ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI4452 good A KOG3068 RNA processing and modification mRNA splicing factor
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI4452 1551236 1550526 -237
(237 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YJR050w [A] KOG3068 mRNA splicing factor 172 4e-43
Hs20149304 [A] KOG3068 mRNA splicing factor 86 3e-17
CE05922 [A] KOG3068 mRNA splicing factor 77 3e-14
At3g18790 [A] KOG3068 mRNA splicing factor 73 3e-13
SPBC32F12.05c [A] KOG3068 mRNA splicing factor 65 6e-11
7298990 [A] KOG3068 mRNA splicing factor 57 3e-08
>YJR050w [A] KOG3068 mRNA splicing factor
Length = 235
Score = 172 bits (436), Expect = 4e-43
Identities = 101/245 (41%), Positives = 138/245 (56%), Gaps = 18/245 (7%)
Query: 1 MSRNVNKANSVLVRYQELQAAETGGYQDFSRLKRPTRINKVTKLDEALRWRNELVKEIGQ 60
MSRNV+KANSVLVR+QE QA GGY+D+SR +RP ++KV + EA W+ ++ KEI Q
Sbjct: 1 MSRNVDKANSVLVRFQEQQAESAGGYKDYSRYQRPRNVSKVKSIKEANEWKRQVSKEIKQ 60
Query: 61 RVTQIHDPSLNESQITEINDELNKLFQEKGRWDFHIRNKLKGPDLKKRK----QLNTTGG 116
+ T+I+DPSLNE QI E+NDELN LF+E RW +HI + L K+++ + G
Sbjct: 61 KSTRIYDPSLNEMQIAELNDELNNLFKEWKRWQWHIDHTLMEKKTKRKRLEDSHVLMNSG 120
Query: 117 TLIDGKRYFGRALELPEVQXXXXXXXXXXXXXXXXXXXXXXLQRKIKRWESTLKDDYFVG 176
LI+GKRYFGRALELPEV+ K D Y+ G
Sbjct: 121 KLINGKRYFGRALELPEVKEWLKQSQRQNDGGSI----------NTKCIPKDRNDFYYHG 170
Query: 177 NNSDELLEYEKKRTGSLRS----TIHSSDRDPSFVIPNFDVPSLKDVELWLVQRRKNELK 232
+ L E+E T L++ ++ + + S VP+L D+E WLVQRRK +L
Sbjct: 171 KVTAALTEFEANWTSILKAHYNVPVNEDEEEMSRQTQEIHVPTLADMEHWLVQRRKKKLM 230
Query: 233 KQLGL 237
+L L
Sbjct: 231 DELNL 235
>Hs20149304 [A] KOG3068 mRNA splicing factor
Length = 285
Score = 86.3 bits (212), Expect = 3e-17
Identities = 52/139 (37%), Positives = 84/139 (60%), Gaps = 10/139 (7%)
Query: 1 MSRNVNKANSVLVRYQELQAAETGGYQDFSRLKRPTRINKVTKLDEALRWRNELVKEIGQ 60
M+RN KA + L R+++ Q E G ++ +RP ++ T+L +A +WR +++ EI +
Sbjct: 1 MARNAEKAMTALARFRQAQLEE-GKVKE----RRPFLASECTELPKAEKWRRQIIGEISK 55
Query: 61 RVTQIHDPSLNESQITEINDELNKLFQEKGRWDFHIRNKLKGPDLKK--RKQLNTTGGTL 118
+V QI + L E +I ++NDE+NKL +EKG W+ I+ +L GPD K K L+ G +
Sbjct: 56 KVAQIQNAGLGEFRIRDLNDEINKLLREKGHWEVRIK-ELGGPDYGKVGPKMLDHEGKEV 114
Query: 119 ID--GKRYFGRALELPEVQ 135
G +YFG A +LP V+
Sbjct: 115 PGNRGYKYFGAAKDLPGVR 133
>CE05922 [A] KOG3068 mRNA splicing factor
Length = 267
Score = 76.6 bits (187), Expect = 3e-14
Identities = 46/139 (33%), Positives = 80/139 (57%), Gaps = 9/139 (6%)
Query: 1 MSRNVNKANSVLVRYQELQAAETGGYQDFSRLKRPTRINKVTKLDEALRWRNELVKEIGQ 60
M+RN KA + L R++ ++ E G +RP + L +A R+R E+V++ +
Sbjct: 1 MARNAEKAMTALARWRRMKEEEERG----PIARRPHDVKDCRNLSDAERFRREIVRDASK 56
Query: 61 RVTQIHDPSLNESQITEINDELNKLFQEKGRWDFHIRNKLKGPDLKK--RKQLNTTGGTL 118
++T I +P L E ++ ++NDE+N+L + K W+ IR +L G D +K +K+L+ G
Sbjct: 57 KITAIQNPGLGEFKLRDLNDEVNRLIKLKHAWEQRIR-ELGGTDYRKYAQKELDAIGRET 115
Query: 119 ID--GKRYFGRALELPEVQ 135
+ G +YFG A +LP V+
Sbjct: 116 GNSRGYKYFGAAKDLPGVR 134
>At3g18790 [A] KOG3068 mRNA splicing factor
Length = 300
Score = 73.2 bits (178), Expect = 3e-13
Identities = 47/145 (32%), Positives = 80/145 (54%), Gaps = 15/145 (10%)
Query: 1 MSRNVNKANSVLVRYQELQAAETGGYQDFSRLKRPTRINKVTKLDEALRWRNELVKEIGQ 60
M+RN KA S+L R+ + +E ++ +RP ++ L EA +WR ++++EIG
Sbjct: 1 MARNEEKAQSMLNRFITQKESEKKKPKE----RRPYLASECRDLAEADKWRQQILREIGS 56
Query: 61 RVTQIHDPSLNESQITEINDELNKLFQEKGRWDFHIRNKLKGPDLKKRK-QLNTTGGTLI 119
+V +I + L E ++ ++NDE+NKL +E+ W+ I +L G + K ++ G +I
Sbjct: 57 KVAEIQNEGLGEHRLRDLNDEINKLLRERYHWERRI-VELGGHNYSKHSAKMTDLEGNII 115
Query: 120 D---------GKRYFGRALELPEVQ 135
D G RYFG A +LP V+
Sbjct: 116 DVPNPSGRGPGYRYFGAAKKLPGVR 140
>SPBC32F12.05c [A] KOG3068 mRNA splicing factor
Length = 217
Score = 65.5 bits (158), Expect = 6e-11
Identities = 60/214 (28%), Positives = 100/214 (46%), Gaps = 23/214 (10%)
Query: 33 KRPTRINKVTKLDEALRWRNELVKEIGQRVTQIHDPSLNESQITEINDELNKLFQEKGRW 92
KRP I + + + R +VK+I +++++I +L E QI ++ND +N+L +EK W
Sbjct: 15 KRPKDIKSIKSVPICEKHRASVVKDISRKISRIQSATLPEYQIRDLNDAINRLMREKHEW 74
Query: 93 DFHIRNKLKGPD--LKKRKQLNTTGGTL--IDGKRYFGRALELPEVQXXXXXXXXXXXXX 148
+ IR+ L G + K K G + ID RY+GRA ELP V+
Sbjct: 75 EVQIRD-LGGINYLYNKAKLFEDEGEQISDIDDYRYYGRARELPGVKELFEADMSFIPER 133
Query: 149 XXXXXXXXXLQRKIKRWESTLKDDYF--VGNNSDELLE-----YEKKRTGSLRSTIHSSD 201
QRK + + L YF + + LLE E+++ L + +
Sbjct: 134 ----------QRKQEMQKRRLDAWYFGYIPPAQESLLEDFEAKIEEQQHKHLENLGDEVE 183
Query: 202 RDPSFVIPNFDVPSLKDVELWLVQRRKNELKKQL 235
+D ++ +P+ DVE L++RRKN L ++
Sbjct: 184 QDWKPLVIE-QIPTRDDVEAILLERRKNALLSRI 216
>7298990 [A] KOG3068 mRNA splicing factor
Length = 274
Score = 56.6 bits (135), Expect = 3e-08
Identities = 39/137 (28%), Positives = 73/137 (52%), Gaps = 14/137 (10%)
Query: 7 KANSVLVRYQELQAAETGGYQDFSRLKRPTRINKVTKLDEALRWRNELVKEIGQRVTQIH 66
+ + L R++ + E+G + +RP ++ L ++R E++++I ++V QI
Sbjct: 5 QCKTTLARWRAAKEVESG-----EKERRPYLASECHDLPRCEKFRLEIIRDISKKVAQIQ 59
Query: 67 DPS----LNESQITEINDELNKLFQEKGRWDFHIRNKLKGPDLKK--RKQLNTTGGTLID 120
+ + L E +I ++NDE+NKL +EK W+ I + L GP ++ K + G +
Sbjct: 60 NGTYFAGLGEFRIRDLNDEINKLLREKRHWENQI-SSLGGPHYRRYGPKMFDAEGREVPG 118
Query: 121 --GKRYFGRALELPEVQ 135
G +YFG A +LP V+
Sbjct: 119 NRGYKYFGAAKDLPGVR 135
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.315 0.135 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,198,717
Number of Sequences: 60738
Number of extensions: 509934
Number of successful extensions: 1138
Number of sequences better than 1.0e-05: 6
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1122
Number of HSP's gapped (non-prelim): 11
length of query: 237
length of database: 30,389,216
effective HSP length: 103
effective length of query: 134
effective length of database: 24,133,202
effective search space: 3233849068
effective search space used: 3233849068
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)