ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI4374 good B KOG1973 Chromatin structure and dynamics Chromatin remodeling protein, contains PHD Zn-finger
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI4374 1525986 1525318 -223
(223 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YOR064c [B] KOG1973 Chromatin remodeling protein contains PHD Zn... 118 6e-27
Hs9506659 [B] KOG1973 Chromatin remodeling protein contains PHD ... 77 1e-14
7293493 [B] KOG1973 Chromatin remodeling protein contains PHD Zn... 76 3e-14
Hs7705861 [B] KOG1973 Chromatin remodeling protein contains PHD ... 74 1e-13
Hs22061442 [B] KOG1973 Chromatin remodeling protein contains PHD... 74 1e-13
Hs19923771 [B] KOG1973 Chromatin remodeling protein contains PHD... 74 2e-13
7298057 [B] KOG1973 Chromatin remodeling protein contains PHD Zn... 74 2e-13
YNL097c [B] KOG1973 Chromatin remodeling protein contains PHD Zn... 72 5e-13
At3g24010 [B] KOG1973 Chromatin remodeling protein contains PHD ... 72 5e-13
Hs4504695 [B] KOG1973 Chromatin remodeling protein contains PHD ... 72 6e-13
7300308 [B] KOG1973 Chromatin remodeling protein contains PHD Zn... 71 1e-12
Hs18644730 [B] KOG1973 Chromatin remodeling protein contains PHD... 71 1e-12
SPBC1709.11c [B] KOG1973 Chromatin remodeling protein contains P... 70 3e-12
SPAC3G9.08 [B] KOG1973 Chromatin remodeling protein contains PHD... 69 5e-12
CE20286 [B] KOG1973 Chromatin remodeling protein contains PHD Zn... 65 6e-11
YHR090c [B] KOG1973 Chromatin remodeling protein contains PHD Zn... 64 1e-10
At1g54390 [B] KOG1973 Chromatin remodeling protein contains PHD ... 63 4e-10
CE29113 [B] KOG1973 Chromatin remodeling protein contains PHD Zn... 62 8e-10
CE19561 [B] KOG1973 Chromatin remodeling protein contains PHD Zn... 54 2e-07
ECU10g1090 [B] KOG1973 Chromatin remodeling protein contains PHD... 53 3e-07
>YOR064c [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 219
Score = 118 bits (296), Expect = 6e-27
Identities = 70/197 (35%), Positives = 100/197 (50%), Gaps = 18/197 (9%)
Query: 27 DVRYGFLSTLDHLPCDVIRTLWTIQSLDIGDTNRDGCHSE----EMLRQAQHLLELVRQE 82
D+RY FLSTLDHLPC++IR+L +Q++D+ D E ++L A ++ +LV +
Sbjct: 12 DIRYSFLSTLDHLPCELIRSLRLMQTIDLFKNEEDEPGMERACRDLLLVATYINDLVDDQ 71
Query: 83 HSRLNFEKQELERFSQIKARYDSXXXXXXXXXXXXXXXXXXXXXTMKS----RYPEAERE 138
L K+ELE + ++S + + ER+
Sbjct: 72 IHFLKQHKKELEIQKSVTKNFNSSLENIKSKLTLEEPGAYKEPKLLLKINLKKAKSRERK 131
Query: 139 QKL------IQQEHVNHDKTHKPETETYCFCRDVSYGPMVACDNESCAIEWFHYPCVGLS 192
+ + I Q V + + E YCFCR+VSYGPMVACDN +C EWFHY CVGL
Sbjct: 132 ESITSPTIGINQGDVTEGNNN--QEEVYCFCRNVSYGPMVACDNPACPFEWFHYGCVGLK 189
Query: 193 AAPKPNEKWFCSDMCRK 209
APK KW+CS C++
Sbjct: 190 QAPK--GKWYCSKDCKE 204
>Hs9506659 [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 418
Score = 77.4 bits (189), Expect = 1e-14
Identities = 32/54 (59%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Query: 150 DKTHKPETETYCFCRDVSYGPMVACDNESCAIEWFHYPCVGLSAAPKPNEKWFC 203
D T+ P YC C VSYG MV CDN+ C IEWFHY CVGL+ APK KW+C
Sbjct: 352 DWTYDPNEPRYCICNQVSYGEMVGCDNQDCPIEWFHYGCVGLTEAPK--GKWYC 403
>7293493 [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 686
Score = 76.3 bits (186), Expect = 3e-14
Identities = 31/66 (46%), Positives = 42/66 (62%), Gaps = 2/66 (3%)
Query: 138 EQKLIQQEHVNHDKTHKPETETYCFCRDVSYGPMVACDNESCAIEWFHYPCVGLSAAPKP 197
E L+ ++ + ++ P YC C VSYG MVACDN++C EWFHYPCVG++ PK
Sbjct: 608 ENGLVVEQTNEGEWSYDPNEPRYCTCNQVSYGDMVACDNDACPYEWFHYPCVGITQPPK- 666
Query: 198 NEKWFC 203
KW+C
Sbjct: 667 -GKWYC 671
>Hs7705861 [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 249
Score = 74.3 bits (181), Expect = 1e-13
Identities = 29/49 (59%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Query: 155 PETETYCFCRDVSYGPMVACDNESCAIEWFHYPCVGLSAAPKPNEKWFC 203
P TYC C VSYG M+ CDN C+IEWFH+ CVGL+ KP KWFC
Sbjct: 193 PNEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTT--KPRGKWFC 239
>Hs22061442 [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 248
Score = 74.3 bits (181), Expect = 1e-13
Identities = 29/49 (59%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Query: 155 PETETYCFCRDVSYGPMVACDNESCAIEWFHYPCVGLSAAPKPNEKWFC 203
P TYC C VSYG M+ CDN C+IEWFH+ CVGL+ KP KWFC
Sbjct: 192 PNEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTT--KPRGKWFC 238
>Hs19923771 [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 422
Score = 73.6 bits (179), Expect = 2e-13
Identities = 31/68 (45%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 136 EREQKLIQQEHVNHDKTHKPETETYCFCRDVSYGPMVACDNESCAIEWFHYPCVGLSAAP 195
+R + ++E D P TYC C VSYG M+ CDN+ C IEWFH+ CVGL+
Sbjct: 331 KRSKAKAEREASPADLPIDPNEPTYCLCNQVSYGEMIGCDNDECPIEWFHFSCVGLN--H 388
Query: 196 KPNEKWFC 203
KP KW+C
Sbjct: 389 KPKGKWYC 396
>7298057 [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 328
Score = 73.6 bits (179), Expect = 2e-13
Identities = 29/49 (59%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 155 PETETYCFCRDVSYGPMVACDNESCAIEWFHYPCVGLSAAPKPNEKWFC 203
P TYC C VSYG M+ CDN C IEWFH+ CVGL+ KP KWFC
Sbjct: 272 PNEPTYCLCHQVSYGEMIGCDNPDCPIEWFHFACVGLTT--KPKGKWFC 318
>YNL097c [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 330
Score = 72.4 bits (176), Expect = 5e-13
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 8/68 (11%)
Query: 148 NHDKTHKPETETY-----CFCRDVSYGPMVACDNESCAIEWFHYPCVGLSAAPKPNEKWF 202
N+ + +P+T Y C+C V+YG MV CD C +EWFH PC+GL PK KW+
Sbjct: 265 NNSRISRPKTNDYGEPLYCYCNQVAYGEMVGCDGADCELEWFHLPCIGLETLPK--GKWY 322
Query: 203 CSDMCRKQ 210
C D C+K+
Sbjct: 323 CDD-CKKK 329
>At3g24010 [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 221
Score = 72.4 bits (176), Expect = 5e-13
Identities = 29/51 (56%), Positives = 34/51 (65%), Gaps = 2/51 (3%)
Query: 155 PETETYCFCRDVSYGPMVACDNESCAIEWFHYPCVGLSAAPKPNEKWFCSD 205
P TYC C VS+G MVACDN +C IEWFH+ CVGL PK KW+C +
Sbjct: 162 PNEPTYCICNQVSFGEMVACDNNACKIEWFHFGCVGLKEQPK--GKWYCPE 210
>Hs4504695 [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 280
Score = 72.0 bits (175), Expect = 6e-13
Identities = 32/76 (42%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 129 KSRYPEAEREQKLIQQEHVNH-DKTHKPETETYCFCRDVSYGPMVACDNESCAIEWFHYP 187
KS+ + ++ K Q+ + + P TYC C VSYG M+ CDNE C IEWFH+
Sbjct: 182 KSKSAKKKKRSKAKQEREASPVEFAIDPNEPTYCLCNQVSYGEMIGCDNEQCPIEWFHFS 241
Query: 188 CVGLSAAPKPNEKWFC 203
CV L+ KP KW+C
Sbjct: 242 CVSLTY--KPKGKWYC 255
>7300308 [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 433
Score = 71.2 bits (173), Expect = 1e-12
Identities = 31/70 (44%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 144 QEHVNHDKTHKPETETYCFCRDVSYGPMVACDNESCAIEWFHYPCVGLSAAPKPNEKWFC 203
+E +T P+ TYC C +S+G M+ CDN+ C IEWFH+ CV L KP KWFC
Sbjct: 344 REETPPPETIDPDEPTYCVCNQISFGEMILCDNDLCPIEWFHFSCVSL--VLKPKGKWFC 401
Query: 204 SDMCRKQYSN 213
+ CR + N
Sbjct: 402 PN-CRGERPN 410
>Hs18644730 [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 240
Score = 70.9 bits (172), Expect = 1e-12
Identities = 28/49 (57%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 155 PETETYCFCRDVSYGPMVACDNESCAIEWFHYPCVGLSAAPKPNEKWFC 203
P TYC C VSYG M+ CDN C IEWFH+ CV L+ KP KWFC
Sbjct: 183 PNEPTYCLCHQVSYGEMIGCDNPDCPIEWFHFACVDLTT--KPKGKWFC 229
>SPBC1709.11c [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 305
Score = 69.7 bits (169), Expect = 3e-12
Identities = 27/67 (40%), Positives = 41/67 (60%), Gaps = 2/67 (2%)
Query: 139 QKLIQQEHVNHDKTHKPETETYCFCRDVSYGPMVACDNESCAIEWFHYPCVGLSAAPKPN 198
+ L++ + ++ + + YC+C+ VSYG M+ CDNE+C EWFH PCVGL PK
Sbjct: 229 EPLVKHDTLDSSDISREGEQLYCYCQQVSYGQMIGCDNENCKREWFHLPCVGLVEPPK-- 286
Query: 199 EKWFCSD 205
W+C +
Sbjct: 287 GIWYCKE 293
>SPAC3G9.08 [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 283
Score = 68.9 bits (167), Expect = 5e-12
Identities = 30/55 (54%), Positives = 36/55 (64%), Gaps = 3/55 (5%)
Query: 156 ETETYCFCRDVSYGPMVACDNESCAIEWFHYPCVGLSAAPKPNEKWFCSDMCRKQ 210
+ E YCFC+ SYG MVACDN +C EWFH CVGL A P+ W+C + CR Q
Sbjct: 226 DNEKYCFCQQGSYGQMVACDNANCEREWFHMECVGLKAPPEGT--WYC-EACRDQ 277
>CE20286 [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 490
Score = 65.5 bits (158), Expect = 6e-11
Identities = 23/44 (52%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 160 YCFCRDVSYGPMVACDNESCAIEWFHYPCVGLSAAPKPNEKWFC 203
+CFC + SYG MV CDN C + WFHYPC+G+ P KW+C
Sbjct: 430 WCFCNEKSYGDMVQCDNRHCTLRWFHYPCIGM--VEPPTGKWYC 471
>YHR090c [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 282
Score = 64.3 bits (155), Expect = 1e-10
Identities = 29/61 (47%), Positives = 35/61 (56%), Gaps = 8/61 (13%)
Query: 145 EHVNHDKTHKPETETYCFCRDVSYGPMVACDNESCAIEWFHYPCVGLSAAPKPNEKWFCS 204
E+ DKT YCFC+ VS+G MVACD +C EWFHY CV L PK W+C
Sbjct: 215 ENEEEDKT------LYCFCQRVSFGEMVACDGPNCKYEWFHYDCVNLKEPPKGT--WYCP 266
Query: 205 D 205
+
Sbjct: 267 E 267
>At1g54390 [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 270
Score = 62.8 bits (151), Expect = 4e-10
Identities = 26/48 (54%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 155 PETETYCFCRDVSYGPMVACDNESC-AIEWFHYPCVGLSAAPKPNEKW 201
P TYC C VS+G M+ACDNE+C EWFHY CVGL+ + KW
Sbjct: 189 PNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYTCVGLTPETRFKGKW 236
>CE29113 [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 485
Score = 61.6 bits (148), Expect = 8e-10
Identities = 27/61 (44%), Positives = 42/61 (68%), Gaps = 5/61 (8%)
Query: 148 NHDKTHK-PETETYCFCR--DVSYGPMVACDNESCAIEWFHYPCVGLSAAPKPNEKWFCS 204
N ++T K E E +C C +++ G MV C+N++C I+WFH+ CVGL AAP ++W+C+
Sbjct: 422 NRERTKKYREQEEWCICNGMNINSGMMVECENKNCPIKWFHFECVGLLAAPL--DEWYCT 479
Query: 205 D 205
D
Sbjct: 480 D 480
>CE19561 [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 247
Score = 53.5 bits (127), Expect = 2e-07
Identities = 23/67 (34%), Positives = 35/67 (51%), Gaps = 12/67 (17%)
Query: 154 KPETET----------YCFCRDVSYGPMVACDNESCAIEWFHYPCVGLSAAPKPNEKWFC 203
KPE+E YC+C+ M+ C+N C WFH+ C+G+ AP + W+C
Sbjct: 161 KPESEKAVAAAEPPKMYCWCQLDKNDTMIECENPGCKYGWFHFTCIGMITAPAGD--WYC 218
Query: 204 SDMCRKQ 210
++ CR Q
Sbjct: 219 TNECRAQ 225
>ECU10g1090 [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 183
Score = 53.1 bits (126), Expect = 3e-07
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 160 YCFCRDVSYGPMVACDNESCAIEWFHYPCVGLSAAPKPNEKWFCSDMCRK 209
YC C ++ M+ACD+ C EWFH+ CVG+S PK + W C + C+K
Sbjct: 131 YCKCNRPAFKSMIACDSLDCKREWFHFECVGISGPPKMS--WTCPE-CKK 177
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.320 0.134 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,495,891
Number of Sequences: 60738
Number of extensions: 480692
Number of successful extensions: 1307
Number of sequences better than 1.0e-05: 20
Number of HSP's better than 0.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1277
Number of HSP's gapped (non-prelim): 23
length of query: 223
length of database: 30,389,216
effective HSP length: 102
effective length of query: 121
effective length of database: 24,193,940
effective search space: 2927466740
effective search space used: 2927466740
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)