ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI4292 good U KOG3330 Intracellular trafficking, secretion, and vesicular transport Transport protein particle (TRAPP) complex subunit
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI4292 1498019 1497396 -208
(208 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YKR068c [U] KOG3330 Transport protein particle (TRAPP) complex s... 312 2e-85
SPAC644.18c [U] KOG3330 Transport protein particle (TRAPP) compl... 214 5e-56
Hs7656926 [U] KOG3330 Transport protein particle (TRAPP) complex... 195 3e-50
At5g54750 [U] KOG3330 Transport protein particle (TRAPP) complex... 169 3e-42
7294941 [U] KOG3330 Transport protein particle (TRAPP) complex s... 140 1e-33
CE00368 [U] KOG3330 Transport protein particle (TRAPP) complex s... 120 1e-27
Hs20551744 [U] KOG3330 Transport protein particle (TRAPP) comple... 79 4e-15
>YKR068c [U] KOG3330 Transport protein particle (TRAPP) complex subunit
Length = 193
Score = 312 bits (800), Expect = 2e-85
Identities = 143/184 (77%), Positives = 170/184 (91%)
Query: 25 IKQIGETVWKNRTVKINAELFTLTYGSIVSQLCQDYQRDFKKVNDQLFSMGYNIGIRLIE 84
+K +GE +WKN+T KIN ELFTLTYGSIV+QLCQDY+RDF KVND L+SMGYNIG RLIE
Sbjct: 10 LKAMGEEIWKNKTEKINTELFTLTYGSIVAQLCQDYERDFNKVNDHLYSMGYNIGCRLIE 69
Query: 85 DFLARTAIPRCDNFVTTSEVISKCAFKIFLNITPHVTNWSNTKNSFSLIFDENPLSDFVE 144
DFLARTA+PRC+N V TSEV+SKCAFKIFLNITP++TNWS+ K++FSLI DENPL+DFVE
Sbjct: 70 DFLARTALPRCENLVKTSEVLSKCAFKIFLNITPNITNWSHNKDTFSLILDENPLADFVE 129
Query: 145 LPMDASKELWYSNILCGVLKGALEMVQLDCEVYFVSDVLRGNTQTELRVKLNKVLKDEMP 204
LPMDA K LWYSNILCGVLKG+LEMVQLDC+V+FVSD+LRG++QTE++VKLN++LKDE+P
Sbjct: 130 LPMDAMKSLWYSNILCGVLKGSLEMVQLDCDVWFVSDILRGDSQTEIKVKLNRILKDEIP 189
Query: 205 AGED 208
GED
Sbjct: 190 IGED 193
>SPAC644.18c [U] KOG3330 Transport protein particle (TRAPP) complex subunit
Length = 183
Score = 214 bits (546), Expect = 5e-56
Identities = 102/182 (56%), Positives = 144/182 (79%), Gaps = 3/182 (1%)
Query: 27 QIGETVWKNRTVKINAELFTLTYGSIVSQLCQDYQRDFKKVNDQLFSMGYNIGIRLIEDF 86
+IGE V+K + K+NAELF LTYGSIV+QLC+D +++KVN++L MGYNIGIRLIEDF
Sbjct: 5 KIGEDVYK-KVDKVNAELFVLTYGSIVAQLCKDM--NYEKVNEELDKMGYNIGIRLIEDF 61
Query: 87 LARTAIPRCDNFVTTSEVISKCAFKIFLNITPHVTNWSNTKNSFSLIFDENPLSDFVELP 146
LA+T PRC +F T E ++K FK+FLN +P +++ S+ N+F L D+NPL++FVELP
Sbjct: 62 LAKTEWPRCADFRETGETVAKVGFKVFLNFSPIISSVSDDGNTFVLTLDDNPLAEFVELP 121
Query: 147 MDASKELWYSNILCGVLKGALEMVQLDCEVYFVSDVLRGNTQTELRVKLNKVLKDEMPAG 206
DA ++LWYSNILCGV++GALEM+Q+D + F+ D+LRG+ TE+RV L ++LK+E+P G
Sbjct: 122 ADARQKLWYSNILCGVIRGALEMLQMDVDAVFLRDILRGDEHTEIRVHLKRILKEEIPPG 181
Query: 207 ED 208
++
Sbjct: 182 DE 183
>Hs7656926 [U] KOG3330 Transport protein particle (TRAPP) complex subunit
Length = 180
Score = 195 bits (496), Expect = 3e-50
Identities = 96/170 (56%), Positives = 131/170 (76%), Gaps = 2/170 (1%)
Query: 39 KINAELFTLTYGSIVSQLCQDYQRDFKKVNDQLFSMGYNIGIRLIEDFLARTAIPRCDNF 98
K+++ELFTLTYG++V+QLC+DY+ D + VN QL MG+NIG+RLIEDFLAR+ + RC +F
Sbjct: 13 KMSSELFTLTYGALVTQLCKDYEND-EDVNKQLDKMGFNIGVRLIEDFLARSNVGRCHDF 71
Query: 99 VTTSEVISKCAFKIFLNITPHVTNWSNTKNSFSLIFDENPLSDFVELPMDASKELWYSNI 158
T++VI+K AFK++L ITP +TNWS + FSLI + NPL DFVELP D L YSN+
Sbjct: 72 RETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELP-DNHSSLIYSNL 130
Query: 159 LCGVLKGALEMVQLDCEVYFVSDVLRGNTQTELRVKLNKVLKDEMPAGED 208
LCGVL+GALEMVQ+ E FV D L+G+ TE+R++ + ++D +PAGE+
Sbjct: 131 LCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLPAGEE 180
>At5g54750 [U] KOG3330 Transport protein particle (TRAPP) complex subunit
Length = 186
Score = 169 bits (427), Expect = 3e-42
Identities = 87/170 (51%), Positives = 122/170 (71%), Gaps = 2/170 (1%)
Query: 39 KINAELFTLTYGSIVSQLCQDYQRDFKKVNDQLFSMGYNIGIRLIEDFLARTAIPRCDNF 98
++NAELFTLTYG+IV QL D + + ++VN QL MGYNIGIRLI++FLA++ + RC +F
Sbjct: 18 RVNAELFTLTYGAIVRQLLTDLE-EVEEVNKQLDQMGYNIGIRLIDEFLAKSGVSRCVDF 76
Query: 99 VTTSEVISKCAFKIFLNITPHVTNWSNTKNSFSLIFDENPLSDFVELPMDASKELWYSNI 158
T+E+I+K FK+FL +T VT+W + S+I ++NPL DFVELP D + L+Y N+
Sbjct: 77 KETAEMIAKVGFKMFLGVTASVTSWDSDGTCCSIILEDNPLVDFVELP-DTCQGLYYCNV 135
Query: 159 LCGVLKGALEMVQLDCEVYFVSDVLRGNTQTELRVKLNKVLKDEMPAGED 208
L GV++GALEMV + EV + DVLRG+ EL+VKL K + +E P +D
Sbjct: 136 LSGVIRGALEMVSMKTEVTWTRDVLRGDDAYELQVKLLKQVAEEYPYKDD 185
>7294941 [U] KOG3330 Transport protein particle (TRAPP) complex subunit
Length = 143
Score = 140 bits (353), Expect = 1e-33
Identities = 79/150 (52%), Positives = 105/150 (69%), Gaps = 12/150 (8%)
Query: 62 RDFKK---VNDQLFSMGYNIGIRLIEDFLARTAIPRCDNFVTTSEVISKCAFKIFLNITP 118
RDF+ VN QL +GYN+G+RLIEDFLART+ PRC T++ I + AF+I+LNI P
Sbjct: 3 RDFENAEDVNKQLERIGYNMGMRLIEDFLARTSAPRCLEMRETADRIQQ-AFRIYLNIQP 61
Query: 119 HVTNWSNTKNSFSLIFDENPLSDFVELPMDASKELWYSNILCGVLKGALEMVQLDCEVYF 178
++NWS + FSL+FD NPL++FVELP D + L YS IL G ++GALEMVQL+
Sbjct: 62 TISNWSPASDEFSLVFDSNPLTEFVELPPDLT-NLRYSAILSGCIRGALEMVQLE----- 115
Query: 179 VSDVLRGNTQTELRVKLNKVLKDEMPAGED 208
D L+G+ TELRVK + L++ +PAGED
Sbjct: 116 --DQLKGDNVTELRVKFVRRLEEVIPAGED 143
>CE00368 [U] KOG3330 Transport protein particle (TRAPP) complex subunit
Length = 181
Score = 120 bits (302), Expect = 1e-27
Identities = 66/172 (38%), Positives = 110/172 (63%), Gaps = 7/172 (4%)
Query: 39 KINAELFTLTYGSIVSQLCQDYQRDFKKVNDQLFSMGYNIGIRLIEDFLARTA-IPRCDN 97
K++AELF LTYG++V+++ +DY+ D K V QL MG+N+G RL +DFLA+ A +PRC +
Sbjct: 14 KMSAELFCLTYGAMVTEMLKDYE-DPKDVTIQLDKMGFNMGTRLADDFLAKNANVPRCVD 72
Query: 98 FVTTSEVISKCAFKIFLNITPHVTNWSNTKNSFSLIFDENPLSDFVELPMD-ASKELWYS 156
++V+ + A +L I+ ++W++ F++ + NPL++ V++P S L YS
Sbjct: 73 TRQIADVLCRNAIPCYLGISATASSWTSGDREFTITLEANPLTELVQVPAHLVSAGLSYS 132
Query: 157 NILCGVLKGALEMVQLDCEVYFVSDVLRGNTQTELRVKLNKVLKDEMPAGED 208
++ G ++GALE V +VY + TE+R++ ++VLKD +PAGED
Sbjct: 133 QLIAGAIRGALEAVHF--KVY--ASATDTGANTEIRIRFDQVLKDSLPAGED 180
>Hs20551744 [U] KOG3330 Transport protein particle (TRAPP) complex subunit
Length = 97
Score = 79.0 bits (193), Expect = 4e-15
Identities = 39/86 (45%), Positives = 58/86 (67%)
Query: 112 IFLNITPHVTNWSNTKNSFSLIFDENPLSDFVELPMDASKELWYSNILCGVLKGALEMVQ 171
++L ITP VT +++KN FSLI ++NPL +FVE L Y N+LCG+++GALEMV
Sbjct: 1 MYLGITPSVTCNNSSKNEFSLILEKNPLVEFVEELPAGRSSLCYCNLLCGIIRGALEMVH 60
Query: 172 LDCEVYFVSDVLRGNTQTELRVKLNK 197
L +V F+ D L+G++ TE+ + K
Sbjct: 61 LAADVTFLQDRLKGDSVTEIGITFLK 86
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.321 0.137 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,565,262
Number of Sequences: 60738
Number of extensions: 405311
Number of successful extensions: 957
Number of sequences better than 1.0e-05: 7
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 939
Number of HSP's gapped (non-prelim): 7
length of query: 208
length of database: 30,389,216
effective HSP length: 102
effective length of query: 106
effective length of database: 24,193,940
effective search space: 2564557640
effective search space used: 2564557640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)