ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI4547 good C KOG3057 Energy production and conversion Cytochrome c oxidase, subunit VIb/COX12
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI4547 1582850 1583095 82
(82 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YLR038c [C] KOG3057 Cytochrome c oxidase subunit VIb/COX12 165 9e-42
SPCC1442.08c [C] KOG3057 Cytochrome c oxidase subunit VIb/COX12 110 3e-25
7293644 [C] KOG3057 Cytochrome c oxidase subunit VIb/COX12 105 8e-24
Hs4502985 [C] KOG3057 Cytochrome c oxidase subunit VIb/COX12 99 8e-22
At1g22450 [C] KOG3057 Cytochrome c oxidase subunit VIb/COX12 92 2e-19
At4g28060 [C] KOG3057 Cytochrome c oxidase subunit VIb/COX12 82 2e-16
CE22939 [C] KOG3057 Cytochrome c oxidase subunit VIb/COX12 74 4e-14
At1g32710 [C] KOG3057 Cytochrome c oxidase subunit VIb/COX12 50 4e-07
>YLR038c [C] KOG3057 Cytochrome c oxidase subunit VIb/COX12
Length = 83
Score = 165 bits (418), Expect = 9e-42
Identities = 67/81 (82%), Positives = 76/81 (93%)
Query: 1 MAENQESPLHTVGFDARFPNQNQTKHCWQSYVDYHKCINAKGEDFAPCKVFWKTYSSLCP 60
MA+ + SPLHTVGFDARFP QNQTKHCWQSYVDYHKC+N KGEDFAPCKVFWKTY++LCP
Sbjct: 1 MADQENSPLHTVGFDARFPQQNQTKHCWQSYVDYHKCVNMKGEDFAPCKVFWKTYNALCP 60
Query: 61 VDWVEKWDEQRSQGIFAGDIN 81
+DW+EKWD+QR +GIFAGDIN
Sbjct: 61 LDWIEKWDDQREKGIFAGDIN 81
>SPCC1442.08c [C] KOG3057 Cytochrome c oxidase subunit VIb/COX12
Length = 83
Score = 110 bits (276), Expect = 3e-25
Identities = 44/64 (68%), Positives = 50/64 (77%)
Query: 17 RFPNQNQTKHCWQSYVDYHKCINAKGEDFAPCKVFWKTYSSLCPVDWVEKWDEQRSQGIF 76
RFPN NQTKHC+QSY+DY +CI AKGEDF PCK FW Y SLCP++WVE+WDEQR G F
Sbjct: 20 RFPNTNQTKHCFQSYIDYFRCIKAKGEDFVPCKQFWHAYQSLCPMEWVERWDEQRENGTF 79
Query: 77 AGDI 80
I
Sbjct: 80 PAPI 83
>7293644 [C] KOG3057 Cytochrome c oxidase subunit VIb/COX12
Length = 92
Score = 105 bits (263), Expect = 8e-24
Identities = 43/72 (59%), Positives = 52/72 (71%)
Query: 9 LHTVGFDARFPNQNQTKHCWQSYVDYHKCINAKGEDFAPCKVFWKTYSSLCPVDWVEKWD 68
L T FD RFPNQN T++C+QSY+D+H+C +GEDFAPC F K Y S+CP WVEKWD
Sbjct: 21 LETAPFDPRFPNQNVTRYCYQSYIDFHRCQKKRGEDFAPCNYFQKVYKSMCPNAWVEKWD 80
Query: 69 EQRSQGIFAGDI 80
+QR G F G I
Sbjct: 81 DQRESGTFPGRI 92
>Hs4502985 [C] KOG3057 Cytochrome c oxidase subunit VIb/COX12
Length = 86
Score = 99.4 bits (246), Expect = 8e-22
Identities = 43/86 (50%), Positives = 60/86 (69%), Gaps = 6/86 (6%)
Query: 1 MAENQESPLH---TVGFDARFPNQNQTKHCWQSYVDYHKC---INAKGEDFAPCKVFWKT 54
MAE+ E+ + T FD+RFPNQNQT++CWQ+Y+D+H+C + AKG D + C+ + +
Sbjct: 1 MAEDMETKIKNYKTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTAKGGDISVCEWYQRV 60
Query: 55 YSSLCPVDWVEKWDEQRSQGIFAGDI 80
Y SLCP WV WDEQR++G F G I
Sbjct: 61 YQSLCPTSWVTDWDEQRAEGTFPGKI 86
>At1g22450 [C] KOG3057 Cytochrome c oxidase subunit VIb/COX12
Length = 191
Score = 91.7 bits (226), Expect = 2e-19
Identities = 38/75 (50%), Positives = 49/75 (64%)
Query: 6 ESPLHTVGFDARFPNQNQTKHCWQSYVDYHKCINAKGEDFAPCKVFWKTYSSLCPVDWVE 65
E L T D RFP NQT+HC+ YV+YH+C+ AKG+D C F K Y SLCP +WV+
Sbjct: 116 EIKLETAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGDDAPECDKFAKFYRSLCPSEWVD 175
Query: 66 KWDEQRSQGIFAGDI 80
+W+EQR G F G +
Sbjct: 176 RWNEQRENGTFPGPL 190
>At4g28060 [C] KOG3057 Cytochrome c oxidase subunit VIb/COX12
Length = 164
Score = 81.6 bits (200), Expect = 2e-16
Identities = 36/78 (46%), Positives = 48/78 (61%), Gaps = 6/78 (7%)
Query: 9 LHTVGFDARFPNQNQTKHCWQSYVDYHK------CINAKGEDFAPCKVFWKTYSSLCPVD 62
L T D RFP NQT+HC+ Y+++H+ C AKGED C+ F K Y +LCP +
Sbjct: 87 LKTAPADFRFPTTNQTRHCFTRYIEFHRYSCVIECTTAKGEDANECERFAKYYRALCPGE 146
Query: 63 WVEKWDEQRSQGIFAGDI 80
WV+KW+EQR G F G +
Sbjct: 147 WVDKWNEQRETGTFPGPL 164
>CE22939 [C] KOG3057 Cytochrome c oxidase subunit VIb/COX12
Length = 121
Score = 73.9 bits (180), Expect = 4e-14
Identities = 28/63 (44%), Positives = 38/63 (59%)
Query: 14 FDARFPNQNQTKHCWQSYVDYHKCINAKGEDFAPCKVFWKTYSSLCPVDWVEKWDEQRSQ 73
+DARFP + + C+ YVD+H+C G+D+ PCK F Y CP W E+WDE S+
Sbjct: 53 YDARFPQVRKQRQCFAYYVDFHRCNELMGQDYKPCKFFQNVYKDFCPGFWTERWDELLSE 112
Query: 74 GIF 76
G F
Sbjct: 113 GRF 115
>At1g32710 [C] KOG3057 Cytochrome c oxidase subunit VIb/COX12
Length = 134
Score = 50.4 bits (119), Expect = 4e-07
Identities = 22/65 (33%), Positives = 33/65 (49%), Gaps = 5/65 (7%)
Query: 15 DARFPNQNQTKHCWQSYVDYHKCINAKGEDFAPCKVFWKTYSSLCPVD-----WVEKWDE 69
+ RFP N+T+HC+ ++ YHKCI G D C S+CP + W++
Sbjct: 62 EERFPVTNETRHCFNRFMQYHKCIEKNGRDANDCNNLRDYVRSICPEELVSKIWLKSGRN 121
Query: 70 QRSQG 74
+ SQG
Sbjct: 122 KESQG 126
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.319 0.135 0.470
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,998,100
Number of Sequences: 60738
Number of extensions: 236872
Number of successful extensions: 472
Number of sequences better than 1.0e-05: 8
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 462
Number of HSP's gapped (non-prelim): 8
length of query: 82
length of database: 30,389,216
effective HSP length: 58
effective length of query: 24
effective length of database: 26,866,412
effective search space: 644793888
effective search space used: 644793888
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)