ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI4544 suspect: LH R KOG2006 General function prediction only WD40 repeat protein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI4544 1579097 1582108 1004
(1004 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YLR039c [R] KOG2006 WD40 repeat protein 629 e-180
>YLR039c [R] KOG2006 WD40 repeat protein
Length = 1056
Score = 629 bits (1622), Expect = e-180
Identities = 357/1043 (34%), Positives = 583/1043 (55%), Gaps = 74/1043 (7%)
Query: 4 PVKPPQSFQLPGRCIE-----GIDE-DIIQTIEAPNSNHFLFITKTRLFVYQAKPFAPLA 57
PV PPQ ++P R E ID+ +I+Q++ P +N + +T TR+ +Y KP A +A
Sbjct: 41 PVSPPQLLRIPPRNAELGEGTKIDDCNILQSMTLPQANVLIMLTPTRVLIYNFKPMALVA 100
Query: 58 CHERTAESIELFGVNFGIRDNLPLGTEVKGFLTGQFCDPVI--DDKRFYYVITKNNFLLV 115
HERT S++ FG N ++ + P ++G ++ + ++ K +YV+T NFLL
Sbjct: 101 SHERTMASLKEFGDNRSMKRSAPYNDIIEGLISKKDSQYLLWHQGKLIFYVMTDKNFLLT 160
Query: 116 YELYTKTSENSVFKEYGIPLNLP---SDDSLLHRALDDDMDDEVLTVFSAKENHKVIQNG 172
Y++ + +FKEYGIP+ P S++ D + DD+ LTVF + ++IQNG
Sbjct: 161 YQILKNCTNEIIFKEYGIPVIEPLLMSEEEANSAEYDYNNDDDTLTVFDKNSSSRIIQNG 220
Query: 173 YTISKQKGFLQFMKNDDIAEELPIRRTELKLNVVLKFDHQIFDVIGIITHDIERTEHANQ 232
+ I+K+KGFL F+ N + +ELP+++ EL+L VVLKFD++I D+IGI T +
Sbjct: 221 FGITKEKGFLHFLSNQENIDELPVKKLELRLKVVLKFDYEIIDMIGIKTFSKVGDGRYEE 280
Query: 233 YLLVLFEHGLQVLKLEDFKLIDNKLIHVINGKKLIYCAGEILVLSYDEQQLSLEHILFDQ 292
L+VLF HGLQ+L + DFK+ + L+ V G K I C +++VLS+D + + D
Sbjct: 281 VLIVLFPHGLQILTISDFKVSKSSLVEVKKGSKTIVCNKQLMVLSHDSVEKQTIVSIIDI 340
Query: 293 ENVKSQNIALKG-PSGVFKDLVMFDHLLVVAFEKCTIYYDVFDKILVSEYPAITHVSCIS 351
E + I L P + L + +L+VV EK + K+ S P C
Sbjct: 341 EKQAVEAIPLTDTPDELLTCLEVNGYLVVVYKEKIICFDTRIKKVSHSWKPPFVIKLC-D 399
Query: 352 AISPDTMVLLTENN-SVIFMSKWGNILLSIPIDE--------------------SQFKIL 390
I+ ++L++E++ ++ F +++GN+L + DE +++KI
Sbjct: 400 KINDKILLLVSEDSVNIHFYTEFGNLLFATYFDEDDYNGDNNNDNSKDKNEKKAAEYKIS 459
Query: 391 HCSLIDTKLLISGSNGTLQLWDLWKKLDSSLSNFRTSQVFTLLNDNNDILLYSPM-SDST 449
+D L+ +G Q+W LW+++ + +FR + + L N NND+++YSP+ S S
Sbjct: 460 DFVCLDKSLITVSHSGKYQVWKLWEEIKQTQFDFRNPKCYVLTNTNNDVIIYSPVTSSSI 519
Query: 450 NTSTFQTIKLPTKTVNNNISTCKTNGILTLMAVYVGNKDILLINFLNSNTWISFDQMNIK 509
N Q IKLPTKT NN+I+ K N L L A YV NK+ILLI+ L +N W SF N+
Sbjct: 520 NNDNLQVIKLPTKTFNNHIAFVKINSSLRLFATYVSNKNILLIHNLETNMWSSFADQNVL 579
Query: 510 NIDWLGDDYLLCHVTDEDSDKEMVKCYHFPLLN-DGSTNLEDFKTWEWEVPQGYQLDNFY 568
++ WLGD+YL+CH+ ++D + KC PL + L D+ WE+ VP+ + + +
Sbjct: 580 DLHWLGDNYLVCHMKNDDGSTNL-KCLQIPLQEANPDVELSDYVMWEYNVPENTIVFSLH 638
Query: 569 ANTLSTYKMLKFTDEREDRDDASKKVFVTSEILMVLSNSHMIIFDALSSVHPTGVNMVQK 628
NTLS YK+LK + + + + + +++++++ I+FD +S+VHP G+N+++K
Sbjct: 639 VNTLSRYKLLKMKSKNHNASEKQPDALLKTAEIILVTDTQTIVFDVISTVHPCGLNIIKK 698
Query: 629 FHQYAEYNFPENSL-RGLKWIYRYKEGFIAWIRDQLVIIGQQEDKQWRFQVAYDRVEQIL 687
F+QY + N P + L ++WI KEG + + + + +G+ + W+ D +E+I+
Sbjct: 699 FYQYLKINIPIDVLPNKIEWIINMKEGLLFFADRKFIKLGKVDGGGWQTLTLLDNIEKII 758
Query: 688 EIYEDNLVLLSGNEVLLYDFAHIWTVDDPLITTPVIEEEYPISISLDTATLHNISCITTQ 747
++ D + ++ G+ ++Y +W PL++ P+ E+ YPIS + +TAT H + CI
Sbjct: 759 DVIRDEIFVVQGHNYVVYSLEDLWDDKKPLVSIPIEEDLYPISTTPETATTHTLHCIFNA 818
Query: 748 KLTKLSISHGVYLDKIVDRNLTLGVEGDKIDEKYHDLKHYKFCLEKILSSKVLEHEDLNS 807
+ +KL + H +YLD+++ L + + I Y LK YKF LEKILS+K+L + L+
Sbjct: 819 RFSKLVVKHQIYLDQLILAKLEDNTDLEDISHNYRFLKPYKFALEKILSTKILRSDSLDD 878
Query: 808 ILSLIDTYD----KNSGGIKNEVGKLEIVGNCLRKIETKHWDYLFENLKLTPRDLITKCI 863
IL LI YD +++ G LEI+ NCLRKIETK+W++LF NLK+TPRDL+ CI
Sbjct: 879 ILKLIKMYDNTDPEHNISPPTHSGMLEIISNCLRKIETKYWNHLFTNLKMTPRDLLALCI 938
Query: 864 ALSEAKILGTLLMVFLNYDE----GDSESKQEEVTTKSTXXXXXXXXXXXXXXXXXXXXX 919
+EAK+LG LL+VFLNYDE D K+ ++ T+ +
Sbjct: 939 EENEAKMLGVLLLVFLNYDEKDLGDDLHFKKSDLGTEES--------------------- 977
Query: 920 EKSHTNGLKESDSRETSPDTSVSTILKDETVIGQVLKIFVSTATLSTTKEQAQEYWDFAL 979
+ + N K+S+ SV+ +LKDE ++ +VL++ V++A +T +A + WD
Sbjct: 978 KALNDNSTKKSEK-------SVTNLLKDEELMLKVLELLVTSAANATDPIKATDSWDMCF 1030
Query: 980 QLIRFLRALDSKGNTTLAQTCLD 1002
QLIR L+ LD + NT L Q L+
Sbjct: 1031 QLIRLLKELDRENNTQLVQKALE 1053
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.320 0.138 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,094,799
Number of Sequences: 60738
Number of extensions: 2671579
Number of successful extensions: 6775
Number of sequences better than 1.0e-05: 1
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6764
Number of HSP's gapped (non-prelim): 1
length of query: 1004
length of database: 30,389,216
effective HSP length: 116
effective length of query: 888
effective length of database: 23,343,608
effective search space: 20729123904
effective search space used: 20729123904
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)