNIEDYIHRIGRT 755
Query: 415 XXXXXXXVAISFIHDKKS---FEVLSAI 439
VAI+F+ + S +E+ AI
Sbjct: 756 GRAGKSGVAITFLTKEDSAVFYELKQAI 783
>Hs17474597 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 820
Score = 119 bits (299), Expect = 7e-27
Identities = 102/388 (26%), Positives = 179/388 (45%), Gaps = 62/388 (15%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLT---------RVDPNVNS 149
+++P+ IQ +A+P+ +++ ++I +++G+GKTAAF + +L R++ +
Sbjct: 411 YKEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQG 468
Query: 150 TQAICLSPARELARQTLEVIQEMGKFTKTSSQLVVPDSFERNKPIT----ANIVVGTPGT 205
AI L+P RELA+Q E + GK + V+ ++ IV+ TPG
Sbjct: 469 PYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGR 528
Query: 206 VLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLP---------------- 249
++D++ + L L VLDEAD M+D G ++ + +P
Sbjct: 529 LIDVLENRYLVLSRCTYVVLDEADRMID-MGFEPDVQKILEHMPVSNQKPDTDEAEDPEK 587
Query: 250 ----------KTCQLVLFSATFDDGVRQYAKKII--PTAVSLELQKNEVNVSAIKQLFMD 297
K Q V+F+AT V + A+ + P V + + + +++F+
Sbjct: 588 MLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIG-SAGKPHERVEQKVFLM 646
Query: 298 CDNEEHKYTILSELYGLLTIGSS---IIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQ 354
++E+ K +L +L G IIFV K+ ++L L+K G+ LHG +
Sbjct: 647 SESEKRK-----KLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQE 701
Query: 355 DRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXX 414
R+ + + + G +L+ T+V RGIDI VSMVVNYD+ + Y+H
Sbjct: 702 QREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDM------AKNIEDYIHRIGRT 755
Query: 415 XXXXXXXVAISFIHDKKS---FEVLSAI 439
VAI+F+ + S +E+ AI
Sbjct: 756 GRAGKSGVAITFLTKEDSAVFYELKQAI 783
>YJL033w [A] KOG0343 RNA Helicase
Length = 770
Score = 119 bits (298), Expect = 1e-26
Identities = 93/329 (28%), Positives = 164/329 (49%), Gaps = 28/329 (8%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVD----PNVNSTQAIC 154
F K ++IQ ++P+ ++ H+++A +++G+GKT AF + ++ ++ + A+
Sbjct: 61 FIKLTEIQADSIPVSLQG--HDVLAAAKTGSGKTLAFLVPVIEKLYREKWTEFDGLGALI 118
Query: 155 LSPARELARQTLEVIQEMGKFTKTSSQLVVPDS---FERNKPITANIVVGTPGTVLDLIR 211
+SP RELA Q EV+ ++G T S+ LV+ FE + NI++GTPG +L +
Sbjct: 119 ISPTRELAMQIYEVLTKIGSHTSFSAGLVIGGKDVKFELERISRINILIGTPGRILQHLD 178
Query: 212 RKM-LNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAK 270
+ + LN ++++ VLDEAD LD G + L + Q +LFSAT V A+
Sbjct: 179 QAVGLNTSNLQMLVLDEADRCLD-MGFKKTLDAIVSTLSPSRQTLLFSATQSQSVADLAR 237
Query: 271 KIIP---TAVSLELQKNEVNVSA-----IKQLFMDCDNEEHKYTILSELYGLLTIGSSII 322
+ T + ++ VN A ++Q +++ + + S + L I+
Sbjct: 238 LSLTDYKTVGTHDVMDGSVNKEASTPETLQQFYIEVPLADKLDILFSFIKSHLKC-KMIV 296
Query: 323 FVKTKQTANLLYAKLKKEGHQVSI--LHGDLQSQDRDRLIDDFREGRSKVLITTNVLARG 380
F+ + + + +Y +K +S+ LHG + + R +D F + L T+V+ARG
Sbjct: 297 FLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQRARTETLDKFNRAQQVCLFATDVVARG 356
Query: 381 IDIPSVSMVVNYDLPTLPNGQADPSTYVH 409
ID P+V VV D P D TY+H
Sbjct: 357 IDFPAVDWVVQVDCP------EDVDTYIH 379
>YHR169w [A] KOG0340 ATP-dependent RNA helicase
Length = 431
Score = 119 bits (298), Expect = 1e-26
Identities = 109/396 (27%), Positives = 180/396 (44%), Gaps = 45/396 (11%)
Query: 96 AMKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICL 155
AMK +P+ IQ+ +P ++ + I +++G+GKT AF+ MLT+ + + + L
Sbjct: 19 AMKITQPTAIQKACIPKILEG--RDCIGGAKTGSGKTIAFAGPMLTKWSEDPSGMFGVVL 76
Query: 156 SPARELARQTLEVIQEMGKFTK------TSSQLVVPDSFE-RNKPITANIVVGTPGTVLD 208
+P RELA Q E +G + +V + + + KP + ++ TPG +
Sbjct: 77 TPTRELAMQIAEQFTALGSSMNIRVSVIVGGESIVQQALDLQRKP---HFIIATPGRLAH 133
Query: 209 LIRRK----MLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTC-QLVLFSATFDD 263
I + L K VLDEAD +L + PK Q +LF+AT D
Sbjct: 134 HIMSSGDDTVGGLMRAKYLVLDEADILLTSTFADHLATCISALPPKDKRQTLLFTATITD 193
Query: 264 GVRQYAKKIIPT------AVSLELQKNEVNVSAIK-QLFMDCDNEEHKYTILSELYGLLT 316
V+ + A +E N S +K + + ++ + Y LY LLT
Sbjct: 194 QVKSLQNAPVQKGKPPLFAYQVESVDNVAIPSTLKIEYILVPEHVKEAY-----LYQLLT 248
Query: 317 IG-----SSIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVL 371
++IIFV TA +L LK+ +V+ LH + Q+R + FR +++L
Sbjct: 249 CEEYENKTAIIFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQERTNSLHRFRANAARIL 308
Query: 372 ITTNVLARGIDIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKK 431
I T+V +RG+DIP+V +VVNYD+P +DP ++H AISF+ +
Sbjct: 309 IATDVASRGLDIPTVELVVNYDIP------SDPDVFIHRSGRTARAGRIGDAISFVTQRD 362
Query: 432 SFEVLSAIQKYFGDIEITKVPTDDLDEMETIVKKAL 467
+S IQ I T+ + + +++KAL
Sbjct: 363 ----VSRIQAIEDRINKKMTETNKVHD-TAVIRKAL 393
>At5g51280 [A] KOG0341 DEAD-box protein abstrakt
Length = 591
Score = 119 bits (298), Expect = 1e-26
Identities = 102/387 (26%), Positives = 182/387 (46%), Gaps = 38/387 (9%)
Query: 101 KPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLT------RVDPNVNSTQAIC 154
+P+ IQ + LP+++ +MI + +G+GKT F L M+ + P I
Sbjct: 168 QPTPIQVQGLPVILAG--RDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIG 225
Query: 155 L--SPARELARQTLEVIQEM------GKFTKTSSQLVVPDSFERNKPITA----NIVVGT 202
L P+RELARQT EV+++ + S L + R++ +IVV T
Sbjct: 226 LIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVHIVVAT 285
Query: 203 PGTVLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFD 262
PG + D++ +K ++L + + LDEAD ++D G D V Q +LFSAT
Sbjct: 286 PGRLKDMLAKKKMSLDACRYLTLDEADRLVDL-GFEDDIREVFDHFKSQRQTLLFSATMP 344
Query: 263 DGVRQYAKKIIPTAVSLELQK-NEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSI 321
++ +A+ + V++ + + N+ I+++ + +E K L E T +
Sbjct: 345 TKIQIFARSALVKPVTVNVGRAGAANLDVIQEV--EYVKQEAKIVYLLECLQK-TSPPVL 401
Query: 322 IFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGI 381
IF + K + ++ L +G + +HG +DR+ I F+ G+ VL+ T+V ++G+
Sbjct: 402 IFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAISSFKAGKKDVLVATDVASKGL 461
Query: 382 DIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQK 441
D P + V+NYD+P A+ YVH +A +FI+ +S L ++
Sbjct: 462 DFPDIQHVINYDMP------AEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKH 515
Query: 442 YFGDIEITKVP------TDDLDEMETI 462
+ + ++P D ++E ETI
Sbjct: 516 LLQEAK-QRIPPVLAELNDPMEEAETI 541
>CE26887 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 730
Score = 119 bits (297), Expect = 1e-26
Identities = 89/334 (26%), Positives = 159/334 (46%), Gaps = 42/334 (12%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVD--PNVNSTQ----- 151
+ +P+ IQ +A+P+ +++ ++I +++G+GKTAAF L +L + P + +
Sbjct: 321 YLEPTPIQRQAIPIGLQN--RDVIGVAETGSGKTAAFLLPLLVWITSLPKMERQEHRDLG 378
Query: 152 --AICLSPARELARQTLEVIQEMGKFTKTSSQLVVPDSFERNKPIT----ANIVVGTPGT 205
AI ++P RELA+Q E + GK + V+ + ++ + +V+ TPG
Sbjct: 379 PYAIIMAPTRELAQQIEEETNKFGKLLGIKTVSVIGGASREDQGMKLRMGVEVVIATPGR 438
Query: 206 VLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTC------------- 252
+LD++ + L L +LDEAD MLD G +V +++P T
Sbjct: 439 LLDVLENRYLLLNQCTYVILDEADRMLD-MGFEPDVQKVLEYMPDTNMKKDTDEFDNEEA 497
Query: 253 ------------QLVLFSATFDDGVRQYAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDN 300
Q V+F+AT + + A++ + + + ++Q+
Sbjct: 498 LMKGFSTREKYRQTVMFTATMSSAIERLARQYLRRPAVVHIGSAGKPTERVEQVVYMVP- 556
Query: 301 EEHKYTILSELYGLLTIGSSIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLI 360
E+ K L E+ IIFV K+ A++L L K G + ++LHG R+ +
Sbjct: 557 EDRKRKKLVEVLESQFQPPIIIFVNQKKGADMLSKGLTKLGFKPTVLHGGKGQDQREYAL 616
Query: 361 DDFREGRSKVLITTNVLARGIDIPSVSMVVNYDL 394
+EG S +L+ T+V RGID+ VS+V+NYD+
Sbjct: 617 QALKEGTSDILVATDVAGRGIDVKDVSLVLNYDM 650
>CE24878 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 769
Score = 119 bits (297), Expect = 1e-26
Identities = 89/334 (26%), Positives = 159/334 (46%), Gaps = 42/334 (12%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVD--PNVNSTQ----- 151
+ +P+ IQ +A+P+ +++ ++I +++G+GKTAAF L +L + P + +
Sbjct: 321 YLEPTPIQRQAIPIGLQN--RDVIGVAETGSGKTAAFLLPLLVWITSLPKMERQEHRDLG 378
Query: 152 --AICLSPARELARQTLEVIQEMGKFTKTSSQLVVPDSFERNKPIT----ANIVVGTPGT 205
AI ++P RELA+Q E + GK + V+ + ++ + +V+ TPG
Sbjct: 379 PYAIIMAPTRELAQQIEEETNKFGKLLGIKTVSVIGGASREDQGMKLRMGVEVVIATPGR 438
Query: 206 VLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTC------------- 252
+LD++ + L L +LDEAD MLD G +V +++P T
Sbjct: 439 LLDVLENRYLLLNQCTYVILDEADRMLD-MGFEPDVQKVLEYMPDTNMKKDTDEFDNEEA 497
Query: 253 ------------QLVLFSATFDDGVRQYAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDN 300
Q V+F+AT + + A++ + + + ++Q+
Sbjct: 498 LMKGFSTREKYRQTVMFTATMSSAIERLARQYLRRPAVVHIGSAGKPTERVEQVVYMVP- 556
Query: 301 EEHKYTILSELYGLLTIGSSIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLI 360
E+ K L E+ IIFV K+ A++L L K G + ++LHG R+ +
Sbjct: 557 EDRKRKKLVEVLESQFQPPIIIFVNQKKGADMLSKGLTKLGFKPTVLHGGKGQDQREYAL 616
Query: 361 DDFREGRSKVLITTNVLARGIDIPSVSMVVNYDL 394
+EG S +L+ T+V RGID+ VS+V+NYD+
Sbjct: 617 QALKEGTSDILVATDVAGRGIDVKDVSLVLNYDM 650
>Hs9507237 [A] KOG0335 ATP-dependent RNA helicase
Length = 724
Score = 118 bits (296), Expect = 2e-26
Identities = 101/381 (26%), Positives = 184/381 (47%), Gaps = 56/381 (14%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPN---------VNS 149
+ K + +Q+ ++P+++ +++A +Q+G+GKTAAF L +L + + +
Sbjct: 308 YTKLTPVQKYSIPIILAG--RDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKELQE 365
Query: 150 TQAICLSPARELARQTLEVIQEMGKFTKTSS--QLVVPDSFERNKPIT-----ANIVVGT 202
+ I ++P REL Q + E KF+ + +V+ + I NI+ T
Sbjct: 366 PECIIVAPTRELVNQ---IYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCAT 422
Query: 203 PGTVLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLP-------KTCQLV 255
PG ++D+I ++ + L IK VLDEAD MLD G G + +KK + + Q +
Sbjct: 423 PGRLMDIIGKEKIGLKQIKYLVLDEADRMLD-MGFGPE---MKKLISCPGMPSKEQRQTL 478
Query: 256 LFSATFDDGVRQYAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEH---------KYT 306
+FSATF + +++ A + + K+ A+ Q+ C + + K
Sbjct: 479 MFSATFPEEIQRLAAEFL---------KSNYLFVAVGQVGGACRDVQQTVLQVGQFSKRE 529
Query: 307 ILSELYGLLTIGSSIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREG 366
L E+ + +++FV+TK+ A+ + L +E + +HGD + ++R++ + DFR G
Sbjct: 530 KLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFG 589
Query: 367 RSKVLITTNVLARGIDIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISF 426
+ VL+ T+V ARG+DI +V V+N+DLP+ + YVH AISF
Sbjct: 590 KCPVLVATSVAARGLDIENVQHVINFDLPSTID------EYVHRIGRTGRCGNTGRAISF 643
Query: 427 IHDKKSFEVLSAIQKYFGDIE 447
+ + + K D +
Sbjct: 644 FDLESDNHLAQPLVKVLTDAQ 664
>At3g18600 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 568
Score = 118 bits (295), Expect = 2e-26
Identities = 91/325 (28%), Positives = 161/325 (49%), Gaps = 23/325 (7%)
Query: 97 MKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAF-----SLTMLTRVDPNVNSTQ 151
M FQ ++IQ ++ L+ +++ +++G+GKT AF L R P N T
Sbjct: 107 MGFQYMTQIQAGSIQPLLEGK--DVLGAARTGSGKTLAFLIPAVELLFKERFSPR-NGTG 163
Query: 152 AICLSPARELARQTLEVIQEMGKFTKTSSQLVVPDSFERNKPIT----ANIVVGTPGTVL 207
I + P RELA QT V +E+ K + +V+ + R++ +N+V+ TPG +L
Sbjct: 164 VIVICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRRSEAQRIASGSNLVIATPGRLL 223
Query: 208 DLIRR-KMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVR 266
D ++ K +K V+DEAD +L+ + + ++ K LPKT Q LFSAT V+
Sbjct: 224 DHLQNTKAFIYKHLKCLVIDEADRILE-ENFEEDMNKILKILPKTRQTALFSATQTSKVK 282
Query: 267 QYAKKIIPTAVSLELQ--KNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFV 324
A+ + + V +++ + +V ++Q + +++ ++S L L ++F
Sbjct: 283 DLARVSLTSPVHVDVDDGRRKVTNEGLEQGYCVVPSKQRLILLISFLKKNLN-KKIMVFF 341
Query: 325 KTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIP 384
T ++ +K VS +HG + R + DF + + +L+ T+V ARG+DIP
Sbjct: 342 STCKSVQFHTEIMKISDVDVSDIHGGMDQNRRTKTFFDFMKAKKGILLCTDVAARGLDIP 401
Query: 385 SVSMVVNYDLPTLPNGQADPSTYVH 409
SV ++ YD P P+ Y+H
Sbjct: 402 SVDWIIQYDPPD------KPTEYIH 420
>7303950 [A] KOG0340 ATP-dependent RNA helicase
Length = 521
Score = 118 bits (295), Expect = 2e-26
Identities = 101/362 (27%), Positives = 175/362 (47%), Gaps = 25/362 (6%)
Query: 105 IQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICLSPARELARQ 164
IQ+K +P ++ + I +++G+GKT AF+L +L R+ S A+ L+P ELA Q
Sbjct: 33 IQQKCIPAILAG--QDCIGAAKTGSGKTFAFALPILERLSEEPVSHFALVLTPTHELAYQ 90
Query: 165 TLEVIQEMGKFTKTSSQLVV--PDSFERNKPITA--NIVVGTPGTVLD-LIRRKMLNLGS 219
E G+ +V D ++ + +IVV PG + D L + +
Sbjct: 91 ISEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQRPHIVVAMPGRLADHLTGCDTFSFDN 150
Query: 220 IKVFVLDEADNMLDKQGLGDQCIRV-KKFLPKTCQLVLFSATFDDGVRQYAKKIIPTAVS 278
+K V+DEAD ML+ G D+ + + ++ LPKT Q + FSAT D +++ I P A
Sbjct: 151 LKYLVVDEADRMLN--GDFDESLSIIERCLPKTRQNLFFSATMKDFIKE--SSIFPIASD 206
Query: 279 LELQKNEVNVSAIKQL---FMDCDNEEHKYTILSELYGLLTIGSS---IIFVKTKQTANL 332
+ +V+ ++ L ++ C + + ++ L + +IF TK+ L
Sbjct: 207 CFEWSQDSDVATVETLDQRYLLCADYDRDMVLIEALRKYREENENANVMIFTNTKKYCQL 266
Query: 333 LYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVNY 392
L LK LHG ++ ++R + F+ + + LI T+V ARG+DIPSV +V+N+
Sbjct: 267 LSMTLKNMEIDNVCLHGFMRQKERVAALSRFKSNQIRTLIATDVAARGLDIPSVELVMNH 326
Query: 393 DLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYFGDIEITKVP 452
LP P Y+H ++IS + E+L+AI++ + ++T+ P
Sbjct: 327 MLP------RTPKEYIHRVGRTARAGRKGMSISIFRFPRDLELLAAIEEEI-NTKLTEHP 379
Query: 453 TD 454
D
Sbjct: 380 ID 381
>ECU10g0440 [A] KOG0330 ATP-dependent RNA helicase
Length = 400
Score = 117 bits (294), Expect = 3e-26
Identities = 96/367 (26%), Positives = 172/367 (46%), Gaps = 35/367 (9%)
Query: 101 KPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICLSPARE 160
+P+++Q + +P ++ ++IA SQ+G+GKT AF L +++ + S + ++P RE
Sbjct: 23 RPTEVQRQVIPAVLGGG--DVIAVSQTGSGKTLAFVLPIVSHLLQKNRSFYCLVVAPTRE 80
Query: 161 LARQTLEVIQEMGKFTKTSSQLVVPDSFERNKPITAN-------IVVGTPGTVLD-LIRR 212
L+ Q E M + T L+V + N + AN +VVGTPG + + +++
Sbjct: 81 LSSQIAECFN-MFQATGLRVCLLVGGA---NFNVQANQLSKRPHVVVGTPGRIAEHVLKT 136
Query: 213 KMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAKKI 272
K ++ FVLDEAD ++ + D + K Q +LF+AT D + + + I
Sbjct: 137 KSFRTERVRKFVLDEADRFFEQDFVEDLETIIPSLREKR-QTLLFTATMSDEISKLSSSI 195
Query: 273 IPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQTANL 332
+ ++ + V A+K+ ++ + K + L EL + S I+FV TA +
Sbjct: 196 LKRPKTIRTAEKYETVPALKEYYLFVAMK-WKNSALVELLEMSQGMSVIVFVSMCVTARV 254
Query: 333 LYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVNY 392
+ L + G LHG+L + R+ + F+E R VL+ T++ +RG+DI V +V+N+
Sbjct: 255 MSLALARLGFCSEALHGELSQEKREEAMRSFKESRFNVLVCTDLGSRGLDISHVDLVINF 314
Query: 393 DLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHD-------------KKSFEVLSAI 439
D+P Y+H AI+ + +K E +
Sbjct: 315 DVP------KSGKDYIHRVGRTARAGRSGTAITLVTQYDVEQIQKIEFTLEKKLEEFKMM 368
Query: 440 QKYFGDI 446
+K FG I
Sbjct: 369 KKNFGTI 375
>7293941 [A] KOG0344 ATP-dependent RNA helicase
Length = 594
Score = 117 bits (294), Expect = 3e-26
Identities = 88/311 (28%), Positives = 156/311 (49%), Gaps = 19/311 (6%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPN-VNSTQAICLSP 157
F P+ IQ +ALP+L++ ++A + +G+GKT AF ++ + + +A+ L+P
Sbjct: 139 FDHPTPIQMQALPVLLQR--RALMACAPTGSGKTLAFLTPIINGLRAHKTTGLRALVLAP 196
Query: 158 ARELARQTLEVIQEMGKFTKTSSQLVVPDSFERNKPITA-----NIVVGTPGTVLDLIRR 212
RELA+Q E+ + T + + S + K +I+V TP V L+++
Sbjct: 197 TRELAQQIYRECAELTRETGLRTHFISKVSEAKQKHGAECKQRYDILVSTPNRVRFLLQQ 256
Query: 213 K--MLNLGSIKVFVLDEADNMLD------KQGLGDQCIRVKKFLPKTCQLVLFSATFDDG 264
+ +L+L ++ FVLDEAD +++ K+ L D I P C + FSAT+
Sbjct: 257 EPPLLDLSHVEWFVLDEADRLMEEGQNNFKEQLDD--IYAACSNPTKC-VAFFSATYTVP 313
Query: 265 VRQYAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFV 324
V ++A + + V + + ++Q + +E K + +L ++FV
Sbjct: 314 VAKWALRHLKNLVRITIGVQNSATETVQQELLFVGSEGGKLVAIRDLVRQGLQPPVLVFV 373
Query: 325 KTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIP 384
++K+ A L+ +L +G V ++H + RD + FREG VLI T ++ RGID
Sbjct: 374 QSKERAKQLFEELLYDGINVDVIHAERSQHQRDNCVKAFREGSIWVLICTELMGRGIDFK 433
Query: 385 SVSMVVNYDLP 395
V++V+NYD P
Sbjct: 434 GVNLVINYDFP 444
>YDL031w [A] KOG0337 ATP-dependent RNA helicase
Length = 995
Score = 117 bits (293), Expect = 4e-26
Identities = 94/357 (26%), Positives = 163/357 (45%), Gaps = 63/357 (17%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNS--TQAICLS 156
F++P+ IQ K +PL+++ +++ +++G+GKTAAF L M+ ++ + +A+ LS
Sbjct: 157 FRQPTPIQRKTIPLILQS--RDIVGMARTGSGKTAAFILPMVEKLKSHSGKIGARAVILS 214
Query: 157 PARELARQTLEVIQEMGKFTKTSSQLVVP-DSFERNKPI---TANIVVGTPGTVLDLIRR 212
P+RELA QT V ++ + T+ S L+ DS E + ++++ TPG L L
Sbjct: 215 PSRELAMQTFNVFKDFARGTELRSVLLTGGDSLEEQFGMMMTNPDVIIATPGRFLHLKVE 274
Query: 213 KMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAKKI 272
L+L S++ V DEAD + + G +Q + LP T Q +LFSAT + + + K
Sbjct: 275 MNLDLKSVEYVVFDEADRLFE-MGFQEQLNELLASLPTTRQTLLFSATLPNSLVDFVKAG 333
Query: 273 IPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSII---------- 322
+ V + L ++ LF+ N + + +L L ++ I +
Sbjct: 334 LVNPVLVRLDAETKVSENLEMLFLSSKNADREANLLYILQEIIKIPLATSEQLQKLQNSN 393
Query: 323 -------------------FVKTK--------------QTANLLYAKLKKEGHQVSIL-- 347
F K K + A +L+ + +S L
Sbjct: 394 NEADSDSDDENDRQKKRRNFKKEKFRKQKMPAANELPSEKATILFVPTRHHVEYISQLLR 453
Query: 348 ---------HGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVNYDLP 395
+G L R R + +FR G + +L+ T+V ARG+DIP ++ V+NY LP
Sbjct: 454 DCGYLISYIYGTLDQHARKRQLYNFRAGLTSILVVTDVAARGVDIPMLANVINYTLP 510
>CE17559 [A] KOG0339 ATP-dependent RNA helicase
Length = 811
Score = 117 bits (293), Expect = 4e-26
Identities = 89/347 (25%), Positives = 171/347 (48%), Gaps = 27/347 (7%)
Query: 98 KFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRV--DPNVNSTQ---A 152
++++P+ IQ A+P + +++ +++G+GKTAA+ + + P++ + + A
Sbjct: 284 EYEQPTPIQAMAIPSALSG--RDVLGIAKTGSGKTAAYLWPAIVHIMDQPDLKAGEGPVA 341
Query: 153 ICLSPARELARQTLEVIQEMGKFTKTSSQLVV-----PDSFERNKPIT---ANIVVGTPG 204
+ + P RELA ++V QE KF K + + +E++ + A +VV TPG
Sbjct: 342 VIVVPTRELA---IQVFQEAKKFCKVYNINPICAYGGGSKWEQSNELQNEGAEMVVCTPG 398
Query: 205 TVLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDG 264
++DL++ N V DEAD M D G Q + + Q ++FSATF
Sbjct: 399 RIIDLVKMGATNFLRTTFLVFDEADRMFD-MGFEAQVKSISDHVRPDRQCLMFSATFKQK 457
Query: 265 VRQYAKKIIPTAVSL-ELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIF 323
V + A+ + V + + + E N +++F+ + + + ++ L ++G +IF
Sbjct: 458 VERLARDALVDPVRIVQGEVGEANADIEQKVFVMQNQDVKLHWLIRNLVEFASLGKVLIF 517
Query: 324 VKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDI 383
V K + + KLK + + +LHGD+ +R+ + FR+ +S++L+ T+V ARG+DI
Sbjct: 518 VTKKLDSEDVAKKLKMKDFDIVLLHGDMLQAERNENLLKFRK-KSQILVATDVAARGLDI 576
Query: 384 PSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDK 430
+ V+N+D+ D T+VH A + + +K
Sbjct: 577 SEIRTVINFDM------ARDIDTHVHRIGRTGRAGHKGTAYTLVTEK 617
>Hs21071032 [A] KOG0341 DEAD-box protein abstrakt
Length = 622
Score = 116 bits (291), Expect = 6e-26
Identities = 91/347 (26%), Positives = 172/347 (49%), Gaps = 33/347 (9%)
Query: 102 PSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLT-------RVD-PNVNSTQAI 153
P+ IQ + +P ++ +MI + +G+GKT F+L ++ R+ +
Sbjct: 204 PTPIQIQGIPTILSG--RDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGL 261
Query: 154 CLSPARELARQTLEVIQEMGKFTKTSSQLVVPDSF--------ERNKPIT--ANIVVGTP 203
+ P+RELARQT +++ + + S ++ + E+ + I +++V TP
Sbjct: 262 IICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATP 321
Query: 204 GTVLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIR-VKKFLPKTCQLVLFSATFD 262
G ++DL+++KM++L + LDEAD M+D GD IR + + Q +LFSAT
Sbjct: 322 GRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGD--IRTIFSYFKGQRQTLLFSATMP 379
Query: 263 DGVRQYAKKIIPTAVSLELQK-NEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSI 321
++ +AK + V++ + + ++ I+++ + EE K L E T +
Sbjct: 380 KKIQNFAKSALVKPVTINVGRAGAASLDVIQEV--EYVKEEAKMVYLLECLQK-TPPPVL 436
Query: 322 IFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGI 381
IF + K + ++ L +G + +HG ++R + I+ FREG+ VL+ T+V ++G+
Sbjct: 437 IFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGL 496
Query: 382 DIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIH 428
D P++ V+NYD+P + YVH +A +FI+
Sbjct: 497 DFPAIQHVINYDMP------EEIENYVHRIGRTGRSGNTGIATTFIN 537
>CE23832 [A] KOG0341 DEAD-box protein abstrakt
Length = 630
Score = 115 bits (289), Expect = 1e-25
Identities = 100/364 (27%), Positives = 174/364 (47%), Gaps = 33/364 (9%)
Query: 102 PSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLT------RVDPNVNSTQ--AI 153
P+ IQ + +P+ + +MI + +G+GKT F L ++ P + S +
Sbjct: 213 PTAIQIQGIPVALSG--RDMIGIASTGSGKTMTFVLPLVMFCLEQEMKLPFMRSEGPFGL 270
Query: 154 CLSPARELARQTLEVIQEM----GKFTKTSSQLV-----VPDSFERNKPIT--ANIVVGT 202
+ P+RELARQ ++I EM GK + VP E+ K + +IVV T
Sbjct: 271 IIVPSRELARQIFDLIIEMFDALGKAGLPEMRAGLCIGGVPIG-EQAKDVRDGIHIVVAT 329
Query: 203 PGTVLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFD 262
PG + D++ +K++NL + VLDEAD MLD G D+ + F Q +LFSAT
Sbjct: 330 PGRLSDMLTKKIINLEVCRYLVLDEADRMLD-MGFEDEIKSIFYFFKAQRQTLLFSATMP 388
Query: 263 DGVRQYAKKIIPTAVSLELQK-NEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSI 321
++ +AK + + + + + +++ +++L + E+K + E T +
Sbjct: 389 RKIQFFAKSALVKPIVVNVGRAGAASLNVLQEL--EFVRSENKLVRVLECLQK-TSPKVL 445
Query: 322 IFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGI 381
IF + K + +Y L +G +V+ +HG DR I+ FR+ VL+ T+V ++G+
Sbjct: 446 IFAEKKVDVDNIYEYLLVKGVEVASIHGGKDQSDRHAGIEAFRKNEKDVLVATDVASKGL 505
Query: 382 DIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQK 441
D + V+N+D+P D YVH +A +FI+ K VLS +++
Sbjct: 506 DFQGIEHVINFDMP------EDIENYVHRIGRTGRSGRKGLATTFINKKSEMSVLSDLKQ 559
Query: 442 YFGD 445
+
Sbjct: 560 LLAE 563
>At4g33370 [A] KOG0341 DEAD-box protein abstrakt
Length = 542
Score = 114 bits (286), Expect = 2e-25
Identities = 91/350 (26%), Positives = 165/350 (47%), Gaps = 31/350 (8%)
Query: 102 PSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNV--------NSTQAI 153
P+ IQ + LP+++ +MI + +G+GKT F L M+ A+
Sbjct: 120 PTPIQVQGLPVVLSG--RDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIAL 177
Query: 154 CLSPARELARQTLEVIQEM------GKFTKTSSQLVVPDSFERNKPITA----NIVVGTP 203
+ P+RELA+QT +V+++ + + S L + R++ +IVV TP
Sbjct: 178 VICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVATP 237
Query: 204 GTVLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDD 263
G + D++ +K ++L + ++ LDEAD ++D G D V Q +LFSAT
Sbjct: 238 GRLKDILAKKKMSLDACRLLTLDEADRLVDL-GFEDDIRHVFDHFKSQRQTLLFSATMPA 296
Query: 264 GVRQYAKKIIPTAVSLELQK-NEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSII 322
++ +A + V++ + + N+ I+++ + +E K L E T +I
Sbjct: 297 KIQIFATSALVKPVTVNVGRAGAANLDVIQEV--EYVKQEAKIVYLLECLQKTT-PPVLI 353
Query: 323 FVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGID 382
F + K + ++ L +G + +HG +DRD I F+ G+ VL+ T+V ++G+D
Sbjct: 354 FCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKGLD 413
Query: 383 IPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKS 432
P + V+NYD+P + YVH +A +FI+ +S
Sbjct: 414 FPDIQHVINYDMP------GEIENYVHRIGRTGRCGKTGIATTFINKNQS 457
>Hs13514831 [A] KOG0343 RNA Helicase
Length = 875
Score = 114 bits (285), Expect = 3e-25
Identities = 94/356 (26%), Positives = 175/356 (48%), Gaps = 22/356 (6%)
Query: 98 KFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVD----PNVNSTQAI 153
+++ ++IQ++ + L ++ +++ +++G+GKT AF + +L + + + +
Sbjct: 88 QYRLVTEIQKQTIGLALQGK--DVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVL 145
Query: 154 CLSPARELARQTLEVIQEMGKFTKTSSQLVVPDS---FERNKPITANIVVGTPGTVLDLI 210
+SP RELA QT EV++++GK S+ L++ E + NI+V TPG +L +
Sbjct: 146 IISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHM 205
Query: 211 RRKM-LNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYA 269
+ + +++ VLDEAD +LD G D V + LPK Q +LFSAT V+ A
Sbjct: 206 DETVSFHATDLQMLVLDEADRILD-MGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLA 264
Query: 270 KKII--PTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTK 327
+ + P V + + + ++Q ++ C+ ++ + S L L S + F K
Sbjct: 265 RLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQQKISVLYSFLRSHLKKKSIVFFSSCK 324
Query: 328 QTANL--LYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPS 385
+ L ++ +L+ G + LHG Q R + ++F R+ VL T++ ARG+D P+
Sbjct: 325 EVQYLYRVFCRLRP-GVSILALHGRQQQMRRMEVYNEFVRKRAAVLFATDIAARGLDFPA 383
Query: 386 VSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQK 441
V+ V+ +D P D +TY+H A+ + + V +QK
Sbjct: 384 VNWVLQFDCP------EDANTYIHRAGRTARYKEDGEALLILLPSEKAMVQQLLQK 433
>CE25231 [A] KOG0343 RNA Helicase
Length = 732
Score = 114 bits (285), Expect = 3e-25
Identities = 101/382 (26%), Positives = 169/382 (43%), Gaps = 24/382 (6%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRV-----DPNVNSTQAI 153
+ KP++IQ + + +++ +++G+GKT A + +L + P+ A+
Sbjct: 96 YTKPTEIQRDTIAYSLTGS--DVVGAAKTGSGKTLALVIPVLEALWRAKWSPDYG-LGAL 152
Query: 154 CLSPARELARQTLEVIQEMGKFTKTSSQLVVPDS---FERNKPITANIVVGTPGTVLD-L 209
+SP RELA QT I +G S LV+ S FERN+ NI+V TPG +L +
Sbjct: 153 IISPTRELALQTFSTINAVGAHHGFSCGLVIGGSDVAFERNRISGINIIVCTPGRLLQHM 212
Query: 210 IRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYA 269
++ S++V VLDEAD MLD G Q + LP Q +LFSAT V+
Sbjct: 213 DENAQMSCDSLQVLVLDEADRMLD-MGFSKQLNSIINNLPAERQTLLFSATQTRNVKDLC 271
Query: 270 KKII--PTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTK 327
+ P VS+ + +KQ ++ + EEHK L S++FV +
Sbjct: 272 RVCTNDPVFVSVHENASAATPDNLKQSYVIVE-EEHKINALWSFIEAHRKKKSLVFVSSC 330
Query: 328 QTANLLYAKLK--KEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPS 385
+ A L + G V L G + + R F E ++ VLI T+V +RG+D
Sbjct: 331 KQARFLTEAFSQLRPGLPVMGLWGTMNQKKRIETFTKFDESKAAVLIATDVASRGLDFEH 390
Query: 386 VSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYFGD 445
+ V+ D P A Y+H ++ + + ++ ++K+
Sbjct: 391 IDWVIQVDCP------AQIDDYIHRVGRSARMDDSGNSLLMVSPSQEEAMIGKLEKHSIP 444
Query: 446 IEITKVPTDDLDEMETIVKKAL 467
IE K+ D + ++ ++ L
Sbjct: 445 IEELKIHPDAMSDVRVKLRAIL 466
>CE07736 [A] KOG0335 ATP-dependent RNA helicase
Length = 720
Score = 114 bits (284), Expect = 4e-25
Identities = 103/382 (26%), Positives = 175/382 (44%), Gaps = 45/382 (11%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRV----DPNVNST---- 150
+ + + IQ+ LPL+ +++A +Q+G+GKTAAF L +++R+ D N +
Sbjct: 318 YTRTTPIQQYTLPLVADGK--DILACAQTGSGKTAAFLLPIMSRLILEKDLNYGAEGGCY 375
Query: 151 -QAICLSPARELARQTLEVIQEMGKFTKTSSQLVVPD------SFERNKPITA-NIVVGT 202
+ I L+P RELA Q + E KF+ S + P + +++ + I+VGT
Sbjct: 376 PRCIILTPTRELADQ---IYNEGRKFSYQSVMEIKPVYGGINVGYNKSQIMKGCTIIVGT 432
Query: 203 PGTVLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKF--LPKTC--QLVLFS 258
G V + L + VLDEAD M+D G G + ++ + +PK Q ++FS
Sbjct: 433 IGRVKHFCEDGAIKLDKCRYLVLDEADRMIDSMGFGPEIEQIINYKNMPKNDKRQTMMFS 492
Query: 259 ATFDDGVRQYAKKIIPTAVSL-ELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGL--- 314
ATF V++ A+K++ ++ + K + Q F CD K L +L G+
Sbjct: 493 ATFPSSVQEAARKLLREDYTMITIDKIGAANKCVIQEFELCDRTS-KVDKLLKLLGIDID 551
Query: 315 ---------LTIGSSIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFRE 365
+ + +I+FV ++ A+ L + + +HG + ++R + FR
Sbjct: 552 TYTTEKNSDVFVKKTIVFVAQQKMADTLASIMSAAQVPAITIHGAREQKERSAALKLFRS 611
Query: 366 GRSKVLITTNVLARGIDIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAIS 425
G VLI T V+ RG+DI V V+NYD+P + Y+H A S
Sbjct: 612 GAKPVLIATAVVERGLDIKGVDHVINYDMPN------NIDDYIHRIGRTGRVGNSGRATS 665
Query: 426 FIHDKKSFEVLSAIQKYFGDIE 447
FI ++L + + D E
Sbjct: 666 FISLADDVQILPQLVRTLADAE 687
>Hs13129006 [A] KOG0331 ATP-dependent RNA helicase
Length = 737
Score = 113 bits (283), Expect = 5e-25
Identities = 99/345 (28%), Positives = 164/345 (46%), Gaps = 37/345 (10%)
Query: 120 NMIAQSQSGTGKTAAFSLTMLTRVDPNVN------STQAICLSPARELARQTLEVIQEMG 173
++IAQ+++GTGKT +F++ ++ R+ N S + + L+P RELA Q + +++
Sbjct: 176 DLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDIT 235
Query: 174 K-------FTKTSSQLVVPDSFERNKPITANIVVGTPGTVLDLIRRKMLNLGSIKVFVLD 226
+ + TS Q + + RN +I+VGTPG + D ++ L+L ++ VLD
Sbjct: 236 RKLSVACFYGGTSYQSQI--NHIRNG---IDILVGTPGRIKDHLQSGRLDLSKLRHVVLD 290
Query: 227 EADNMLDKQGLGDQCIRVKKFLPKTC-----QLVLFSATFDDGVRQYAKKIIPTA---VS 278
E D MLD G +Q + KT Q +LFSAT V + AKK + + V
Sbjct: 291 EVDQMLDL-GFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVD 349
Query: 279 LELQKNEVNVSAIKQLFMDCDNEEHKYTI--LSELYGLLTIGSSIIFVKTKQTANLLYAK 336
L + + + ++ L + C + I + ++Y + G +IIF +TK+ + A
Sbjct: 350 LVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSG-SEGRAIIFCETKKNVTEM-AM 407
Query: 337 LKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVNYDLPT 396
LHGD+ R+ + FREG KVL+ TNV ARG+DIP V +V+ P
Sbjct: 408 NPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPP- 466
Query: 397 LPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQK 441
D +Y+H + I F ++ ++ QK
Sbjct: 467 -----QDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQK 506
>At5g08620 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 563
Score = 113 bits (283), Expect = 5e-25
Identities = 106/344 (30%), Positives = 155/344 (44%), Gaps = 52/344 (15%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRV--------DPNVNST 150
F+ + +QE LPL+++ +++A++++GTGKT AF L + V D
Sbjct: 100 FKTMTVVQEATLPLILQGK--DILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPI 157
Query: 151 QAICLSPARELARQTLEVIQEMGKFTKTSSQLVV------PDSFERNKPITANIVVGTPG 204
+ + P RELA Q + K+ + VV P R + I+V TPG
Sbjct: 158 IVLVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTKLPTEQRRLQKSPCQILVATPG 217
Query: 205 TVLDLIRRKM---LNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATF 261
+ D I L +KV VLDEAD++LD G + R+ +PK Q LFSAT
Sbjct: 218 RLKDHIDNTSGFATRLMGVKVLVLDEADHLLD-MGFRREIERIIAAVPKQRQTFLFSATV 276
Query: 262 DDGVRQYAKKIIPTAVSLELQKNEVNV---------SAIKQLFMDCDNEEHKYTILSELY 312
D VRQ V+L+ VN + Q++M + H S LY
Sbjct: 277 SDEVRQICH------VALKRDHEFVNCVQEGAGETHQKVSQMYMIASLDRH----FSLLY 326
Query: 313 GLL------TIGSS-IIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFRE 365
GLL +G IIF T L+ L K V +H R R+ D+FR+
Sbjct: 327 GLLKKHITDNVGYKVIIFCTTAMVTRLVADLLGKLSLNVREIHSRKPQSYRTRVSDEFRK 386
Query: 366 GRSKVLITTNVLARGIDIPSVSMVVNYDLPTLPNGQADPSTYVH 409
+S +L+T++V ARG+D P VS+VV LP +D Y+H
Sbjct: 387 SKSIILVTSDVSARGVDYPDVSLVVQMGLP------SDREQYIH 424
>At5g05450 [A] KOG0345 ATP-dependent RNA helicase
Length = 593
Score = 112 bits (279), Expect = 2e-24
Identities = 100/388 (25%), Positives = 174/388 (44%), Gaps = 52/388 (13%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTML------TRVDPNVNSTQA 152
F+ + +Q +PLL ++ + +G+GKT AF + ++ T P +
Sbjct: 36 FEFCTPVQAATIPLLCSYK--DVAVDAATGSGKTLAFVVPLVEILRRSTSFPPKPHQVMG 93
Query: 153 ICLSPARELARQTLEVIQEMGKFTKTSSQLVVPDSFERNKPIT------ANIVVGTPGTV 206
+ +SP REL+ Q V Q + +++ E + N+++GTPG +
Sbjct: 94 VIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEEEGCNVLIGTPGRL 153
Query: 207 LDLIRR-KMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGV 265
D++ R ++L+ ++++ +LDEAD +L+ G Q + LPK + LFSAT +GV
Sbjct: 154 SDIMERMEILDFRNLEILILDEADRLLE-MGFQRQVNYIISRLPKQRRTGLFSATQTEGV 212
Query: 266 RQYAKKIIPTAVSLELQK-----------NEVNVSAIKQLFMDCDNEEHKYTILSELYGL 314
+ AK + V +E++ N S + +M+C+ ++ S+L L
Sbjct: 213 EELAKAGLRNPVRVEVRAKSKSESSQQLTNSKTPSGLHLEYMECEADKKS----SQLVDL 268
Query: 315 LTIGSS---IIFVKTKQTANLLYAKLKKEGHQVSI----LHGDLQSQDRDRLIDDFREGR 367
L S I+F T + + L K SI +HGD++ RD+ + F +
Sbjct: 269 LIKNSDKKLIVFFMTCASVDYWGLVLSKIPALKSISLIPIHGDMKQNARDKALASFTKAS 328
Query: 368 SKVLITTNVLARGIDIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFI 427
S L+ T+V ARG+DIP + VV YD P DP+ + H AI F+
Sbjct: 329 SGALLCTDVAARGLDIPGIDYVVQYDPP------QDPNMFNHRAGRTARLGRQGRAIVFL 382
Query: 428 HDKKSFEVLSAIQKYFGDIEITKVPTDD 455
K+ + Y + I +VP ++
Sbjct: 383 LPKE--------EAYVEFMRIRRVPLEE 402
>7298459 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 802
Score = 112 bits (279), Expect = 2e-24
Identities = 88/335 (26%), Positives = 158/335 (46%), Gaps = 44/335 (13%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAF---------SLTMLTRVDPNVNS 149
+++P+ IQ +A+P+ +++ ++I +++G+GKT AF SL + R++
Sbjct: 414 YKEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLIPLLSWIQSLPKIERLEDVDQG 471
Query: 150 TQAICLSPARELARQTLEVIQEMGKFTKTSSQLVVPDSFERNKP----ITANIVVGTPGT 205
AI ++P RELA+Q E + G+ + +VV + + IV+ TPG
Sbjct: 472 PYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQGFRLRLGCEIVIATPGR 531
Query: 206 VLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTC------------- 252
++D++ + L L VLDEAD M+D G ++ +++P T
Sbjct: 532 LIDVLENRYLVLNQCTYIVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEEAEDETK 590
Query: 253 ------------QLVLFSATFDDGVRQYAKKIIPTAVSLELQKNEVNVSAIKQL-FMDCD 299
Q V+F+AT V + A+ + ++ + +Q+ +M +
Sbjct: 591 LMENFYTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPTERTEQIVYMMGE 650
Query: 300 NEEHKYTILSELYGLLTIGSSIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRL 359
N++ K L E+ IIFV K+ A++L L+K G+ LHG + R+
Sbjct: 651 NDKRKK--LMEILSRKIDPPVIIFVNQKKGADVLAKGLEKLGYNSCTLHGGKGQEQREYA 708
Query: 360 IDDFREGRSKVLITTNVLARGIDIPSVSMVVNYDL 394
+ + G +L+ T+V RGIDI VS+V+NYD+
Sbjct: 709 LAALKSGAKDILVATDVAGRGIDIKDVSLVINYDM 743
>CE11402 [A] KOG0334 RNA helicase
Length = 995
Score = 111 bits (278), Expect = 2e-24
Identities = 95/346 (27%), Positives = 164/346 (46%), Gaps = 40/346 (11%)
Query: 97 MKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQ----- 151
+K+ IQ +P ++ H+++ Q+++ GKTAAF L ++ ++ T+
Sbjct: 399 IKYNNVRTIQGAMIPQVLDG--HDVLGQAETSAGKTAAFGLPIIDKILRMDEETRNKARQ 456
Query: 152 -----AICLSPARELARQTLEVIQEMGKFTKTSSQLVVPDSFERNKPIT-----ANIVVG 201
A+ L+P RELA Q E ++ + T L S +R + + +I++G
Sbjct: 457 DDGPLALILAPTRELAAQIHEALRTYCQNTDIIVLLSYGQS-DRARSLNEIRNGCDILIG 515
Query: 202 TPGTVLDLIRRKMLNLGSIKVFVLDEADNMLD---KQGLGDQCIRVKK--FLPK--TCQL 254
T G ++D + ++L ++ V DEAD +L K LG +K F+ T Q
Sbjct: 516 TCGRIMDFTVKSHISLLHLRFLVFDEADRLLQDMKKDPLGHLGAIIKDAGFMESAATRQT 575
Query: 255 VLFSATFDDGVRQYAKKIIPTA------VSLELQKNEVNVSAIKQLFMDCDNEEHKYTIL 308
++ SATF+ V A +++ + + L ++ + F +C K L
Sbjct: 576 IMTSATFNASVMTVANELMKRLPGQDEMIKIVLANGRLS-KRVNLEFFECKGLAEKNAKL 634
Query: 309 SELYGLLTIGSS---IIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFRE 365
E+ G + IIFV+ K + AKL G LHGD R++LI+DF+
Sbjct: 635 REILKQNVNGKTLKTIIFVQKKDQCDACAAKLTSGGMLAQTLHGDRSQDMREKLINDFKS 694
Query: 366 GRSKVLITTNVLARGIDIPSVSMVVNYDLPTLPNGQAD--PSTYVH 409
R +L+TT++L+RGID+ + V+N+D LP+G D T++H
Sbjct: 695 NRVNLLVTTDLLSRGIDVSDLDRVINFD---LPDGDPDQGADTFIH 737
>CE06239 [A] KOG0344 ATP-dependent RNA helicase
Length = 581
Score = 111 bits (278), Expect = 2e-24
Identities = 85/315 (26%), Positives = 151/315 (46%), Gaps = 25/315 (7%)
Query: 100 QKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRV----------DPNVNS 149
++PS IQ +++P + N++A + +G+GKT AF+L ++ + N +
Sbjct: 147 RQPSPIQMQSIPFMTER--RNVLASAPTGSGKTLAFALPVIDEILELKQRADYSSSNSSK 204
Query: 150 TQAICLSPARELARQTLEVIQEMGKFTKTSSQLVVPDSFERNKPITANIVVGTPGTVLDL 209
A+ L P RELA QT E K+ +S S E A+I+V TP ++
Sbjct: 205 LLAVVLEPTRELAAQTYT---EFLKYCANTSISAANFSGEETDIQHADILVSTPNRIVFH 261
Query: 210 IRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIR------VKKFLPKTCQLVLFSATFDD 263
+ + ++ S++ V+DE+D + + D+C R K K ++ FSATF
Sbjct: 262 LDK--IDTSSLRWLVVDESDRLFEVVEGQDKCFRNQLAAIYKACDAKCTRVAFFSATFSH 319
Query: 264 GVRQYAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIF 323
V ++ K+ I + + + + +++KQ C E+ K + L +++F
Sbjct: 320 EVEKWCKENIDEIGMVCVGERNSSNTSVKQKLTYCGTEDGKKIAIRNLLRTSFKPPALVF 379
Query: 324 VKTKQTANLLYAKLKK--EGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGI 381
V++K A L L +V ++ ++RD ++ FR G VL+ T +L RG+
Sbjct: 380 VQSKDRAVQLVKLLSAIDSNLKVDSINSGKSDKERDETMERFRRGEIWVLVCTELLGRGL 439
Query: 382 DIPSVSMVVNYDLPT 396
D+ V +V+NYDLPT
Sbjct: 440 DLSDVGLVINYDLPT 454
>SPAC1F7.02c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 578
Score = 110 bits (276), Expect = 3e-24
Identities = 94/327 (28%), Positives = 162/327 (48%), Gaps = 25/327 (7%)
Query: 97 MKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLT-----RVDPNVNSTQ 151
M F+ ++IQ++++P L+ +++ +++G+GKT AF + + + P N T
Sbjct: 107 MGFETMTEIQKRSIPPLLAG--RDVLGAAKTGSGKTLAFLIPTIEMLYALKFKPR-NGTG 163
Query: 152 AICLSPARELARQTLEVIQEMGKFTKTSSQLVVPDSFERNKPIT----ANIVVGTPGTVL 207
I +SP RELA Q V +E+ K+ + +V+ + R + N++V TPG +L
Sbjct: 164 VIIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADKLVKGVNLLVATPGRLL 223
Query: 208 DLIRR-KMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLP-KTCQLVLFSATFDDGV 265
D ++ K +++ V+DEAD +L+ G D+ ++ K LP + Q +LFSAT V
Sbjct: 224 DHLQNTKGFVFRNLRSLVIDEADRILEI-GFEDEMRQIMKILPSENRQTLLFSATQTTKV 282
Query: 266 RQYAK---KIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSII 322
A+ K P V+++ K V ++Q ++ D+++ + S L L I+
Sbjct: 283 EDLARISLKPGPLYVNVDSGKPTSTVEGLEQGYVVVDSDKRFLLLFSFLKRNLK-KKVIV 341
Query: 323 FVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGID 382
F+ + + + L V LHG + Q R +F +L+ TNV ARG+D
Sbjct: 342 FMSSCASVKYMAELLNYIDLPVLDLHGKQKQQRRTNTFFEFCNAEKGILLCTNVAARGLD 401
Query: 383 IPSVSMVVNYDLPTLPNGQADPSTYVH 409
IP+V +V YD P DP Y+H
Sbjct: 402 IPAVDWIVQYDPPD------DPRDYIH 422
>7299006 [A] KOG0345 ATP-dependent RNA helicase
Length = 613
Score = 110 bits (275), Expect = 5e-24
Identities = 121/398 (30%), Positives = 189/398 (47%), Gaps = 48/398 (12%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQ------- 151
FQ+ + +Q A+PLL+ ++ A++ +G+GKT AF + ML + T
Sbjct: 27 FQQMTPVQTAAIPLLLARK--DVSAEAVTGSGKTLAFLVPMLEILQRRHKETPWGPKEIG 84
Query: 152 AICLSPARELARQTLEVIQ---EMGKFTKTSSQLVVP-DSFERN----KPITANIVVGTP 203
A+ +SP RELARQ EV+ E + QL+V +S E + + T I+V TP
Sbjct: 85 ALVISPTRELARQISEVLAQFLEHEDLEHLNQQLIVGGNSIEEDIATLRRETPCILVCTP 144
Query: 204 GTVLDLIRRKM--LNLG----SIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLF 257
G + DL +RK LNL S++ VLDEAD +LD G + +LP+ + LF
Sbjct: 145 GRLEDLFQRKGDDLNLAAQVKSLEFLVLDEADRLLDL-GFKTSVNNILGYLPRQRRTGLF 203
Query: 258 SATFDDGVRQYAKKII--PTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYG-- 313
SAT V + + P VS++ +K VN A Q F E K+ L E
Sbjct: 204 SATQTTEVTDLIRAGLRNPVLVSVK-EKASVNTPARLQNFYRIVEPELKFVALLEFLSSP 262
Query: 314 LLTIGSSIIFVKT----KQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSK 369
IG ++F T + A L L K V +HG ++++ R +++ FR
Sbjct: 263 ATVIGKVMVFFPTCACVEYWAEALPPLLPKR--TVLGIHGKMKNK-RANVVEKFRNTPQA 319
Query: 370 VLITTNVLARGIDIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHD 429
VL+ T+VLARG+D+P + VV +D P + S++VH A+ F+
Sbjct: 320 VLLCTDVLARGLDVPEIEWVVQWDPP------STASSFVHRVGRTARQGNEGNALVFLLP 373
Query: 430 KKSFEV--LSAIQKYFGDIEITKVPTDDLDEMETIVKK 465
+ V L QK +E+TK+ T++ ++ + KK
Sbjct: 374 SEDAYVHFLKINQK----VELTKLLTEEAEDADREKKK 407
>CE23814 [A] KOG0340 ATP-dependent RNA helicase
Length = 696
Score = 109 bits (273), Expect = 8e-24
Identities = 92/333 (27%), Positives = 155/333 (45%), Gaps = 21/333 (6%)
Query: 125 SQSGTGKTAAFSLTMLTRVDPNVNSTQAICLSPARELARQTLEVIQEMGK-FTKTSSQLV 183
+++GTGKT AF++ +L ++ + A+ L+P RELA Q E +GK T S +V
Sbjct: 190 ARTGTGKTLAFAIPILQKLSVDPYGIYALILTPTRELAFQIAEQFTALGKPITLKCSVIV 249
Query: 184 VPDSF---ERNKPITANIVVGTPGTVLDLIRRKMLNLGS----IKVFVLDEADNMLDKQG 236
S R ++VV TPG + DLI + I+ FVLDEAD ML+ Q
Sbjct: 250 GGRSLIHQARELSERPHVVVATPGRLADLIESDPDTIAKVFKKIQFFVLDEADRMLEGQ- 308
Query: 237 LGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAKKII--PTAVSLELQKNEVNVSAIKQL 294
DQ + + + + Q +L SAT + + + P + + +E V ++Q
Sbjct: 309 YNDQLKPIFESISEKRQTLLLSATITNNINMLHRVSTRKPYFFEDKGKDDESTVDRLEQK 368
Query: 295 FMDCD---NEEHKYTILSELYGLLTIGSSIIFVKTKQTANLLYAKLKKEGHQVSILHGDL 351
++ C + + ++ S +IF +T + L + G +V LH +
Sbjct: 369 YVVCPVAVKDAYLVYVVKNYSEKNPKSSVMIFAQTCRECQALAYMFEGLGFRVGSLHSQI 428
Query: 352 QSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVNYDLPTLPNGQADPSTYVHXX 411
+ R + FR +V+I T+V +RG+DIP V +VVN+++P P TY+H
Sbjct: 429 PQKQRLAALSAFRSKTLQVIICTDVASRGLDIPHVDLVVNHNVPQC------PKTYIHRV 482
Query: 412 XXXXXXXXXXVAISFIHDKKSFEVLSAIQKYFG 444
A+SF+ + E+L A+++ G
Sbjct: 483 GRSARAGRFGSALSFV-TQYDVELLQAVEQVIG 514
>YFL002c [A] KOG0345 ATP-dependent RNA helicase
Length = 606
Score = 109 bits (272), Expect = 1e-23
Identities = 101/400 (25%), Positives = 177/400 (44%), Gaps = 55/400 (13%)
Query: 97 MKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQ----- 151
M F+ + +Q +P+L + +++ S +G+GKTAAF + +L +V +T
Sbjct: 25 MGFETMTPVQASTIPMLAGNK--DVVVDSVTGSGKTAAFVIPVLEKVVKEEANTSKFKKA 82
Query: 152 ---AICLSPARELARQTLEVIQEM-----GKFTKTSSQLVVP----------DSFERNKP 193
++ ++P REL+RQ V+ QL+V +F RN+P
Sbjct: 83 HFHSLIIAPTRELSRQIESVVLSFLEHYPSDLFPIKCQLLVGTNEATVRDDVSNFLRNRP 142
Query: 194 ITANIVVGTPGTVLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQ 253
I++GTPG VLD ++ + + + V+DEAD +LD + D ++ + LPK +
Sbjct: 143 ---QILIGTPGRVLDFLQMPAVKTSACSMVVMDEADRLLDMSFIKD-TEKILRLLPKQRR 198
Query: 254 LVLFSATFDDGVRQYAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYG 313
LFSAT K + V + + S++K L N K +L +
Sbjct: 199 TGLFSATMRSAGSDIFKTGLRNPVRITVNSKNQAPSSLK-LNYCVVNPAEKLQLLVSILN 257
Query: 314 LLTIGSSIIFVKTKQTANLLYAKLKKEGH--------QVSILHGDLQSQDRDRLIDDFRE 365
I++ T + + Y+ ++ G ++ LHG LQ+ R + + F +
Sbjct: 258 NYKFKKCIVYFPTCVSVSYFYSFIQYLGKRNILVNEVEIFSLHGKLQTSARTKTLTAFTD 317
Query: 366 GRS-KVLITTNVLARGIDIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAI 424
S VL TT+V ARGIDIP V +V+ D PT + ++H AI
Sbjct: 318 SLSNSVLFTTDVAARGIDIPDVDLVIQLDPPT------NTDMFMHRCGRTGRANRVGKAI 371
Query: 425 SFIHDKKSFEVLSAIQKYFGDIEITKVPTDDLDEMETIVK 464
+F+++ + + + +Q V +L+E++ VK
Sbjct: 372 TFLNEGREEDFIPFMQ----------VKNVELEELDLEVK 401
>ECU10g1680 [A] KOG0343 RNA Helicase
Length = 452
Score = 109 bits (272), Expect = 1e-23
Identities = 89/322 (27%), Positives = 157/322 (48%), Gaps = 24/322 (7%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDP----NVNSTQAIC 154
F ++Q+K +P+ + H++I SQ+GTGKT AF + L R+ + +
Sbjct: 24 FVSMKEVQQKVIPMALEG--HDIIGSSQTGTGKTLAFLVPTLQRLVSLGWGGGDGLGCLV 81
Query: 155 LSPARELARQTLEVIQEMGKFTKTSSQLVVPD---SFERNKPITANIVVGTPGTVLDLIR 211
++P RELA Q +V+ + K+T S+ L++ E K NI+V TPG +L ++
Sbjct: 82 ITPTRELALQIFDVLSRIAKYTVLSTGLIMGGLEAEDELLKVNQMNILVCTPGRLLQHLQ 141
Query: 212 RK-MLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAK 270
L+ ++++ +LDEAD M++ G + + +++P+ Q +LFSAT + K
Sbjct: 142 ENPYLSTANVQILILDEADKMIE-MGFKEVLEDILEYIPQKKQTLLFSATPKASTARILK 200
Query: 271 KIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQTA 330
P +S+ K E S ++Q F + K L G I+F T +
Sbjct: 201 LEDPRIISI--YKEEGFPSQLRQYFYMMRTGD-KINYLHTFIGSNPEVKGIVFFSTCKEV 257
Query: 331 N---LLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVS 387
LL+ +LK +++ L G + + R + F + ++ +L T++ +RG+D P V
Sbjct: 258 KFHCLLFERLKLR-NRIFCLSGGMSQKQRIDVFKRFVKEKNGILFCTDLGSRGLDFPKVD 316
Query: 388 MVVNYDLPTLPNGQADPSTYVH 409
+V+ YD P + TYVH
Sbjct: 317 VVIQYDCP------CNVETYVH 332
>SPBC24C6.02 [A] KOG0345 ATP-dependent RNA helicase
Length = 606
Score = 108 bits (271), Expect = 1e-23
Identities = 101/408 (24%), Positives = 188/408 (45%), Gaps = 54/408 (13%)
Query: 96 AMKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTM---LTRVDPNVNSTQA 152
A F+K + +Q A+PL +++ +++ ++ +G+GKT A+ L +TR D + A
Sbjct: 18 AQGFKKMTPVQANAIPLFLKNK--DLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLGA 75
Query: 153 ICLSPARELARQTLEVIQEMGKFTKTS---SQLVVPDSFERNKPITAN-----------I 198
+ ++P RELA Q V +E+ + S + +V D + K N +
Sbjct: 76 LIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLTNDLASFREKNPSV 135
Query: 199 VVGTPGTVLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFS 258
V+GTPG + +++ ++ +++ +LDEAD ++D G + LPK + LFS
Sbjct: 136 VIGTPGRLNEMLSH--ISSKHLEILILDEADTLID-MGFQRTLQSIISQLPKQRRTGLFS 192
Query: 259 ATFDDGVRQYAK--------KIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSE 310
AT +D V + K ++ T S ++ + AI+ L + +K +
Sbjct: 193 ATMNDTVSSFLKIAGLRNSVRVSVTVTSKKIDTRTPSSLAIQSLVIP---PIYKVQCMIH 249
Query: 311 LYGLLTIGSSIIFVKTKQTA---NLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGR 367
L + +I+F + + N L+ K ++ LHG +R R + F++
Sbjct: 250 LLCTIEYEKAIVFFSSCASVEYFNSLFLTYKLP-FEIVALHGQQVQSNRSRNFEKFKKSN 308
Query: 368 SK-VLITTNVLARGIDIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISF 426
K VL TT++ +RG+DIP+V V+ D P DP ++ H VAI
Sbjct: 309 KKTVLFTTDIASRGLDIPNVDFVLQLDPP------LDPKSFSHRCGRAGRAGRAGVAIVL 362
Query: 427 IHD--KKSFEVLSAIQKYFGDIEITKVPTD----DLDEMETIVKKALK 468
++D ++ +E L ++K + IT++ T DL ++ + + K
Sbjct: 363 LNDGREEEYEELLRVRK----VPITRIDTPIEALDLSRLKVLTHELRK 406
>Hs4826688 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 439
Score = 108 bits (270), Expect = 2e-23
Identities = 92/303 (30%), Positives = 146/303 (47%), Gaps = 32/303 (10%)
Query: 120 NMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICLSPARELARQTLEVIQEMGKFTKTS 179
N+ + +GTGKT AF L +L+R+DP V TQ + L+P++ELA QT V +E G S
Sbjct: 34 NIFGLAPTGTGKTLAFLLPILSRIDPKVKQTQVLILAPSQELAMQTTAVAREWGALVDVS 93
Query: 180 SQLVV--------PDSFERNKPITANIVVGTPGTVLDLIRRKMLNLGSIKVFVLDEADNM 231
++ D +++KP +IVVGT G VL ++ L L ++ + DEAD M
Sbjct: 94 VTSLIGGANGRRQADKLKKDKP---HIVVGTLGRVLTMLDGGALKLNGLQTVIFDEADAM 150
Query: 232 LDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVR----QYAKKIIPTAVSLELQKNEVN 287
L + D + LP QL LFSAT ++ + +++ P +V +
Sbjct: 151 LSDE-RRDSLQALAAQLPTDVQLGLFSATSGVDLKYVADTFGQEVRPVSVGTDAP----- 204
Query: 288 VSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQTANLLYAKLKKEGHQV-SI 346
+AI F D ++ K ++L +L +++F T + A L+ V SI
Sbjct: 205 -AAITHEFQYVD-QKAKASLLIQL--ARNKQQALVFFNTISGLVNMQATLRHAHASVMSI 260
Query: 347 LHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVNYDLPTLPNGQADPST 406
D + R + F++G +L+ T+V ARG+DI + +VVN LP T
Sbjct: 261 GSNDKRQVQRADALRLFKKGEVSLLLVTDVAARGLDIEDLPLVVNAQLP------QRKKT 314
Query: 407 YVH 409
Y+H
Sbjct: 315 YIH 317
>Hs13787206 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 670
Score = 108 bits (269), Expect = 2e-23
Identities = 96/333 (28%), Positives = 154/333 (45%), Gaps = 38/333 (11%)
Query: 97 MKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAF---------SLTMLTRVDPNV 147
M F ++IQ K++ L+ +++A +++G+GKT AF L +TR
Sbjct: 197 MGFTNMTEIQHKSIRPLLEG--RDLLAAAKTGSGKTLAFLIPAVELIVKLRFMTR----- 249
Query: 148 NSTQAICLSPARELARQTLEVIQEMGKFTKTSSQLVVPDSFERNKPITA-------NIVV 200
N T + LSP RELA QT V++E+ + L++ S N+ A NI+V
Sbjct: 250 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGS---NRSAEAQKLGNGINIIV 306
Query: 201 GTPGTVLDLIRRKM-LNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSA 259
TPG +LD ++ +++ V+DEAD +LD G ++ ++ K LP Q +LFSA
Sbjct: 307 ATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDV-GFEEELKQIIKLLPTRRQTMLFSA 365
Query: 260 TFDDGVRQYAK---KIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLT 316
T V A+ K P V ++ K V ++Q ++ C +E+ ++ +L
Sbjct: 366 TQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEK-RFLLLFTFLKKNR 424
Query: 317 IGSSIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNV 376
++F + + Y L V +HG + R F S L+ T+V
Sbjct: 425 KKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGTLLCTDV 484
Query: 377 LARGIDIPSVSMVVNYDLPTLPNGQADPSTYVH 409
ARG+DIP V +V YD P DP Y+H
Sbjct: 485 AARGLDIPEVDWIVQYDPPD------DPKEYIH 511
>At5g08610 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 827
Score = 107 bits (268), Expect = 3e-23
Identities = 101/382 (26%), Positives = 170/382 (44%), Gaps = 37/382 (9%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQ------- 151
F+ + +QE LP++++ +++A++++GTGKT AF L + V + +++
Sbjct: 379 FETMTVVQEATLPIILQGK--DVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPI 436
Query: 152 -AICLSPARELARQTLEVIQEMGKFTKTSSQLVV------PDSFERNKPITANIVVGTPG 204
+ + P RELA Q + K+ + VV P R + I+V TPG
Sbjct: 437 IVLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQRRMQTNPCQILVATPG 496
Query: 205 TVLDLIRRKM---LNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATF 261
+ D I L +KV VLDEAD++LD G R+ +PK Q LFSAT
Sbjct: 497 RLKDHIENTSGFATRLMGVKVLVLDEADHLLD-MGFRRDIERIIAAVPKQRQTFLFSATV 555
Query: 262 DDGVRQY---AKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEH---KYTILSELYGLL 315
+ VRQ A K ++ + + + Q++M + H + +L E
Sbjct: 556 PEEVRQICHVALKRDHEFINCVQEGSGETHQKVTQMYMIASLDRHFSLLHVLLKEHIADN 615
Query: 316 TIGSSIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTN 375
IIF T L+ L + V +H R R+ D+FR+ ++ +L+T++
Sbjct: 616 VDYKVIIFCTTAMVTRLVADLLSQLSLNVREIHSRKPQSYRTRVSDEFRKSKAIILVTSD 675
Query: 376 VLARGIDIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEV 435
V ARG+D P VS+VV LP +D Y+H + + + +
Sbjct: 676 VSARGVDYPDVSLVVQMGLP------SDREQYIHRLGRTGRKGKEGEGVLLLAPWEEY-F 728
Query: 436 LSAIQKYFGDIEITKVPTDDLD 457
+S+++ D+ ITK P +D
Sbjct: 729 MSSVK----DLPITKSPLPPID 746
>At3g09620 [A] KOG0334 RNA helicase
Length = 989
Score = 107 bits (267), Expect = 4e-23
Identities = 98/350 (28%), Positives = 160/350 (45%), Gaps = 60/350 (17%)
Query: 97 MKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRV--DPNVNSTQA-- 152
+ ++KP IQ +ALP+++ + I +++G+GKT F L ML + P V +
Sbjct: 414 LNYEKPMPIQAQALPIIMSG--RDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPI 471
Query: 153 -ICLSPARELARQTLEVIQEMGKFTKTSSQLVVP--------DSFERNKPITANIVVGTP 203
+ ++P REL +Q + ++ KF+K + VP K T IVV TP
Sbjct: 472 GLVMAPTRELVQQ---IYSDIRKFSKALGIICVPVYGGSGVAQQISELKRGT-EIVVCTP 527
Query: 204 GTVLDLI---RRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSAT 260
G ++D++ K+ NL + V+DEAD M D G Q R+ + + Q VLFSAT
Sbjct: 528 GRMIDILCTSSGKITNLRRVTYLVMDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSAT 586
Query: 261 FDDGVRQYAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYG-LLTIGS 319
F V A+K++ V +++ V I QL ++ E +++ L EL G G
Sbjct: 587 FPRQVETLARKVLNKPVEIQVGGRSVVNKDITQL-VEIRPESERFSRLLELLGEWYEKGK 645
Query: 320 SIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLAR 379
++FV++ +++ I DF+ +LI T+V AR
Sbjct: 646 VLVFVRS-----------------------------QEKSISDFKSDVCNLLIATSVAAR 676
Query: 380 GIDIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHD 429
G+D+ + +VVN+D PN D YVH A++FI +
Sbjct: 677 GLDVKELELVVNFD---APNHYED---YVHRVGRTGRAGRKGCAVTFISE 720
>YLR276c [A] KOG0346 RNA helicase
Length = 594
Score = 106 bits (265), Expect = 7e-23
Identities = 99/405 (24%), Positives = 177/405 (43%), Gaps = 78/405 (19%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRV--------DPNVNST 150
FQ P+ IQ A+PL ++ ++IA++ +G+GKT A+ + ++ + + N T
Sbjct: 37 FQYPTLIQSHAIPLALQQK-RDIIAKAATGSGKTLAYLIPVIETILEYKKTIDNGEENGT 95
Query: 151 QAICLSPARELARQTLEVIQEMGKFTKTSSQLVVPDSFERNKPITA------NIVVGTPG 204
I L P RELA+Q V++++ + + + S + ++ I+VGTPG
Sbjct: 96 LGIILVPTRELAQQVYNVLEKLVLYCSKDIRTLNISSDMSDSVLSTLLMDQPEIIVGTPG 155
Query: 205 TVLDLIRRKM--LNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLP--KTCQLVLFSAT 260
+LDL++ K+ ++L +K V+DE D +L G D ++ ++LP K Q L SAT
Sbjct: 156 KLLDLLQTKINSISLNELKFLVVDEVDLVLTF-GYQDDLNKIGEYLPLKKNLQTFLMSAT 214
Query: 261 FDDGVRQYAKKIIPTAVSLELQKNEVNVSAIKQL-FMDCDNEEHKYTILSELYGLLTI-G 318
+D ++ +K + L+ E+N + K L + +E K+ + ++ L I G
Sbjct: 215 LNDDIQALKQKFCRSPAILKFNDEEINKNQNKLLQYYVKVSEFDKFLLCYVIFKLNLIKG 274
Query: 319 SSIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTN--- 375
++IFV L +++ G + IL+ +L R ++D F + ++LI T+
Sbjct: 275 KTLIFVNNIDRGYRLKLVMEQFGIKSCILNSELPVNSRQHIVDQFNKNVYQLLIATDDTE 334
Query: 376 -----------------------------------------------VLARGIDIPSVSM 388
++RG+D +V+
Sbjct: 335 YIKEEDDEIEEGHNTENQEEKSLEGEPENDKKPSKKKKVQVKKDKEYGVSRGVDFKNVAC 394
Query: 389 VVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSF 433
V+N+DLPT +YVH AISF+ K F
Sbjct: 395 VLNFDLPT------TAKSYVHRVGRTARGGKTGTAISFVVPLKEF 433
>ECU10g0690 [A] KOG0345 ATP-dependent RNA helicase
Length = 463
Score = 106 bits (265), Expect = 7e-23
Identities = 88/309 (28%), Positives = 160/309 (51%), Gaps = 30/309 (9%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLT-------RVDPNVNSTQ 151
F K +++Q K +P +++ +++ QS +GTGKT AF +L+ R P V
Sbjct: 24 FGKMTEVQLKCIPEVLKGK--DVVVQSPTGTGKTMAFLAPILSCIYDGKGRGRPGVT--- 78
Query: 152 AICLSPARELARQTLEVIQEMGKFTKTSSQLV----VPDSFERNKPITANIVVGTPGTVL 207
A+ ++P RELA Q EV G F + + + ++R K +I VGTPG +L
Sbjct: 79 AVVITPTRELALQIREVA---GLFDVKCECFIGGMSIEEDYKRMKE-EFSIAVGTPGRLL 134
Query: 208 DLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQ 267
+++ ++ S+ VLDEAD +L G ++ +++ LP+ LFSAT +D V +
Sbjct: 135 EIVGKETKKFSSLSHLVLDEADKLLG-FGFEEKLMQLLAKLPRNRVTGLFSATRNDSVDK 193
Query: 268 YAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTK 327
++ + VS+ + NE+ V A++ + + + K +L + ++T I+F T
Sbjct: 194 LSRVFLRNPVSINVGNNEMPV-ALEYIVV---SPMEKLLVLMD---IVTGRRCIVFFATC 246
Query: 328 QTANLLYAKLKKEGH-QVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSV 386
+ + + G + +HG + +R+R+ ++F + R +L T+V ARGID V
Sbjct: 247 SEVDFFSGLVSRAGFGNICKIHGKISQDERNRVYEEFFQ-RDGLLFCTDVAARGIDFRGV 305
Query: 387 SMVVNYDLP 395
+VV++D+P
Sbjct: 306 DLVVHFDVP 314
>CE29052 [A] KOG0335 ATP-dependent RNA helicase
Length = 1156
Score = 106 bits (264), Expect = 9e-23
Identities = 88/333 (26%), Positives = 155/333 (46%), Gaps = 40/333 (12%)
Query: 97 MKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRV------DPNVN-- 148
MK +P+ IQ + ++ ++++A + +G+GKT AF + + ++ D +V
Sbjct: 754 MKMNRPTPIQRASFFPIMHG--NDVVACAHTGSGKTLAFLIPFVIKLMEEFEKDRDVTDE 811
Query: 149 --STQAICLSPARELARQTLEVIQEMGKFTKTSSQLVVPDSFERNKPIT-------ANIV 199
S + + ++P REL QT +++ T L + RN + NI+
Sbjct: 812 KPSPRLLIVAPTRELVNQTFTTARQLTYETGLKCGLAF-GGYSRNANVQHLRSFSQLNIL 870
Query: 200 VGTPGTVLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFL----PKTCQLV 255
V T G + D + ++L +K VLDEAD M+D G++ V K + +T Q V
Sbjct: 871 VATMGRLQDFVNAGEVSLSKMKYIVLDEADRMVDSNDFGEE---VSKIIGSPGERTQQTV 927
Query: 256 LFSATFDDGVRQ--YAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHK---YTILSE 310
LFSA+F + ++ K + L++ K I Q + E + Y +L
Sbjct: 928 LFSASFSEDLQSDDLPKFVKEGYTMLQVDKFGTANEKIDQKILPVPRTEKRDAIYKLLGI 987
Query: 311 LYGLLTI--------GSSIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDD 362
+T+ ++IFV + + + L A + G +H + RDR +DD
Sbjct: 988 DENTVTLLPDAPIEKQKTLIFVNSVKFCDTLAALISSAGVSTISMHSYQNQEQRDRTLDD 1047
Query: 363 FREGRSKVLITTNVLARGIDIPSVSMVVNYDLP 395
FR G+ + ++ +NV ARG++I + VVNYD+P
Sbjct: 1048 FRRGKYQCMVASNVCARGLNIAGLDHVVNYDMP 1080
>At5g63630 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 522
Score = 105 bits (263), Expect = 1e-22
Identities = 110/400 (27%), Positives = 173/400 (42%), Gaps = 51/400 (12%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTML--------TRVDPNVNST 150
++ + +QE LP++++ +++A++++GTGKT AF L + T D
Sbjct: 74 YETMTVVQEATLPIILKGK--DVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPI 131
Query: 151 QAICLSPARELARQTLEVIQEMGKFTKTSSQLVVPDSF------ERNKPITANIVVGTPG 204
A+ + P RELA Q + K+ + VV +R + I+V TPG
Sbjct: 132 LALVICPTRELANQAATEANTLLKYHPSIGVQVVIGGTRLGLEQKRMQTNPCQILVATPG 191
Query: 205 TVLDLIRRK---MLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATF 261
+ D I L +KV VLDEAD++LD G R+ +PK Q LFSAT
Sbjct: 192 RLKDHIENTPGFATRLKGVKVLVLDEADHLLD-MGFRKDIERIISAVPKERQTFLFSATV 250
Query: 262 DDGVRQYAKKIIPTAVSLELQKNEVNV---------SAIKQLFMDCDNEEH---KYTILS 309
+ VRQ V+L VN ++Q+ M + H YT+L
Sbjct: 251 PEEVRQIC------LVALRRDHEFVNCVHEGTIETHQQVRQMHMIASLDRHFSLLYTLLR 304
Query: 310 ELYGLLTIGSSIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSK 369
E I+F T L+ L + V +H R R+ ++FR+ +
Sbjct: 305 EHIMGNVDYKVIVFCTTAMVTKLVADLLGELNLNVREIHSRKPQSYRTRVSNEFRKSKGL 364
Query: 370 VLITTNVLARGIDIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHD 429
+L+T++V ARG+D P V++V+ LP D Y+H I +
Sbjct: 365 ILVTSDVSARGVDYPDVTLVLQVGLP------KDREQYIHRLGRTGRKGKEGEGILLLAP 418
Query: 430 KKSFEVLSAIQKYFGDIEITKVPTDDLDEMETIVKKALKA 469
+ + LS+++ D+ ITK P +D ET VKK KA
Sbjct: 419 WEEY-FLSSLK----DLPITKSPLPSIDP-ET-VKKVQKA 451
>At1g71370 [A] KOG0345 ATP-dependent RNA helicase
Length = 558
Score = 105 bits (262), Expect = 1e-22
Identities = 91/356 (25%), Positives = 159/356 (44%), Gaps = 35/356 (9%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRV------DPNVNSTQA 152
F+ + +Q + +P L +++ + +G+GKT AF L + + P +
Sbjct: 36 FEVCTPVQAETIPFLCSHK--DVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMG 93
Query: 153 ICLSPARELARQTLEVIQEMGKFTKTSSQLVVPDSFERNKPIT------ANIVVGTPGTV 206
+ +SP REL+ Q +V + + +++ E + AN+++GTPG +
Sbjct: 94 VIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEGANLLIGTPGRL 153
Query: 207 LDLIRR-KMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGV 265
D+++R + L+ ++++ +LDEAD +LD G Q + LPK + LFSAT V
Sbjct: 154 SDMMKRMEFLDFRNLEILILDEADRLLD-MGFQKQVNYIISRLPKQRRTGLFSATQTQAV 212
Query: 266 RQYAKKIIPTAVSL--ELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSS--- 320
AK + A+ + + S + ++ C+ ++ S+L LL +
Sbjct: 213 ADLAKAGLRNAMEVISGAESKSKTSSGLYCEYLKCEADQKS----SQLVHLLIENKNKKL 268
Query: 321 IIFVKTKQTANLLYAKLKKEGHQVSI----LHGDLQSQDRDRLIDDFREGRSKVLITTNV 376
++F T + L K SI HG + + RD + F E S VL+ T+V
Sbjct: 269 VVFFMTCACVDYWGLVLSKIPTLKSISFFSTHGKMDQKGRDTALASFTEASSGVLLCTDV 328
Query: 377 LARGIDIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKS 432
ARG+DIP + VV YD P DP ++H AI F+ K++
Sbjct: 329 AARGLDIPGIDYVVQYDPP------QDPDVFIHRVGRTARMERQGRAIVFLMPKET 378
>SPAC1093.05 [A] KOG0343 RNA Helicase
Length = 735
Score = 105 bits (261), Expect = 2e-22
Identities = 82/322 (25%), Positives = 159/322 (48%), Gaps = 28/322 (8%)
Query: 103 SKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVD----PNVNSTQAICLSPA 158
++IQ++ +P ++ +++ +++G+GKT AF + ++ + +++ A+ +SP
Sbjct: 63 TEIQKQCIPSALKG--RDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPT 120
Query: 159 RELARQTLEVIQEMGKFTKTSSQLVVPDSF---ERNKPITANIVVGTPGTVLDLIRRKM- 214
RELA QT E + ++G+ S+ L++ + E+ + NI+V TPG +L I + +
Sbjct: 121 RELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERLSRMNILVCTPGRLLQHIDQAVN 180
Query: 215 LNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAKKIIP 274
+ +++ +LDEAD +LD G + LP Q +LFSAT V+ A+ +
Sbjct: 181 FDTSGLQMLILDEADRILD-MGFRTTLDAIVSSLPVHRQTMLFSATQTKSVKDLARLSLQ 239
Query: 275 TAVSLELQKNEVNV--SAIKQLFMDCDNEEHKYTILSELYGLLTIG---SSIIFVKTKQT 329
+ + +N+ + S + Q ++ E L L+G + +I+F+ + +
Sbjct: 240 NPDFISVHENDTSSTPSNLNQFYLTVPLTEK----LDILFGFIRTHLKFKTIVFLSSCKQ 295
Query: 330 ANLLYAKLKKEGHQVSILH--GDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVS 387
+Y ++ +S+LH G + R + F R VL T+++ARG+D P+V
Sbjct: 296 VRFVYETFRRMRPGISLLHLHGKQKQTTRTEVTAKFTSSRHVVLFCTDIVARGLDFPAVD 355
Query: 388 MVVNYDLPTLPNGQADPSTYVH 409
V+ D P D TY+H
Sbjct: 356 WVIQLDAP------EDVDTYIH 371
>Hs8922976 [A] KOG0330 ATP-dependent RNA helicase
Length = 540
Score = 104 bits (260), Expect = 2e-22
Identities = 91/337 (27%), Positives = 163/337 (48%), Gaps = 53/337 (15%)
Query: 101 KPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRV--DPNVNST-----QAI 153
+P+ +Q +P L+R +++ +++G+GKT ++ L +L R+ P+++S + +
Sbjct: 150 QPTTVQSSTIPSLLRG--RHVVCAAETGSGKTLSYLLPLLQRLLGQPSLDSLPIPAPRGL 207
Query: 154 CLSPARELARQTLEVIQEMGKFTKTSSQLVVPD----------SFERNKPITANIVVGTP 203
L P+RELA+Q V Q +G+ S L+V D + ++ +A+++V TP
Sbjct: 208 VLVPSRELAQQVRAVAQPLGR----SLGLLVRDLEGGHGMRRIRLQLSRQPSADVLVATP 263
Query: 204 GTVLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKK-------------FLPK 250
G + ++ ++++L + VLDEAD +LD+ L ++K F PK
Sbjct: 264 GALWKALKSRLISLEQLSFLVLDEADTLLDESFLELVDYILEKSHIAEGPADLEDPFNPK 323
Query: 251 TCQLVLFSATFDDGVRQYAKKII-PTAVS-LELQKNEVNVSAIKQLFMDCDNEEHKYTIL 308
QLVL ATF +GV Q K+ P AV+ + K + +KQ F+ + +
Sbjct: 324 A-QLVLVGATFPEGVGQLLNKVASPDAVTTITSSKLHCIMPHVKQTFLRLKGADK----V 378
Query: 309 SELYGLLT----------IGSSIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDR 358
+EL +L G+ ++F + T N L L Q L G + + R
Sbjct: 379 AELVHILKHRDRAERTGPSGTVLVFCNSSSTVNWLGYILDDHKIQHLRLQGQMPALMRVG 438
Query: 359 LIDDFREGRSKVLITTNVLARGIDIPSVSMVVNYDLP 395
+ F++ +L+ T++ +RG+D V +VVNYD P
Sbjct: 439 IFQSFQKSSRDILLCTDIASRGLDSTGVELVVNYDFP 475
>At4g16630 [A] KOG0338 ATP-dependent RNA helicase
Length = 683
Score = 104 bits (260), Expect = 2e-22
Identities = 103/369 (27%), Positives = 161/369 (42%), Gaps = 67/369 (18%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGK--------------------TAAFSLT 138
++KP+ IQ + +P RD + A + +G+GK TAAF+L
Sbjct: 187 YKKPTPIQVQFIPQEWRD----LCASAITGSGKVSTRLMVLCNTEILFRYLTNTAAFALP 242
Query: 139 MLTRV---DPNVNSTQAICLSPARELARQTLEVIQEMGKFTKTSSQLVVPDSFERNKPIT 195
L R+ V +T+ + L+P RELA Q +IQ + +FT L+V R + +
Sbjct: 243 TLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVV 302
Query: 196 A----NIVVGTPGTVLDLIRRKM-LNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPK 250
+IVV TPG ++D +R M ++L + V +LDEAD +L + G + + + PK
Sbjct: 303 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL-QTGFATEITELVRLCPK 361
Query: 251 TCQLVLFSATFDDGVRQYAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSE 310
Q +LFSAT + V++ K +S K L + D + L+E
Sbjct: 362 RRQTMLFSATMTEEVKELVK-----------------LSLNKPLRLSADPSARRPPGLTE 404
Query: 311 LYGLLTIGSSIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRL----------I 360
Y L TKQ A+ L G + + LHG+L R + +
Sbjct: 405 EY-LREFFVPSCASGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDVRNLGTSALFSL 463
Query: 361 DDFREGRSKVLITTNVLARGIDIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXX 420
+ FR+ LI T+V ARG+DI V V+NY P + +YVH
Sbjct: 464 ELFRKQEVDFLIATDVAARGLDIIGVQTVINYACP------REIDSYVHRVGRTARAGRE 517
Query: 421 XVAISFIHD 429
A++F+ D
Sbjct: 518 GYAVTFVTD 526
>CE27030 [A] KOG0338 ATP-dependent RNA helicase
Length = 763
Score = 104 bits (259), Expect = 3e-22
Identities = 83/334 (24%), Positives = 155/334 (45%), Gaps = 43/334 (12%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRV---DPNVNSTQAICL 155
+ P+ IQ+ +P+ + ++ A + +GTGKTAAF L +L R+ + T+ + L
Sbjct: 168 YSDPTPIQQACIPVALTGK--DICACAATGTGKTAAFVLPILERMIYRPKGASCTRVLVL 225
Query: 156 SPARELARQTLEVIQEMGKFTKTSS-------QLVVPDSFERNKPITANIVVGTPGTVLD 208
P RELA Q +V +++ F + L ++ R+ P ++VV TPG ++D
Sbjct: 226 VPTRELAIQVFQVFRKLSTFIQLEVCLCAGGLDLKAQEAALRSGP---DVVVATPGRLID 282
Query: 209 LIR-------------------------RKMLNLGSIKVFVLDEADNMLDKQGLGDQCIR 243
+ RK+ + + +V VLDEAD ML+ + DQ
Sbjct: 283 HLHNSPSFNLSNIEVFFKTPNIPPKKNSRKICKIPNFQVLVLDEADRMLE-EAFRDQMNE 341
Query: 244 VKKFLPKTCQLVLFSATFDDGVRQYAKKIIPTAVSLELQKNEVNVSAIKQLFMD--CDNE 301
+ + + Q +LFSAT + + + A + V + + +N ++Q F+ E
Sbjct: 342 LIRLCAQNRQTLLFSATMTEEIDELASMSLQKPVKIFINENTDTALKLRQEFIRIRAGRE 401
Query: 302 EHKYTILSELYGLLTIGSSIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLID 361
+ +++ L ++I+FV+TK+ + L G +V + L R +
Sbjct: 402 TDREAMVAALVTRTFQTNTIVFVRTKKDCQRMQILLGLLGIKVGQMQSSLTQGQRIESLS 461
Query: 362 DFREGRSKVLITTNVLARGIDIPSVSMVVNYDLP 395
F++ VL++T++ +RG+DI V V+N ++P
Sbjct: 462 KFKKAEIDVLVSTDLASRGLDIEGVQTVINMNMP 495
>7293369 [A] KOG0343 RNA Helicase
Length = 805
Score = 103 bits (257), Expect = 6e-22
Identities = 101/384 (26%), Positives = 172/384 (44%), Gaps = 37/384 (9%)
Query: 98 KFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPN----VNSTQAI 153
KF P+++Q ++ ++ +++ + +G+GKT AF + +L + N + AI
Sbjct: 91 KFVHPTQVQRDSIGPALQGK--DVLGAAITGSGKTLAFLIPVLEHLFMNKWSRTDGVGAI 148
Query: 154 CLSPARELARQTLEVIQEMGKFTKTSSQLVVPDS---FERNKPITANIVVGTPGTVLD-L 209
+SP RELA Q E ++++GK S+ L++ FER + NI++ TPG +L +
Sbjct: 149 IISPTRELAYQIFETLKKVGKHHDFSAGLIIGGKNLKFERTRMDQCNILICTPGRLLQHM 208
Query: 210 IRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYA 269
+ N ++++ VLDEAD LD G + + P Q +LFSAT + V+ A
Sbjct: 209 DENPLFNTSTMEMLVLDEADRCLD-MGFQKTLNSIIENFPPVRQTLLFSATQTNTVQDLA 267
Query: 270 KKIIPTAV-------------SLELQKN-EVNVSAIKQLFMDCD---NEEHKYTILSELY 312
+ + V S +K V A+ +L N E K T+L
Sbjct: 268 RLNLKDPVYVGYGGATPREEPSASTKKTPNTAVLAVPELLQQSYVVLNLEDKITMLWSFI 327
Query: 313 GLLTIGSSIIFVKTKQTANLLYAKLKK--EGHQVSILHGDLQSQDRDRLIDDFREGRSKV 370
I+FV + + A LY K G + L+G L R + +DF V
Sbjct: 328 KNHLKQKIIVFVASCKQAKYLYEIFCKLRPGSPLLALYGTLHQDRRIAIYEDFLRKSHVV 387
Query: 371 LITTNVLARGIDIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDK 430
+ +T+V +RG+D P+V+ VV D P D S Y+H + +
Sbjct: 388 MFSTDVASRGLDFPAVNWVVQLDCP------EDVSQYIHRAGRSARNKTRGECLLVLTPS 441
Query: 431 KSFEVLSAIQKYFGDIEITKVPTD 454
+ ++SA+++ +I+I V D
Sbjct: 442 EEEYMISALKEQL-NIDIRCVQID 464
>CE26853 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 544
Score = 103 bits (256), Expect = 7e-22
Identities = 97/366 (26%), Positives = 170/366 (45%), Gaps = 37/366 (10%)
Query: 56 SEYEVKVNLADLQADANSPLYSVXXXXXXXXXXXXXXXXYAMKFQKPSKIQEKALPLLIR 115
SE+ K A L+ N+ L + F ++IQ K++ L+
Sbjct: 60 SEFLTKTTFASLEGKVNANLLKAVQ---------------GLGFTTMTEIQAKSIDPLLE 104
Query: 116 DPPHNMIAQSQSGTGKTAAFSLTMLTRVDP----NVNSTQAICLSPARELARQTLEVIQE 171
+++A +++G+GKT AF L + + N T I +SP REL+ QT V+ E
Sbjct: 105 GK--DVLASAKTGSGKTLAFLLPAIELLHKLNWKQHNGTGVIIVSPTRELSMQTYGVLSE 162
Query: 172 MGKFTKTSSQLVVPDS---FERNKPITA-NIVVGTPGTVLDLIRRK-MLNLGSIKVFVLD 226
+ + + + LV+ S E++K +I+V TPG +LD ++ + ++K ++D
Sbjct: 163 LLEGSNLTYGLVMGGSNRSAEKDKLAKGVSILVATPGRLLDHLQNTDNFLVRNMKCLIID 222
Query: 227 EADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAKKII---PTAVSLELQK 283
EAD +LD G + +V + LPK Q +LFSAT V + K + P VS+ +
Sbjct: 223 EADRILDI-GFEIEMQQVLRHLPKQRQSMLFSATHSPKVDELVKLALHSNPVRVSVHEKA 281
Query: 284 NEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQTANLLYAKLKKEGHQ 343
E V ++Q ++ +++ + + L T ++F + + + L
Sbjct: 282 EEATVEGLQQGYIVAPSDKRLLLLFTFLKKNKT-KKVMVFFSSCNSVKFHHELLNYIDIP 340
Query: 344 VSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVNYDLPTLPNGQAD 403
+HG + Q R F + + +L+ T+V ARG+DIP+V +V YD PT +
Sbjct: 341 CMSIHGKQKQQKRTTTFFQFCQAETGILLCTDVAARGLDIPAVDWIVQYD-PT-----DE 394
Query: 404 PSTYVH 409
P Y+H
Sbjct: 395 PREYIH 400
>7300808 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 663
Score = 103 bits (256), Expect = 7e-22
Identities = 87/328 (26%), Positives = 157/328 (47%), Gaps = 28/328 (8%)
Query: 97 MKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDP----NVNSTQA 152
M F + ++IQ K+L L++ +++ +Q+G+GKT AF + + ++ N T
Sbjct: 188 MGFTEMTEIQSKSLTPLLKG--RDLVGAAQTGSGKTLAFLIPAVELINKLRFMPRNGTGV 245
Query: 153 ICLSPARELARQTLEVIQEMGKFTKTSSQLVVPDSFERNKPITA-------NIVVGTPGT 205
I +SP REL+ QT V++E+ + LV+ S N+ + + NI+V TPG
Sbjct: 246 IIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGS---NRQVESEKLGKGINILVATPGR 302
Query: 206 VLDLIRRKMLNL-GSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFD-- 262
+LD ++ L +++ ++DE D +L+ G ++ ++ LPK Q +LFSAT
Sbjct: 303 LLDHLQNSPDFLYKNLQCLIIDEVDRILEI-GFEEELKQIINLLPKRRQTMLFSATQTAR 361
Query: 263 -DGVRQYAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSI 321
+ + + A K P V + ++ V ++Q ++ C +E+ + +L +
Sbjct: 362 IEALSKLALKSEPIYVGVHDNQDTATVDGLEQGYIVCPSEK-RLLVLFTFLKKNRKKKVM 420
Query: 322 IFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGI 381
+F + + + V+ +HG + R F S +L+ T+V ARG+
Sbjct: 421 VFFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTTTFFQFCNAESGILLCTDVAARGL 480
Query: 382 DIPSVSMVVNYDLPTLPNGQADPSTYVH 409
DIP V +V YD P DP Y+H
Sbjct: 481 DIPQVDWIVQYDPPD------DPREYIH 502
>YMR290c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 505
Score = 102 bits (254), Expect = 1e-21
Identities = 84/327 (25%), Positives = 157/327 (47%), Gaps = 25/327 (7%)
Query: 97 MKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLT-----RVDPNVNSTQ 151
M F + +Q + +P L+ +++ +++G+GKT AF + + + P N T
Sbjct: 60 MGFTTMTSVQARTIPPLLAG--RDVLGAAKTGSGKTLAFLIPAIELLHSLKFKPR-NGTG 116
Query: 152 AICLSPARELARQTLEVIQEMGKFTKTSSQLVVPDSFERNKPIT----ANIVVGTPGTVL 207
I ++P RELA Q V +E+ +F + +V+ + R + N+++ TPG +L
Sbjct: 117 IIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEAEKLMKGVNMLIATPGRLL 176
Query: 208 DLIRR-KMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLP-KTCQLVLFSATFDDGV 265
D ++ K ++K ++DEAD +L+ G D+ ++ K LP + Q +LFSAT V
Sbjct: 177 DHLQNTKGFVFKNLKALIIDEADRILEI-GFEDEMRQIIKILPNEDRQSMLFSATQTTKV 235
Query: 266 RQYAKKII---PTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSII 322
A+ + P +++ + + ++Q ++ CD+++ ++ +L I+
Sbjct: 236 EDLARISLRPGPLFINVVPETDNSTADGLEQGYVVCDSDK-RFLLLFSFLKRNQKKKIIV 294
Query: 323 FVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGID 382
F+ + + L V LHG + Q R +F +LI T+V ARG+D
Sbjct: 295 FLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILICTDVAARGLD 354
Query: 383 IPSVSMVVNYDLPTLPNGQADPSTYVH 409
IP+V ++ +D P DP Y+H
Sbjct: 355 IPAVDWIIQFDPPD------DPRDYIH 375
>At5g54910 [A] KOG0343 RNA Helicase
Length = 739
Score = 101 bits (252), Expect = 2e-21
Identities = 98/384 (25%), Positives = 175/384 (45%), Gaps = 26/384 (6%)
Query: 98 KFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQ----AI 153
K+ + +Q A+P + +++ +++G+GKT AF + +L ++ S + I
Sbjct: 90 KYVDMTDVQSAAIPHALCG--RDILGAARTGSGKTLAFVIPILEKLHRERWSPEDGVGCI 147
Query: 154 CLSPARELARQTLEVIQEMGKFTKTSSQLVVPD----SFERNKPITANIVVGTPGTVLD- 208
+SP RELA QT V+ ++GKF K S+ L++ E+ + NI+V PG +L
Sbjct: 148 IISPTRELAAQTFGVLNKVGKFHKFSAGLLIGGREGVDVEKERVHEMNILVCAPGRLLQH 207
Query: 209 LIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQY 268
+ +++ +LDEAD +LD G Q + LPK Q +LFSAT V+
Sbjct: 208 MDETPNFECPQLQILILDEADRVLDSAFKG-QLDPIISQLPKHRQTLLFSATQTKKVKDL 266
Query: 269 AKKII--PTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKT 326
A+ + P +S+ + +++ Q M E+ K +L ++F+ T
Sbjct: 267 ARLSLRDPEYISVHAEAVTATPTSLMQTVMIVPVEK-KLDMLWSFIKTHLNSRILVFLST 325
Query: 327 KQTANLLYAKLKK--EGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDI- 383
K+ ++ K G + LHG + + R + F E R VL T+VLARG+D
Sbjct: 326 KKQVKFVHEAFNKLRPGIPLKSLHGKMSQEKRMGVYSQFIE-RQSVLFCTDVLARGLDFD 384
Query: 384 PSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYF 443
+V VV D P D ++Y+H ++ F+ + +++ +Q+
Sbjct: 385 KAVDWVVQVDCP------EDVASYIHRVGRTARFYTQGKSLLFLTPSEE-KMIEKLQEAK 437
Query: 444 GDIEITKVPTDDLDEMETIVKKAL 467
I++ K L E+ ++ L
Sbjct: 438 VPIKLIKANNQKLQEVSRLLAALL 461
>SPAC22F3.08c [A] KOG0344 ATP-dependent RNA helicase
Length = 481
Score = 100 bits (249), Expect = 5e-21
Identities = 86/354 (24%), Positives = 166/354 (46%), Gaps = 28/354 (7%)
Query: 105 IQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNV-NSTQAICLSPARELAR 163
IQ A+P + +++A + +G+GKT A+ +L ++ +V +AI ++P REL
Sbjct: 72 IQRYAIPTI--GSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCE 129
Query: 164 QTLEVIQEMG--------KFTKTSSQLVVPDSFERNKPITANIVVGTPGTVLDLIRRKML 215
Q +++ + +K++ ++ R K ++ +GTP ++ I+ L
Sbjct: 130 QIYRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREK---YDMCIGTPMRLVQAIQTG-L 185
Query: 216 NLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKT--CQLVLFSATFDDGVRQYAKKII 273
+ ++ FV+DEAD + + G +Q + + C+ LFSAT V + AK +
Sbjct: 186 SFEKVEFFVMDEADRLFEP-GFIEQTDHILSACTSSNICKS-LFSATIPSRVEELAKVVT 243
Query: 274 PTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSI-IFVKTKQTANL 332
+ + + + +I Q + ++ K IL ++ + + IFV+ + A
Sbjct: 244 VDPIRIIVGLKDAATDSIDQRLLFVGSDTSKIVILRQMISNGELKPRVVIFVQDIERAKA 303
Query: 333 LYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVNY 392
LY +L + V ++HG+L R+ + FR+G VLI T++LARGID V MV+N+
Sbjct: 304 LYTELLFDEIHVGVIHGELPQAKREEALAKFRKGEIWVLIATDLLARGIDFHGVKMVINF 363
Query: 393 DLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFI--HDKKSFEVLSAIQKYFG 444
D P +Y+H A++F D + ++++ + + G
Sbjct: 364 DFP------QSVHSYIHRIGRTGRAGNTGQAVTFFTKEDGEYIKLIAGVMRSSG 411
>At1g12770_1 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 543
Score = 100 bits (249), Expect = 5e-21
Identities = 105/452 (23%), Positives = 186/452 (40%), Gaps = 80/452 (17%)
Query: 59 EVKVNLADLQADANSPLYSVXXXXXXXXXXXXXXXXYAMKFQKPSKIQEKALPLLIRDPP 118
++KV A+ SPL+S F P+ +Q A+P +I+
Sbjct: 90 KMKVVKEKKPAEIVSPLFSAKSFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKG-- 147
Query: 119 HNMIAQSQSGTGKTAAFSLTMLTRVDPNVNST-------------QAICLSPARELARQT 165
H+ + QS +G+GKT A+ L +L+ + P + QA+ ++P+REL Q
Sbjct: 148 HDAVIQSYTGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQI 207
Query: 166 LEVIQEM-GKFTKTSSQLVV--------PDSFERNKPITANIVVGTPGTVLDLIRRKMLN 216
+ ++++ G + Q +V ++ ++NKP IVVGTPG + ++ + L+
Sbjct: 208 VREVEKLLGPVHRRMVQQLVGGANRMRQEEALKKNKPA---IVVGTPGRIAEISKGGKLH 264
Query: 217 LGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTC--------------QLVLFSATFD 262
+ VLDE D +L + R+ + + K Q +L SAT
Sbjct: 265 THGCRFLVLDEVDELL-SFNFREDIHRILEHVGKRSGAGPKGEVDERANRQTILVSATVP 323
Query: 263 DGVRQYAK------------KIIP--------TAVSL---------ELQKNEVNVSAIKQ 293
V + AK K+ P +SL ++Q ++ +
Sbjct: 324 FSVIRAAKSWSHEPVLVQANKVTPLDTVQPSAPVMSLTPTTSEADGQIQTTIQSLPPALK 383
Query: 294 LFMDCDNEEHKYTILSELYGLLTIGSSIIFVK-TKQTANLLYAKLKKEGHQVSILHGDLQ 352
+ +HK L L S I F+ ++Q +++Y KL+ G + +HGDL
Sbjct: 384 HYYCISKHQHKVDTLRRCVHALDAQSVIAFMNHSRQLKDVVY-KLEARGMNSAEMHGDLG 442
Query: 353 SQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVNYDLPTLPNGQADPSTYVHXXX 412
R ++ F+ G KVL+T + ARG+D+ +VVN +LPT D Y H
Sbjct: 443 KLGRSTVLKKFKNGEIKVLVTNELSARGLDVAECDLVVNLELPT------DAVHYAHRAG 496
Query: 413 XXXXXXXXXVAISFIHDKKSFEVLSAIQKYFG 444
++ + + F ++ ++K G
Sbjct: 497 RTGRLGRKGTVVTVCEESQVF-IVKKMEKQLG 527
>At5g65900 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 633
Score = 100 bits (248), Expect = 6e-21
Identities = 87/324 (26%), Positives = 155/324 (46%), Gaps = 20/324 (6%)
Query: 97 MKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAF---SLTMLTRVDPNV-NSTQA 152
M F + ++IQ KA+P L+ +++ +++G+GKT AF ++ +L RV N T
Sbjct: 172 MGFARMTQIQAKAIPPLMMG--EDVLGAARTGSGKTLAFLIPAVELLYRVKFTPRNGTGV 229
Query: 153 ICLSPARELARQTLEVIQEMGKF-TKTSSQLVVPDSFERNKPITA---NIVVGTPGTVLD 208
+ + P RELA Q+ V +E+ K+ ++T +++ + + I A N++V TPG +LD
Sbjct: 230 LVICPTRELAIQSYGVAKELLKYHSQTVGKVIGGEKRKTEAEILAKGVNLLVATPGRLLD 289
Query: 209 -LIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQ 267
L ++K V+DEAD +L+ Q + ++ LPKT Q LFSAT V
Sbjct: 290 HLENTNGFIFKNLKFLVMDEADRILE-QNFEEDLKKILNLLPKTRQTSLFSATQSAKVED 348
Query: 268 YAKKIIPTAVSLELQ--KNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVK 325
A+ + + V +++ + EV ++Q + + +L+ L ++F
Sbjct: 349 LARVSLTSPVYIDVDEGRKEVTNEGLEQGYCVVPSAMRLLFLLTFLKRFQGKKKIMVFFS 408
Query: 326 TKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPS 385
T ++ + + G + R F + + +L+ TNV ARG+D P
Sbjct: 409 TCKSTKFHAELFRYIKFDCLEIRGGIDQNKRTPTFLQFIKAETGILLCTNVAARGLDFPH 468
Query: 386 VSMVVNYDLPTLPNGQADPSTYVH 409
V +V YD P +P+ Y+H
Sbjct: 469 VDWIVQYDPPD------NPTDYIH 486
>ECU06g1250 [A] KOG0337 ATP-dependent RNA helicase
Length = 465
Score = 99.8 bits (247), Expect = 8e-21
Identities = 87/359 (24%), Positives = 154/359 (42%), Gaps = 54/359 (15%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICLSPA 158
++ P+ IQ K +PL++ +++ ++G+GKT + + + R ++ + + + P
Sbjct: 27 YEGPTPIQRKTIPLILER--RSLMGVGRTGSGKTLCYLIPAIQRA---ISGEKTLVIVPT 81
Query: 159 RELARQTLEVIQEMGKFTKTSSQLVVPDSFERNKPITANIVVGTPGTVLDLIRRKMLNLG 218
+EL Q V++ + + + + +L I + TPG + +
Sbjct: 82 KELVIQARRVLKRLARGIEEAWKL---------------IEICTPGKIEGM--------- 117
Query: 219 SIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAKKIIPTAVS 278
S + V+DE D +L++ L R+ + L +CQ V FSAT D + V
Sbjct: 118 SADMLVVDEIDRILEEPSLKSVFDRINESL--SCQKVFFSATLPD------HPLNMKVVE 169
Query: 279 LELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQTANLLYAKLK 338
+E + NE +K F +E + +L L +I+F TK LL L
Sbjct: 170 IETRINET----VKHFFFYIPSESKEAALLRILD---KTRKTIVFAATKYAVELLLEILN 222
Query: 339 KEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVNYDLPTLP 398
K + ++ + + R DF + +L+ T+V ARG+DIP + VVNYDL
Sbjct: 223 KNNFESRGIYSSMDDEARRANFRDFNTSKFSILVVTDVAARGLDIPYLDTVVNYDL---- 278
Query: 399 NGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYFGDIEITKVPTDDLD 457
D T++H V SF+ F + + Y D+EI +P + LD
Sbjct: 279 ---CDERTFLH---RVGRVRGMGVQYSFVTYTDVFHFFNIQETYLPDVEIGTIPQEYLD 331
>CE27728 [A] KOG0346 RNA helicase
Length = 634
Score = 98.6 bits (244), Expect = 2e-20
Identities = 88/381 (23%), Positives = 175/381 (45%), Gaps = 64/381 (16%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRV-------DPNVNSTQ 151
++K +++QE + L + + N++ ++++G+GKT AF + ++ ++ D +V +
Sbjct: 109 WEKANQVQESVISLALENK--NIMGRARTGSGKTGAFLIPLVQKLIAESKTNDGSVGPS- 165
Query: 152 AICLSPARELARQTLEVIQEMGKFTKTSSQLVVPDSFERNKPI----TANIVVGTPGTVL 207
A+ ++P +EL Q ++ ++ + + + D E + +++VV TPG +L
Sbjct: 166 AVIIAPTKELITQIYKLFVKLSQALPFLQAINLCDINEEENSVWLEDRSHVVVTTPGKLL 225
Query: 208 DLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQ 267
+ + + V+DEAD +L G ++ I+++ LP T Q ++ SAT D +
Sbjct: 226 RMCSLRPEYCTLVSYLVMDEADLLLSF-GYEEEMIKIRSKLPPTYQCLMTSATLKDDMTT 284
Query: 268 YAKKIIPT--AVSLELQKNEV-NVSAIKQLFMDCDNEEHKYTILSELYGL-LTIGSSIIF 323
KK+ T ++++L + ++ N + Q + C ++E ++ IL ++ L L +G SI+F
Sbjct: 285 -LKKLFMTGPVITIKLTEGDLPNSDQLTQYQLTCGSDEERFAILVAMFKLKLIVGRSILF 343
Query: 324 VKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNV------- 376
V T L L+ G + IL+ + + R +I+ F EG +++I ++V
Sbjct: 344 VNTIDRCYKLMLILRVFGLKSCILNSAMPANSRCHVINQFNEGSYQIVIASDVSDADGSK 403
Query: 377 -------------------------------LARGIDIPSVSMVVNYDLPTLPNGQADPS 405
++RGID VS VVN+D P +
Sbjct: 404 LKEEIAGKSDEKPEKDEKKGKKASKLDKESGVSRGIDFHHVSNVVNFDFPETTD------ 457
Query: 406 TYVHXXXXXXXXXXXXVAISF 426
Y+H A+SF
Sbjct: 458 AYIHRVGRTARGFNKGTALSF 478
>7295505 [A] KOG0346 RNA helicase
Length = 560
Score = 98.2 bits (243), Expect = 2e-20
Identities = 99/400 (24%), Positives = 186/400 (45%), Gaps = 77/400 (19%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRV-DPNVNSTQ----AI 153
+Q+P+ IQ A+PLL+ +++ ++++G+GKTA ++L ++ ++ + +N+++ A+
Sbjct: 29 WQQPTLIQSTAIPLLLEG--KDVVVRARTGSGKTATYALPLIQKILNSKLNASEQYVSAV 86
Query: 154 CLSPARELARQTLEVIQEM----GKFTKTSSQLVVPDSFERNKPIT--------ANIVVG 201
L+P ++L RQ+ +VI+++ GK + + + DS N +T +IVV
Sbjct: 87 VLAPTKKLCRQSRKVIEQLVESCGKVVRVAD---IADS--SNDTVTQRHALSESPDIVVA 141
Query: 202 TPGTVLDLIRR-KMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSAT 260
TP +L +++L ++ V+DEAD ++ G R+ K LP Q VL SAT
Sbjct: 142 TPANLLAYAEAGSVVDLKHVETLVVDEAD-LVFAYGYEKDFKRLIKHLPPIYQAVLVSAT 200
Query: 261 FDDGVRQYAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSE------LYGL 314
D V + + V+L+L++ E+ + D H+ + E LY L
Sbjct: 201 LTDDVVRMKGLCLNNPVTLKLEEPEL---------VPQDQLSHQRILAEENDKPAILYAL 251
Query: 315 LTI----GSSIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKV 370
L + G SIIFV + + L++ G + +L+ +L + R I F +G +
Sbjct: 252 LKLRLIRGKSIIFVNSIDRCYKVRLFLEQFGIRACVLNSELPANIRIHTISQFNKGTYDI 311
Query: 371 LITT-------------------------NVLARGIDIPSVSMVVNYDLPTLPNGQADPS 405
+I + + +RGID V+ V+N+D P D +
Sbjct: 312 IIASDEHHMEKPGGKSATNRKSPRSGDMESSASRGIDFQCVNNVINFDFP------RDVT 365
Query: 406 TYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYFGD 445
+Y+H +SF+ K+S +V +++K D
Sbjct: 366 SYIHRAGRTARGNNKGSVLSFVSMKES-KVNDSVEKKLCD 404
>At5g62190 [A] KOG0331 ATP-dependent RNA helicase
Length = 671
Score = 96.7 bits (239), Expect = 7e-20
Identities = 93/343 (27%), Positives = 155/343 (45%), Gaps = 30/343 (8%)
Query: 120 NMIAQSQSGTGKTAAFSLTMLTRVDPNV----------NSTQAICLSPARELARQTLEVI 169
+++ ++++G GKT AF L +L + S + L P RELA+Q
Sbjct: 135 DLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADF 194
Query: 170 QEMGKFTKTSSQ-LVVPDSF---ERNKPITANIVVGTPGTVLDLIRRKMLNLGSIKVFVL 225
G SS L DS+ E +IVVGTPG + D I R+ L+ ++ VL
Sbjct: 195 DAYGGSLGLSSCCLYGGDSYPVQEGKLKRGVDIVVGTPGRIKDHIERQNLDFSYLQFRVL 254
Query: 226 DEADNMLDKQGLGDQCIRVKKFLPKT-CQLVLFSATFDDGVRQYAKKIIPT-AVSLELQK 283
DEAD ML + D + + K T Q +LFSAT V+ + + + +++L
Sbjct: 255 DEADEMLRMGFVEDVELILGKVEDSTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDLVG 314
Query: 284 NEVNVSA--IKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQTANLLYAKLKKEG 341
N+ ++ ++ + + C+ I + + G +IIF +TK + L L +G
Sbjct: 315 NDKMKASNSVRHIAIPCNKAAMARLIPDIISCYSSGGQTIIFAETKVQVSELSGLL--DG 372
Query: 342 HQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVNYDLPTLPNGQ 401
+ LHG++ R+ + FR G+ L+ TNV ARG+DI V +++ + P
Sbjct: 373 SRA--LHGEIPQSQREVTLAGFRNGKFATLVATNVAARGLDINDVQLIIQCEPP------ 424
Query: 402 ADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYFG 444
+ Y+H VA++ +KS +S I+K G
Sbjct: 425 REVEAYIHRSGRTGRAGNTGVAVTLYDSRKS--SVSRIEKEAG 465
>SPCC1494.06c [A] KOG0346 RNA helicase
Length = 595
Score = 94.4 bits (233), Expect = 3e-19
Identities = 74/291 (25%), Positives = 141/291 (48%), Gaps = 18/291 (6%)
Query: 98 KFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLT------RVDPNVNSTQ 151
+F+KP+ +Q + +PL + +++AQ+++G+GKTAA+ + +L ++D N
Sbjct: 33 EFEKPTSVQSETIPLALEGK--DLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIF 90
Query: 152 AICLSPARELARQTLEVIQEMGKFTKTSSQLV---VPDSFERNKPITAN---IVVGTPGT 205
A+ L P RELA+Q V++++ F + + S +P+ + IV+ TP
Sbjct: 91 ALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQRPLLLDLPDIVIATPSR 150
Query: 206 VLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGV 265
+ + +L L +K V+DEAD ML G + + + LP+ Q L SAT +
Sbjct: 151 CVVHVASGVLPLDKLKFLVIDEADLML-SFGYNEDMKTLSRSLPRGTQSFLMSATLSKNI 209
Query: 266 RQYAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTI-GSSIIFV 324
K + L ++ E + + Q + C +E+ K+ + L L I G +IFV
Sbjct: 210 ASLQKLVCRNPFILAVKDKEAS-GKLTQYVVKC-SEQDKFLLAYILLKLRLIKGKILIFV 267
Query: 325 KTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTN 375
L L++ G + +L+ +L R +++ + +G +++I T+
Sbjct: 268 NEINRCYRLKLFLEQFGLKSLVLNSELPVNSRLHILEQYNKGLYQIIIATD 318
>CE26264 [A] KOG0335 ATP-dependent RNA helicase
Length = 328
Score = 94.0 bits (232), Expect = 4e-19
Identities = 66/222 (29%), Positives = 114/222 (50%), Gaps = 12/222 (5%)
Query: 214 MLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKF--LPKTCQLV--LFSATFDDGVRQYA 269
++ + + VLDEAD MLD G Q ++ + +P + + +FSATF ++ A
Sbjct: 5 LIGMEGCRYLVLDEADRMLD-MGFEPQIRQIVECNRMPSKEERITAMFSATFPKEIQLLA 63
Query: 270 KKIIP-TAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQ 328
+ + V L + + I Q + + +E + ++ L +++FV+TK+
Sbjct: 64 QDFLKENYVFLAVGRVGSTSENIMQKIVWVEEDEKRSYLMDLLDATGDSSLTLVFVETKR 123
Query: 329 TANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSM 388
A+ L L ++ ++V +HGDL+ +R++ +D FR G + +L+ T V ARG+DIP+V
Sbjct: 124 GASDLAYYLNRQNYEVVTIHGDLKQFEREKHLDLFRTGTAPILVATAVAARGLDIPNVKH 183
Query: 389 VVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDK 430
V+NYDLP +D YVH +A SF +DK
Sbjct: 184 VINYDLP------SDVDEYVHRIGRTGRVGNVGLATSFFNDK 219
>CE03821 [A] KOG0345 ATP-dependent RNA helicase
Length = 578
Score = 94.0 bits (232), Expect = 4e-19
Identities = 94/371 (25%), Positives = 166/371 (44%), Gaps = 36/371 (9%)
Query: 120 NMIAQSQSGTGKTAAFSLTMLTRVDP---NVNSTQAICLSPARELARQTLEVIQEMGKFT 176
+++ +S +G+GKT AF L M+ + A+ LSP+REL Q + VIQ +
Sbjct: 48 DVVVESPTGSGKTLAFVLPMMRMIQNAKLQPADIGALILSPSRELCSQIVSVIQPFAEKL 107
Query: 177 KTSSQLV-----VPDSFERNKPITANIVVGTPGTVLDLIRRKML----NLGSIKVFVLDE 227
+ + V V + + K NI+V TPG + +I+ + + ++++ V+DE
Sbjct: 108 NLTVETVTGGQKVDKNIKMFKNKNVNILVATPGRLFQIIQHEKTLIARKMRTLQLLVIDE 167
Query: 228 ADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATF----DD----GVRQYAKKIIPTAVSL 279
AD + Q D + +PK + LFSAT DD G+R AK+ V +
Sbjct: 168 ADRFNEIQ-FEDHMREILSCIPKQRRTGLFSATQVKEEDDLMVFGLRN-AKQ-----VKV 220
Query: 280 ELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQTANLLYAKLKK 339
++N S +K +++C +E K ++ E T +IF + + Y ++
Sbjct: 221 AQERNSAAPSTLKNYYVECRADE-KTSVCLEFIRQRTDKKILIFFPSCNSVRYFYKIFER 279
Query: 340 --EGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVNYDLPTL 397
+ +HG + R I F + + V+I+T+V+ARGIDI + V+ +DLP
Sbjct: 280 CLGKRPLFAVHGKCSNPHRASQIKAFSDSTNGVMISTDVMARGIDISDIDWVIQFDLP-- 337
Query: 398 PNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYFGDIEITKVPTDDLD 457
S +VH A+ I ++ V ++ KVPT++
Sbjct: 338 ----KHSSWFVHRAGRTARCGREGNALILIASEQLAYVNFLDNHEKVKLDEIKVPTNNSR 393
Query: 458 EMETIVKKALK 468
+ E + +K +K
Sbjct: 394 KSEELRQKMIK 404
>At4g34910 [A] KOG0346 RNA helicase
Length = 626
Score = 93.6 bits (231), Expect = 6e-19
Identities = 92/383 (24%), Positives = 157/383 (40%), Gaps = 64/383 (16%)
Query: 100 QKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTR------VDPNVNSTQAI 153
+KP+ IQ+ A+P ++ +++A++++G+GKT A+ L +L + V + A
Sbjct: 67 EKPTLIQQSAIPYILEGK--DVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAF 124
Query: 154 CLSPARELARQTLEVIQEMGKFTKTSSQLV-VPDSFERNKPITA-----NIVVGTPGTVL 207
L P+REL +Q + + + + + V + S + A I+V TP +
Sbjct: 125 ILVPSRELCQQVYTEVSSLIELCRVQLKAVQLTSSMSASDMRNALAGLPEILVSTPACIP 184
Query: 208 DLIRRKMLN----LGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDD 263
+L S+ + VLDEAD +L G D V +P+ CQ +L SAT
Sbjct: 185 KCFAAGVLEPTAVSESLSILVLDEADLLLS-YGYEDNLRSVTSIIPRRCQCLLMSATTSS 243
Query: 264 GVRQYAKKIIPTAVSLEL----QKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGS 319
V + K I+ + L L K E S ++Q ++ C ++ IL+ L +
Sbjct: 244 DVEKLKKLILHNPIVLTLTEDNDKEEAVPSNVQQFWISCSAQDKLLHILALLKLEVVQKK 303
Query: 320 SIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTN---- 375
+IF+ T L L+K G + +IL+G+L R +++ F G LI T+
Sbjct: 304 ILIFINTIDMGFRLKLFLEKFGIKSAILNGELPQNSRLHILEQFNAGLFDYLIATDDNSQ 363
Query: 376 -------------------------------VLARGIDIPSVSMVVNYDLPTLPNGQADP 404
+ RGID V V+N+D+P G
Sbjct: 364 TKKQKEEAKGEANKENKKNNKRSKPKLDAEFGVVRGIDFKKVHTVINFDMPQSVTG---- 419
Query: 405 STYVHXXXXXXXXXXXXVAISFI 427
Y+H ++S I
Sbjct: 420 --YIHRIGRTGRAYSSGSSVSLI 440
>Hs4826686 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 740
Score = 93.2 bits (230), Expect = 7e-19
Identities = 99/346 (28%), Positives = 152/346 (43%), Gaps = 69/346 (19%)
Query: 148 NSTQAICLSPARELARQTLEVIQEMGKFT---KTSSQLVVPDSFERNKPIT----ANIVV 200
N+ +A+ + P+RELA QTL I++ K+ K L++ R++ +IVV
Sbjct: 285 NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV 344
Query: 201 GTPGTVLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLP------KTCQL 254
GTPG + DL+ LNL ++ VLDEAD +L QG D R+ +P K Q+
Sbjct: 345 GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLL-SQGYSDFINRMHNQIPQVTSDGKRLQV 403
Query: 255 VLFSATFDD-GVRQYAKKII--PTAVSLE--------------------------LQKNE 285
++ SAT V++ ++KI+ PT V L+ L K+
Sbjct: 404 IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH 463
Query: 286 VNVSAI--KQLFMDCDNEEHKYT----ILSELYGLLTI-----GSSIIFVKTKQTANLLY 334
+ + K N ++ IL Y + I +IIF +TK + L
Sbjct: 464 IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE 523
Query: 335 AKL-------KKEGHQVS--ILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPS 385
K+GHQ S LHGD + +R + ++ F++G + LI T+V ARGIDI
Sbjct: 524 QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG 583
Query: 386 VSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKK 431
V V+N LP + YVH +AIS + +K
Sbjct: 584 VPYVINVTLPD------EKQNYVHRIGRVGRAERMGLAISLVATEK 623
>SPBC691.04 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 535
Score = 92.8 bits (229), Expect = 1e-18
Identities = 91/332 (27%), Positives = 158/332 (47%), Gaps = 31/332 (9%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRV---DPNVNSTQ--AI 153
F+K + +Q++ L + + N + Q+++GTGKT AF L V P +NS++ ++
Sbjct: 58 FEKMTPVQQRVLNEVFPNE-ENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSV 116
Query: 154 CLSPARELARQTLEVIQEM--GKFTKTSSQLVVPDSFERNKPI---TANIVVGTPGTVLD 208
LSP RELA Q E +++ G + S + I AN+++ TPG + D
Sbjct: 117 ILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRLED 176
Query: 209 LIRR-KMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKT-CQLVLFSATFDDGVR 266
++ ++L S F+LDEAD ++D G + + + + + T + + FSAT V
Sbjct: 177 HLQNPRILESLSTDSFILDEADRLMD-MGFAESILNIHEAVTTTKTRKLCFSATMPPKVS 235
Query: 267 QYAKKIIPTAVSLE--LQKNEVNV-SAIKQLFMDCDNEEHKYTILSELYGLLTIGSS--- 320
+ I+ T L L NE + Q ++ ++ + LS L L + S
Sbjct: 236 NVFRGILGTDFKLINCLDPNEPPTHERVPQFVIETKLDKVFSSSLSLLQQLTSSNPSSRI 295
Query: 321 IIFVKTKQTANLLYAKLKKEGH---QVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVL 377
I+F+ T + + L E H ILH L + R + + FR+ +S +L T+V+
Sbjct: 296 IVFLPTISMVDFVGGVL--ENHLKIPCFILHSGLTTAQRRSITESFRKCQSGILFATDVV 353
Query: 378 ARGIDIPSVSMVVNYDLPTLPNGQADPSTYVH 409
ARG+D P+++ VV G ++ Y+H
Sbjct: 354 ARGMDFPNITQVVQI------TGPSNTDDYIH 379
>At1g63250 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 798
Score = 92.4 bits (228), Expect = 1e-18
Identities = 100/426 (23%), Positives = 182/426 (42%), Gaps = 48/426 (11%)
Query: 63 NLADLQADANSPLYSVXXXXXXXXXXXXXXXXYAMKFQKPSKIQEKALPLLIRDPPHNMI 122
N+ + + + + +YS A K +++Q+ L + + +
Sbjct: 312 NVMEEKQEPHDSIYSAKRFDESCISPLTLKALSASGILKMTRVQDATLSECLDGK--DAL 369
Query: 123 AQSQSGTGKTAAFSLTMLTRVDPNVNSTQ---------AICLSPARELARQTLEVIQEMG 173
++++GTGK+ AF L + V +NS + A+ L P RELA Q + +
Sbjct: 370 VKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQIAAEGKALL 429
Query: 174 KFTKTSS--QLVVPDSF----ERNKPITANIVVGTPGTVLDLIRRKM---LNLGSIKVFV 224
KF L+ F +R + I++ TPG +LD I K L ++K+F+
Sbjct: 430 KFHDGIGVQTLIGGTRFKLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFI 489
Query: 225 LDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAKKIIPTAVS----LE 280
+DEAD +LD G ++ LP+ Q +LFSAT VR+ ++ ++ S +
Sbjct: 490 VDEADLLLDL-GFRRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQLVLKRDHSYIDTIG 548
Query: 281 LQKNEVNVSAIKQLFMDCDNEEHKYTI---LSELYGLLTIGSSIIFVKTKQTANLLYAKL 337
L E + ++Q + +E H + + L E I+F T +L+Y L
Sbjct: 549 LGCVETH-DKVRQSCIVAPHESHFHLVPHLLKEHINNTPDYKIIVFCSTGMVTSLMYTLL 607
Query: 338 KKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVNYDLPTL 397
++ V +H R R+ D+F+E +L+T++V ARG++ P V++V+ +P
Sbjct: 608 REMKLNVREIHARKPQLHRTRVSDEFKESNRLILVTSDVSARGMNYPDVTLVIQVGIP-- 665
Query: 398 PNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYF----GDIEITKVPT 453
+D Y+H + I + ++YF D+ + +P
Sbjct: 666 ----SDREQYIHRLGRTGREGKGGEGLLLI---------APWERYFLDELKDLPLEPIPA 712
Query: 454 DDLDEM 459
DLD +
Sbjct: 713 PDLDSI 718
>SPBC4F6.07c [A] KOG0347 RNA helicase
Length = 648
Score = 91.7 bits (226), Expect = 2e-18
Identities = 92/332 (27%), Positives = 151/332 (44%), Gaps = 41/332 (12%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNS--TQAICLS 156
F KP IQ +P ++I ++ +G+GKT AF + +L NV++ QA+ ++
Sbjct: 142 FSKPMPIQSLVIPEA--SIGFDIIGKADTGSGKTLAFGIPILEHCLRNVDAKYVQALVVA 199
Query: 157 PARELARQTLEVIQ------EMGKFTKTSSQLVVPDSFERNKPITANIVVGTPGTVLDLI 210
P RELA Q + + + + T V NK ++VV TPG + +I
Sbjct: 200 PTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKH--PHVVVATPGRLWSVI 257
Query: 211 RRKML--NLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTC----QLVLFSATFDDG 264
L N IK VLDEAD +L K ++ ++ + L Q +FSATFD+G
Sbjct: 258 NENNLTGNFKKIKCLVLDEADRLLQKSHF-EELSKLLEILGNPMHTQRQTFIFSATFDEG 316
Query: 265 VRQYAKKIIPTAVS------LELQKNEVNVSAIKQLFMDCDNEEHKYTILSE-------- 310
++Q KK + ++ +E EV K F+D + + + + E
Sbjct: 317 LQQRLKKNMKGNITEKYNSPMENMLKEVRFFG-KPKFLDANPQSAVASRVLEGLIECAPA 375
Query: 311 -----LYGLLT--IGSSIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDF 363
LY L+ G +++F + + L + LH L + R + ++ F
Sbjct: 376 EKDLYLYYLIMRYPGKTMVFANGIEDIKRITPFLNELKVPSYPLHAQLDQKKRLQSLEKF 435
Query: 364 REGRSKVLITTNVLARGIDIPSVSMVVNYDLP 395
+ VL+ T+V ARGIDIPSV+ V++Y +P
Sbjct: 436 KNNPKGVLVCTDVAARGIDIPSVTHVIHYHVP 467
>7296530 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 727
Score = 90.5 bits (223), Expect = 5e-18
Identities = 97/338 (28%), Positives = 151/338 (43%), Gaps = 62/338 (18%)
Query: 145 PNVNSTQAICLSPARELARQTLEVIQEMGKFTKT----SSQLVVPDSFERNKPIT---AN 197
P N+ QAI + P+RELA QT I++ S L+ E K +
Sbjct: 282 PAPNAPQAIIMEPSRELAEQTYNQIEKFKYHLSNPEVRSLLLIGGVRLEEQKAQLMQGTH 341
Query: 198 IVVGTPGTVLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTC----- 252
IVVGTPG + ++I ++ L + FVLDEAD +L KQG + R+ K +PK
Sbjct: 342 IVVGTPGRLEEMINSGLVLLTHCRFFVLDEADALL-KQGYTELIDRLHKQIPKITSDGRR 400
Query: 253 -QLVLFSATFDD-GVRQYAKKII--PTAVSLELQ----------------KNEVNVSAIK 292
Q+V+ SAT V++ A++++ PT V L+ + + + +++
Sbjct: 401 LQMVVCSATLHAFEVKKMAERLMHFPTWVDLKGEDAVPETVHHVVCLVDPQMDTTWQSLR 460
Query: 293 QLF-----MDCDNEE---HKYTILSELYGLL------------TIGSSIIFVKTKQTANL 332
Q D DN H LS+ LL + +IIF +TKQ +
Sbjct: 461 QPIGTDGVHDRDNVHPGNHSKETLSQAVKLLKGEYCVHAIDKHNMDRAIIFCRTKQDCDN 520
Query: 333 LYAKLKKEG---HQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMV 389
L L++ G + LHGD + Q+R ++ F+ + K LI T+V ARG+DI + +
Sbjct: 521 LERFLRQRGGKHYSCVCLHGDRKPQERKENLEMFKRQQVKFLICTDVAARGLDITGLPFM 580
Query: 390 VNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFI 427
+N LP D + YVH +AIS +
Sbjct: 581 INVTLPD------DKTNYVHRIGRVGRAERMGLAISLV 612
>CE11190 [A] KOG0347 RNA helicase
Length = 746
Score = 89.7 bits (221), Expect = 8e-18
Identities = 86/350 (24%), Positives = 160/350 (45%), Gaps = 55/350 (15%)
Query: 97 MKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRV-----------DP 145
M F +P++IQ LP +RD +++ +++G+GKT AF + ++ R+
Sbjct: 173 MGFSEPTEIQSAVLPAAVRD-RQDVLGAAETGSGKTLAFGIPLVARLLESSDDSQETEST 231
Query: 146 NVNSTQAICLSPARELARQTLEVIQEMGKFTKTSSQLVVPD--SFERNKPIT---ANIVV 200
V +A+ ++P REL Q ++ I + T+ + +V ++ + I+ +IVV
Sbjct: 232 EVRGPRALIVAPTRELVIQIMKHINALISTTQLIATSIVGGLAQVKQERIISQQRPDIVV 291
Query: 201 GTPGTVLDLIRRK-----MLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKT---- 251
TPG + +++ + +K V+DE D M+++ + + K ++
Sbjct: 292 ATPGRLWAMMQEAETGEFLAEWKDLKCLVVDETDRMVEEGYFAELTHILNKIHEESEKEK 351
Query: 252 CQLVLFSATF-----DDGVRQYAKKIIPTAVSLELQ-----------KNEV--------N 287
Q ++FSAT D + KK + ++Q K++V
Sbjct: 352 LQTLVFSATLTFAKAQDVAEEEKKKAKELSSQQKIQRLIKLTGLRENKHKVIDLTRQMGT 411
Query: 288 VSAIKQLFMDCDNEEHKYTILSELYGLLT--IGSSIIFVKTKQTANLLYAKLKKEGHQVS 345
+ + ++C N K T L LLT G +I+FV + A LY+ LK
Sbjct: 412 AGCLVEARINCGNLLEKDT---SLVYLLTRYPGRTIVFVNSIDAARRLYSVLKSVNIDPM 468
Query: 346 ILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVNYDLP 395
ILH + + R + ++ F E ++ VL+ T+V ARG+DI + V++Y +P
Sbjct: 469 ILHAKMIQKQRLKNLEKFSESKNAVLLATDVAARGLDIQGIDHVIHYQVP 518
>At2g07750 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 845
Score = 89.7 bits (221), Expect = 8e-18
Identities = 99/425 (23%), Positives = 180/425 (42%), Gaps = 50/425 (11%)
Query: 63 NLADLQADANSPLYSVXXXXXXXXXXXXXXXXYAMKFQKPSKIQEKALPLLIRDPPHNMI 122
N+ + + + + +YS A K +++Q+ L + + +
Sbjct: 359 NVMEEKQEPHDSIYSAKRFDESCISPLTLKALSASGIVKMTRVQDATLSECLDGK--DAL 416
Query: 123 AQSQSGTGKTAAFSLTMLTRVDPNVNSTQAI---------CLSPARELARQT-------L 166
++++GTGK+ AF L + V +NS + + L P RELA Q L
Sbjct: 417 VKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQIAAEGKALL 476
Query: 167 EVIQEMGKFTKTSSQLVVPDSFERNKPITANIVVGTPGTVLDLIRRKM---LNLGSIKVF 223
+ +G T D +R + I++ TPG +LD I K L ++K+F
Sbjct: 477 KNHDGIGVQTLIGGTRFRLDQ-QRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLF 535
Query: 224 VLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAKKIIPTAVS----L 279
++DEAD +LD G ++ LP+ Q +LFSAT VR+ ++ ++ S +
Sbjct: 536 IVDEADLLLDL-GFKRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQLVLKRDHSYIDTI 594
Query: 280 ELQKNEVNVSAIKQLFMDCDNEEHKYTI---LSELYGLLTIGSSIIFVKTKQTANLLYAK 336
L E + +KQ + +E H + + L E + I+F T +L+Y
Sbjct: 595 GLGCVETH-DKVKQSCIVAPHESHFHLVPHLLKEHINNMPDYKIIVFCSTGMVTSLMYTL 653
Query: 337 LKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVNYDLPT 396
L++ V +H R + D+F+E +L+T++V ARG++ P V++V+ +P
Sbjct: 654 LREMKLNVREIHARKPQLHRTCVSDEFKESNRLILVTSDVSARGMNYPDVTLVIQVGIP- 712
Query: 397 LPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQKYF----GDIEITKVP 452
+D Y+H K +++ ++YF D+ + +P
Sbjct: 713 -----SDREQYIHRLGRTGREGKGG---------KGLLLIAPWERYFLDELKDLPLEPIP 758
Query: 453 TDDLD 457
DLD
Sbjct: 759 APDLD 763
>Hs9966805 [A] KOG0347 RNA helicase
Length = 859
Score = 89.4 bits (220), Expect = 1e-17
Identities = 97/402 (24%), Positives = 171/402 (42%), Gaps = 50/402 (12%)
Query: 103 SKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICLSPARELA 162
S I+EK +P + N+ + Q+G K + + P + L+P RELA
Sbjct: 343 SLIREKPVPKQNENEEENL-DKEQTGNLKQELDDKSATCKAYPK-RPLLGLVLTPTRELA 400
Query: 163 RQTLEVIQEMGKFTKTSSQLVVPDSFERNKPITAN----IVVGTPGTVLDLIRRK---ML 215
Q + I + +FT + ++V + + N IVV TPG + +LI+ K +
Sbjct: 401 VQVKQHIDAVARFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLR 460
Query: 216 NLGSIKVFVLDEADNMLDKQGLGD-----QCIRVKKFLPKTCQLVLFSATFD-------- 262
NL ++ V+DEAD M++K + + + ++ PK Q ++FSAT
Sbjct: 461 NLRQLRCLVVDEADRMVEKGHFAELSQLLEMLNDSQYNPKR-QTLVFSATLTLVHQAPAR 519
Query: 263 DGVRQYAKKIIPTA---------------VSLELQKNEVNVSAIKQLFMDCDNEEHKYTI 307
+++ KK+ TA ++L +NE V + + + C+ +E + +
Sbjct: 520 ILHKKHTKKMDKTAKLDLLMQKIGMRGKPKVIDLTRNEATVETLTETKIHCETDEKDFYL 579
Query: 308 LSELYGLLTI-GSSIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREG 366
Y L+ G S++F + L LK LH + + R R ++ F
Sbjct: 580 ---YYFLMQYPGRSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFARL 636
Query: 367 RSKVLITTNVLARGIDIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISF 426
VL+ T+V ARG+DIP V V++Y +P YVH +++
Sbjct: 637 EDCVLLATDVAARGLDIPKVQHVIHYQVP------RTSEIYVHRSGRTARATNEGLSLML 690
Query: 427 I--HDKKSFEVLSAIQKYFGDIEITKVPTDDLDEMETIVKKA 466
I D +F+ + K DI + V T +D ++ ++ A
Sbjct: 691 IGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDVVKERIRLA 732
>At1g71280 [A] KOG0345 ATP-dependent RNA helicase
Length = 465
Score = 88.2 bits (217), Expect = 2e-17
Identities = 78/303 (25%), Positives = 138/303 (44%), Gaps = 43/303 (14%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRV------DPNVNSTQA 152
F+ + +Q + +P L +++ + +G+GKT AF L + + P +
Sbjct: 37 FEVCTPVQAETIPFLCSHK--DVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMG 94
Query: 153 ICLSPARELARQTLEVIQEMG-KFTKTSSQLVVPDSFERNKPITANIVVGTPGTVLDLIR 211
+ +SP REL+ Q +V + + F K ++ E AN+++GTPG + D+++
Sbjct: 95 VIISPTRELSAQIHKVARAVRLDFAKCREVEADMNTLEEEG---ANLLIGTPGRLSDMMK 151
Query: 212 R-KMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAK 270
R + L+ ++++ +LDEAD +LD G Q + LPK + LFSAT V AK
Sbjct: 152 RMEFLDFRNLEILILDEADRLLD-MGFQKQVNYIISRLPKQRRTGLFSATQTQAVADLAK 210
Query: 271 KIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSS---IIFVKTK 327
+ ++ ++ C+ ++ S+L LL + ++F T
Sbjct: 211 ------------------AGLRNPYLKCEADQKS----SQLVHLLIENKNKKLVVFFMTC 248
Query: 328 QTANLLYAKLKKEGHQVSI----LHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDI 383
+ + K SI HG + + RD + F E S VL+ T+V ARG+DI
Sbjct: 249 ACVDYWGLVISKIPSLKSISFFPTHGKMDQKGRDTALASFTEASSGVLLCTDVAARGLDI 308
Query: 384 PSV 386
P +
Sbjct: 309 PGI 311
>CE27336 [A] KOG0334 RNA helicase
Length = 436
Score = 87.8 bits (216), Expect = 3e-17
Identities = 82/257 (31%), Positives = 117/257 (44%), Gaps = 59/257 (22%)
Query: 152 AICLSPARELARQTLEVIQEMGKFTK--------TSSQLVVPDSFERNKPITANIVVGTP 203
A+ L+P RELA QT + E KF K T + + + K A IVV TP
Sbjct: 119 AVILTPTRELAMQTYK---EANKFAKPLGLKVACTYGGVGISEQIADLKR-GAEIVVCTP 174
Query: 204 GTVLDLIRR---KMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSAT 260
G ++D++ K+ NL + VLDEAD M K F P
Sbjct: 175 GRMIDVLAANSGKVTNLRRVTYLVLDEADRMFHKG-----------FEP----------- 212
Query: 261 FDDGVRQYAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLL-TIGS 319
++ V S I Q + C E K+ L EL G+ GS
Sbjct: 213 -------------------QVGGKSVVCSDITQNAVICA-EHQKFLKLLELLGMYYDEGS 252
Query: 320 SIIFVKTKQTANLLYAKLKKEGHQ-VSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLA 378
SI+FV ++ A+ + +L + G+ V+ LHG + DRD I DF+ G KVL+ T+V A
Sbjct: 253 SIVFVDKQEKADDIVDQLMRTGYNSVASLHGGIDQHDRDSSIADFKTGVIKVLVATSVAA 312
Query: 379 RGIDIPSVSMVVNYDLP 395
RG+D+ ++ +VVNYD P
Sbjct: 313 RGLDVKNLILVVNYDCP 329
>At3g16840 [A] KOG0347 RNA helicase
Length = 833
Score = 87.8 bits (216), Expect = 3e-17
Identities = 106/453 (23%), Positives = 181/453 (39%), Gaps = 98/453 (21%)
Query: 95 YAMKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNST---- 150
Y + F++P+KIQ KA + ++I +++G+GKT AF L +L R+
Sbjct: 207 YRLDFKEPTKIQ-KACFNVAAYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLY 265
Query: 151 ----------------QAICLSPARELARQTLEVIQEMGKFTKTSSQLVVPDSF----ER 190
+A+ ++P RELA Q E ++ K +V F ER
Sbjct: 266 ALKGEEAQKYAADGYLRALIITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQER 325
Query: 191 NKPITANIVVGTPGTVLDLI---RRKMLNLGSIKVFVLDEADNML--------------- 232
IVV TPG + +L+ + ++ L S+ FVLDEAD M+
Sbjct: 326 RLKEKPEIVVATPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVERGHFRELQSILDLL 385
Query: 233 ---DKQGLG--------DQCIRVKKFLPKTCQLVLFSATF--DDGVRQYAKK-------- 271
DK G D + V K K Q +FSAT R+ K+
Sbjct: 386 PVTDKPNEGKTQTVKSNDTVLNVPK---KKRQTFVFSATIALSSDFRKKLKRGSSKSKQS 442
Query: 272 ----------------IIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLL 315
+ ++L + I++ F+ C+ +E + LY +L
Sbjct: 443 SSGEVNSIEVLSERAGMRDNVAIIDLTTTSILAPKIEESFIKCEEKEKD----AYLYYIL 498
Query: 316 TI---GSSIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLI 372
++ G +I+F + + LK G V L +++ + R + ID FR + +LI
Sbjct: 499 SVHGQGRTIVFCTSVTDLRHISGLLKILGLDVCTLFSEMKQRARLKSIDRFRASENGILI 558
Query: 373 TTNVLARGIDIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKS 432
T+++ARGIDI +V +++Y LP YVH +I+ I ++
Sbjct: 559 ATDLVARGIDIKNVRTIIHYKLP------HSAEVYVHRCGRTARAFADGCSIALIEPNET 612
Query: 433 FEVLSAIQKYFGDIEITKVPTDDLDEMETIVKK 465
+ + + + +E K+ D M + K+
Sbjct: 613 SKFYTLCKSF--SMESVKIFPLDNSYMPAVRKR 643
>7296165 [A] KOG0330 ATP-dependent RNA helicase
Length = 536
Score = 87.8 bits (216), Expect = 3e-17
Identities = 79/317 (24%), Positives = 145/317 (44%), Gaps = 33/317 (10%)
Query: 105 IQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRV-------DPNVNSTQAICLSP 157
IQ++ +P+ + H +IA +++G GKT + L ++ ++ + +N+ + + L+P
Sbjct: 135 IQKQGMPV-VHGNEHCLIA-AETGCGKTITYLLPIVDKLLQKEVVTERKLNTPRVLILTP 192
Query: 158 ARELARQTLEVIQEMGKFTK---------TSSQLVVPDSFERNKPITANIVVGTPGTVLD 208
RELA Q V +++ + T + QL++ FE +I+V T G +
Sbjct: 193 GRELATQIAGVTEKLTQGTNLKVQSLLGGNTKQLMMNPQFEE-----VDILVATLGALSK 247
Query: 209 LIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFL-------PKTCQLVLFSATF 261
L+ + + ++ VLDEAD +LD +++F Q++L SAT
Sbjct: 248 LVTTGIYRMEQVRHLVLDEADTLLDDTFTDKLSYFLRRFPFHLVQKEDAGTQMILASATM 307
Query: 262 DDGVRQYAKKIIPTAVSLELQKNEVN--VSAIKQLFMDCDNEEHKYTILSEL-YGLLTIG 318
R+ K+I E+ ++ +S + Q F+ + T+LS + + L
Sbjct: 308 PTNTREILHKVIDVDTIREVVSPHLHRLMSHVTQKFLRLSKADRPATLLSLVKHDLAKRR 367
Query: 319 SSIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLA 378
I+F T++ + L G L+GD+ + R + F+ G VL TT+V +
Sbjct: 368 PLIVFSNKSTTSDFVSIFLNNSGVNCLNLNGDMLMKIRLGRFEQFQNGHCDVLSTTDVGS 427
Query: 379 RGIDIPSVSMVVNYDLP 395
RG+D VVN+D P
Sbjct: 428 RGLDTTRARHVVNFDFP 444
>Hs21040373 [A] KOG0329 ATP-dependent RNA helicase
Length = 316
Score = 87.4 bits (215), Expect = 4e-17
Identities = 55/181 (30%), Positives = 92/181 (50%), Gaps = 8/181 (4%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICLSPA 158
F+ PS++Q + +P I +++ Q++SG GKTA F L L +++P + +
Sbjct: 64 FEHPSEVQHECIPQAILGM--DVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHT 121
Query: 159 RELARQTLEVIQEMGKF---TKTS---SQLVVPDSFERNKPITANIVVGTPGTVLDLIRR 212
RELA Q + + K+ K S L + E K ++VVGTPG +L L+R
Sbjct: 122 RELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVRN 181
Query: 213 KMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAKKI 272
+ +L ++K FVLDE D ML++ + + + P Q ++FSAT +R +K
Sbjct: 182 RSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKDIRPVCRKF 241
Query: 273 I 273
+
Sbjct: 242 M 242
>YDR194c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 664
Score = 87.0 bits (214), Expect = 5e-17
Identities = 93/373 (24%), Positives = 165/373 (43%), Gaps = 58/373 (15%)
Query: 97 MKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTML-----TRVDPNVNSTQ 151
M+F + +Q+K + ++ H++IA++++GTGKT AF + + T+ D +
Sbjct: 124 MEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQY-MVK 182
Query: 152 AICLSPARELARQ---TLEVIQEMGKFTKTSS--QLVVPDSF----ERNKPITANIVVGT 202
A+ ++P R+LA Q ++ I +M K + LV F + + NIV+ T
Sbjct: 183 AVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIAT 242
Query: 203 PGTVLDLIRR---KMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPK-------TC 252
PG ++D++ + K K VLDEAD +L+ G D + L +
Sbjct: 243 PGRLIDVLEKYSNKFFRFVDYK--VLDEADRLLE-IGFRDDLETISGILNEKNSKSADNI 299
Query: 253 QLVLFSATFDDGVRQYAKKIIPTAVSLEL---QKNE------------VNVSAIKQLFMD 297
+ +LFSAT DD V++ A I+ L L KNE ++ +F
Sbjct: 300 KTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAA 359
Query: 298 CDNEEHKYTILSELYGLLTIGSSIIFVKTKQTANLLYAKLKKEGHQ---VSILHGDLQSQ 354
++ + + Y +IIF T + + L + LK E + + HG +
Sbjct: 360 VEHIKKQIKERDSNY------KAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQN 413
Query: 355 DRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXX 414
R L+ F++ S +L+ T+V ARG+D P+V V+ +P ++ + Y+H
Sbjct: 414 KRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVP------SELANYIHRIGRT 467
Query: 415 XXXXXXXVAISFI 427
++ FI
Sbjct: 468 ARSGKEGSSVLFI 480
>Hs17474878 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 645
Score = 86.7 bits (213), Expect = 7e-17
Identities = 70/248 (28%), Positives = 121/248 (48%), Gaps = 30/248 (12%)
Query: 198 IVVGTPGTVLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLF 257
IV+ TPG ++D++ + L L VLDEAD M+D G ++ + +P++
Sbjct: 385 IVIATPGHLIDVLENRYLVLSCCTYVVLDEADRMIDV-GFEPDVQKILEHMPQS------ 437
Query: 258 SATFDDGVRQYAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTI 317
A D+ + +K++ S + + +E ++Q+F+ ++E+ K +L +L
Sbjct: 438 EARHDES--EDPEKMLANFESGKRKPHE----RVEQVFLMSESEKRK-----KLLEILKQ 486
Query: 318 G---SSIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITT 374
G + IFV K+ ++L L+K G+ LHG + R+ + + + G VL+TT
Sbjct: 487 GFDPAITIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKPGAKDVLVTT 546
Query: 375 NVLARGIDIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKS-- 432
+V GIDI VSMVVNYD+ + Y+H VAI+F+ + S
Sbjct: 547 DVAGHGIDIQDVSMVVNYDM------AKNIDDYIHRIGRMGQAGKSGVAITFLTKEDSAV 600
Query: 433 -FEVLSAI 439
+E+ AI
Sbjct: 601 FYELKQAI 608
>Hs17505907 [A] KOG0348 ATP-dependent RNA helicase
Length = 851
Score = 85.5 bits (210), Expect = 2e-16
Identities = 86/375 (22%), Positives = 169/375 (44%), Gaps = 71/375 (18%)
Query: 97 MKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQ----- 151
+K + +Q++++P+L+ + + +SQ+G+GKT A+ + ++ + + Q
Sbjct: 249 LKMSSMTSVQKQSIPVLLEG--RDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGP 306
Query: 152 -AICLSPARELARQTLEVIQEMGK-FTKTSSQLVVPDSFERNKPITA----NIVVGTPGT 205
A+ L P RELA Q+ + +Q++ K FT +++ +++ NI++ TPG
Sbjct: 307 YALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGR 366
Query: 206 VLDLIRR-KMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQL---VLFSATF 261
++D I+ K ++ ++ V DEAD +LD G + + CQ VL SAT
Sbjct: 367 LVDHIKSTKNIHFSRLRWLVFDEADRILDL-GFEKDITVILNAVNAECQKRQNVLLSATL 425
Query: 262 DDGVRQYAKKIIPTAVS---LELQKNEVNVS--AIKQL-----------FMDCDNEEHKY 305
+GV + A + VS L+ +++N A++++ F ++ +
Sbjct: 426 TEGVTRLADISLHDPVSISVLDKSHDQLNPKDKAVQEVCPPPAGDKLDSFAIPESLKQHV 485
Query: 306 TILSELYGLLTIGSSI-------------IFVKTKQTANLLYAK-----LKKEGHQVS-- 345
T++ L+ + + I +F + + Y+ L G S
Sbjct: 486 TVVPSKLRLVCLAAFILQKCKFEEDQKMVVFFSSCELVEFHYSLFLQTLLSSSGAPASGQ 545
Query: 346 -----------ILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVNYDL 394
LHG ++ ++R + +F R VL+ T+V ARG+D+P V+ +V Y+
Sbjct: 546 LPSASMRLKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCTDVAARGLDLPQVTWIVQYNA 605
Query: 395 PTLPNGQADPSTYVH 409
P + P+ Y+H
Sbjct: 606 P------SSPAEYIH 614
>At5g19210 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 430
Score = 84.0 bits (206), Expect = 5e-16
Identities = 82/326 (25%), Positives = 148/326 (45%), Gaps = 45/326 (13%)
Query: 103 SKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICLSPARELA 162
+ + E +PL +R Q G+GKT + L + + ++P +S QA+ + P REL
Sbjct: 64 NSVTETTVPLTLR--------QICQGSGKTLTYLLLIFSLINPQRSSVQAVIVVPTRELG 115
Query: 163 RQTLEVIQEMGKFTK------TSSQLVVPDSFERNKP-ITAN---IVVGTPGTVLDLIRR 212
Q +V + + ++ T L+ + R+K + A I+V T ++ ++ +
Sbjct: 116 MQVTKVARMLAAKSEIDVKGCTVMALLDGGTLRRHKSWLKAEPPAILVATVASLCHMLEK 175
Query: 213 KMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAKKI 272
+ + S++V V+DE D + Q V+K L F K
Sbjct: 176 HIFRIDSVRVLVVDEVDFLFYSS---KQVGSVRKLLTSFSSCDKRQTVFASASIPQHKHF 232
Query: 273 IPTAVSLELQKNEV---NVSAIKQL-------FMDCDNEEHKYTILSELYGLLTIGSSII 322
+ + + K +V +VSAI + F+ C+ + +K+ +L L S+II
Sbjct: 233 VHDCIQQKWTKRDVVHVHVSAIMPMPLCLLHRFVMCE-KTNKHQVLLALLESDAPESAII 291
Query: 323 FV-----KTKQTAN-----LLYAKLK---KEGHQVSILHGDLQSQDRDRLIDDFREGRSK 369
FV K+K+ N LL LK K ++ +L GD+ R + + R+G
Sbjct: 292 FVGEQSEKSKKAGNDPSTTLLMEFLKTSYKGSLEILLLEGDMNFNSRAASLTEIRQGGGF 351
Query: 370 VLITTNVLARGIDIPSVSMVVNYDLP 395
+L++T++ ARGID+P + + N+DLP
Sbjct: 352 LLVSTDIAARGIDLPETTHIFNFDLP 377
>SPBC21H7.04 [A] KOG0348 ATP-dependent RNA helicase
Length = 709
Score = 83.6 bits (205), Expect = 6e-16
Identities = 97/442 (21%), Positives = 172/442 (37%), Gaps = 81/442 (18%)
Query: 63 NLADLQADANSPLYSVXXXXXXXXXXXXXXXXYAMKFQKPSKIQEKALPLLIRDPPHNMI 122
N+ + +N+P+ + M P+ IQ LP L+ +
Sbjct: 123 NIGTTKEASNAPIKTTNFAGVQLDTQLADHLNNKMNISAPTAIQSCCLPALLNTDDKDAF 182
Query: 123 AQSQSGTGKTAAFSLTMLTR-------VDPNVNSTQAICLSPARELARQTLEVIQEMGKF 175
++Q+G+GKT A+ L ++ R + + A+ ++P REL +Q V ++
Sbjct: 183 IEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKLN-- 240
Query: 176 TKTSSQLVVPDSF---ERNKPITA------NIVVGTPGTVLD-LIRRKMLNLGSIKVFVL 225
S +V + E+ K A NI++GTPG + D L + L++ ++ VL
Sbjct: 241 NNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIGTPGRLADHLENTEALDVSQVRWVVL 300
Query: 226 DEADNMLDKQGLGDQCIRVKKFLPKTCQLV-------------LFSATFDDGVRQYAKKI 272
DE D ++D G + ++ +L ++ L SAT D V++ +
Sbjct: 301 DEGDRLMD-MGFEETLTKILSYLESQSSIIKKDLSIPSRKVTMLCSATMKDTVKRLSDSA 359
Query: 273 IPTAV----SLELQKNEVNVSAIKQLFMDCDNEEHKYTILS-------------ELYGLL 315
+ A+ S+ + N+ A +QL K ++S ++ L
Sbjct: 360 LKDALYLKSSIVEETNDGYSQAPEQLLQRYVVVPPKLRLVSLVALLRSHVRSYKKIIIFL 419
Query: 316 TIGSSIIF--------VKTKQTANLLYAKLKKEGHQVS--------------ILHGDLQS 353
+ S+ F + + + K EG +S LHG L
Sbjct: 420 SCSDSVDFHFEAFRCAINADEMEEAVKEKPDSEGDIISNAPALRIDGKSNVYRLHGSLSQ 479
Query: 354 QDRDRLIDDF---REGRSKVLITTNVLARGIDIPSVSMVVNYDLPTLPNGQADPSTYVHX 410
Q R ++ F + S +L+ T+V ARG+D+P+V +VV YD P Y+H
Sbjct: 480 QIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDAP------FSTDDYLHR 533
Query: 411 XXXXXXXXXXXVAISFIHDKKS 432
AI F+ K+S
Sbjct: 534 IGRTARAGHNGAAIMFLLPKES 555
>Hs20551983 [A] KOG0345 ATP-dependent RNA helicase
Length = 325
Score = 82.0 bits (201), Expect = 2e-15
Identities = 81/293 (27%), Positives = 137/293 (46%), Gaps = 31/293 (10%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFS---LTMLTRVDPNVNSTQ--AI 153
F + +Q +PL +R+ ++ A++ +G+GKT AF L +L R + + +Q AI
Sbjct: 29 FPYMTPVQSATIPLFMRNK--DVAAEAVTGSGKTLAFVIPILEILLRREEKLKKSQVGAI 86
Query: 154 CLSPARELARQTLEVIQEMGKFTKTSSQLV------VPDSFERNKPITANIVVGTPGTVL 207
++P RELA Q EV+ K SQ++ + ER K NI+V TPG +
Sbjct: 87 IITPTRELAIQIDEVLSHFTKHFPEFSQILWIGGRNPGEDVERFKQQGGNIIVATPGRLE 146
Query: 208 DLIRRKMLNLG------SIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATF 261
D+ RRK L S+ V VLDEAD +LD G + +FLPK + LFSAT
Sbjct: 147 DMFRRKAEGLDLASCVRSLDVLVLDEADRLLD-MGFEASINTILEFLPKQRRTGLFSATQ 205
Query: 262 DDGVRQYAKKIIPTAVSLELQKNEVNVSA-------IKQLFMDCDNEEHKYTILSELYGL 314
V + + V + +++ V S+ ++ +M C +E K+ L
Sbjct: 206 TQEVENLVRAGLRNPVRVSVKEKGVAASSAQKTPSRLENYYMVCKADE-KFNQLVHFLRN 264
Query: 315 LTIGSSIIFVKTKQTANLLYAKLK--KEGHQVSILHGDLQSQDRDRLIDDFRE 365
++F T L+ +G ++ +HG ++ + R+++ +FR+
Sbjct: 265 HKQEKHLVFFSTCACVEYYGKALEVLVKGVKIMCIHGKMKYK-RNKIFMEFRK 316
>7293348 [A] KOG0348 ATP-dependent RNA helicase
Length = 975
Score = 80.5 bits (197), Expect = 5e-15
Identities = 99/427 (23%), Positives = 179/427 (41%), Gaps = 110/427 (25%)
Query: 97 MKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSL---TMLTRVDPNV---NST 150
+ ++ + +Q+K +P +++ +++ +SQ+G+GKT A++L +L + P + +
Sbjct: 346 LSIRELTSVQQKTIPEVLQGK--DVLVRSQTGSGKTLAYALPLVELLQKQQPRIQRKDGV 403
Query: 151 QAICLSPARELARQTLEVIQEMGKFTKTSSQLVVPDSF---ERNKPITA------NIVVG 201
A+ + P REL QT E+IQ++ K +VP S E K A NI++G
Sbjct: 404 LALVIVPTRELVMQTYELIQKLVK----PYTWIVPGSLLGGESRKSEKARLRKGINILIG 459
Query: 202 TPGTVLD-LIRRKMLNLGSIKVFVLDEADNML------DKQGLGDQCIRVK-----KFLP 249
TPG ++D L+ L ++ +LDEAD +L D + L + + + K LP
Sbjct: 460 TPGRLVDHLLHTASFKLTKLQFLILDEADRLLELGYERDVKQLVEAIDKQRAECEDKELP 519
Query: 250 KTCQLVLFSATFDDGVRQYAKKIIPTAVSLELQKNEVNVSAIK----------QLFMDCD 299
+ Q +L SAT V+Q A + + ++ +E +A+K + ++ D
Sbjct: 520 Q-LQRMLLSATLTSQVQQLAGLTLKNPLYID-NSDEAASAALKSKDGYQKETIEALLEVD 577
Query: 300 ------------------NEEHKYTILSELYGLLTIGS--------------SIIFVKTK 327
N + Y ++ L+ + S +I+F+ T
Sbjct: 578 DGLGEYQEDVTGVLSIPENLQLSYVVVPPKLRLVALSSLLAKEVDASPKQFKAIVFMSTT 637
Query: 328 QTANLLYAKLKK---------------------------EGHQVSILHGDLQSQDRDRLI 360
+ N + L + +G + LHG + +R +
Sbjct: 638 EMVNFHHDMLNEALTRRVLDEEDEQEKGDSDDDGDIPLLQGLRFFKLHGSMTQTERQGVF 697
Query: 361 DDFREGRSKVLITTNVLARGIDIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXX 420
FR+ S VL+ T+V+ RGID+P + +VV Y T P AD +VH
Sbjct: 698 RGFRDCASCVLLATDVVGRGIDVPDIKLVVQY---TPPQTTAD---FVHRVGRTARAGRK 751
Query: 421 XVAISFI 427
A+ F+
Sbjct: 752 GRAVLFL 758
>YBR142w [A] KOG0347 RNA helicase
Length = 773
Score = 80.1 bits (196), Expect = 7e-15
Identities = 88/420 (20%), Positives = 179/420 (41%), Gaps = 86/420 (20%)
Query: 97 MKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQ----A 152
+ F +P++IQ+K++P++++ +++ ++ +G+GKT A+ + ++ ++ N + +
Sbjct: 189 LNFLRPTEIQKKSIPVIMQGV--DVMGKASTGSGKTLAYGIPIVEKLISNFSQKNKKPIS 246
Query: 153 ICLSPARELARQTLEVIQEMGKFTKTSSQLVVPD-----SFERNKPI-----TANIVVGT 202
+ +P RELA Q + ++++ + SQ + S ++ + + + IV+ T
Sbjct: 247 LIFTPTRELAHQVTDHLKKICEPVLAKSQYSILSLTGGLSIQKQQRLLKYDNSGQIVIAT 306
Query: 203 PGTVLDLIRRK---MLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFL----------- 248
PG L+L+ + + + +LDEAD +L + G D+ ++ K L
Sbjct: 307 PGRFLELLEKDNTLIKRFSKVNTLILDEADRLL-QDGHFDEFEKIIKHLLVERRKNRENS 365
Query: 249 ---PKTCQLVLFSATFDDGVRQYAKKIIPTAV-SLELQKNEVNVSAI------------K 292
K Q ++FSATF + + K V + NE ++A+ K
Sbjct: 366 EGSSKIWQTLIFSATF--SIDLFDKLSSSRQVKDRRFKNNEDELNAVIQHLMSKIHFNSK 423
Query: 293 QLFMDCDNEEHKYTILSE-------------LYGLLTI--GSSIIFVKTKQTANLLYAKL 337
+ +D + E + + E Y LT+ G+++IF + L L
Sbjct: 424 PVIIDTNPESKVSSQIKESLIECPPLERDLYCYYFLTMFPGTTLIFCNAIDSVKKLTVYL 483
Query: 338 KKEGHQVSILHGDLQSQDRDRLIDDFREGRSK----------------VLITTNVLARGI 381
G +H + ++R + ++ F++ +K VLI ++V ARG+
Sbjct: 484 NNLGIPAFQIHSSMTQKNRLKSLERFKQQSAKQKTINHSNPDSVQLSTVLIASDVAARGL 543
Query: 382 DIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSFEVLSAIQK 441
DIP V V++Y LP Y+H V+ ++S L ++K
Sbjct: 544 DIPGVQHVIHYHLP------RSTDIYIHRSGRTARAGSEGVSAMICSPQESMGPLRKLRK 597
>7294064 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 687
Score = 80.1 bits (196), Expect = 7e-15
Identities = 98/425 (23%), Positives = 181/425 (42%), Gaps = 82/425 (19%)
Query: 97 MKFQKPSKIQEKALPLLI----RDPP---HNMIAQSQSGTGKTAAFSLTMLTRVDPNVN- 148
MK ++ +Q++ +P ++ + PP ++ + +G+GKT AF++ ++ + V+
Sbjct: 155 MKIKRLFPVQKQVIPWILEAHAKPPPFRPRDICVSAPTGSGKTLAFAIPIVQLLSQRVDC 214
Query: 149 STQAICLSPARELARQTLEVIQEMGKFTKTSSQLV------------VPDSFERNKPITA 196
+A+ + P ELA Q VI E+ T+ L+ + + ++ A
Sbjct: 215 KVRALVVLPVAELALQVYRVISELCSKTELEVCLLSKQHKLEDEQEKLVEQYKGKYYSKA 274
Query: 197 NIVVGTPGTVLD-LIRRKMLNLGSIKVFVLDEADNMLDK-------------QGLGDQCI 242
+IVV TPG ++D L K L S+K V+DEAD ++D + DQ +
Sbjct: 275 DIVVTTPGRLVDHLHATKGFCLKSLKFLVIDEADRIMDAVFQNWLYHLDSHVKETTDQLL 334
Query: 243 ----------RVKKFLPKTCQLVLFSATFD------DGVRQYAKKIIPTAVSLELQKNEV 286
++ K +LFSAT +R + ++ T +++ + K+
Sbjct: 335 AGTQAPLCYAELQASFGKQPHKLLFSATLSQDPEKLQDLRLFQPRLFATVLTMPVLKDAT 394
Query: 287 NVSAIKQLFMDCDNEEHKYTI---LSELYGL-------LTIGSSI---------IFVKTK 327
A + D +YT L+E Y + LT+ + + F +
Sbjct: 395 EEGADTEALTDPGQFVGRYTTPAELTEQYCVTELRLKPLTVFALVEKYKWKRFLCFTNSS 454
Query: 328 QTANLLYAKLK----KEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDI 383
A L LK K +VS L G+L ++ R+ + DF G+ LI ++ LARGID+
Sbjct: 455 DQATRLTFVLKVLFQKYSTKVSELSGNLSAKVRNERLRDFAAGKINGLICSDALARGIDV 514
Query: 384 PSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKKSF---EVLSAIQ 440
V +V++Y+ P +TY+H A++ + ++ ++LS
Sbjct: 515 ADVDVVLSYETP------RHITTYIHRVGRTARAGRKGTAVTVLTEQDMTLFKKILSDAN 568
Query: 441 KYFGD 445
K G+
Sbjct: 569 KGLGE 573
>CE29051 [A] KOG0335 ATP-dependent RNA helicase
Length = 1016
Score = 79.7 bits (195), Expect = 9e-15
Identities = 78/306 (25%), Positives = 136/306 (43%), Gaps = 42/306 (13%)
Query: 97 MKFQKPSKIQEKAL-PLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRV------DPNVN- 148
MK +P+ IQ + P++ D +++A + +G+GKT AF + + ++ D +V
Sbjct: 717 MKMNRPTPIQRASFFPIMHGD---DVVACAHTGSGKTLAFLIPFVIKLMEEFEKDRDVTD 773
Query: 149 ---STQAICLSPARELARQTLEVIQEMGKFTKTSSQLVVPDSFERNKPIT-------ANI 198
S + + ++P REL QT +++ T L + RN + NI
Sbjct: 774 EKPSPRLLIVAPTRELVNQTFTTARQLTYETGLKCGLAF-GGYSRNANVQHLRSFSQLNI 832
Query: 199 VVGTPGTVLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFL----PKTCQL 254
+V T G + D + ++L +K VLDEAD M+D G++ V K + +T Q
Sbjct: 833 LVATMGRLQDFVNAGEVSLSKMKYIVLDEADRMVDSIDFGEE---VSKIIGSPGERTQQT 889
Query: 255 VLFSATFDDGVR--QYAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHK---YTILS 309
VLFSA+F + ++ K + L++ K I Q + E + Y +L
Sbjct: 890 VLFSASFSEDLQSDDLPKFVKEGYTMLQVDKFGTANEKIDQKILPVPRTEKRDAIYKLLG 949
Query: 310 ELYGLLTI--------GSSIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLID 361
+T+ ++IFV + + + L A + G +H + RDR +D
Sbjct: 950 IDENTVTLLPDAPIEKQKTLIFVNSVKFCDTLAALISSAGVSTISMHSYQNQEQRDRTLD 1009
Query: 362 DFREGR 367
DFR G+
Sbjct: 1010 DFRRGK 1015
>ECU05g1270 [A] KOG0331 ATP-dependent RNA helicase
Length = 426
Score = 77.4 bits (189), Expect = 4e-14
Identities = 78/326 (23%), Positives = 146/326 (43%), Gaps = 48/326 (14%)
Query: 102 PSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICLSPAREL 161
P+ +Q +P ++ ++I S++G+GKT ++ L + ++ + + + P REL
Sbjct: 79 PTDVQRFVIPYILAGEGVDVI--SETGSGKTLSYVLPHIHLLESG--DKRLLVIVPTREL 134
Query: 162 ARQT-----------LEVIQEMGKFTKTSSQLVVPDSFERNKPITANIVVGTPGTVLDLI 210
Q L +++ G+ + S +L V F+ + + TPG + +L+
Sbjct: 135 VSQVGQVFRKFSEGLLRIVEITGEVSIESQRLQVSRPFD--------VAISTPGRLRELL 186
Query: 211 RRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSAT---FDDGVRQ 267
K ++G + V+DEAD ++ D +++ P+ FSAT + G R
Sbjct: 187 ELK--SIGGFEYVVVDEADRLMQHDIRSDVTFILERMKPEVASF--FSATPFEWSGGTRI 242
Query: 268 YAKKIIP----TAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIF 323
+ + ++K E + + ++ + C+ K + L + I+F
Sbjct: 243 LVGNVSVGRDVEEFFMYVEKKE-KMQVLGEILVSCEGWLAKNMGVDR--NGLEVKKIIVF 299
Query: 324 VKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDI 383
+ +T L+ + + Q+ +LH Q+R +I+ EG VLI T++ RGIDI
Sbjct: 300 CNSIRTCENLHKRFR----QLLVLHSRRTMQERKAVIEAL-EGERAVLIATDLGGRGIDI 354
Query: 384 PSVSMVVNYDLPTLPNGQADPSTYVH 409
V +VVNYDLP +G YVH
Sbjct: 355 KDVDLVVNYDLPRAVDG------YVH 374
>At3g06980 [A] KOG0331 ATP-dependent RNA helicase
Length = 781
Score = 77.4 bits (189), Expect = 4e-14
Identities = 80/344 (23%), Positives = 144/344 (41%), Gaps = 42/344 (12%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRV---------DPNVNS 149
F +P+ IQ A +I + I QSG+GKT A+ + ++ R+ +
Sbjct: 394 FDRPAHIQAMAFSPVIDGK--SCIIADQSGSGKTLAYLVPVIQRLREEELQGHSKSSPGC 451
Query: 150 TQAICLSPARELARQTLEVIQEMGKFTKTSSQLVVPDSFERNKPIT-----ANIVVGTPG 204
+ I L P ELA Q L + + K +VV F + + ++++ TPG
Sbjct: 452 PRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQRTQLENLEQGVDVLIATPG 511
Query: 205 TVLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDG 264
L+ +L L +++ +LDE D + + P T Q + +AT
Sbjct: 512 RFTYLMNEGILGLSNLRCAILDEVDILFGDDEFEAALQNLINSSPVTAQYLFVTATLPLE 571
Query: 265 VRQYAKKIIPTAVSLELQKNEVNVSAIKQLFMDC---DNEE--------HKYTILSELYG 313
+ ++ P + + +A+++ +DC DN E +K T L ++
Sbjct: 572 IYNKLVEVFPDCEVVMGPRVHRVSNALEEFLVDCSGDDNAEKTPETAFQNKKTALLQIME 631
Query: 314 LLTIGSSIIF---VKTKQTANLLYAKLKKEGHQVSIL--HGDLQSQDRDRLIDDFR---- 364
+ +IIF ++T + ++ ++ ++ Q+ +L H L + R + +F
Sbjct: 632 ENPVSKTIIFCNKIETCRKVENIFKRVDRKERQLHVLPFHAALSQESRLTNMQEFTSSQP 691
Query: 365 EGRSKVLITTNVLARGIDIPSVSMVVNYDLPTLPNGQADPSTYV 408
E S L+ T+ +RGID V VV +D P DPS YV
Sbjct: 692 EENSLFLVCTDRASRGIDFSGVDHVVLFDFP------RDPSEYV 729
>ECU07g1060 [A] KOG0344 ATP-dependent RNA helicase
Length = 416
Score = 75.5 bits (184), Expect = 2e-13
Identities = 74/323 (22%), Positives = 143/323 (43%), Gaps = 42/323 (13%)
Query: 99 FQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICLSPA 158
F P Q+ +P ++ N+I Q+ +G+GKT ++ L ++ S L P
Sbjct: 45 FDSPLLTQKVVIPYFLKKT--NVIVQAFTGSGKTLSYCLPLVEMA--RGRSLFGAILVPG 100
Query: 159 RELARQTLEVIQEM-------------------------GKFTKTSSQLVVPDSFERNKP 193
+ L RQ V++E+ G+ + + + + +
Sbjct: 101 KPLVRQVYRVVREIKHEGLKVVGVYGDGREDFLVEEGEKGELVQKAIDDKMRERIAESLR 160
Query: 194 ITANIVVGTPGTVLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQ 253
+A +++GTP +VL L+ M + ++ V+DEAD +++ + +G + +
Sbjct: 161 ASARVLIGTPRSVLGLM--SMSEIRNVTHLVIDEADLLINPETVGVFASILSVIEMEDIH 218
Query: 254 LVLFSATFDDGVRQYAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYG 313
+ FSAT ++ Y ++I T S+ + V+ I F+ + + K+ L ++
Sbjct: 219 ISCFSATMNE----YVSEVIETVKSIT-KIRVVSKRLIDHEFVFGTSRKIKHLSLLQIIA 273
Query: 314 LLTIGSSIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLIT 373
++IFVK ++T L L K ++ D + ++D FR + L T
Sbjct: 274 DGIESPTLIFVKDEKTGEALSMLLGKS----AVYREDQEGSGE--VLDGFRLKKIWYLFT 327
Query: 374 TNVLARGIDIPSVSMVVNYDLPT 396
T+ L+RGID ++ V+NYDLP+
Sbjct: 328 TDSLSRGIDFYNIRSVINYDLPS 350
>Hs22059599_1 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 372
Score = 75.5 bits (184), Expect = 2e-13
Identities = 40/111 (36%), Positives = 63/111 (56%)
Query: 285 EVNVSAIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQTANLLYAKLKKEGHQV 344
E+ + IKQ F+ + EE K+ I +LY +LT+ +IF TK+ + L K++ V
Sbjct: 259 ELTLEGIKQPFVAVEREEWKFDIPCDLYEMLTVIQVVIFCNTKRKVDWLMEKMRDAALTV 318
Query: 345 SILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVNYDLP 395
S +H D + + +F G S LI+T+V A D+P VS+++NYDLP
Sbjct: 319 SSMHRDTPQKGPQSVSKEFPSGTSTGLISTDVWAGRSDVPQVSVIINYDLP 369
>YNR038w [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 629
Score = 72.8 bits (177), Expect = 1e-12
Identities = 72/322 (22%), Positives = 143/322 (44%), Gaps = 50/322 (15%)
Query: 120 NMIAQSQSGTGKTAAFSLTML-TRVDPNVNSTQAICLSPARELARQTLEVIQEMGKFTKT 178
+++ + +G+GKT A+S+ ++ T +N + I + P + L Q V + K T+
Sbjct: 229 DILVNAATGSGKTLAYSIPIVQTLFKRQINRLRCIIIVPTKLLINQ---VYTTLTKLTQG 285
Query: 179 SSQLV--------VPDSFERNKPITANIVVGTPGTVLDLIRRKMLNLGSIKVFVLDEADN 230
+S +V + D ++ + +I++ TPG ++D + K +NL ++K ++DEAD
Sbjct: 286 TSLIVSIAKLENSLKDEHKKLSNLEPDILITTPGRLVDHLNMKSINLKNLKFLIIDEADR 345
Query: 231 MLDKQGLGDQCIRVKKF--------LPKTCQLVLFSATFD------DGVRQYAKKII--- 273
+L+ Q C ++ LP ++FSAT +G+ Y K+
Sbjct: 346 LLN-QSFQGWCPKLMSHLKTDKLDTLPGNVIKMIFSATLTTNTEKLNGLNLYKPKLFLKQ 404
Query: 274 -PTAVSLELQKNEVNVS---------AIKQLFMDCDNEEHKYTILSELYGLLTIGSSIIF 323
L + NE N++ + L+ C H L + + SSI
Sbjct: 405 TDKLYQLPNKLNEFNINIPTAKSVYKPLILLYSICQFMAHSPIAAKILIFVKSNESSIRL 464
Query: 324 VKTKQ------TANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSK----VLIT 373
K Q + + + L+ ++ ++ + + +++ +F +LIT
Sbjct: 465 SKLLQLICESRSQSSVLKNLQNLAVSINSVNSNNSKAENKKIVANFSHHSESAGITILIT 524
Query: 374 TNVLARGIDIPSVSMVVNYDLP 395
T++++RGIDI ++ V+NYD P
Sbjct: 525 TDIMSRGIDINDITQVINYDPP 546
>CE27641 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 752
Score = 72.8 bits (177), Expect = 1e-12
Identities = 76/342 (22%), Positives = 138/342 (40%), Gaps = 64/342 (18%)
Query: 146 NVNSTQAIC--LSPARELARQTLEVIQEMGKFTKTSSQLVVP-------DSFERNKPITA 196
+++S+ +C L P REL +QT + IQ + V + R
Sbjct: 300 SIDSSTPLCVILEPTRELVQQTFQNIQTFASVLDSPKIRCVTLAAGENMNQILRTLETGC 359
Query: 197 NIVVGTPGTVLDLIRRKMLNLGSIKVFVLDEADNML-DKQGLGDQCIRVKKFLPKTCQ-- 253
+IVVGTP V DLI L +++ V+DE D L K Q + + LP Q
Sbjct: 360 DIVVGTPSRVFDLIHTGKLATKNLQFVVIDEIDQFLAGKNNCAHQIESIFRVLPLVAQDG 419
Query: 254 ----LVLFSATFDD-GVRQYAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKY--- 305
++ SAT + V ++A + + ++L+ + + + + D E K
Sbjct: 420 TRRQVIACSATLHNFEVCRFADRHMSFPQWIDLKGADCVSADVHHVVCHVDASEDKQWIR 479
Query: 306 ---------------------------------TILSELYGL-----LTIGSSIIFVKTK 327
IL +Y + L + +I+F +TK
Sbjct: 480 QMHQQVHLEDDHVHDGDQIRPGTTDKDTISLGTKILKGIYVVRAIHALQMDKAIVFCRTK 539
Query: 328 QTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVS 387
Q + + L++ + LHGD +++R ++ F++G + L+ ++V+ARG+D+ V
Sbjct: 540 QQCDHMEHFLQQNNLSAACLHGDRSAEERQSSLEGFKKGIIRFLVCSDVVARGLDVQGVP 599
Query: 388 MVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHD 429
V++ LP + S YVH ++IS + +
Sbjct: 600 FVISVTLPD------EKSMYVHRIGRVGRAERMGLSISLVSE 635
>YKR024c [A] KOG0348 ATP-dependent RNA helicase
Length = 742
Score = 72.0 bits (175), Expect = 2e-12
Identities = 100/410 (24%), Positives = 162/410 (39%), Gaps = 89/410 (21%)
Query: 71 ANSPLYSVXXXXXXXXXXXXXXXXYAMKFQKPSKIQEKALPLLIRDPPHN-MIAQSQSGT 129
+N+PL M+ +KP+ IQ++A+P +I + N +Q+G+
Sbjct: 136 SNAPLKGDQFASLGVSSLLVSHLEQKMRIKKPTSIQKQAIPQIIGNAGKNDFFIHAQTGS 195
Query: 130 GKTAAFSLTMLTRV---DPNVNSTQ---AICLSPARELARQTLEVIQEMGKFTKTSSQLV 183
GKT ++ L +++ + D +V+ T A+ ++P RELA Q V + + +
Sbjct: 196 GKTLSYLLPIISTILNMDTHVDRTSGAFALVIAPTRELASQIYHVCSTL----VSCCHYL 251
Query: 184 VPDSF---ERNKPITA------NIVVGTPGTVLDLIRR----KMLNLGSIKVFVLDEADN 230
VP ER K A N ++GTPG VLD ++ K S++ VLDE D
Sbjct: 252 VPCLLIGGERKKSEKARLRKGCNFIIGTPGRVLDHLQNTKVIKEQLSQSLRYIVLDEGDK 311
Query: 231 MLDK----------QGLGDQCIRVKKF--LPKTCQLVLFSATFDDGV---RQYAKK---- 271
+++ + + D I +KF LP +L SAT DGV R A K
Sbjct: 312 LMELGFDETISEIIKIVHDIPINSEKFPKLPHKLVHMLCSATLTDGVNRLRNVALKDYKL 371
Query: 272 ------------------------IIP---TAVSLELQKNEVNVSAIKQ----------L 294
I+P V+L N + I +
Sbjct: 372 ISNGTKKDSDIVTVAPDQLLQRITIVPPKLRLVTLAATLNNITKDFIASGQQSKTLRTIV 431
Query: 295 FMDC-DNEEHKYTILSELYG--LLTIGSSIIFVKTKQTANLLYAKLKKEGHQVSILHGDL 351
F+ C D+ E Y S G G S+ + T ++ + + LHG L
Sbjct: 432 FVSCSDSVEFHYDAFSGSDGHHKNLTGDSVRLLTKGNTMFPCFSDSRDPDVVIYKLHGSL 491
Query: 352 QSQDRDRLIDDF------REGRSKVLITTNVLARGIDIPSVSMVVNYDLP 395
Q R + F +G+ ++ T+V +RG+D+P V V+ D P
Sbjct: 492 SQQMRTSTLQHFARDNEATKGKHLIMFCTDVASRGLDLPHVGSVIELDPP 541
>Hs17475661 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 240
Score = 70.9 bits (172), Expect = 4e-12
Identities = 59/235 (25%), Positives = 97/235 (41%), Gaps = 58/235 (24%)
Query: 197 NIVVGTPGTVLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVL 256
+I++GTPG V D++ + L+ IK+FVLDEAD ML + DQ + + L Q+VL
Sbjct: 61 HIIMGTPGRVSDMLNWRYLSPKYIKMFVLDEADEMLSHR-FKDQICDIFQMLNSNTQVVL 119
Query: 257 FSATFDDGVRQYAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLLT 316
SAT V + KK + + + ++K E+ + M D ++ + ++ Y
Sbjct: 120 LSATIPSDVLEVTKKFMRDPIRILVKKEELTLKDFTVSAMHGDMDQKERDVVMREY---R 176
Query: 317 IGSSIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNV 376
GSS + + TT++
Sbjct: 177 SGSSRVLI------------------------------------------------TTDL 188
Query: 377 LARGIDIPSVSMVVNYDLPTLPNGQADPSTYVHXXXXXXXXXXXXVAISFIHDKK 431
L RGID+ +S+V+NYD PT + Y+H VAI+ + + K
Sbjct: 189 LPRGIDVQQLSLVINYDPPT------NRENYIHRIGRGGQFGHKGVAINMVAEDK 237
>CE00456 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 696
Score = 70.5 bits (171), Expect = 5e-12
Identities = 94/401 (23%), Positives = 170/401 (41%), Gaps = 73/401 (18%)
Query: 105 IQEKALPLL---IRDPP----HNMIAQSQSGTGKTAAFSLTMLTRVDPNVNST-QAICLS 156
+Q LP L IR PP ++ + +G+GKT + L +L V + QA+ L
Sbjct: 239 VQYAVLPSLFFEIRSPPPLRPRDVAIAAPTGSGKTICYVLPVLAAVGSKPSKILQAVILV 298
Query: 157 PARELARQTLEVIQEMGKFTKTSSQLVV-----PDSFERNKPITA----NIVVGTPGTVL 207
P + L Q ++ E ++ S V + FE+ A N++V TP ++
Sbjct: 299 PVQTLVAQ---IVDEFKRWNDESGVAKVVSLSGANDFEKEARQLASDPPNVIVATPARLV 355
Query: 208 DLIRRKM---LNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFL---------------- 248
+ K+ ++L ++ ++DEAD M + + ++ + + +FL
Sbjct: 356 QHLTSKIPPPIDLSKLRFLIVDEADRM--GKLMREEWLDLVEFLCGGMERVACLKDIIRQ 413
Query: 249 PKTCQLVLFSATFDDGVRQY-------AKKIIPTAVSLE------LQKNEVN-----VSA 290
+ Q ++ SAT V + + TAVS++ Q + V+ S+
Sbjct: 414 RRAPQKIVLSATLSKDVEELHLWNLFKPRLFSATAVSVKDITSGIPQVDHVSGRLALPSS 473
Query: 291 IKQLFMDCDNEEHKYTILSELYGLLTIGSSIIFVKTKQTANLLYAKLK---KEGHQVSIL 347
I + D + H + ++ ++IFV ++N L LK K+ +V
Sbjct: 474 ISHRLVVTDPKFHPLAVYQQITRN-KFNRTLIFVNEVSSSNRLAHVLKELCKDQFEVDYF 532
Query: 348 HGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVNYDLPTLPNGQADPSTY 407
L + R ++++ F + ++VLI ++VLARG D+ V V+NY+LP AD +
Sbjct: 533 TAQLFGKRRYKMLEKFNKNENRVLICSDVLARGTDLNKVDCVINYNLP------ADDKLF 586
Query: 408 VHXXXXXXXXXXXXVAISFIHDKKS---FEVLSAIQKYFGD 445
VH IS + DK+S F + + +GD
Sbjct: 587 VHRAGRTGRAGQDGYVIS-VGDKESKRLFVKMLKVTNLWGD 626
>Hs9506609 [A] KOG0340 ATP-dependent RNA helicase
Length = 257
Score = 68.9 bits (167), Expect = 2e-11
Identities = 51/178 (28%), Positives = 93/178 (51%), Gaps = 15/178 (8%)
Query: 100 QKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICLSPAR 159
+KP+ +Q +P ++ + + +++G+GKTAAF L +L ++ + + L+P R
Sbjct: 23 KKPTPVQLGCIPAILEG--RDCLGCAKTGSGKTAAFVLPILQKLSEDPYGIFCLVLTPTR 80
Query: 160 ELARQTLEVIQEMGKFTKTSSQLV------VPDSFERNKPITANIVVGTPGTVLDLIR-R 212
ELA Q E + +GK ++ V + E ++ ++V+ TPG + D +R
Sbjct: 81 ELAYQIAERFRVLGKPLGLKDCIIVGGMDMVAQALELSR--KPHVVIATPGRLADHLRSS 138
Query: 213 KMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFL---PKTCQLVLFSATFDDGVRQ 267
++ I+ V+DEAD +L+ QG D + ++ L P Q +LFSAT D +R+
Sbjct: 139 NTFSIKKIRFLVMDEADRLLE-QGCTDFTVDLEAILAAVPARRQTLLFSATLTDTLRE 195
>At4g09730 [A] KOG0331 ATP-dependent RNA helicase
Length = 496
Score = 67.0 bits (162), Expect = 6e-11
Identities = 78/322 (24%), Positives = 136/322 (42%), Gaps = 32/322 (9%)
Query: 97 MKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQA---- 152
+ + P++IQ +P ++ +++ S +G+GKT A+ L ++ + + +A
Sbjct: 130 LNIEVPTEIQCIGIPAVMERK--SVVLGSHTGSGKTLAYLLPIVQVLSELMREDEANLGK 187
Query: 153 ---------ICLSPARELARQT-LEVIQEMGKFTK---TSSQLVVPDSFERNKPITANIV 199
+ L P REL+ Q L +F + + P N I ++V
Sbjct: 188 KTKPRRPRTVVLCPTRELSEQVCLHQDYHHARFRSILVSGGSRIRPQEDSLNNAI--DMV 245
Query: 200 VGTPGTVLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQ--LVLF 257
VGTPG +L I + G I VLDEAD M D+ G G + ++KFL Q V+
Sbjct: 246 VGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDR-GFGPE---IRKFLAPLNQHIKVVN 301
Query: 258 SATFDDGVRQYAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKY-TILSELYGLLT 316
V++ + L ++ + F+ E K +L L L
Sbjct: 302 EIVSFQAVQKLVDEEFQGIEHLRTSTLHKKIANARHDFIKLSGGEDKLEALLQVLEPSLA 361
Query: 317 IGSSI-IFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFR--EGRSKVLIT 373
GS + +F T ++ + L + HG++ ++ R + F+ EG L+
Sbjct: 362 KGSKVMVFCNTLNSSRAVDHYLSENQISTVNYHGEVPAEQRVENLKKFKDEEGDCPTLVC 421
Query: 374 TNVLARGIDIPSVSMVVNYDLP 395
T++ ARG+D+ V VV +D P
Sbjct: 422 TDLAARGLDL-DVDHVVMFDFP 442
>Hs22057430 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 166
Score = 64.7 bits (156), Expect = 3e-10
Identities = 32/85 (37%), Positives = 58/85 (67%), Gaps = 2/85 (2%)
Query: 95 YAMKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAIC 154
YA +KPS IQ++A+ I+ +++IAQ+QSG GK A F++ +L +++ ++ +TQA+
Sbjct: 32 YAYGLEKPSAIQQRAILPCIKG--YHVIAQAQSGAGKMATFAILILQQIELDLKATQALL 89
Query: 155 LSPARELARQTLEVIQEMGKFTKTS 179
L+P +ELA+Q +V+ +G + S
Sbjct: 90 LAPTQELAQQIQKVVMALGDYMGAS 114
>Hs18595975 [A] KOG0335 ATP-dependent RNA helicase
Length = 468
Score = 64.7 bits (156), Expect = 3e-10
Identities = 56/211 (26%), Positives = 97/211 (45%), Gaps = 19/211 (9%)
Query: 197 NIVVGTPGTVLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKF----LPKTC 252
+++V TPG ++DL+ R + L K VLDEAD MLD G G Q + + L
Sbjct: 240 HLLVATPGGLVDLMERGKIGLDFCKYLVLDEADRMLD-MGFGPQIHLILEQDTMPLKGIH 298
Query: 253 QLVLFSATFDDGVRQYAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELY 312
+++FSATF + ++ A+ + + L + + I Q + + + + +L L
Sbjct: 299 HIMMFSATFPNEIQMLARDFLDEYIFLAVGRVGSTSETITQEVVWVEEPDKRSFLLDLLN 358
Query: 313 GLLTIGSSIIFVKTKQTANLLYAKLKKEGHQVSILHGDLQSQDRDRLIDDFREGRSKVLI 372
+++FV+TK+ + L L E + + +HGD +DR+ G S VL+
Sbjct: 359 APGKDSLTLVFVETKKGEDSLENFLYHEVYPCTSIHGDQSQRDRE-------GGPSSVLL 411
Query: 373 TTNVLARGIDIPSV-------SMVVNYDLPT 396
N + G S+ N+DLP+
Sbjct: 412 GENPNSSGYSCGSMKTRHFKCETCFNFDLPS 442
>Hs20336298 [A] KOG0348 ATP-dependent RNA helicase
Length = 585
Score = 63.9 bits (154), Expect = 5e-10
Identities = 52/200 (26%), Positives = 101/200 (50%), Gaps = 18/200 (9%)
Query: 97 MKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQ----- 151
+K + +Q++++P+L+ + + +SQ+G+GKT A+ + ++ + + Q
Sbjct: 249 LKMSSMTSVQKQSIPVLLEG--RDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGP 306
Query: 152 -AICLSPARELARQTLEVIQEMGK-FTKTSSQLVVPDSFERNKPIT----ANIVVGTPGT 205
A+ L P RELA Q+ + +Q++ K FT +++ +++ NI++ TPG
Sbjct: 307 YALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGR 366
Query: 206 VLDLIR-RKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQL---VLFSATF 261
++D I+ K ++ ++ V DEAD +LD G + + CQ VL SAT
Sbjct: 367 LVDHIKSTKNIHFSRLRWLVFDEADRILD-LGFEKDITVILNAVNAECQKRQNVLLSATL 425
Query: 262 DDGVRQYAKKIIPTAVSLEL 281
+GV + A + VS+ +
Sbjct: 426 TEGVTRLADISLHDPVSISV 445
>7290730 [A] KOG0331 ATP-dependent RNA helicase
Length = 438
Score = 62.0 bits (149), Expect = 2e-09
Identities = 64/295 (21%), Positives = 126/295 (42%), Gaps = 26/295 (8%)
Query: 120 NMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQ------AICLSPARELARQTLEVIQEMG 173
N++ S GTGKT + L + ++ Q + L RE A +
Sbjct: 71 NIVMISGKGTGKTLGYLLPGIMKMHNQRGLMQHKKGPIVLILVDCREAAVMVQREVLYYT 130
Query: 174 KFTKTSSQLVVPDSFERNKPITANIVVGTPGTVLDLIRRK--MLNLGSIKVFVLDEADNM 231
+ + ++ +S + +++V + G +L +I K ++ L VLD D M
Sbjct: 131 NPLELRTHCLLGNS-QWQGHAECDLLVASAGRLLQMIDNKKHVVELERCTYLVLDNIDRM 189
Query: 232 LDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAKKIIP--TAVSL-ELQKNEVNV 288
+D G+ C + + P QL++ S ++ +++ A K + TA+ + E+ V +
Sbjct: 190 IDVGLEGNICRLLCRLRPHA-QLIVSSTSWSSNLKRMANKFLGQYTAIRVGEINNIGVRL 248
Query: 289 SAIKQLFMDCDNEEHKYTILSELYGLLTI----GSSIIFVKTKQTANLLYAKLKK----E 340
I+Q + ++ EL + G +I+VK ++ L ++ E
Sbjct: 249 QNIRQRVEVVNGLSKVERLMKELTAIYDTSDIPGKVVIYVKRQKVVEELVDLIRNCVPCE 308
Query: 341 GHQVSILHGDLQSQDRDRLIDDFREGRSKVLITTNVLARGIDIPSVSMVVNYDLP 395
G +HG +Q+ +I DF G +++ T + + +D+P + V+NYD P
Sbjct: 309 G-----IHGGRTAQENQGIIHDFGTGAYNIIVATQMTSNCLDVPGIRYVINYDFP 358
>YGL064c [A] KOG0335 ATP-dependent RNA helicase
Length = 561
Score = 55.5 bits (132), Expect = 2e-07
Identities = 90/385 (23%), Positives = 151/385 (38%), Gaps = 99/385 (25%)
Query: 102 PSKIQEKALPLL---IRDPPHNMIA-QSQSGTGKTAAFSLTMLTRVDPNVNST------- 150
PS IQ A+ + + DP + A +++G+GKT A+ + ++ + T
Sbjct: 137 PSPIQTVAIKRISKNLMDPKLQIHAIAAETGSGKTMAYLIPLIDYLKRQELETPELWETL 196
Query: 151 ------QAICLSPARELARQTLEVIQEMGKFTKTSSQLVVPDSFERNKPIT--------- 195
++I L P EL Q E + + TKT L+ +SF+ +K +
Sbjct: 197 RKNVLIRSIILVPTHELVDQVYETVSK----TKT---LLGLNSFKWDKATSYRDLLENIK 249
Query: 196 --ANIVVGTPGTVLDLIRRKMLN-----LGSIKVFVLDEADNMLDKQGLGDQCIRVKKFL 248
+I+V TPG +L+L +M+ L + VLDEAD +LD+ L + +K+ +
Sbjct: 250 NRIDILVTTPGKLLNLFSIRMITRPDKVLSKVGFVVLDEADTLLDRSWLEETHSAIKR-I 308
Query: 249 PKTCQLVLFSATFDDGVRQYAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTIL 308
P L+ SAT + +++ PT V + + A+ ++ K + +
Sbjct: 309 PNINHLIFCSATIPQEFNKTMQRLFPTVVPIMTPRLHKLPFALDFKVINSALSPFKGSKI 368
Query: 309 SELYGLLTIGSS-----------IIFVKTKQTANLLYAKL-KKEGHQVSILHGDLQSQDR 356
L L S+ IIFV K+ + L KK GH L G+ ++R
Sbjct: 369 KALAQTLYAISNDDTEPGFEKRCIIFVNEKKNVPEIVNLLNKKFGHNAIGLTGEDTFEER 428
Query: 357 DRLIDDFRE-------------------------------GRSK---------------V 370
I F G+ K V
Sbjct: 429 SEKIMPFLSPPRPLSEVVAQSTSPPTSLKKFEIPDSNIVIGKLKNTNSNGTAPSNKSLHV 488
Query: 371 LITTNVLARGIDIPSVSMVVNYDLP 395
L+TT+++ARG++ V VV YD+P
Sbjct: 489 LVTTDLMARGLNFKGVRNVVLYDVP 513
>SPAC212.11 [L] KOG0351 ATP-dependent DNA helicase
Length = 1887
Score = 54.3 bits (129), Expect = 4e-07
Identities = 72/315 (22%), Positives = 122/315 (37%), Gaps = 21/315 (6%)
Query: 98 KFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLT----RVDPNVNSTQAI 153
KF+ + Q LL R N+I +G GK+ +F + L + V + +
Sbjct: 1189 KFRSLKQFQSVYFSLLNR---MNLITVLPTGGGKSLSFLIPALIEKKRQTPGKVMNMVTL 1245
Query: 154 CLSPARELARQTLEVIQEMGKFTKTSSQLVVPD---SFERNKPITANIVVGTPGTVLDL- 209
L P L + + + E G + + D + E P + + T L
Sbjct: 1246 VLVPMMSLRQDMMLRVNEKGLLVCSGNWTAFKDVRLTLETQLPDLFILTYESALTNSGLR 1305
Query: 210 IRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYA 269
+ LG + V+DEA +L R + L L SATF + A
Sbjct: 1306 FFESLATLGRLARVVIDEAHLLLTSGAWRTALSRASRLSGLYAPLHLLSATFPRQLEMVA 1365
Query: 270 KKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKY---TILSELYGLLTIGSSIIFVKT 326
++ T + L++ I DN E T++ G +IIF +T
Sbjct: 1366 RQTFCTNFYV-LRETSTARENIFYFLHPYDNTEFLLDLRTLMKRTKVFEGDGRAIIFCRT 1424
Query: 327 KQTANLLYAKLKKEG----HQVSILHGDLQSQDRDRLIDDFRE--GRSKVLITTNVLARG 380
K+ ++ +L + V+I GD+ ++R D FR G+++++I T G
Sbjct: 1425 KKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMIATKAFGLG 1484
Query: 381 IDIPSVSMVVNYDLP 395
I+ V +VV+Y LP
Sbjct: 1485 INYMGVRLVVHYGLP 1499
>Hs20555745 [A] KOG0326 ATP-dependent RNA helicase
Length = 325
Score = 54.3 bits (129), Expect = 4e-07
Identities = 34/124 (27%), Positives = 72/124 (57%), Gaps = 9/124 (7%)
Query: 95 YAMKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAIC 154
+ M ++KPS QE+++P+ + +++A++++GTGK++A + +L R+D ++ Q I
Sbjct: 65 FEMGWKKPSPFQEESIPIALSG--RDILARAKNGTGKSSAHDIPLLKRLDLKKDTIQTIV 122
Query: 155 L----SPARELARQTLEVIQEMG--KFTKTSSQLVVPDSFERNKPITANIVVGTPGTVLD 208
+ PA ++++ ++V + MG K T+ D R T ++V+ PG +L+
Sbjct: 123 IVPTGGPALQVSQICIQVSKHMGGVKVVMTTGGTNSGDDVLRLDD-TVHMVIAAPGRILN 181
Query: 209 LIRR 212
LI++
Sbjct: 182 LIKK 185
>CE27603 [A] KOG0922 DEAH-box RNA helicase
Length = 974
Score = 50.1 bits (118), Expect = 7e-06
Identities = 72/322 (22%), Positives = 124/322 (38%), Gaps = 38/322 (11%)
Query: 98 KFQKPSKIQ--EKALPLLIR--------DPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNV 147
KFQK K++ +K LP+ R +I +G GK+ +L V
Sbjct: 78 KFQKLQKLRKLQKELPIAERAGEIVELLKTNQVLIVAGDTGCGKSTQVPQYLLKAGFTGV 137
Query: 148 NSTQA---ICLSPARELARQTLEVIQEMGKFTKTSSQLVVPDSFERNKPITANIVVGTPG 204
TQ C + AR +A +TL + S++ FE K ++ T G
Sbjct: 138 ACTQPRRIACTALARRVAYETLN---------QYGSEVAFQIRFETTKSQKTKLLFLTEG 188
Query: 205 TVLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFD-D 263
+L + + L L V +LDE L +R +L+L SAT + D
Sbjct: 189 LLLRQMEKDSL-LEKYNVIILDEVHERHLTSDLLIGLLRDLCTKRDDLKLILMSATINLD 247
Query: 264 GVRQYAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYT---------ILSELYGL 314
+ Y + V L +V IKQ D + HK ++ + +
Sbjct: 248 LFKGYFEGAPVVQVPGRLFPIDVRWHPIKQFIDQSDKKTHKIDPEPYLKILELIDKQFPS 307
Query: 315 LTIGSSIIFVKTKQTANLLYAKLKK-----EGHQVSILHGDLQSQDRDRLIDDFREGRSK 369
G ++IF+ +++ LK G + +LH L +++D++ D G K
Sbjct: 308 TQRGDALIFLNGVAEISMVAEHLKNYAELTNGWIILMLHSTLSVEEQDKVFDQAPVGIRK 367
Query: 370 VLITTNVLARGIDIPSVSMVVN 391
+++TNV + I + V++
Sbjct: 368 CILSTNVAETSVTIDGIRFVID 389
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.133 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,178,785
Number of Sequences: 60738
Number of extensions: 869637
Number of successful extensions: 3354
Number of sequences better than 1.0e-05: 230
Number of HSP's better than 0.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 2519
Number of HSP's gapped (non-prelim): 266
length of query: 469
length of database: 30,389,216
effective HSP length: 110
effective length of query: 359
effective length of database: 23,708,036
effective search space: 8511184924
effective search space used: 8511184924
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)