ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI4610 check: MH KL KOG1001 Replication, recombination and repair Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily
r_klactVI4610 check: MH KL KOG1001 Transcription Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI4610 1604631 1601290 -1114
(1114 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YLR032w [KL] KOG1001 Helicase-like transcription factor HLTF/DNA... 853 0.0
At5g43530 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 372 e-102
At5g22750 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 370 e-102
Hs21071052 [KL] KOG1001 Helicase-like transcription factor HLTF/... 325 2e-88
At5g05130 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 320 8e-87
SPBC23E6.02 [KL] KOG1001 Helicase-like transcription factor HLTF... 268 4e-71
SPCC330.01c [L] KOG1002 Nucleotide excision repair protein RAD16 259 1e-68
SPBC582.10c [KL] KOG1001 Helicase-like transcription factor HLTF... 259 2e-68
At3g20010 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 240 1e-62
SPAC17A2.12 [KL] KOG1001 Helicase-like transcription factor HLTF... 238 3e-62
At1g50410 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 233 2e-60
At1g11100 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 231 4e-60
YOR191w [KL] KOG1001 Helicase-like transcription factor HLTF/DNA... 230 8e-60
At1g61140 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 227 9e-59
At1g05120 [L] KOG1002 Nucleotide excision repair protein RAD16 206 1e-52
Hs19923174 [KL] KOG4439 RNA polymerase II transcription terminat... 169 3e-41
7298962 [KL] KOG4439 RNA polymerase II transcription termination... 163 2e-39
YBR114w [L] KOG1002 Nucleotide excision repair protein RAD16 156 2e-37
7298963 [KL] KOG4439 RNA polymerase II transcription termination... 156 2e-37
CE11083 [KL] KOG4439 RNA polymerase II transcription termination... 149 3e-35
At3g16600 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 137 9e-32
CE14110 [KL] KOG4439 RNA polymerase II transcription termination... 135 5e-31
At1g02670 [L] KOG1002 Nucleotide excision repair protein RAD16 117 1e-25
SPAC13G6.01c [KL] KOG1001 Helicase-like transcription factor HLT... 107 1e-22
SPAC144.05 [L] KOG0298 DEAD box-containing helicase-like transcr... 102 3e-21
CE25717 [R] KOG0391 SNF2 family DNA-dependent ATPase 96 2e-19
At2g25170 [R] KOG0383 Predicted helicase 96 3e-19
CE11572 [K] KOG0384 Chromodomain-helicase DNA-binding protein 96 4e-19
Hs21071044 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 95 5e-19
At5g19310 [BK] KOG0386 Chromatin remodeling complex SWI/SNF comp... 94 9e-19
CE11028 [KL] KOG0387 Transcription-coupled repair protein CSB/RA... 94 1e-18
Hs4557565 [KL] KOG0387 Transcription-coupled repair protein CSB/... 93 2e-18
Hs4557449 [K] KOG0384 Chromodomain-helicase DNA-binding protein 93 2e-18
YIL126w [BK] KOG0386 Chromatin remodeling complex SWI/SNF compon... 93 3e-18
At3g19210 [L] KOG0390 DNA repair protein SNF2 family 92 3e-18
At3g06010 [BK] KOG0386 Chromatin remodeling complex SWI/SNF comp... 92 3e-18
YPL082c [K] KOG0392 SNF2 family DNA-dependent ATPase domain-cont... 92 6e-18
At3g12810 [R] KOG0391 SNF2 family DNA-dependent ATPase 92 6e-18
Hs22047966 [K] KOG0384 Chromodomain-helicase DNA-binding protein 91 1e-17
Hs5730067 [R] KOG0391 SNF2 family DNA-dependent ATPase 90 2e-17
Hs22054523 [L] KOG0298 DEAD box-containing helicase-like transcr... 90 2e-17
SPAC1250.01 [BK] KOG0386 Chromatin remodeling complex SWI/SNF co... 90 2e-17
Hs4557447 [K] KOG0384 Chromodomain-helicase DNA-binding protein 90 2e-17
Hs22047300 [K] KOG0384 Chromodomain-helicase DNA-binding protein 89 3e-17
At3g57300 [L] KOG0388 SNF2 family DNA-dependent ATPase 89 3e-17
CE05553 [BK] KOG0386 Chromatin remodeling complex SWI/SNF compon... 89 5e-17
At5g66750 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sma... 89 5e-17
Hs21071056 [BK] KOG0386 Chromatin remodeling complex SWI/SNF com... 88 7e-17
SPAC1783.05 [K] KOG0384 Chromodomain-helicase DNA-binding protein 88 9e-17
At2g40770 [L] KOG0298 DEAD box-containing helicase-like transcri... 88 9e-17
YFR038w [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small... 87 1e-16
Hs21071058 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 87 1e-16
YDR334w [R] KOG0391 SNF2 family DNA-dependent ATPase 87 1e-16
SPAC20G8.08c [B] KOG0389 SNF2 family DNA-dependent ATPase 87 1e-16
YOR290c [BK] KOG0386 Chromatin remodeling complex SWI/SNF compon... 87 2e-16
Hs21071050 [BK] KOG0386 Chromatin remodeling complex SWI/SNF com... 87 2e-16
Hs21071048 [BK] KOG0386 Chromatin remodeling complex SWI/SNF com... 87 2e-16
Hs14149730 [B] KOG0389 SNF2 family DNA-dependent ATPase 87 2e-16
ECU01g0350 [K] KOG0384 Chromodomain-helicase DNA-binding protein 87 2e-16
YBR245c [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small... 86 2e-16
SPBC1826.01c [K] KOG0392 SNF2 family DNA-dependent ATPase domain... 86 2e-16
ECU03g1530 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-c... 86 2e-16
CE27114 [BK] KOG0386 Chromatin remodeling complex SWI/SNF compon... 86 2e-16
CE16277 [B] KOG0389 SNF2 family DNA-dependent ATPase 86 2e-16
At3g06400 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sma... 86 2e-16
SPAC3G6.01 [K] KOG0384 Chromodomain-helicase DNA-binding protein 86 3e-16
Hs13376715 [K] KOG0384 Chromodomain-helicase DNA-binding protein 86 3e-16
ECU09g0410 [KL] KOG0387 Transcription-coupled repair protein CSB... 85 6e-16
YOR304w [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small... 85 7e-16
YAL019w [B] KOG0389 SNF2 family DNA-dependent ATPase 85 7e-16
At5g18620 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sma... 85 7e-16
ECU10g1320 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 84 9e-16
Hs6912622_2 [L] KOG0390 DNA repair protein SNF2 family 84 9e-16
SPCC1235.05c [B] KOG0389 SNF2 family DNA-dependent ATPase 84 1e-15
CE18196 [K] KOG0384 Chromodomain-helicase DNA-binding protein 84 2e-15
7303422 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small... 84 2e-15
At3g54280 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-co... 83 2e-15
At2g28290 [BK] KOG0386 Chromatin remodeling complex SWI/SNF comp... 83 2e-15
Hs21362042 [K] KOG0384 Chromodomain-helicase DNA-binding protein 83 3e-15
Hs21071046 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 83 3e-15
At1g03750 [KL] KOG0387 Transcription-coupled repair protein CSB/... 82 4e-15
SPAC25A8.01c [B] KOG0389 SNF2 family DNA-dependent ATPase 82 5e-15
CE00789 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small... 82 6e-15
At2g18760 [KL] KOG0387 Transcription-coupled repair protein CSB/... 82 6e-15
At2g44980 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sma... 81 8e-15
YLR247c [L] KOG0298 DEAD box-containing helicase-like transcript... 81 1e-14
7293795 [R] KOG0383 Predicted helicase 81 1e-14
Hs4506397 [L] KOG0390 DNA repair protein SNF2 family 80 2e-14
At5g44800 [R] KOG0383 Predicted helicase 80 2e-14
At2g46020 [BK] KOG0386 Chromatin remodeling complex SWI/SNF comp... 80 2e-14
7300091 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-cont... 80 2e-14
YJR035w [KL] KOG0387 Transcription-coupled repair protein CSB/RA... 79 3e-14
SPAC15A10.03c [L] KOG0390 DNA repair protein SNF2 family 79 3e-14
7295868 [L] KOG0390 DNA repair protein SNF2 family 79 3e-14
7297570 [B] KOG0389 SNF2 family DNA-dependent ATPase 79 4e-14
Hs4557451 [R] KOG0383 Predicted helicase 78 9e-14
Hs17454125 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-c... 77 1e-13
CE26384 [L] KOG0298 DEAD box-containing helicase-like transcript... 77 1e-13
YGL163c [L] KOG0390 DNA repair protein SNF2 family 77 2e-13
7295870 [K] KOG0384 Chromodomain-helicase DNA-binding protein 77 2e-13
SPBP35G2.10 [R] KOG0383 Predicted helicase 76 3e-13
Hs4557453 [R] KOG0383 Predicted helicase 76 3e-13
Hs21914927 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 76 3e-13
CE23294 [KL] KOG4439 RNA polymerase II transcription termination... 76 3e-13
At2g13370 [K] KOG0384 Chromodomain-helicase DNA-binding protein 76 3e-13
YGL150c [L] KOG0388 SNF2 family DNA-dependent ATPase 76 3e-13
SPCP25A2.02c [KL] KOG0387 Transcription-coupled repair protein C... 76 3e-13
Hs20533808 [R] KOG0383 Predicted helicase 75 4e-13
Hs20536191 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 75 6e-13
7294205 [BK] KOG0386 Chromatin remodeling complex SWI/SNF compon... 75 6e-13
CE25143 [L] KOG0390 DNA repair protein SNF2 family 75 7e-13
YER164w [K] KOG0384 Chromodomain-helicase DNA-binding protein 74 1e-12
YBR073w [L] KOG0390 DNA repair protein SNF2 family 74 1e-12
SPAC22F3.03c [L] KOG0390 DNA repair protein SNF2 family 74 2e-12
Hs15805014 [R] KOG0391 SNF2 family DNA-dependent ATPase 74 2e-12
ECU09g1890 [L] KOG0388 SNF2 family DNA-dependent ATPase 74 2e-12
Hs20336209 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box... 72 4e-12
Hs20336207 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box... 72 4e-12
Hs20336205 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box... 72 4e-12
At5g63950 [KL] KOG0387 Transcription-coupled repair protein CSB/... 72 4e-12
CE23323 [L] KOG0390 DNA repair protein SNF2 family 71 8e-12
CE15856 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-cont... 71 8e-12
At2g02090 [B] KOG0389 SNF2 family DNA-dependent ATPase 71 1e-11
HsM8922362 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 70 2e-11
Hs14767157 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 70 2e-11
CE17477 [R] KOG1016 Predicted DNA helicase DEAD-box superfamily 70 2e-11
CE03657 [R] KOG0383 Predicted helicase 70 2e-11
7295362 [L] KOG0298 DEAD box-containing helicase-like transcript... 70 2e-11
CE17716 [R] KOG0383 Predicted helicase 69 3e-11
At4g31900 [R] KOG0383 Predicted helicase 69 3e-11
At1g08600 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box ... 69 3e-11
CE11450 [KL] KOG4439 RNA polymerase II transcription termination... 68 7e-11
7301343 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box su... 67 1e-10
HsM14149926 [K] KOG0384 Chromodomain-helicase DNA-binding protein 66 3e-10
SPAC3G6.12 [L] KOG0388 SNF2 family DNA-dependent ATPase 64 1e-09
Hs20538502 [R] KOG1016 Predicted DNA helicase DEAD-box superfamily 64 2e-09
7296236 [K] KOG0384 Chromodomain-helicase DNA-binding protein 64 2e-09
SPCC1620.14c [BK] KOG0386 Chromatin remodeling complex SWI/SNF c... 59 3e-08
CE27689 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 D... 59 6e-08
CE27688 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 D... 59 6e-08
At1g05480 [L] KOG0390 DNA repair protein SNF2 family 58 7e-08
At1g48310 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1... 57 1e-07
Hs21071060 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL... 57 2e-07
7300511 [L] KOG0388 SNF2 family DNA-dependent ATPase 57 2e-07
At3g24340 [L] KOG0390 DNA repair protein SNF2 family 54 1e-06
CE17314 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box su... 54 1e-06
At3g42670 [L] KOG0390 DNA repair protein SNF2 family 54 1e-06
Hs17441908 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL... 52 7e-06
At5g20420 [L] KOG0390 DNA repair protein SNF2 family 52 7e-06
>YLR032w [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1169
Score = 853 bits (2205), Expect = 0.0
Identities = 490/1192 (41%), Positives = 687/1192 (57%), Gaps = 114/1192 (9%)
Query: 8 DEKPRFFRDE---DESVINL---NESRSLFVQDEADDSDD----------GQGXXXXXXX 51
+E+ RFF D+ E+ +N N+ LF DD DD G+G
Sbjct: 7 EERKRFFNDDLDTSETSLNFKSENKESFLFANSHNDDDDDVVVSVSDTTEGEGDRSIVPV 66
Query: 52 XXXXXXXXKERFFESLKEILGENMISSSQLHTLWSSYGLLKDGISIAADKFFEDXXXXXX 111
+ +F L I+ E + + L +G ++G+S+A +F+
Sbjct: 67 RREIEEEGQNQFITELLRIIPE--MPKDLVMELNEKFGSQEEGLSLALSHYFDHNSGTSI 124
Query: 112 XXXXXXMPAGDNIEVXXXXXXXXXXXXXXXXXXXXXXXXFTNKRTSTQAGLESPMSSDKG 171
+P+ N F N Q LE ++
Sbjct: 125 SK----IPSSPNQLNTLSDTSNSTLSPSSFHPKRRRIYGFRN-----QTRLEDKVT---- 171
Query: 172 RNRWSRYIGSIHTMGFATRPTVKPVPIGSRLGFKKSVPKDLPL----GKSLQHQHCSHLV 227
W R+IG++ G ATRPTV+P+ GS++ K+S + + + + LV
Sbjct: 172 ---WKRFIGALQVTGMATRPTVRPLKYGSQMKLKRSSEEISATKVYDSRGRKKASMASLV 228
Query: 228 RLIDTSQDRELGRMPEDVARILYPLLDYSEQVSLEPYLLINNGKRFSVGDNIYIRIDCYL 287
R+ D DRE+GR+ ED+A+ILYPLL S ++S E L+ + KR S+GD+ +++DC+L
Sbjct: 229 RIFDIQYDREIGRVSEDIAQILYPLLS-SHEISFEVTLIFCDNKRLSIGDSFILQLDCFL 287
Query: 288 TSQAFV------------RIEGGSILNKSFIN--------DHGMDTRQLHRAGAIMALFD 327
TS F R EGG+ K N D +++R + A++ LFD
Sbjct: 288 TSLIFEERNDGESLMKRRRTEGGNKREKDNGNFGRTLTETDEELESRS--KRLALLKLFD 345
Query: 328 AINIQPVYGDTK-------------------NEMIPNYQ----ENTVSSSQFQDEALNIN 364
+ ++P+ + K N+ I + Q N + +Q ++E +N+N
Sbjct: 346 KLRLKPILDEQKALEKHKIELNSDPEIIDLDNDEICSNQVTEVHNNLRDTQHEEETMNLN 405
Query: 365 QLKSFYRITQSAASLQNLPETTPDESLFKLQLRRYQKQSLSWMLKREYEYSHLSEKAAEV 424
QLK+FY+ QS+ SL++LPET P +FKL+LR YQKQ L+WML+RE E++ +
Sbjct: 406 QLKTFYKAAQSSESLKSLPETEPSRDVFKLELRNYQKQGLTWMLRREQEFAKAASDGEAS 465
Query: 425 SIDGNSMNPLWKKFRWPS-------NSKQGTPNHEDDCFFYANLYTGEFSIEKPVIKTII 477
N +NPLWK+F+WP+ N +Q N ED FFYANL++GEFS+ KP++KT+I
Sbjct: 466 ETGANMINPLWKQFKWPNDMSWAAQNLQQDHVNVEDGIFFYANLHSGEFSLAKPILKTMI 525
Query: 478 NGGILADEMGLGKTISALALICTASYD-EAHEKKIESTKKPSMKEMSSQVDSSPLRHSQH 536
GGIL+DEMGLGKT++A +L+ + +D + +KK+ + ++ D+ P +
Sbjct: 526 KGGILSDEMGLGKTVAAYSLVLSCPHDSDVVDKKLFDIENTAVS------DNLPSTWQDN 579
Query: 537 KHDTYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKDLRAYVLGPNAP-S 595
K YA +TTLIVVPMSLL QW +EF KAN E+YYG N+ L+ + P +
Sbjct: 580 KKP-YASKTTLIVVPMSLLTQWSNEFTKANNSPDMYHEVYYGGNVSSLKTLLTKTKTPPT 638
Query: 596 VIITTYGIIQSEYGRTS-----------TSGLFNVVFFRIILDEGHTIRNRSTRTSKAVI 644
V++TTYGI+Q+E+ + S +SGLF+V F+RII+DEGH IRNR+T TSKAV+
Sbjct: 639 VVLTTYGIVQNEWTKHSKGRMTDEDVNISSGLFSVNFYRIIIDEGHNIRNRTTVTSKAVM 698
Query: 645 ALRSSRKWILTGTPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQAFDVI 704
AL+ KW+LTGTPIINRLDDL+SLV+FL L+PW INYWK +VS PFE NY QAFDV+
Sbjct: 699 ALQGKCKWVLTGTPIINRLDDLYSLVKFLELDPWRQINYWKTFVSTPFESKNYKQAFDVV 758
Query: 705 NAVLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEG 764
NA+LEPVLLRRTK MKD DGKPLV LPPKEV++++L S S+ +Y+ +L+ AE SVK G
Sbjct: 759 NAILEPVLLRRTKQMKDKDGKPLVELPPKEVVIKRLPFSKSQDLLYKFLLDKAEVSVKSG 818
Query: 765 LAKGDLLKNYTNILVHILRLRQVCCHLDLLKKTXXXXXXXXXXXXNSTQNISSI--LMXX 822
+A+GDLLK Y+ ILVHILRLRQVCCH L+ T+ + LM
Sbjct: 819 IARGDLLKKYSTILVHILRLRQVCCHPGLIGSQDENDEDLSKNNKLVTEQTVELDSLMRV 878
Query: 823 XXXXXXXXXXQDKLDALSANFRDIHSASEQLPSFECAICTTECIEPLSAVSITECLHTFC 882
+++LDA+ + + ++ S EC+ICTTE ++ L TEC H+FC
Sbjct: 879 VSERFDNSFSKEELDAMIQRLKVKYPDNKSFQSLECSICTTEPMD-LDKALFTECGHSFC 937
Query: 883 EPCLAEYIEFQQNKKLSINCPYCRMPISEANVLKLKEPIDAERGYELISFHSHFQSTKIK 942
E CL EYIEFQ +K L + CP CR I +L L + + E + +S+KI
Sbjct: 938 EKCLFEYIEFQNSKNLGLKCPNCRNQIDACRLLALVQTNSNSKNLEFKPYSPASKSSKIT 997
Query: 943 ALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDMKERTR 1002
ALL+ L+ +Q++S GEQ+++FSQFS++LDILE EL +D IYKFDGRL +KERT
Sbjct: 998 ALLKELQLLQDSSAGEQVVIFSQFSTYLDILEKELTHTFSKDVAKIYKFDGRLSLKERTS 1057
Query: 1003 ILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQ 1062
+L F GGVGLNLTCAS A+MMDPWWSP MEDQAIDR+HRIGQ
Sbjct: 1058 VLADFAVKDYSRQKILLLSLKAGGVGLNLTCASHAYMMDPWWSPSMEDQAIDRLHRIGQT 1117
Query: 1063 QTVKVVRFIIDNSVEEKMLRIQERKRMLGDIVEGDEAERRQKRIEEIQMLFQ 1114
+VKV+RFII +S+EEKMLRIQE+KR +G+ ++ DE ERR++RIEEIQMLF+
Sbjct: 1118 NSVKVMRFIIQDSIEEKMLRIQEKKRTIGEAMDTDEDERRKRRIEEIQMLFE 1169
>At5g43530 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1277
Score = 372 bits (955), Expect = e-102
Identities = 248/758 (32%), Positives = 395/758 (51%), Gaps = 78/758 (10%)
Query: 367 KSFYRITQSAASLQNLPETTPDESLFKLQLRRYQKQSLSWMLKREYEYSHLSEKAAEVSI 426
+S+ AA NL E +L LR YQKQ+L WM + SEK +V
Sbjct: 588 ESYMNRVVGAADSYNLEEMEAPSTL-TCNLRPYQKQALYWMSE--------SEKGIDVEK 638
Query: 427 DGNSMNPLWKKFRWPSNSKQGTPNHEDDCFFYANLYTGEFSIEKPVIKTIINGGILADEM 486
+++P W+ +R + P+ Y N+++GE +I+ P + GGILAD M
Sbjct: 639 AAETLHPCWEAYRI---CDERAPS------IYLNIFSGEATIQFPTATQMARGGILADAM 689
Query: 487 GLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKH----DTYA 542
GLGKT+ +ALI P +++ ++ R+ + H A
Sbjct: 690 GLGKTVMTIALILARP----------GRGNPENEDVLVADVNADKRNRKEIHMALTTVKA 739
Query: 543 YRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNN-IKDLRAYVLGPNAPSVIITTY 601
TLI+ PM+LL+QW+ E E +K +YYG + D +A + V++TTY
Sbjct: 740 KGGTLIICPMALLSQWKDELETHSKPDTVSVLVYYGGDRTHDAKAIA----SHDVVLTTY 795
Query: 602 GIIQSEYGRTSTSGLFNVV-FFRIILDEGHTIRNRSTRTSKAVIALRSSRKWILTGTPII 660
G++ S Y + + +F+ + ++RI+LDE HTI++ T+ +KA L S +W LTGTP+
Sbjct: 796 GVLTSAYKQDMANSIFHRIDWYRIVLDEAHTIKSWKTQAAKATFELSSHCRWCLTGTPLQ 855
Query: 661 NRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQAFDVINAVLEPVLLRRTKNMK 720
N+L+DL+SL+ FL++EPW + +W + + P+E G+ + +I A+L P++LRRTK +
Sbjct: 856 NKLEDLYSLLCFLHVEPWCNWAWWSKLIQKPYENGD-PRGLKLIKAILRPLMLRRTKETR 914
Query: 721 DVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGLAKGDLLKNYTNILVH 780
D +G ++ LPP +V V + + S +E+ Y ++ + ++ + +A+G +L NY NIL
Sbjct: 915 DKEGSLILELPPTDVQVIECEQSEAERDFYTALFKRSKVQFDQFVAQGKVLHNYANILEL 974
Query: 781 ILRLRQVCCHLDLLKKTXXXXXXXXXXXXNS---TQNISSILMXXXXXXXXXXXXQDKLD 837
+LRLRQ C H L+ N S+ QD D
Sbjct: 975 LLRLRQCCNHPFLVMSRADSQQYADLDSLARRFLDNNPDSVSQNAPSRAYIEEVIQDLRD 1034
Query: 838 ALSANFRDIHSASEQLPSFECAICTTECIEPLSAVSITECLHTFCEPCLAEYIEFQQNKK 897
S EC IC +P+ +T C H C CL + ++
Sbjct: 1035 GNSK---------------ECPICLESADDPV----LTPCAHRMCRECL---LTSWRSPS 1072
Query: 898 LSINCPYCRMPISEANVLKLKEPIDAERGYELISFHSHFQSTKIKALLRHLKQIQETSPG 957
+ CP CR + ++ P D+ +++ + +S+K+ LL+ L++I+++ G
Sbjct: 1073 CGL-CPICRTILKRTELISC--PTDSIFRVDVVK--NWKESSKVSELLKCLEKIKKSGSG 1127
Query: 958 EQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDMKERTRILEQFHXXXXXXXXX 1017
E+ IVFSQ++SFLD+LEI LR R +FDG+L K R ++L++F+
Sbjct: 1128 EKSIVFSQWTSFLDLLEIPLR----RRGFEFLRFDGKLAQKGREKVLKEFN--ETKQKTI 1181
Query: 1018 XXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSVE 1077
GGVGLNLT AS F+MDPWW+P +E+QAI RIHRIGQ++TV V RFI+ ++VE
Sbjct: 1182 LLMSLKAGGVGLNLTAASSVFLMDPWWNPAVEEQAIMRIHRIGQKRTVFVRRFIVKDTVE 1241
Query: 1078 EKMLRIQERK-RMLGDIVEGDEAERRQKRIEEIQMLFQ 1114
E+M ++Q RK RM+ + +E R R+EE++MLF+
Sbjct: 1242 ERMQQVQARKQRMIAGALTDEEV--RSARLEELKMLFR 1277
>At5g22750 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1029
Score = 370 bits (951), Expect = e-102
Identities = 284/931 (30%), Positives = 457/931 (48%), Gaps = 110/931 (11%)
Query: 224 SHLVRLIDTSQDRELGRMPEDVARILYPLLDYSEQVSLEPYLLINNGKRFSVGDNIYIRI 283
S +VR T E+GR+P + AR L PL+ +++ +E + + S+ D I + +
Sbjct: 167 SDIVRF-STKDSGEIGRIPNEWARCLLPLVR-DKKIRIEGSCK-SAPEALSIMDTILLSV 223
Query: 284 DCYLTSQAFVRIEGGSILNKSFINDHGMDTRQLHRAGAIMAL--FDAINIQPVYGDTKNE 341
Y+ S F + S S + M L ++ L F P +K
Sbjct: 224 SVYINSSMFQKHSATSFKTASNTAEESM-FHPLPNLFRLLGLIPFKKAEFTPEDFYSKKR 282
Query: 342 MIPNYQENTVSSSQFQ-DEALNINQLKSFYRITQ--SAASLQNLPETTPDESLFKLQ--- 395
+ + + + +S Q ++ N+NQ + Q S L N+ L +++
Sbjct: 283 PLSSKDGSAIPTSLLQLNKVKNMNQDANGDENEQCISDGDLDNIVGVGDSSGLKEMETPH 342
Query: 396 -----LRRYQKQSLSWMLKREYEYSHLSEKAAEVSIDGNSMNPLWKKFRWPSNSKQGTPN 450
LR YQKQ+L WM + E + +++AA + ++P W+ +
Sbjct: 343 TLLCELRPYQKQALHWMT--QLEKGNCTDEAATM------LHPCWEAYCLADKR------ 388
Query: 451 HEDDCFFYANLYTGEFSIEKPVIKTIINGGILADEMGLGKTISALALICTASYDEAHEKK 510
+ Y N +TG+ +I P + GGILAD MGLGKT+ ++L+ AH K
Sbjct: 389 ---ELVVYLNSFTGDATIHFPSTLQMARGGILADAMGLGKTVMTISLLL------AHSWK 439
Query: 511 IEST-----KKPSMKEMSSQVD---SSPLRHSQ---------HKHDTYAYRTTLIVVPMS 553
ST K +SS VD S P++ ++ + LIV PM+
Sbjct: 440 AASTGFLCPNYEGDKVISSSVDDLTSPPVKATKFLGFDKRLLEQKSVLQNGGNLIVCPMT 499
Query: 554 LLNQWQSEFEKANKDLKKRCEIYYGNNI-KDLRAYVLGPNAPSVIITTYGIIQSEYGRTS 612
LL QW++E E K ++YG + KD + + V+ITTYG++ SE+ + +
Sbjct: 500 LLGQWKTEIEMHAKPGSLSVYVHYGQSRPKDAKLL----SQSDVVITTYGVLTSEFSQEN 555
Query: 613 TS---GLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWILTGTPIINRLDDLFSL 669
++ G++ V +FRI+LDE HTI+N ++ S A AL + R+W LTGTPI N L+DL+SL
Sbjct: 556 SADHEGIYAVRWFRIVLDEAHTIKNSKSQISLAAAALVADRRWCLTGTPIQNNLEDLYSL 615
Query: 670 VQFLNLEPWSHINYWKRYVSVPFEKGNYAQAFDVINAVLEPVLLRRTKNMKDVDGKPLVS 729
++FL +EPW +W + V PFE+G+ + ++ ++L+P++LRRTK+ D +G+P++
Sbjct: 616 LRFLRIEPWGTWAWWNKLVQKPFEEGD-ERGLKLVQSILKPIMLRRTKSSTDREGRPILV 674
Query: 730 LPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGLAKGDLLKNYTNILVHILRLRQVCC 789
LPP + V +LS SE+ Y ++ + ++ + + +G +L NY +IL +LRLRQ C
Sbjct: 675 LPPADARVIYCELSESERDFYDALFKRSKVKFDQFVEQGKVLHNYASILELLLRLRQCCD 734
Query: 790 HLDLLKKTXXXXXXXXXXXXNSTQNISSI--LMXXXXXXXXXXXXQDKLDALSANFRDIH 847
H L+ T S + L ++ D S F +
Sbjct: 735 HPFLVMSR------------GDTAEYSDLNKLSKRFLSGKSSGLEREGKDVPSEAF--VQ 780
Query: 848 SASEQLPSFECAICTTECIEPLSAVSITECLHTFCEPCLAEYIEFQQNKKLSINCPYCRM 907
E+L E C C+E L +T C H C CL S CP CR
Sbjct: 781 EVVEELRKGEQGECPI-CLEALEDAVLTPCAHRLCRECLLA----SWRNSTSGLCPVCRN 835
Query: 908 PISEANVL----KLKEPIDAERGYELISFHSHFQSTKIKALLRHLKQIQETSPGEQIIVF 963
+S+ ++ + + +D E+ + +S+KI ALL L+ ++ S G + I+F
Sbjct: 836 TVSKQELITAPTESRFQVDVEKNW--------VESSKITALLEELEGLR--SSGSKSILF 885
Query: 964 SQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDMKERTRILEQFHXXXXXXXXXXXXXXX 1023
SQ+++FLD+L+I L R+ + DG L ++R ++L++F
Sbjct: 886 SQWTAFLDLLQIPLS----RNNFSFVRLDGTLSQQQREKVLKEF--SEDGSILVLLMSLK 939
Query: 1024 TGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSVEEKMLRI 1083
GGVG+NLT AS AF+MDPWW+P +E+QA+ RIHRIGQ + VK+ RFI+ +VEE+M +
Sbjct: 940 AGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKEVKIRRFIVKGTVEERMEAV 999
Query: 1084 QERK-RMLGDIVEGDEAERRQKRIEEIQMLF 1113
Q RK RM+ + E R RIEE++MLF
Sbjct: 1000 QARKQRMISGALTDQEV--RSARIEELKMLF 1028
>Hs21071052 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1009
Score = 325 bits (834), Expect = 2e-88
Identities = 204/631 (32%), Positives = 331/631 (52%), Gaps = 59/631 (9%)
Query: 487 GLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHDTYAYRTT 546
G K I +A C + + +TKK +K+ + V+ S + + RTT
Sbjct: 430 GSSKVIEDVAFACALT------SSVPTTKKKMLKKGACAVEGSKKTDVEERP-----RTT 478
Query: 547 LIVVPMSLLNQWQSEF-EKANKDLKKRCEIYYGNNIKDLRAYVLGPNAPSVIITTYGIIQ 605
LI+ P+S+L+ W +F + D+ +YYG + A + + +++TTY I+
Sbjct: 479 LIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALL---SKQDIVLTTYNILT 535
Query: 606 SEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWILTGTPIINRLDD 665
+YG S L ++ + R+ILDEGH IRN + + +KAV+ L S R+W+LTGTPI N L D
Sbjct: 536 HDYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNSLKD 595
Query: 666 LFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQAFDVINAVLEPVLLRRTKNMKDVDGK 725
L+SL+ FL L+P+ +W R + P G+ + ++++ + LRRTK K + GK
Sbjct: 596 LWSLLSFLKLKPFIDREWWHRTIQRPVTMGDEG-GLRRLQSLIKNITLRRTKTSK-IKGK 653
Query: 726 PLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGLAKGDLLKNYTNILVHILRLR 785
P++ LP ++V ++ + LS E+++YQS+ + ++ +G +L +Y ++L +LRLR
Sbjct: 654 PVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLR 713
Query: 786 QVCCHLDLLKKTXXXXXXXXXXXXNSTQNISSILMXXXXXXXXXXXXQDKLDALSANFRD 845
Q+CCH LL ++ + + L+ K+ +
Sbjct: 714 QICCHTYLL---TNAVSSNGPSGNDTPEELRKKLIR-------------KMKLI------ 751
Query: 846 IHSASEQLPSFECAICTTECIEPLSAVSITECLHTFCEPCLAEYIEFQQNKKLSINCPYC 905
+ S S++ ECAI C++ L+ IT C H FC+PC+ + I QN++ CP C
Sbjct: 752 LSSGSDE----ECAI----CLDSLTVPVITHCAHVFCKPCICQVI---QNEQPHAKCPLC 800
Query: 906 RMPISEANVLKLKEPIDAERGYELISFHSHFQSTKIKALLRHLKQIQETSPGEQIIVFSQ 965
R I E N+L+ P + R E S S+KI AL+ L +++ +P + +V SQ
Sbjct: 801 RNDIHEDNLLEC-PPEELARDSEKKSDMEWTSSSKINALMHALTDLRKKNPNIKSLVVSQ 859
Query: 966 FSSFLDILEIELRSHLPRDQVIIYKFDGRLDMKERTRILEQFHXXXXXXXXXXXXXXXTG 1025
F++FL ++EI L++ + + DG + K+R ++ F G
Sbjct: 860 FTTFLSLIEIPLKA----SGFVFTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLSLKAG 915
Query: 1026 GVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSVEEKMLRIQE 1085
GVGLNL+ ASR F+MDP W+P EDQ DR HR+GQ+Q V + +FI+ +SVEE ML+IQ
Sbjct: 916 GVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLKIQN 975
Query: 1086 RKRMLGDIVEGDEA----ERRQKRIEEIQML 1112
+KR L G + E +Q +I EI+ L
Sbjct: 976 KKRELAAGAFGTKKPNADEMKQAKINEIRTL 1006
>At5g05130 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 881
Score = 320 bits (820), Expect = 8e-87
Identities = 254/901 (28%), Positives = 433/901 (47%), Gaps = 144/901 (15%)
Query: 224 SHLVRLIDTSQDRELGRMPEDVARILYPLLDYSEQVSLEPYLLINNGKRFSVGDNIYIRI 283
++ +R+++T + ++G + VA +L P++D S + +E ++ N + S N Y RI
Sbjct: 94 NNAIRVLNTRSE-QVGHIERTVAAVLAPMID-SHTIVVEG--IVPNTRSNS---NRY-RI 145
Query: 284 DCYLTSQAFVRIEGGSILNKSFINDHGMDTRQLHRAGAIMALFDAINIQPVYGDTKNEMI 343
C + F ++E S + KS I+ G+ + + L +A+ ++ E +
Sbjct: 146 PCQI--HVFAKLEASSTV-KSTISRGGLVL--ISESDTSFGLSEAVVVK--------EQM 192
Query: 344 PNYQENTVSSSQFQDEALNINQLKSFYRITQSAASLQNLPETTPDESLFKLQLRRYQKQS 403
N + +V K F + ++ + L P + K +L +QK+
Sbjct: 193 GNGDKRSVD--------------KIFKLVDENVKLMGKLVAAEPPREVIKSELFAHQKEG 238
Query: 404 LSWMLKREYEYSHLSEKAAEVSIDGNSMNPLWKKFRWPSNSKQGTPNHEDDCFFYANLYT 463
L W+L RE K+ E+ P W++ K G + N T
Sbjct: 239 LGWLLHRE--------KSGELP-------PFWEE-------KDGE---------FLNTLT 267
Query: 464 GEFSIEKPVIKTIINGGILADEMGLGKTISALALICTASYDEAHEK------------KI 511
S ++P + GG+ AD+MGLGKT++ L+LI Y A KI
Sbjct: 268 NYRSDKRP---DPLRGGVFADDMGLGKTLTLLSLIAFDRYGNASTSTPTEEPLDGEGDKI 324
Query: 512 EST-KKPSMKEMSSQVDSSPLRHSQHKHDTYAYRTTLIVVPMSLLNQWQSEFEKANKDLK 570
E KK + S V L+ + +TTLIV P S+++ W ++ E+
Sbjct: 325 EKKGKKRGRGKSSESVTRKKLKTDDVVGMNVSQKTTLIVCPPSVISAWITQLEEHTVPGI 384
Query: 571 KRCEIYYG----NNIKDLRAYVLGPNAPSVIITTYGIIQSEYGRTSTSGLFNVVFFRIIL 626
+ +Y+G +++ +L Y +++TTYG + E S + + + RIIL
Sbjct: 385 LKVYMYHGGERTDDVNELMKY-------DIVLTTYGTLAVEES-WEDSPVKKMEWLRIIL 436
Query: 627 DEGHTIRNRSTRTSKAVIALRSSRKWILTGTPIINRLDDLFSLVQFLNLEPWSHINYWKR 686
DE HTI+N + + S+ V L++SR+W +TGTPI N DL+SL+ FL EP+S +YW+
Sbjct: 437 DEAHTIKNANAQQSRVVCKLKASRRWAVTGTPIQNGSFDLYSLMAFLRFEPFSIKSYWQS 496
Query: 687 YVSVPFEKGNYAQAFDVINAVLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSE 746
+ P +GN + + ++ + LRRTK K L+ LPPK V ++LS E
Sbjct: 497 LIQRPLGQGN-KKGLSRLQVLMATISLRRTKE------KSLIGLPPKTVETCYVELSPEE 549
Query: 747 KRVYQSMLEDAENSVKEGLAKGDLLKNYTNILVHILRLRQVCCHLDLLKKTXXXXXXXXX 806
+++Y M +A+ V+ + G L++NY+ +L ILRLRQ+C + L
Sbjct: 550 RQLYDHMEGEAKGVVQNLINNGSLMRNYSTVLSIILRLRQLCDDMSLCPP-----ELRSF 604
Query: 807 XXXNSTQNISSILMXXXXXXXXXXXXQDKLDALSANFRDIHSASEQLPSFECAICTTECI 866
S ++++ DK + L + + +A + F+C I CI
Sbjct: 605 TTSTSVEDVT-----------------DKPELL----QKLVAALQDGEDFDCPI----CI 639
Query: 867 EPLSAVSITECLHTFCEPCLAEYIEFQQNKKLSINCPYCRMPISEANVLKLKEPIDAERG 926
P + + IT C H FC C+ + + Q++K L CP CR ++++++ P
Sbjct: 640 SPPTNIIITRCAHIFCRACILQTL--QRSKPL---CPLCRGSLTQSDLYNAPPPPPDSSN 694
Query: 927 YELISFHSHFQSTKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQV 986
+ S +S+K+ ALL L ++ +P + +VFSQF L +LE L++
Sbjct: 695 TDGEDAKSSTKSSKVSALLSLLMASRQENPNTKSVVFSQFRKMLLLLETPLKA----AGF 750
Query: 987 IIYKFDGRLDMKERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSP 1046
I + DG + +K+RT+++ +F G G+NLT ASR ++ DPWW+P
Sbjct: 751 TILRLDGAMTVKKRTQVIGEFGNPELTGPVVLLASLKASGTGINLTAASRVYLFDPWWNP 810
Query: 1047 GMEDQAIDRIHRIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGDIVEGDEAERRQKRI 1106
+E+QA+DRIHRIGQ+Q VK++R I NS+EE++L +Q++K+ L + + +RRQK+
Sbjct: 811 AVEEQAMDRIHRIGQKQEVKMIRMIARNSIEERVLELQQKKKNLAN----EAFKRRQKKD 866
Query: 1107 E 1107
E
Sbjct: 867 E 867
>SPBC23E6.02 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1040
Score = 268 bits (685), Expect = 4e-71
Identities = 193/696 (27%), Positives = 322/696 (45%), Gaps = 132/696 (18%)
Query: 479 GGILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKH 538
GGILAD+MGLGKT+ ALAL+ T + P K +
Sbjct: 411 GGILADDMGLGKTVQALALLVT--------------RPPESKSV---------------- 440
Query: 539 DTYAYRTTLIVVPMSLLNQWQSEF-EKANKDLKKRCEIYYGNNIKDLRAYVLGPNAPSVI 597
+TTLI+ P+SLL QW +E K + I++G++ K A L + ++
Sbjct: 441 -----KTTLIITPVSLLQQWHNEILTKIAPSHRPTVYIHHGSSKKHKIAEQL--MSYDIV 493
Query: 598 ITTYGIIQSEYGRTSTSG----------------LFNVVFFRIILDEGHTIRNRSTRTSK 641
+TTY +I E+ F ++R+ILDE TI+NR+T ++
Sbjct: 494 LTTYNVIAYEFKNKMAYDKSIEDNAPIKKFEHLPFFEAEWYRVILDEAQTIKNRNTLAAR 553
Query: 642 AVIALRSSRKWILTGTPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKG-NYAQA 700
L S+ +W L+GTP+ N +++ +SL++FL ++P+S + + + ++P N +
Sbjct: 554 GCCLLESTYRWCLSGTPMQNGVEEFYSLIKFLRIKPYSDWSSFSKDFTIPLSSNINTSAP 613
Query: 701 FDVINAVLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENS 760
+L+ VLLRRTKN K +DGKP+++LPPK + + LSSSE Y ++ A+
Sbjct: 614 MKRFRGLLKAVLLRRTKNTK-IDGKPILTLPPKTAVKSETDLSSSEMEFYNTLQSGAQIQ 672
Query: 761 VKEGLAKGDLLKNYTNILVHILRLRQVCCHLDLLKKTXXXXXXXXXXXXNSTQNISSILM 820
+++ L +G + +Y ++LV +LRLRQ CCH L+ + + I
Sbjct: 673 MRKYLQEGTITTHYGSLLVLLLRLRQACCHPWLIVAREAAVDDNDSFQAKNRAIYNQI-- 730
Query: 821 XXXXXXXXXXXXQDKLDALSANFRDIHSASEQLPSFECAICTTECIEPLSAVSITECLHT 880
+ + + + + + +C++C E L I C H
Sbjct: 731 ----------------------YPEAVNRLKLIETLQCSLCMDVVAELL---IIVPCGHF 765
Query: 881 FCEPCLAEYIEFQQ-------NKKLSINCPYCRMPISEANVLK---------LKEPIDAE 924
C CL I + N+ +S C C I +L + +DA+
Sbjct: 766 LCRECLTHVITSSEDMAKQTSNENISPKCSVCEEYIDTERLLSYALFRRYSGMAPIVDAD 825
Query: 925 R------------------------GYELISFHSHF-QSTKIKALLRHLKQIQETSPGEQ 959
G ++ + H+ STKI+ L +K+I + P ++
Sbjct: 826 NKLRTENISELLPKQYSNILENRQMGMKIFTDPKHWTTSTKIEKALNAVKEIIKKQPTDK 885
Query: 960 IIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDMKERTRILEQFHXXXXXXXXXXX 1019
I++FSQF SFL++ + R ++ + + G L ER + L F
Sbjct: 886 ILIFSQFVSFLELFTVPFR----QEGIKYLMYTGGLSTAERNQALINFE--VDPNVRVLL 939
Query: 1020 XXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSVEEK 1079
G VGLNLTCA+ ++DP+W+P +E+QA+DR HRIGQ + V ++R + +N++EE+
Sbjct: 940 ISLKAGNVGLNLTCANHVIILDPFWNPYIEEQAVDRAHRIGQDKPVNILRIVTNNTIEER 999
Query: 1080 MLRIQERKRMLGDIVEGDEAERRQKRI--EEIQMLF 1113
+L +Q+RKR L D G++ R R+ +E+ LF
Sbjct: 1000 VLALQDRKRELIDSALGEKGLREISRLNTKELSFLF 1035
>SPCC330.01c [L] KOG1002 Nucleotide excision repair protein RAD16
Length = 963
Score = 259 bits (663), Expect = 1e-68
Identities = 207/690 (30%), Positives = 320/690 (46%), Gaps = 161/690 (23%)
Query: 479 GGILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKH 538
GGILADEMG+GKTI +AL+ + E KP
Sbjct: 378 GGILADEMGMGKTIQTIALLLS-----------EPRGKP--------------------- 405
Query: 539 DTYAYRTTLIVVPMSLLNQWQSEFEK-ANKDLKKRCEIYYGNNIKDLRAYVLGPNAPSVI 597
TL+V P+ + QW+ E + NK L +YYG +D+ L ++ V+
Sbjct: 406 -------TLVVAPVVAIMQWKEEIDTHTNKALSTY--LYYGQ-ARDISGEEL--SSYDVV 453
Query: 598 ITTYGIIQSEYGRTSTSG-------------LFNVVFFRIILDEGHTIRNRSTRTSKAVI 644
+T+Y +I+S Y R SG L + F+RIILDE H I++R+ T++AV
Sbjct: 454 LTSYNVIESVY-RKERSGFRRKNGVVKEKSLLHQMEFYRIILDEAHGIKSRTCNTARAVC 512
Query: 645 ALRSSRKWILTGTPIINRLDDLFSLVQFLNLEPW-------------------------- 678
LR++RK L+GTP+ NR+ +LFSL++FL +P+
Sbjct: 513 GLRTTRKICLSGTPLQNRIGELFSLLRFLRADPFAYYYCLQCECKSLHWRFSDRSNCDEC 572
Query: 679 -----SHINYWKRYVSVPFEKGNYAQ----AFDVINAVLEPVLLRRTKNMKDVDGKPLVS 729
SH Y+ + P +K Y AF ++++L+ ++LRRTK + D +
Sbjct: 573 GHKPMSHTCYFNAEMLKPIQKFGYEGPGKLAFKKVHSLLKHIMLRRTKLERADD----LG 628
Query: 730 LPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGLAKGDLLKNYTNILVHILRLRQVCC 789
LPP+ V V K + E+ VYQS+ D++ LA+G +L NY NI I R+RQ+
Sbjct: 629 LPPRVVEVRKDLFNEEEEDVYQSLYMDSKRKFNTYLAEGVVLNNYANIFQLITRMRQMAD 688
Query: 790 HLDLLKKTXXXXXXXXXXXXNSTQNISSILMXXXXXXXXXXXXQDKLDALSANFRDIHSA 849
H DL+ L++ + +
Sbjct: 689 HPDLV--------------------------------------------LASKRKTVDIE 704
Query: 850 SEQLPSFECAICTTECIEPLSAVSITECLHTFCEPCLAEYIEFQQNKKLSINCPYCRMPI 909
+++ + C IC + + + C HTFC C+ EYI + + ++NCP C +P+
Sbjct: 705 NQE--NIVCKICDEVAQDAIES----RCHHTFCRLCVTEYINAAGDGE-NVNCPSCFIPL 757
Query: 910 SEANVLKLKEPIDAERGYEL-----ISFHSHFQSTKIKALLRHLKQIQETSPGEQIIVFS 964
S E E+ I +S STKI+AL+ L +++ + IVFS
Sbjct: 758 SIDLSAPALEDFSEEKFKNASILNRIDMNSWRSSTKIEALVEELYLLRKKDRTLKSIVFS 817
Query: 965 QFSSFLDILEIELRSHLPRDQVIIYKFDGRLDMKERTRILEQFHXXXXXXXXXXXXXXXT 1024
QF+S LD++ LR + K DG + K R +E F
Sbjct: 818 QFTSMLDLIHWRLR----KAGFNCVKLDGGMTPKARAATIEAF--SNDINITIFLVSLKA 871
Query: 1025 GGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSVEEKMLRIQ 1084
GGV LNLT AS+ FMMDPWW+ ++ QA+DRIHRIGQ++ +KV+ I+NS+E K++ +Q
Sbjct: 872 GGVALNLTEASQVFMMDPWWNGAVQWQAMDRIHRIGQKRPIKVITLCIENSIESKIIELQ 931
Query: 1085 ERK-RMLGDIVEGDEAERRQKRIEEIQMLF 1113
E+K +M+ ++ DE Q +E++Q LF
Sbjct: 932 EKKAQMIHATIDQDEKALNQLSVEDMQFLF 961
>SPBC582.10c [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 830
Score = 259 bits (662), Expect = 2e-68
Identities = 197/655 (30%), Positives = 313/655 (47%), Gaps = 129/655 (19%)
Query: 472 VIKTIINGGILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPL 531
V K+ +GGILAD+MGLGKTI +ALI S PL
Sbjct: 250 VSKSSASGGILADDMGLGKTIQMIALIL----------------------------SHPL 281
Query: 532 RHSQHKHDTYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKDLRAYVLGP 591
+H + ++TL+V P+SL+ QW+SE + +K +Y+G + L +
Sbjct: 282 PKKKH-----SIKSTLVVAPLSLIKQWESEVQTKSK---LTAIVYHGASRYKLLKVI--- 330
Query: 592 NAPSVIITTYGIIQSEYGRTSTSG------------------LFNVVFFRIILDEGHTIR 633
+ V+ITTY I+ SE+ +T+G LF ++RIILDE HTI+
Sbjct: 331 HEYDVVITTYQILVSEWVSHNTTGTDGKSPTEAKSYEKKKPSLFAFYWWRIILDEAHTIK 390
Query: 634 NRSTRTSKAVIALRSSRKWILTGTPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFE 693
N+S++++ A AL+ +W LTGTP+ N +D+L+SLV+FL++ P++ + WK +S+P
Sbjct: 391 NKSSKSALACCALQGINRWCLTGTPLQNNVDELYSLVKFLHINPFNDQSVWKDQISLPLC 450
Query: 694 KGNYAQAFDVINAVLEPVLLRRTKNM------KDVDGKPLVSLPPKEVIVEKLQLSSSEK 747
+G F + +L ++LRRTK + KD G L L + V + SE+
Sbjct: 451 QGEENLVFKRLRMLLSVIMLRRTKTLLEANAGKDGTGGAL-KLSKRLVYKVICKFEESER 509
Query: 748 RVYQSMLEDAENSVKEGLAKGDLLKNYTNILVHILRLRQVCCHLDLLKKTXXXXXXXXXX 807
Y ++ + E ++ + G L KNYTNIL +LRLRQ C H L
Sbjct: 510 DFYSNLARNMERTMSNFVNSGKLGKNYTNILCLLLRLRQACNHPQSLN------------ 557
Query: 808 XXNSTQNISSILMXXXXXXXXXXXXQDKLDALSANFRDIHSASEQLPSFECAICTTECIE 867
Q++ D +AL AS+Q +
Sbjct: 558 -FQFEQDV------------------DAFNALDGAANTNKLASDQ--------DVDDLAN 590
Query: 868 PLSAVSITECLHTFCEPCLAEYIEFQQNKKLSINCPYCRMPISEANVLKLKEPIDAERGY 927
L V I +FC C+AE KK C C E ++G
Sbjct: 591 LLETVEIGSRKKSFCTICMAELPPDFHEKK----CKDCSRNFKE-----------LDKGI 635
Query: 928 ELISFHSHFQSTKIKALLRHL----KQIQETSPG-EQIIVFSQFSSFLDILEIELRSHLP 982
+ + + ++S+KI+ +L+ L ++ +T G + I+FSQF++FLDI+++ HL
Sbjct: 636 QDPNDKTLYKSSKIREILKILSLDEQEEDDTVRGLRKTIIFSQFTTFLDIIDL----HLR 691
Query: 983 RDQVIIYKFDGRLDMKERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDP 1042
+ + ++DGR++ + R + L+ G +GLNLTCASR + D
Sbjct: 692 KAGIGFVRYDGRMNNRAREKSLDLLR--SDSGTQVLLCSLKCGALGLNLTCASRVILCDV 749
Query: 1043 WWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGDIVEGD 1097
WW+P +E+QAIDR+HRIGQ++ V V + +++N++EEK++ +Q KR L GD
Sbjct: 750 WWNPAIEEQAIDRVHRIGQRRDVLVYKLVVENTIEEKIVELQNLKRDLAKQALGD 804
>At3g20010 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1047
Score = 240 bits (612), Expect = 1e-62
Identities = 214/790 (27%), Positives = 342/790 (43%), Gaps = 203/790 (25%)
Query: 479 GGILADEMGLGKTISALALICTASY----------------------DEAHEKKIESTK- 515
GGILAD+ GLGKT+S +ALI DE+ K ES
Sbjct: 304 GGILADDQGLGKTVSTIALILKQKIVSQLKSESSCKQETEALVLDADDESDNAKHESGSH 363
Query: 516 -KPSMKEMSS------------QVDSSPLRHSQHKHDTYAYRT---------TLIVVPMS 553
KP +K S+ + DSS + ++ + + R TLIV P S
Sbjct: 364 VKPELKVSSNSETSVLSACGNDENDSSDMEKAEDEEANSSTRAFQWKRPAAGTLIVCPAS 423
Query: 554 LLNQWQSEF-EKANKDLKKRCEIYYGNN-IKDLRAYVLGPNAPS---VIITTYGIIQSEY 608
++ QW E EK +++ K +Y+G+N KD PN + V++TTY I+ +E
Sbjct: 424 VVRQWARELDEKVSEESKLSVLVYHGSNRTKD-------PNELAEYDVVVTTYAIVTNEA 476
Query: 609 --------------------------------------------GRTSTSG--------- 615
GR ST+
Sbjct: 477 PNKFLVDEDENDEKNTDRYGLASGFSNNKKRKVVVGASKKSKRRGRKSTNDTSSEPDCGP 536
Query: 616 LFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWILTGTPIINRLDDLFSLVQFLNL 675
L V +FRI+LDE TI+N T+ +++ LR+ R+W L+GTPI N +DDL+S +FL
Sbjct: 537 LGKVGWFRIVLDEAQTIKNYRTQMARSCCTLRAKRRWCLSGTPIQNTIDDLYSYFRFLRY 596
Query: 676 EPWSHINYWKRYVSVPFEKGNYAQAFDVINAVLEPVLLRRTKNMKDVDGKPLVSLPPKEV 735
+P++ + + VP + N Q + + AVL ++LRRTK +DGKP+++LPPK V
Sbjct: 597 DPYAVYKSFYSTIKVPISR-NSCQGYKKLQAVLRAIMLRRTKGTL-LDGKPIINLPPKVV 654
Query: 736 IVEKLQLSSSEKRVYQSMLEDAENSVKEGLAKGDLLKNYTNILVHILRLRQVCCHLDLLK 795
+ ++ S +E+ Y+ + D+ + K G L +NY NIL+ +LRLRQ C H L+K
Sbjct: 655 NLSQVDFSVAERSFYKKLEADSRSQFKAYADAGTLSQNYANILLLLLRLRQACDHPQLVK 714
Query: 796 KTXXXXXXXXXXXXNSTQNISSILMXXXXXXXXXXXXQDKLDALSANFRDIHSASEQLPS 855
+ + +S + +A S + S+S
Sbjct: 715 R----------YNSDPVGKVSEAAVRRL-----------PREARSRLINRLESSS----- 748
Query: 856 FECAICTTECIEPLSAVSITECLHTFCEPCLAEYIEFQQNKKLSINCPYCRMPI------ 909
AIC EC EP +T C H FC C+ EYI +N + P C+ +
Sbjct: 749 ---AIC-YECNEPPEKPVVTLCGHIFCYECVLEYITGDEN---TCPVPRCKQQLARDVVF 801
Query: 910 SEANVLKLKEPIDA-----ERGYELISFHSH-FQSTKIKALLRHLKQIQE---------- 953
SE+++ + G + F F S+KIKA+L L+ + +
Sbjct: 802 SESSLRNCTSDDSGCSSSHDNGLDRSVFQKRDFCSSKIKAVLDILQSLSQPDSPNSAQHG 861
Query: 954 ------------------------TSPGE---QIIVFSQFSSFLDILEIELRSHLPRDQV 986
+SP + + I+FSQ++ LD++E+ + +
Sbjct: 862 QMPSSSRPYDDDDVTIVEPMRLHSSSPSQGAVKTIIFSQWTGMLDLVELRIL----ESGI 917
Query: 987 IIYKFDGRLDMKERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSP 1046
+ DG + + R R +++F G +GLN+ A ++D WW+P
Sbjct: 918 EFRRLDGTMSLAARDRAVKEF--SKKPDVKVMLMSLKAGNLGLNMVAACHVILLDLWWNP 975
Query: 1047 GMEDQAIDRIHRIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGDIVEGDE---AERRQ 1103
EDQAIDR HRIGQ + V V R I ++VE+++L++QE KR + G+E + +
Sbjct: 976 TTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILKLQEEKRTMVASAFGEEHGGSSATR 1035
Query: 1104 KRIEEIQMLF 1113
+++++ LF
Sbjct: 1036 LTVDDLKYLF 1045
>SPAC17A2.12 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 897
Score = 238 bits (608), Expect = 3e-62
Identities = 187/693 (26%), Positives = 305/693 (43%), Gaps = 130/693 (18%)
Query: 479 GGILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKH 538
GG++AD+MGLGKTI +AL+ T Q PLR
Sbjct: 271 GGVMADDMGLGKTIQTIALLLT------------------------QKSQDPLR------ 300
Query: 539 DTYAYRTTLIVVPMSLLNQWQSEFE-KANKDLKKRCEIYYGNNIKDLRAYVLGPNAPSVI 597
+T LIVV ++LL+QW E K + K I++G+ K+L +Y L V+
Sbjct: 301 -----KTNLIVVSVALLHQWAEELSTKVHPSKKLSVYIHHGSTKKNLDSYELSQY--DVV 353
Query: 598 ITTYGIIQSEYGRTST--------------SGLFNVVFFRIILDEGHTIRNRSTRTSKAV 643
+TTY ++ E + L ++RI+LDE HTIRNR T +K
Sbjct: 354 LTTYSMLAYEMKQNDAFNNNNPATATPPPACSLLETSWYRIVLDEAHTIRNRDTLAAKCC 413
Query: 644 IALRSSRKWILTGTPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVP---FEKGNYAQA 700
+ L + +W L+GTPI N +D+ +SL++FL ++P+ + + + +S P + A
Sbjct: 414 VKLDAKYRWCLSGTPIQNHIDEFYSLLKFLRIKPYCVWSLFAKDISRPLKSYRADIVEAA 473
Query: 701 FDVINAVLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENS 760
+ +L + RRTK + V+ P+V+LPPK + + L E+ +Y + A++
Sbjct: 474 LKRLRILLASTVFRRTKETR-VNNLPIVNLPPKTIRTVSVNLLPEERALYNEQMSSAQSL 532
Query: 761 VKEGLAKGDLLKNYTNILVHILRLRQVCCHLDLLKKTXXXXXXXXXXXXNSTQNISSILM 820
V L Y +LV +LRLRQ CCH L+K + N S
Sbjct: 533 VDNYFNNDHDLSRYGFLLVSLLRLRQFCCHPWLVKSSSLDNSFRIRDSENVRNACKS--- 589
Query: 821 XXXXXXXXXXXXQDKLDALSANFRDIHSASEQLPSFECAICTTECIEPLSAVSITECLHT 880
LD L+ L F C++C C+ P V I C H
Sbjct: 590 ---------------LDPLTI------ERIATLQDFNCSVCLDPCLAP---VFIIPCGHF 625
Query: 881 FCEPCLAEYI----EFQQNKKLSINCPYCRMPI-----SEANVLK-LKEPIDAERGYELI 930
C+ C++ + + CP CR I +A +L+ + P+++ + EL
Sbjct: 626 TCQECMSMLVGQKYGSSSTSTIIAKCPMCRGNIVQDSLVDATILQAIHGPLNSLKQLELD 685
Query: 931 SFHSHFQSTKIKALLRH----------------------LKQIQET-------SPGEQII 961
S + IK + L Q ++T E+I+
Sbjct: 686 MNQSFSEQESIKLRWENRIDQMFTKKFGKRASEWKSSSKLNQARQTILDIIGSKRNEKIL 745
Query: 962 VFSQFSSFLDILEIELRSH-LPRDQVIIYKFDGRLDMKERTRILEQFHXXXXXXXXXXXX 1020
V+SQFS +L ++ SH L + + ++DG + +R + L F+
Sbjct: 746 VYSQFSQYLCLV-----SHMLKLENIRHVRYDGTMSANQRQKSLHSFN--NDKDVLVMLV 798
Query: 1021 XXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSVEEKM 1080
G VGLNLT A+ + +P+++P +EDQAIDR+HR+GQQ+ V V RFI +++EE++
Sbjct: 799 SLKAGSVGLNLTIANHVILQEPFYNPSIEDQAIDRVHRLGQQKPVTVYRFITKDTIEERI 858
Query: 1081 LRIQERKRMLGDIVEGDEAERRQKRIEEIQMLF 1113
+ +Q +KR L R+++ ++L+
Sbjct: 859 VSVQRKKRQLVKEALDSNENNPLSRLDKEELLY 891
>At1g50410 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1056
Score = 233 bits (593), Expect = 2e-60
Identities = 208/784 (26%), Positives = 336/784 (42%), Gaps = 202/784 (25%)
Query: 479 GGILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDS---------- 528
GGILAD+ GLGKT+S +ALI + HE K++S + + + +D+
Sbjct: 324 GGILADDQGLGKTVSTIALILK----QMHEAKLKSKNSGNQEAEALDLDADDESENAFEK 379
Query: 529 --------------SPLRHSQHKHDTYAYRT---------TLIVVPMSLLNQWQSEF-EK 564
S ++ ++ + + + R TLIV P S++ QW E EK
Sbjct: 380 PESKASNGSGVNGDSGIKKAKGEEASTSTRKFNRKRPAAGTLIVCPASVVRQWARELDEK 439
Query: 565 ANKDLKKRCEIYYGNN-IKD---LRAYVLGPNAPSVIITTYGIIQSE------------- 607
+ K IY+G N KD L Y V++TTY I+ +E
Sbjct: 440 VTDEAKLSVLIYHGGNRTKDPIELAKY-------DVVMTTYAIVSNEVPKQPLVDDDEND 492
Query: 608 ------YGRTS----------------------------------TSGLFNVVFFRIILD 627
YG S + L V +FR++LD
Sbjct: 493 EKNSEKYGLASGFSINKKRKNVVGTTKKSKKKKGNNNAGDSSDPDSGTLAKVGWFRVVLD 552
Query: 628 EGHTIRNRSTRTSKAVIALRSSRKWILTGTPIINRLDDLFSLVQFLNLEPWSHINYWKRY 687
E TI+N T+ ++A LR+ R+W L+GTPI N +DDL+S +FL +P++ +
Sbjct: 553 EAQTIKNHRTQVARACCGLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFCHQ 612
Query: 688 VSVPFEKGNYAQAFDVINAVLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEK 747
+ P + N Q + + AVL ++LRRTK +DG+P+++LPPK + + ++ S E+
Sbjct: 613 IKGPISR-NSLQGYKKLQAVLRAIMLRRTKGTL-LDGQPIINLPPKTINLSQVDFSVEER 670
Query: 748 RVYQSMLEDAENSVKEGLAKGDLLKNYTNILVHILRLRQVCCHLDLLKKTXXXXXXXXXX 807
Y + D+ + K A G L +NY NIL+ +LRLRQ C H L+K+
Sbjct: 671 SFYVKLESDSRSQFKAYAAAGTLNQNYANILLMLLRLRQACDHPQLVKR----------Y 720
Query: 808 XXNSTQNISSILMXXXXXXXXXXXXQDKLDALSANFRDIHSASEQLPSFECAICTTECIE 867
+S +S ++ + L D+ S +L S IC C +
Sbjct: 721 NSDSVGKVS----------------EEAVKKLPK--EDLVSLLSRLES--SPICCV-CHD 759
Query: 868 PLSAVSITECLHTFCEPCLAEYIEFQQNKKLSINCPYCRMPISEANVLK---LKEPIDAE 924
P +T C H FC C+++YI ++ + P CR ++ V L+ + +
Sbjct: 760 PPEDPVVTLCGHIFCYQCVSDYITGDED---TCPAPRCREQLAHDVVFSKSTLRSCVADD 816
Query: 925 RGYELISFHSH---------FQSTKIKALLRHLKQI--QETSPGEQ-------------- 959
G +SH F S+KIKA+L L+ + Q TS Q
Sbjct: 817 LGCSSSEDNSHDKSVFQNGEFSSSKIKAVLDILQSLSNQGTSNSTQNGQMASSSQQPNDD 876
Query: 960 ---------------------------IIVFSQFSSFLDILEIELRSHLPRDQVIIYKFD 992
I+FSQ++ LD++E+ L + + + D
Sbjct: 877 DDDDDDDVTIVEKTSLKSTPSNGGPIKTIIFSQWTGMLDLVELS----LIENSIEFRRLD 932
Query: 993 GRLDMKERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQA 1052
G + + R R +++F G +GLN+ A ++D WW+P EDQA
Sbjct: 933 GTMSLIARDRAVKEF--SNDPDVKVMIMSLKAGNLGLNMIAACHVILLDLWWNPTTEDQA 990
Query: 1053 IDRIHRIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGDIVEGDE---AERRQKRIEEI 1109
IDR HRIGQ + V V R I N+VE+++L +QE KR + G++ + + ++++
Sbjct: 991 IDRAHRIGQTRPVTVTRITIKNTVEDRILALQEEKRKMVASAFGEDHGGSSATRLTVDDL 1050
Query: 1110 QMLF 1113
+ LF
Sbjct: 1051 KYLF 1054
>At1g11100 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1227
Score = 231 bits (590), Expect = 4e-60
Identities = 201/714 (28%), Positives = 315/714 (43%), Gaps = 132/714 (18%)
Query: 479 GGILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQV---DSSPLRHSQ 535
GGILAD+ GLGKT+S +ALI T + +S + SQV ++ + S
Sbjct: 565 GGILADDQGLGKTVSTIALILTERSTPYLPCEEDSKNGGCNQSDHSQVVFNENKVVEDSL 624
Query: 536 HKHDTYAYRTTLIVVPMSLLNQWQSEF-EKANKDLKKRCEIYYG-NNIKD---LRAYVLG 590
K TLIV P SL+ QW E +K + +Y+G + KD L Y
Sbjct: 625 CKMRGRPAAGTLIVCPTSLMRQWADELRKKVTLEAHLSVLVYHGCSRTKDPHELAKY--- 681
Query: 591 PNAPSVIITTYGIIQS------EYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVI 644
V+ITTY ++ E + L V +FR++LDE +I+N T+ S A
Sbjct: 682 ----DVVITTYSLVSKRKHMDCEPVEFLSGPLAQVSWFRVVLDEAQSIKNYKTQASIACS 737
Query: 645 ALRSSRKWILTGTPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQAFDVI 704
L + R+W L+GTPI N + DL+S +FL +P+S + + P + + +
Sbjct: 738 GLHAKRRWCLSGTPIQNSIADLYSYFRFLKYDPYSSYQTFCETIKNPISSYP-GEGYKTL 796
Query: 705 NAVLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEG 764
A+L+ V+LRRTK+ +DGKP++SLPPK + + ++ + E+ Y + D+ + KE
Sbjct: 797 QAILKKVMLRRTKDTL-LDGKPVISLPPKSIELRRVDFTKEERDFYSKLECDSRDQFKEY 855
Query: 765 LAKGDLLKNYTNILVHILRLRQVCCHLDLLKKTXXXXXXXXXXXXNSTQNISSILMXXXX 824
G + +NY NIL+ +LRLRQ C H L+ S L
Sbjct: 856 AEAGTVKQNYVNILLMLLRLRQACGHPLLV----------------------SSLSWSSS 893
Query: 825 XXXXXXXXQDKLDALSANFRDIHSASEQLPSFECAICTTECIEPLSAVSITECLHTFCEP 884
+KL L +H L C IC + + VS+ C H FC
Sbjct: 894 AEMVKKLPYEKLTFL------LHRLEASLAI--CGICNVR-LSTHAVVSL--CGHVFCNQ 942
Query: 885 CLAEYIEFQQNKKLSINCP--YCRMPISEANVL-------------KLKEPIDAERGYEL 929
C+ E + N+ CP YC++ + +++ KL P D +
Sbjct: 943 CICECLTRDNNQ-----CPLSYCKVGLEISSLFSRETLENAMLDLHKLDAPCDRTTSDPV 997
Query: 930 IS----FHSHFQSTKIKALLRHLKQI-QETSP---------------------------- 956
S + S+KIKA L L+ + + SP
Sbjct: 998 GSGEPCENLPCGSSKIKAALDILQSLSRPQSPATVMNDVNQSSENGENNQQLDKSFSLPA 1057
Query: 957 --------------GEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDMKERTR 1002
GE+ IVF+Q++ LD+LE L+S + +FDG++ + R
Sbjct: 1058 TPAKSSVGGVVNVAGEKAIVFTQWTKMLDLLEAGLKS----SGIQYRRFDGKMTVPARDA 1113
Query: 1003 ILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQ 1062
++ F+ + +GLN+ A M+D WW+P EDQAIDR HRIGQ
Sbjct: 1114 AVQDFNTLPDVSVMIMSLKAAS--LGLNMVAACHVIMLDLWWNPTTEDQAIDRAHRIGQT 1171
Query: 1063 QTVKVVRFIIDNSVEEKMLRIQERKRMLGDIVEGDE---AERRQKRIEEIQMLF 1113
+ VKVVRF + ++VE+++L +Q++KR + G+ + +E++ LF
Sbjct: 1172 RPVKVVRFTVKDTVEDRILALQQKKRKMVASAFGEHENGSRESHLSVEDLNYLF 1225
>YOR191w [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1619
Score = 230 bits (587), Expect = 8e-60
Identities = 186/700 (26%), Positives = 313/700 (44%), Gaps = 158/700 (22%)
Query: 479 GGILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKH 538
GG+LAD+MGLGKTI A+AL+ +E+ K
Sbjct: 964 GGLLADDMGLGKTIQAIALMLANRSEESKCK----------------------------- 994
Query: 539 DTYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYG-------NNIKDLRAYVLGP 591
T LIV P+S+L W+ E E K K +G + +DL Y
Sbjct: 995 ------TNLIVAPVSVLRVWKGELETKVKKRAKFTTFIFGGSGNGKVKHWRDLARY---- 1044
Query: 592 NAPSVIITTYGIIQSEY------------------------GRTSTSGLF-------NVV 620
++ +Y + +E+ R TS + +
Sbjct: 1045 ---DAVLVSYQTLANEFKKHWPKKLDGEQNQLPAVPHIQALNRLKTSNEYYSPFFCNDST 1101
Query: 621 FFRIILDEGHTIRNRSTRTSKAVIALRSSRKWILTGTPIINRLDDLFSLVQFLNLEPWSH 680
F+RI+LDEG I+N++TR SKA + +W+L+GTPI N +D+L+SL++FL + P+
Sbjct: 1102 FYRILLDEGQNIKNKNTRASKACCTINGMYRWVLSGTPIQNSMDELYSLIRFLRIPPYHK 1161
Query: 681 INYWKRYVSVPFEKGNYAQ--------AFDVINAVLEPVLLRRTKNMKDVDGKPLVSLPP 732
+K + F++ Q A + +L ++LRR+K K +DGKPL+ LPP
Sbjct: 1162 EQRFKLDIGRFFQRNKQYQYDNEDRKNALRKVRVLLNAIMLRRSKADK-IDGKPLLELPP 1220
Query: 733 KEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGLAKGDLLKNYTNILVHILRLRQVCCHLD 792
K V V++ +L E + Y + LE ++ + L +Y+++L +LRLRQ CCH +
Sbjct: 1221 KIVEVDESRLKGEELKFY-TALESKNQALAKKLLNNSTRGSYSSVLTLLLRLRQACCHSE 1279
Query: 793 LLKKTXXXXXXXXXXXXNSTQNISSILMXXXXXXXXXXXXQDKLDALSANFRDIHSASE- 851
L+ S ++ D L ++ H + E
Sbjct: 1280 LVVMGEKKAEGTKVANGKSFED----------------------DWLRLYYKITHMSGEA 1317
Query: 852 ------QLPSFECAICTTECIEPLSAVSITECLHTFCEPCLAEYIE----FQQNKK---- 897
+ S C C E +EP + +T C H C+ C+ +IE Q KK
Sbjct: 1318 QAQVITSMNSMTCFWC-MEQLEPEAMSVLTGCGHLICDTCIEPFIEESSMLPQAKKTKGG 1376
Query: 898 -LSINCPYCRMPISEANVLKLK------------EPIDAE------------RGYELISF 932
+I C C+ +E +++ K E + AE + + +F
Sbjct: 1377 AFAIPCKDCQRLTNEKDIVSHKLYDQVINQGFTEEDLHAEYLSEMEKQKIQQKNVYVPNF 1436
Query: 933 HSHFQSTKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFD 992
S STKI+ ++ ++++ + S E+II+FSQF++F +ILE L++ L K+
Sbjct: 1437 ESLEPSTKIEQCIQVIQRVFDESATEKIIIFSQFTTFFEILEHFLKNKL---NFPYLKYI 1493
Query: 993 GRLDMKERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQA 1052
G ++ + R+ ++ +F+ G GL LTCA+ ++DP+W+P +E+QA
Sbjct: 1494 GSMNAQRRSDVINEFY--RDPEKRILLISMKAGNSGLTLTCANHVVIVDPFWNPYVEEQA 1551
Query: 1053 IDRIHRIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGD 1092
DR +RI Q + V+V + I +SVE+++ +Q+RK+ + D
Sbjct: 1552 QDRCYRISQTKKVQVHKLFIKDSVEDRISELQKRKKEMVD 1591
>At1g61140 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1287
Score = 227 bits (578), Expect = 9e-59
Identities = 203/757 (26%), Positives = 323/757 (41%), Gaps = 179/757 (23%)
Query: 478 NGGILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLR----- 532
+GGILAD+ GLGKT+S +ALI A + ESTKK S + +PL+
Sbjct: 585 SGGILADDQGLGKTVSTIALILKERSKPAQACE-ESTKKEIFDLESETGECAPLKPSGRS 643
Query: 533 -HSQHKH----------DTYAYRT------TLIVVPMSLLNQWQSEF-EKANKDLKKRCE 574
H +H D+ T TL+V P S++ QW E +K +
Sbjct: 644 KHFEHSQLLSNENKVGGDSVGKVTGRPAAGTLVVCPTSVMRQWADELHKKVTSEANLSVL 703
Query: 575 IYYGNN-IKD---LRAYVLGPNAPSVIITTYGIIQSEY------------------GRTS 612
+Y+G++ KD L Y V++TT+ I+ E G T+
Sbjct: 704 VYHGSSRTKDPHELAKY-------DVVVTTFSIVSMEVPKQPLVDDEDEEKDGVHDGGTA 756
Query: 613 TSG-----------------------------LFNVVFFRIILDEGHTIRNRSTRTSKAV 643
+G L V +FR++LDE +I+N T+ ++A
Sbjct: 757 ATGFCSNKKRKYPPDSKKKGSKKKKVEFLSGPLAKVSWFRVVLDEAQSIKNYKTQVARAC 816
Query: 644 IALRSSRKWILTGTPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQAFDV 703
LR+ R+W L+GTPI N +DDL+S +FL +P+S + + P + N + +
Sbjct: 817 WGLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYSSYVLFCSTIKNPITR-NPVKGYQK 875
Query: 704 INAVLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKE 763
+ A+L+ V+LRRTK +DGKP++SLPPK + + K+ + E+ Y + ++ +E
Sbjct: 876 LQAILKTVMLRRTKGSL-LDGKPIISLPPKSIELRKVDFTVEERDFYSKLEAESRTQFRE 934
Query: 764 GLAKGDLLKNYTNILVHILRLRQVCCHLDLLK-KTXXXXXXXXXXXXNSTQNISSILMXX 822
G + +NY NIL+ +LRLRQ C H L+ + Q+ +S+ +
Sbjct: 935 YAEAGTVKQNYVNILLMLLRLRQACDHPLLVNGEYSFTWESSVGLAKKQIQSDASLAI-- 992
Query: 823 XXXXXXXXXXQDKLDALSANFRDIHSASEQLPSFECAICTTECIEPLSAVSITECLHTFC 882
C IC + +++V C H FC
Sbjct: 993 -----------------------------------CGICNDAPEDAVASV----CGHVFC 1013
Query: 883 EPCLAEYIEFQQNKKLSINCPYCRMPISEAN--------VLKLKEPIDAERGYELISFHS 934
+ C+ E + N NC R+ IS + + ++E +
Sbjct: 1014 KQCIYERLTGDSNHCPFANC-NVRLTISSLSSKTRLDDAMPDMQERATSNSLSPCSDEDL 1072
Query: 935 HFQSTKIKALLRHLK------------QIQETS-----------------------PGEQ 959
+ S+KIKA L L+ QI E GE+
Sbjct: 1073 PYGSSKIKAALEILQSLPKAHDLTDSNQISENREYSGLSITPVKNEGMSVDVPIKVAGEK 1132
Query: 960 IIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDMKERTRILEQFHXXXXXXXXXXX 1019
IVFSQ++ L++LE L S + + DG + + R + ++ F+
Sbjct: 1133 AIVFSQWTKMLNLLEASLVS----SHIQYRRLDGTMSVAARDKAVQDFNTLPEVTVMIMS 1188
Query: 1020 XXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSVEEK 1079
+ +GLN+ A M+D WW+P EDQAIDR HRIGQ + V VVRF + ++VE++
Sbjct: 1189 LKAAS--LGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVVRFTVKDTVEDR 1246
Query: 1080 MLRIQERKRMLGDIVEG-DEAERRQKR--IEEIQMLF 1113
+L +Q++KRM+ G DE RQ +E++ LF
Sbjct: 1247 ILALQQKKRMMVASAFGEDEKGSRQSHLTVEDLSYLF 1283
>At1g05120 [L] KOG1002 Nucleotide excision repair protein RAD16
Length = 833
Score = 206 bits (525), Expect = 1e-52
Identities = 163/538 (30%), Positives = 249/538 (45%), Gaps = 106/538 (19%)
Query: 616 LFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWILTGTPIINRLDDLFSLVQFLNL 675
L +V + RIILDE H I+ R + T++AV AL ++ +W L+GTP+ NR+ +L+SL++FL +
Sbjct: 349 LHSVKWNRIILDEAHYIKERRSNTARAVFALEATYRWALSGTPLQNRVGELYSLIRFLQI 408
Query: 676 EPWS-----------------------------HINYWKRYVSVP------FEKGNYAQA 700
P+S H +W +YV+ P F G A
Sbjct: 409 RPYSYYFCKDCDCRILDYVAHQSCPHCPHNAVRHFCWWNKYVAKPITVYGSFGLGKRAMI 468
Query: 701 FDVINAVLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENS 760
+ + VL+ +LLRRTK + D ++LPP+ + + + L E Y+S+ ++++
Sbjct: 469 L-LKHKVLKDILLRRTKLGRAAD----LALPPRIITLRRDTLDVKEFDYYESLYKNSQAE 523
Query: 761 VKEGLAKGDLLKNYTNILVHILRLRQVCCHLDLLKKTXXXXXXXXXXXXNSTQNISSILM 820
+ G L+ NY +I + RLRQ H L+ NS+
Sbjct: 524 FNTYIEAGTLMNNYAHIFDLLTRLRQAVDHPYLV------------VYSNSS-------- 563
Query: 821 XXXXXXXXXXXXQDKLDALSANFRDIHSASEQLPSFECAICTTECIEPLSAVSITECLHT 880
+AN D + SEQ EC +C +P +T C H
Sbjct: 564 -----------------GANANLVD-ENKSEQ----ECGLCH----DPAEDYVVTSCAHV 597
Query: 881 FCEPCLAEYIEFQQNKKLSINCPYCRMPISEANVLKLKEPIDAER----GYELISFHSHF 936
FC+ CL I F + + CP C ++ K A + G+ S +
Sbjct: 598 FCKACL---IGFSASLG-KVTCPTCSKLLTVDWTTKADTEHKASKTTLKGFRASSILNRI 653
Query: 937 Q------STKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYK 990
+ STKI+AL ++ + E + IVFSQF+SFLD++ L + V +
Sbjct: 654 KLDDFQTSTKIEALREEIRFMVERDGSAKAIVFSQFTSFLDLINYTLG----KCGVSCVQ 709
Query: 991 FDGRLDMKERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMED 1050
G + M R + +F GGV LNLT AS FMMDPWW+P +E
Sbjct: 710 LVGSMTMAARDTAINKFKEDPDCRVFLMSLKA--GGVALNLTVASHVFMMDPWWNPAVER 767
Query: 1051 QAIDRIHRIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGDIVEGDEAERRQKRIEE 1108
QA DRIHRIGQ + ++VVRFII+N+VEE++LR+Q++K ++ + G E K EE
Sbjct: 768 QAQDRIHRIGQYKPIRVVRFIIENTVEERILRLQKKKELVFEGTVGGSQEAIGKLTEE 825
>Hs19923174 [KL] KOG4439 RNA polymerase II transcription termination factor
TTF2/lodestar DEAD-box superfamily
Length = 1162
Score = 169 bits (427), Expect = 3e-41
Identities = 117/366 (31%), Positives = 181/366 (48%), Gaps = 71/366 (19%)
Query: 479 GGILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKH 538
GGILAD+MGLGKT++ +ALI T E E+K +ST + S+ DS
Sbjct: 591 GGILADDMGLGKTLTMIALILTQKNQEKKEEKEKSTALTWL----SKDDSCD-------- 638
Query: 539 DTYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKDLRAYVLGPNAPSVII 598
+ TLI+ P SL++ W++E EK K R +Y+G N +D RA VL + ++I
Sbjct: 639 --FTSHGTLIICPASLIHHWKNEVEKRVNSNKLRVYLYHGPN-RDSRARVL--STYDIVI 693
Query: 599 TTYGIIQSEYGRT---------------STSGLFNVVFFRIILDEGHTIRNRSTRTSKAV 643
TTY ++ E +++ L + + RIILDE H ++N +TS AV
Sbjct: 694 TTYSLVAKEIPTNKQEAEIPGANLNVEGTSTPLLRIAWARIILDEAHNVKNPRVQTSIAV 753
Query: 644 IALRSSRKWILTGTPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQAFDV 703
L++ +W +TGTPI N L D++SL++FL P+ N W+ V +KG +
Sbjct: 754 CKLQACARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEFNLWRSQVDNGSKKGG-----ER 808
Query: 704 INAVLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKE 763
++ + + +LLRRTK+ D G+PLV LP ++ + L+LS E+ VY + ++++
Sbjct: 809 LSILTKSLLLRRTKDQLDSTGRPLVILPQRKFQLHHLKLSEDEETVYNVFFARSRSALQS 868
Query: 764 GLAKGDLLKNYT----------------------------------NILVHILRLRQVCC 789
L + + N + +IL +LRLRQ CC
Sbjct: 869 YLKRHESRGNQSGRSPNNPFSRVALEFGSEEPRHSEAADSPRSSTVHILSQLLRLRQCCC 928
Query: 790 HLDLLK 795
HL LLK
Sbjct: 929 HLSLLK 934
Score = 110 bits (274), Expect = 2e-23
Identities = 60/188 (31%), Positives = 108/188 (56%), Gaps = 7/188 (3%)
Query: 927 YELISFHSHFQSTKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQV 986
+++ F +STKI +LL L+ IQ S ++ ++ SQ+++ L ++ + L+ H +
Sbjct: 979 FKMELFEGMRESTKISSLLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKKH----GL 1034
Query: 987 IIYKFDGRLDMKERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSP 1046
DG ++ K+R ++E F+ GGVGLNLT + F++D W+P
Sbjct: 1035 TYATIDGSVNPKQRMDLVEAFNHSRGPQVMLISLLA--GGVGLNLTGGNHLFLLDMHWNP 1092
Query: 1047 GMEDQAIDRIHRIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLG-DIVEGDEAERRQKR 1105
+EDQA DRI+R+GQQ+ V + RF+ + +VEEK+L++QE+K+ L ++ G +
Sbjct: 1093 SLEDQACDRIYRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVLSGSGESVTKLT 1152
Query: 1106 IEEIQMLF 1113
+ +++LF
Sbjct: 1153 LAHLRVLF 1160
>7298962 [KL] KOG4439 RNA polymerase II transcription termination factor
TTF2/lodestar DEAD-box superfamily
Length = 965
Score = 163 bits (412), Expect = 2e-39
Identities = 206/861 (23%), Positives = 347/861 (39%), Gaps = 141/861 (16%)
Query: 332 QPVYGDTKNEMIPNYQENTVSSSQFQDEALNI-NQLKSFYRITQSAASLQNLPETTPDES 390
QP + + + + Q+ +++QF NI + LK+ Y Q ++ +L + +
Sbjct: 167 QPKWSNLYSGLNRYRQKANHTAAQFYQHKSNIIDSLKTLYEPIQPRPAIDDLEK---QPA 223
Query: 391 LFKLQLRRYQKQSLSWMLKREYEYSHLSEKAAEVSIDGN-SMNPLWKKFRWPSNSKQGTP 449
L ++L ++Q+ L WM RE + A ++ + SM L N K+
Sbjct: 224 LLLVRLLKHQQSCLKWMQFRERQKISGGILADDMGLGKTLSMIALILASEETKNRKR--- 280
Query: 450 NHEDDCFFYANLYTGEFSIEKPVIKTIINGGILADEMGLGKT------------------ 491
E+ +T EF+ + K I + DE GK
Sbjct: 281 --EEKKKALTLKWTQEFN--RVYCKEIRKISMFDDEEESGKEEEQYEPPEKRTCHVKTKK 336
Query: 492 ISALALICTASYDEAHEKKIESTKKPSM-KEMSSQVDSSPLRHSQHKHDTYAYRTTLIVV 550
I+ ++ D + +E +K + K +V SS + Y TL+V
Sbjct: 337 INQFRILDDDDNDAGDKAVVEDEQKDLLAKTPEPEVFSSDEEEEHLSNGRYPSANTLVVC 396
Query: 551 PMSLLNQWQSEFEKANKDLKKRCEIYYGNN-----IKDLRAYVLGPNAPSVIITTYGIIQ 605
PMS++ QW E R ++G N I+ R+Y L +IT+Y ++
Sbjct: 397 PMSVMCQWAHEVASKVAQNAIRVLTFHGPNRHEIGIEAFRSYDL-------VITSYNLVV 449
Query: 606 SEYGRT-STSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWILTGTPIINRLD 664
+E R +TS LF V + R+ILDE H IRN T +V LR+ W LTGTP+ NR
Sbjct: 450 NELKRYGNTSPLFAVYWNRVILDEAHIIRNSKTNCCNSVCQLRAHCHWALTGTPVQNRGV 509
Query: 665 DLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQAFDVINAVLEPVLLRRTKNMKDVDG 724
D+F+L++F+N+ + + WK+ ++ +N +++P++LRRTK G
Sbjct: 510 DVFALLRFVNVPNFQDLQQWKKNLN------ESMLGHRRLNFIIKPLMLRRTKQKLQASG 563
Query: 725 KPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGL---AKGDLLKNYTN----- 776
+ +LP ++ + +QLS +E VYQ + ++ + L KG+ NY +
Sbjct: 564 -DMPALPSLKIELICVQLSKTEMAVYQILSAISKKIFTQFLLQREKGNSDLNYYSLERTP 622
Query: 777 -----------------------------------ILVHILRLRQVCCHLDLLKKTXXXX 801
ILV +LRLRQ CCH L+
Sbjct: 623 QFIAGHMSDERYNEIYERFLKSLGYNPGEKILGIYILVLLLRLRQFCCHPGLM-----IG 677
Query: 802 XXXXXXXXNSTQNISSILMXXXXXXXXXXXXQDKLDALSANFRDIHSASEQLPSFECAIC 861
QN+ Q K+D L+ +L F+
Sbjct: 678 MLRGALTAEDVQNVK--------VDASDVEGQLKMDVLA-----------ELDKFDETDS 718
Query: 862 TTECI--EPLSAVSITECLHTFCEPCLAEYIEFQQNKKLSINCPYCRMPISEANVLKLKE 919
+C E + L + E + + L + + A LKL
Sbjct: 719 EDDCCDEEDSTRRDGNFKLEVIKDEIKEENVPWDSGDDLPTASSF-EDQLDSARALKLLN 777
Query: 920 PIDAERGYELISFHSHFQSTKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRS 979
P + F S K+K ++ L+++ T ++IIV SQ+ S+L I +R
Sbjct: 778 PQNP-------IFQFIRPSAKLKMVIDKLEELL-TGTNDKIIVTSQWVSYLAI----VRK 825
Query: 980 HLPRDQVIIYKFDGRLDMKERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFM 1039
L F+G+L KER +L F+ GGVGLNL A+ +
Sbjct: 826 RLQDLSWETLDFNGQLTAKEREIVLRDFN--ANNEKRVLLLSLTAGGVGLNLNVANHMLI 883
Query: 1040 MDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGDIVEGDEA 1099
+D W+P +E QA DRI+R GQ + + R++ ++VE+++ +Q+ K + +V +E
Sbjct: 884 VDLHWNPQLERQAQDRIYRYGQTKPTFIYRYMCQDTVEQRIKSLQDCKLEIAKVVLPEEG 943
Query: 1100 ERRQK------RIEEIQMLFQ 1114
K + E++ LF+
Sbjct: 944 GEVTKCVGGGLNLAELKKLFE 964
>YBR114w [L] KOG1002 Nucleotide excision repair protein RAD16
Length = 790
Score = 156 bits (394), Expect = 2e-37
Identities = 111/374 (29%), Positives = 182/374 (47%), Gaps = 102/374 (27%)
Query: 474 KTIINGGILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRH 533
++I GG+LADEMG+GKTI +AL+ + TK PS
Sbjct: 200 ESIYAGGVLADEMGMGKTIQTIALLMN-----------DLTKSPS--------------- 233
Query: 534 SQHKHDTYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYG----NNIKDLRAYVL 589
L+V P L QW++E E+ K K IY+G +IKDL+ Y
Sbjct: 234 -------------LVVAPTVALMQWKNEIEQHTKGQLK-IYIYHGASRTTDIKDLQGY-- 277
Query: 590 GPNAPSVIITTYGIIQS-----EYGRTSTSGLF-------NVVFFRIILDEGHTIRNRST 637
V++TTY +++S YG +GLF N+ F+R+ILDE H I++R +
Sbjct: 278 -----DVVLTTYAVLESVFRKQNYGFRRKNGLFKQPSVLHNIDFYRVILDEAHNIKDRQS 332
Query: 638 RTSKAVIALRSSRKWILTGTPIINRLDDLFSLVQFLNLEPWS------------------ 679
T++AV L++ ++W L+GTP+ NR+ +++SL++FLN+ P++
Sbjct: 333 NTARAVNNLKTQKRWCLSGTPLQNRIGEMYSLIRFLNINPFTKYFCTKCDCASKDWKFTD 392
Query: 680 -------------HINYWKRYVSVPFEK----GNYAQAFDVINAVLEPVLLRRTKNMKDV 722
H N++ ++ +K G ++F+ I +L+ ++LRRTK V
Sbjct: 393 RMHCDHCSHVIMQHTNFFNHFMLKNIQKFGVEGPGLESFNNIQTLLKNIMLRRTK----V 448
Query: 723 DGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGLAKGDLLKNYTNILVHIL 782
+ + LPP+ V V + + EK +Y+S+ D++ + +G +L NY NI I
Sbjct: 449 ERADDLGLPPRIVTVRRDFFNEEEKDLYRSLYTDSKRKYNSFVEEGVVLNNYANIFTLIT 508
Query: 783 RLRQVCCHLDLLKK 796
R+RQ+ H DL+ K
Sbjct: 509 RMRQLADHPDLVLK 522
Score = 136 bits (342), Expect = 2e-31
Identities = 84/262 (32%), Positives = 138/262 (52%), Gaps = 16/262 (6%)
Query: 858 CAICTTECIEPLSAVSITECLHTFCEPCLAEYIEFQQNKKLSINCPYCRMPIS-EANVLK 916
C +C E EP+ + +C H FC C+ EY+E + CP C + +S + +
Sbjct: 537 CQLCNDEAEEPIES----KCHHKFCRLCIKEYVESFMENNNKLTCPVCHIGLSIDLSQPA 592
Query: 917 LKEPIDAERGYELIS---FHSHFQS-TKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDI 972
L+ +D+ + ++S +QS TKI+AL+ L +++ + IVFSQF+S LD+
Sbjct: 593 LEVDLDSFKKQSIVSRLNMSGKWQSSTKIEALVEELYKLRSNKRTIKSIVFSQFTSMLDL 652
Query: 973 LEIELRSHLPRDQVIIYKFDGRLDMKERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLT 1032
+E L+ R K G + +R ++ F GGV LNL
Sbjct: 653 VEWRLK----RAGFQTVKLQGSMSPTQRDETIKYF--MNNIQCEVFLVSLKAGGVALNLC 706
Query: 1033 CASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSVEEKMLRIQERK-RMLG 1091
AS+ F++DPWW+P +E Q+ DR+HRIGQ + VK+ RF I++S+E +++ +QE+K M+
Sbjct: 707 EASQVFILDPWWNPSVEWQSGDRVHRIGQYRPVKITRFCIEDSIEARIIELQEKKANMIH 766
Query: 1092 DIVEGDEAERRQKRIEEIQMLF 1113
+ DEA + ++Q LF
Sbjct: 767 ATINQDEAAISRLTPADLQFLF 788
>7298963 [KL] KOG4439 RNA polymerase II transcription termination factor
TTF2/lodestar DEAD-box superfamily
Length = 1061
Score = 156 bits (394), Expect = 2e-37
Identities = 115/358 (32%), Positives = 182/358 (50%), Gaps = 54/358 (15%)
Query: 479 GGILADEMGLGKTISALA-LICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHK 537
GGILAD+MGLGKT++ ++ ++ + E E K ES+ S + + + S S+ +
Sbjct: 460 GGILADDMGLGKTLTMISSVLACKNGQEMSEGKDESSDSDSEDDKNKKRKSVTGWKSKGR 519
Query: 538 HDTYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKDLRAYVLGPNAPSVI 597
DT TL+V P SLL QW+SE E K +++GNN + Y+ + ++
Sbjct: 520 KDTRR-GGTLVVCPASLLRQWESEVESKVSRQKLTVCVHHGNNRETKGKYLRDYD---IV 575
Query: 598 ITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWILTGT 657
+TTY I+ E+ S S +F V + RIILDE H +RN +++S AV LR +W LTGT
Sbjct: 576 VTTYQIVAREH--KSLSAVFGVKWRRIILDEAHVVRNHKSQSSLAVCDLRGKYRWALTGT 633
Query: 658 PIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQAFDVINAVLEPVLLRRTK 717
PI N+ D+++L++FL P+ ++ WK+++ A + +N +++ ++LRRTK
Sbjct: 634 PIQNKELDVYALLKFLRCSPFDDLHTWKKWID-----NKSAGGQNRLNLLMKSLMLRRTK 688
Query: 718 NMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSML----------------------- 754
DGK L SLP KE+ + ++ L E VYQ+++
Sbjct: 689 AQLQSDGK-LNSLPNKELRLIEISLDKEEMNVYQTVMTYSRTLFAQFLHQRAERETDFNY 747
Query: 755 -EDAE----NSVKE-------------GLAKGDLLKNYTNILVHILRLRQVCCHLDLL 794
DA N +K+ +A +ILV +LRLRQ+CCH L+
Sbjct: 748 RSDANKPTYNQIKDPNGAYYKMHEKFARMAGSKKEVKSHDILVLLLRLRQICCHPGLI 805
Score = 95.1 bits (235), Expect = 5e-19
Identities = 64/208 (30%), Positives = 109/208 (51%), Gaps = 15/208 (7%)
Query: 906 RMPISEANVLKLKEPIDAERGYELISFHSHFQSTKIKALLRHLKQIQETSPGEQIIVFSQ 965
R+ + N+LK P+ F+ H S+KI +++ LK S ++ IV SQ
Sbjct: 867 RIAKASKNLLKRSNPV----------FNLHRPSSKINMVIQILKTSILKSSDDKAIVVSQ 916
Query: 966 FSSFLDILEIELRSHLPRDQVIIYKFDGRLDMKERTRILEQFHXXXXXXXXXXXXXXXTG 1025
++S LDIL R HL +D V +G + +K R I+ +F+ G
Sbjct: 917 WTSVLDIL----RDHLSKDGVATLSLNGTIPVKNRQDIVNEFNDRNNQKRVLLLSLTA-G 971
Query: 1026 GVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSVEEKMLRIQE 1085
GVGLNL A+ ++D W+P +E QA DRI+R+GQ++ V + +F+ ++VE+++ +Q+
Sbjct: 972 GVGLNLIGANHLLLLDLHWNPQLEAQAQDRIYRVGQKKNVIIYKFMCVDTVEQRIKGLQD 1031
Query: 1086 RKRMLGDIVEGDEAERRQKRIEEIQMLF 1113
+K L D V + I++++ LF
Sbjct: 1032 KKLDLADGVLTGAKVSSKLTIDDLKGLF 1059
>CE11083 [KL] KOG4439 RNA polymerase II transcription termination factor
TTF2/lodestar DEAD-box superfamily
Length = 1091
Score = 149 bits (375), Expect = 3e-35
Identities = 118/383 (30%), Positives = 180/383 (46%), Gaps = 84/383 (21%)
Query: 479 GGILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKH 538
GGILAD+MGLGKT+S ++LI AH+K ++ E + R +
Sbjct: 492 GGILADDMGLGKTLSMISLI-------AHQKAARRARR----EDGNDDKDKEKRKVVKEQ 540
Query: 539 DTYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNI-KDLRAYVLGPNAPSVI 597
TLIV P SL++QW +E ++ D +++G +D+ A L V+
Sbjct: 541 GLIPSNGTLIVAPASLIHQWDAEIDRRLDDSVLSTYMFHGTKKQRDIDARRLARY--DVV 598
Query: 598 ITTYGIIQSEY---------------GRTST-------------SGLFNVVFFRIILDEG 629
ITT+ +I +E G + + S L + + R+ILDE
Sbjct: 599 ITTFNLIANELIEKIRTKSKADDSSDGESDSNHTGIRRAVGKDDSVLAQICWSRVILDEA 658
Query: 630 HTIRNRSTRTSKAVIALRSSRKWILTGTPIINRLDDLFSLVQFLNLEPWSHINYWKRYVS 689
HTI+NR + SKAV L + +W L+GTPI N L DL+SLV+FL + P+S YWK +
Sbjct: 659 HTIKNRQSLASKAVCRLSAFSRWCLSGTPIHNNLWDLYSLVRFLRIRPFSDDKYWKESI- 717
Query: 690 VPFEKGNYAQAFDVINAVLEPVLLRRTKNMK-DVDGKPLVSLPPKEVIVEKLQLSSSEKR 748
+P + D +N + + +LLRRTK+ V + LV LPPK V V +L+L E +
Sbjct: 718 MPMK----PIMADRVNLLTKNLLLRRTKDQTCAVTNQKLVQLPPKNVEVHELELDGDEAQ 773
Query: 749 VYQSMLEDAENSVKEGLAKGDLLKNY---------------------------------- 774
Y+ M+E A+ VK+ L + +KN+
Sbjct: 774 AYEIMMEAAKKFVKKLLQDSNDMKNHGFIPRRNRRAGKEGEVQNPFNFGPRDLAAGSNFE 833
Query: 775 --TNILVHILRLRQVCCHLDLLK 795
+ +L+ +LRLRQ C H ++ K
Sbjct: 834 KMSCVLMLLLRLRQACVHFNITK 856
Score = 85.5 bits (210), Expect = 4e-16
Identities = 55/184 (29%), Positives = 100/184 (53%), Gaps = 9/184 (4%)
Query: 932 FHSHFQSTKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKF 991
F + S KIK L ++ I E E++++ SQ++S L+++EI ++S + I
Sbjct: 910 FDPDYLSCKIKNTLEIVENIMEKK--EKVVIVSQWTSVLNLIEIHIKSSGFKYTSIT--- 964
Query: 992 DGRLDMKERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQ 1051
G++ +K+R ++ F+ GGVGLNLT + M+D W+P +E Q
Sbjct: 965 -GQVLVKDRQERVDSFNREKGGARVMLLSLAA-GGVGLNLTGGNHLVMVDLHWNPALEQQ 1022
Query: 1052 AIDRIHRIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGDIVEGDEAERRQKRI--EEI 1109
A DRI+R+GQ++ V + R + ++E++++ +Q+ K L V A R+ ++ +I
Sbjct: 1023 AFDRIYRMGQKKDVFIHRLVTKGTIEQRVVMLQKDKVALASSVLDGNATRKMNKLTTADI 1082
Query: 1110 QMLF 1113
+MLF
Sbjct: 1083 KMLF 1086
>At3g16600 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 638
Score = 137 bits (345), Expect = 9e-32
Identities = 124/449 (27%), Positives = 189/449 (41%), Gaps = 114/449 (25%)
Query: 479 GGILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKH 538
GGILAD+ GLGKTIS ++LI +K++S K Q K
Sbjct: 76 GGILADDQGLGKTISTISLILL--------QKLKSQSK------------------QRKR 109
Query: 539 DTYAYRTTLIVVPMSLLNQWQSEF-EKANKDLKKRCEIYYGNN-IKDLRAYVLGPNAPSV 596
TLIV P S++ QW E EK + + K +++G++ KD + V
Sbjct: 110 KGQNSGGTLIVCPASVVKQWAREVKEKVSDEHKLSVLVHHGSHRTKDPTEIAIY----DV 165
Query: 597 IITTYGIIQSEY-------------GRTSTSG----------LFNVVFFRIILDEGHTIR 633
++TTY I+ +E GR S G L V + R++LDE HTI+
Sbjct: 166 VMTTYAIVTNEVPQNPMLNRYDSMRGRESLDGSSLIQPHVGALGRVRWLRVVLDEAHTIK 225
Query: 634 NRSTRTSKAVIALRSSRKWILTGTPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFE 693
N T +KA +LR+ R+W LTGTPI N++DDL+S +FL P++ N + + + P +
Sbjct: 226 NHRTLIAKACFSLRAKRRWCLTGTPIKNKVDDLYSYFRFLRYHPYAMCNSFHQRIKAPID 285
Query: 694 KGNYAQAFDVINAVLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSM 753
K + + A+L ++LRRTK KL+L+S K
Sbjct: 286 K-KPLHGYKKLQAILRGIMLRRTKEWS---------------FYRKLELNSRWK------ 323
Query: 754 LEDAENSVKEGLAKGDLLKNYTNILVHILRLRQVCCHLDLLKKTXXXXXXXXXXXXNSTQ 813
+E A G L ++ +LV +LRLRQ C H L+
Sbjct: 324 -------FEEYAADGTLHEHMAYLLVMLLRLRQACNHPQLVNGYSHSDTTRKMSDGVRVA 376
Query: 814 NISSILMXXXXXXXXXXXXQDKLDALSANFRDIHSASEQLPSFECAICTTECIEPLSAVS 873
+++M LD L +L S C++C+ +P+
Sbjct: 377 PRENLIMF--------------LDLL------------KLSSTTCSVCSDPPKDPV---- 406
Query: 874 ITECLHTFCEPCLAEYIEFQQNKKLSINC 902
+T C H FC C++ I N ++NC
Sbjct: 407 VTLCGHVFCYECVSVNINGDNNTCPALNC 435
Score = 78.6 bits (192), Expect = 5e-14
Identities = 35/64 (54%), Positives = 45/64 (69%)
Query: 1025 GGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSVEEKMLRIQ 1084
G +GLN+ AS ++D WW+P EDQAIDR HRIGQ + V V R I N+VEE++L +
Sbjct: 517 GNLGLNMVAASHVILLDLWWNPTTEDQAIDRAHRIGQTRAVTVTRIAIKNTVEERILTLH 576
Query: 1085 ERKR 1088
ERKR
Sbjct: 577 ERKR 580
>CE14110 [KL] KOG4439 RNA polymerase II transcription termination factor
TTF2/lodestar DEAD-box superfamily
Length = 1026
Score = 135 bits (339), Expect = 5e-31
Identities = 108/387 (27%), Positives = 170/387 (43%), Gaps = 92/387 (23%)
Query: 478 NGGILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHK 537
+GGILAD+MGLGKT+S L+LI H+K +K E R +
Sbjct: 409 SGGILADDMGLGKTLSMLSLI-------VHQKAARRARK----ESGDNAADKEKRRVAKE 457
Query: 538 HDTYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNI------KDLRAYVLGP 591
Y TLI+ P SL++QW++E + + +++G K+L Y
Sbjct: 458 EGLYPSNGTLIIAPASLIHQWEAEINRRLESDLLSVFMFHGTKKQRQIEPKELARY---- 513
Query: 592 NAPSVIITTYGIIQSEYGRTSTSG---------------------------LFNVVFFRI 624
V+ITTY + +E +G L V + R+
Sbjct: 514 ---DVVITTYTLAANELMEKKAAGSKKEEDSDDESENEENPRRPAGKNDSPLARVAWSRV 570
Query: 625 ILDEGHTIRNRSTRTSKAVIALRSSRKWILTGTPIINRLDDLFSLVQFLNLEPWSHINYW 684
ILDE H I+NR ++ SKAV L S +W L+GTPI N L DL+SLV+FL + + +W
Sbjct: 571 ILDEAHAIKNRLSQCSKAVCRLSSFSRWCLSGTPIHNNLWDLYSLVRFLRIPLFGDRKFW 630
Query: 685 KRYVSVPFEKGNYAQAFDVINAVLEPVLLRRTKNMK-DVDGKPLVSLPPKEVIVEKLQLS 743
+ +P + G D +N + + ++LRRTK+ + + K +V+L K++ + +L++
Sbjct: 631 AESI-MPMKTG----MADRVNLLTKNLMLRRTKDQQCALTNKKIVNLKEKKIEIHELEMV 685
Query: 744 SSEKRVYQSMLEDAENSVKE-----------------------------------GLAKG 768
E Y M+E A+ VK+ LA
Sbjct: 686 GDEANGYAIMMEAAQKLVKQIVTNTDDIQKYGQIRRRRQRGNDDEFANPYNVGPRNLAGN 745
Query: 769 DLLKNYTNILVHILRLRQVCCHLDLLK 795
+N + IL+ ++RLRQ C H + K
Sbjct: 746 SNFQNMSCILLLLMRLRQACVHFHITK 772
Score = 76.6 bits (187), Expect = 2e-13
Identities = 54/192 (28%), Positives = 97/192 (50%), Gaps = 17/192 (8%)
Query: 932 FHSHFQSTKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKF 991
F F S K+ L +++I E E++++ SQ++S L+++E H+
Sbjct: 833 FEPDFISCKMAKTLEVVREILEKK--EKVVIVSQWTSVLNLVE----KHIQAGGHNYTSI 886
Query: 992 DGRLDMKERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQ 1051
G++ +K+R ++ F+ GGVGLNL + M+D W+P +E Q
Sbjct: 887 TGQVLVKDRQERVDSFNQEKGGAQVMLLSLTA-GGVGLNLIGGNHLIMVDLHWNPALEQQ 945
Query: 1052 AIDRIHRIGQQQTV--------KVVRFIIDNSVEEKMLRIQERKRML-GDIVEGDEAERR 1102
A DRI+R+GQ++ V K R I+ ++E++++ +QE+K L ++EG +
Sbjct: 946 ACDRIYRMGQKKEVFIHRLNISKFCRLIVKGTIEQRVMDLQEKKLALAASVLEGTATRKL 1005
Query: 1103 QK-RIEEIQMLF 1113
K +I+MLF
Sbjct: 1006 NKLTTADIRMLF 1017
>At1g02670 [L] KOG1002 Nucleotide excision repair protein RAD16
Length = 678
Score = 117 bits (292), Expect = 1e-25
Identities = 97/326 (29%), Positives = 158/326 (47%), Gaps = 54/326 (16%)
Query: 477 INGGILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQH 536
+ GGILADEMG+GKTI A++L+ +VD + R
Sbjct: 153 VRGGILADEMGMGKTIQAISLVLARR----------------------EVDRAKSRE--- 187
Query: 537 KHDTYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYG----NNIKDLRAYVLGPN 592
A TL++VP L+QW E + R Y+G N++ L Y
Sbjct: 188 -----AVGHTLVLVPPVALSQWLDEISRLTSPGSTRVLQYHGPKRDKNVQKLMNY----- 237
Query: 593 APSVIITTYGIIQSEYGRT-----STSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALR 647
++TT I+++EY + + S L ++ + RII+DE H I+NRS+RT+KAV AL
Sbjct: 238 --DFVLTTSPIVENEYRKDEGVDETMSPLHSIKWNRIIVDEAHDIKNRSSRTAKAVFALE 295
Query: 648 SSRKWILTGTPIINRLDDLFSLV--QFLNLEPWSHINYWKRYVSVPFEKGNYAQAFDVIN 705
++ +W L+GTP+ N +D+L+SLV FLN ++ ++ R+ + F + N F +
Sbjct: 296 ATYRWALSGTPLQNDVDELYSLVSYSFLNFFYSTYASFAFRHTHITFAR-NVTVKFLIGG 354
Query: 706 AVLEPVLLRRTKNMKDVDGKPL-VSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEG 764
+L + R +N+ V + SL K + LS E Y+S+ + ++ +
Sbjct: 355 NILPLSIPVRIENVPAVLIMQINTSLGGK----RRDALSVVEADFYESLYKVSKTTFDGY 410
Query: 765 LAKGDLLKNYTNILVHILRLRQVCCH 790
+ G L+ NY +I ++RLRQ H
Sbjct: 411 IQAGTLMNNYAHIFGLLIRLRQAVDH 436
Score = 114 bits (285), Expect = 9e-25
Identities = 70/178 (39%), Positives = 101/178 (56%), Gaps = 8/178 (4%)
Query: 938 STKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDM 997
STKI+AL ++ + E + IVFSQF+SFLD++ L + V + G +
Sbjct: 506 STKIEALREEIRFMVERDWSAKAIVFSQFTSFLDLISYALG----KSGVSCVQLVGSMSK 561
Query: 998 KERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIH 1057
+ L+ F GGV LNLT AS FMMDPWW+P +E QA DRIH
Sbjct: 562 AAKDAALKNFKEEPDCRVLLMSLQA--GGVALNLTAASHVFMMDPWWNPAVERQAQDRIH 619
Query: 1058 RIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGDIVEGDEAERRQKRI--EEIQMLF 1113
RIGQ + V+VVRFI++ +VEEK+L +Q++K L + GD E +++ ++I+ LF
Sbjct: 620 RIGQCKPVRVVRFIMEKTVEEKILTLQKKKEDLFESTLGDSEEAVVQKLGEDDIKSLF 677
>SPAC13G6.01c [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 104
Score = 107 bits (266), Expect = 1e-22
Identities = 49/90 (54%), Positives = 70/90 (77%)
Query: 1025 GGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSVEEKMLRIQ 1084
GGVGLNLTCA+ F+MDPWWS +E QAIDRIHR+GQ++ V V R+I+ ++VEE+ML+IQ
Sbjct: 14 GGVGLNLTCANHVFIMDPWWSWSVEAQAIDRIHRLGQEKPVFVTRYIVRDTVEERMLKIQ 73
Query: 1085 ERKRMLGDIVEGDEAERRQKRIEEIQMLFQ 1114
ERK + + E +++ + IE+I+MLF+
Sbjct: 74 ERKNFITGTLGMSEGKQQVQSIEDIKMLFE 103
>SPAC144.05 [L] KOG0298 DEAD box-containing helicase-like transcription
factor/DNA repair protein
Length = 1375
Score = 102 bits (255), Expect = 3e-21
Identities = 112/443 (25%), Positives = 187/443 (41%), Gaps = 75/443 (16%)
Query: 369 FYRITQSAASLQNLPETTPDESLFKLQLRRYQKQSLSWMLKREYEYSHLSEKAAEVSIDG 428
FY + A + D L +L +Q + L WM +RE E +
Sbjct: 192 FYDCARKLAKSLRFANVSRDPRLSS-ELLPFQMRVLEWMKRRE----------EEKFLTS 240
Query: 429 NSMNPLWKKFRWPSNSKQGTPNHEDDCFFYANLYTG--EFSIEKPVIKTI--INGGILAD 484
N + PLW + + DD Y N G FS EK + I GGILAD
Sbjct: 241 NDLPPLWYHCK----------SLFDDRMVYVNHVYGYMTFSKEKTYLLASGDIRGGILAD 290
Query: 485 EMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHDTYAYR 544
EMG+GKT+ L L+ H+ I T + QV +++S +
Sbjct: 291 EMGMGKTLEVLGLVLH------HQLPISLTDTCTF----DQVVGKNVKYS---------K 331
Query: 545 TTLIVVPMSLLNQWQSEFEKANKDLK--KRCEIYYGNNIKDLRAYVLGPNAPSVIITTYG 602
TLI+ P ++L+QW SE + LK I N +K + ++ +++T+Y
Sbjct: 332 ATLIITPSTILDQWLSEIDLHVPSLKVFHYQGIRKSNGLKSAKIFL----DCDIVVTSYS 387
Query: 603 IIQSEYGRTST---------------SGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALR 647
++ E T + S L +V ++RI +DE + + ++ + +
Sbjct: 388 DLRFELLYTESHSRTLRHEKRHVSPKSPLIDVCWWRICVDEAQMVETSQSNVAQMIYRIP 447
Query: 648 SSRKWILTGTPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQAFDVINAV 707
W ++GTP+ + +DDLF L+ L P Y K+ EK + D+ +
Sbjct: 448 RVNCWTVSGTPVRSEVDDLFGLLFLLRYSPM--YLYKKQAWMQIIEKKRVREFCDLFGS- 504
Query: 708 LEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGLAK 767
++ R +K +DV+ + + LPP+ I +LS E+ YQ +L +A S+ +
Sbjct: 505 ---LVCRHSK--QDVEEE--LKLPPQHRICMTTRLSVVEETNYQDLLSEAAKSLHFFKDR 557
Query: 768 GDLLKNYTNILVHILRLRQVCCH 790
L + ++ ++RLRQ CCH
Sbjct: 558 NLDLCDEESMRRWLVRLRQACCH 580
Score = 79.0 bits (193), Expect = 4e-14
Identities = 62/246 (25%), Positives = 107/246 (43%), Gaps = 39/246 (15%)
Query: 865 CIEPLSAVSITECLHTFCEPCLAEYIEFQQNKKLSINCPYCRMPISEANVLKLKEPIDA- 923
C + + IT C H +C CL ++ K S +CP C+ +++ N + E D
Sbjct: 1095 CRDIIKQGFITTCGHLYCSFCLEAWL------KHSSSCPMCKTKLNKNNAYYIGESRDIY 1148
Query: 924 --------------------ERGYELISFHSHFQS--TKIKALLRHLKQIQETSPGEQII 961
+ Y IS +S +KI + +HL ++ +++
Sbjct: 1149 SRQEFVTGFNKRDERLEILDDEAYRQISNMELKESFGSKIDTISKHLLYLKHNELYPKVV 1208
Query: 962 VFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDMKERTRILEQFHXXXXXXXXXXXXX 1021
VFSQ+ LD+L ++ ++ +FDG K + L++F
Sbjct: 1209 VFSQWLDVLDVLHKSFEAN----GIVFIRFDG----KSKNTCLKRFKEERSLQVLTLHAR 1260
Query: 1022 XXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSVEEKML 1081
+ G L LT A+ FM +P + G+E QAI R+HRIGQ + V +I++++VE +L
Sbjct: 1261 SQSSG--LTLTNATHVFMCEPLLNSGIEMQAISRVHRIGQTRPTFVYYYIVEDTVEGHIL 1318
Query: 1082 RIQERK 1087
+ K
Sbjct: 1319 NLSLTK 1324
>CE25717 [R] KOG0391 SNF2 family DNA-dependent ATPase
Length = 1933
Score = 96.3 bits (238), Expect = 2e-19
Identities = 92/322 (28%), Positives = 148/322 (45%), Gaps = 58/322 (18%)
Query: 480 GILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHD 539
GILADEMGLGKTI ++L+ AH ES P
Sbjct: 618 GILADEMGLGKTIQTISLL-------AHMACSESIWGPH--------------------- 649
Query: 540 TYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKDLRAYVLGPNAPSVIIT 599
LIVVP S++ W+ EF+K LK + R + PN V IT
Sbjct: 650 -------LIVVPTSVILNWEMEFKKWCPALKILTYFGTAKERAEKRKGWMKPNCFHVCIT 702
Query: 600 TYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWILTGTPI 659
+Y + + + +ILDE I+N ++ +A++ +R+ R+ +LTGTP+
Sbjct: 703 SYKTVTQDIRAFKQRA-----WQYLILDEAQNIKNWKSQRWQALLNVRARRRLLLTGTPL 757
Query: 660 INRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFE---KGNY---AQAFDVINAVLEPVLL 713
N L +L+SL+ FL +S + +K + S P +GN A ++ VL P +L
Sbjct: 758 QNSLMELWSLMHFLMPTIFSSHDDFKDWFSNPLTGMMEGNMEFNAPLIGRLHKVLRPFIL 817
Query: 714 RRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGLAKGDLLKN 773
RR K K+V+ + LP K + LS ++ +Y + + S KE L G+++
Sbjct: 818 RRLK--KEVEKQ----LPEKTEHIVNCSLSKRQRYLYDDFM--SRRSTKENLKSGNMM-- 867
Query: 774 YTNILVHILRLRQVCCHLDLLK 795
++L +++LR+ C H +L +
Sbjct: 868 --SVLNIVMQLRKCCNHPNLFE 887
Score = 81.3 bits (199), Expect = 8e-15
Identities = 45/133 (33%), Positives = 73/133 (54%), Gaps = 6/133 (4%)
Query: 961 IVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDMKERTRILEQFHXXXXXXXXXXXX 1020
++F+Q S LD+L+ L H + ++ DG +++R ++E+F+
Sbjct: 1259 LIFTQMSKMLDVLQTFLSHHGYQ----YFRLDGTTGVEQRQAMMERFNADPKVFCFILST 1314
Query: 1021 XXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSVEEKM 1080
+GGVG+NLT A D W+P M+ QA DR HRIGQ + V + R I + ++EE +
Sbjct: 1315 R--SGGVGVNLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRNVSIYRLISERTIEENI 1372
Query: 1081 LRIQERKRMLGDI 1093
LR +KR LG++
Sbjct: 1373 LRKATQKRRLGEL 1385
>At2g25170 [R] KOG0383 Predicted helicase
Length = 1359
Score = 95.9 bits (237), Expect = 3e-19
Identities = 83/320 (25%), Positives = 157/320 (48%), Gaps = 45/320 (14%)
Query: 481 ILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHDT 540
ILADEMGLGKTI ++AL+ + E P + S LR+ + + T
Sbjct: 295 ILADEMGLGKTIQSIALLASL---------FEENLIPHLVI----APLSTLRNWEREFAT 341
Query: 541 YAYRTTLIVV-----PMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKDLRAYVLGPNAPS 595
+A + +++ +++ + + K K +KK+ + K R
Sbjct: 342 WAPQMNVVMYFGTAQARAVIREHEFYLSKDQKKIKKKKSGQISSESKQKRIKF------D 395
Query: 596 VIITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWILT 655
V++T+Y +I + ++ L + + +I+DEGH ++N+ ++ ++ S+ + +LT
Sbjct: 396 VLLTSYEMINLD-----SAVLKPIKWECMIVDEGHRLKNKDSKLFSSLTQYSSNHRILLT 450
Query: 656 GTPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQAFDVINAVLEPVLLRR 715
GTP+ N LD+LF L+ FL+ + + ++ F+ N + ++ +L P LLRR
Sbjct: 451 GTPLQNNLDELFMLMHFLDAGKFGSLEEFQE----EFKDINQEEQISRLHKMLAPHLLRR 506
Query: 716 TKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGLAKGDLLKNYT 775
K KDV + +PPK+ ++ ++ LSS +K Y+++ + + KG +
Sbjct: 507 VK--KDV----MKDMPPKKELILRVDLSSLQKEYYKAIF---TRNYQVLTKKGGAQISLN 557
Query: 776 NILVHILRLRQVCCHLDLLK 795
NI+ + LR+VCCH +L+
Sbjct: 558 NIM---MELRKVCCHPYMLE 574
Score = 69.7 bits (169), Expect = 2e-11
Identities = 41/157 (26%), Positives = 82/157 (52%), Gaps = 7/157 (4%)
Query: 940 KIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDMKE 999
K++ L + + +++E G ++++++QF LD+LE + + + DG++ E
Sbjct: 596 KLQLLDKMMVKLKEQ--GHRVLIYTQFQHMLDLLE----DYCTHKKWQYERIDGKVGGAE 649
Query: 1000 RTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRI 1059
R +++F+ GG+G+NL A + D W+P + QA+ R HR+
Sbjct: 650 RQIRIDRFNAKNSNKFCFLLSTRA-GGLGINLATADTVIIYDSDWNPHADLQAMARAHRL 708
Query: 1060 GQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGDIVEG 1096
GQ V + R I ++EE+M+++ ++K +L +V G
Sbjct: 709 GQTNKVMIYRLINRGTIEERMMQLTKKKMVLEHLVVG 745
>CE11572 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1465
Score = 95.5 bits (236), Expect = 4e-19
Identities = 82/326 (25%), Positives = 156/326 (47%), Gaps = 65/326 (19%)
Query: 478 NGGILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHK 537
N ILADEMGLGKTI +++L+ + H+
Sbjct: 424 NSSILADEMGLGKTIQSISLLASLF---------------------------------HR 450
Query: 538 HDTYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGN-----NIKDLRAYVLGPN 592
+D L+VVP+S + WQ EF + ++ +Y G+ I+ +V G
Sbjct: 451 YDLAG--PYLVVVPLSTMAAWQKEFAQWAPEMN--LVVYMGDVVSRDMIRQYEWFVGGTK 506
Query: 593 APSV--IITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSR 650
+ I+TTY I+ + + L ++ + +++DE H ++N + K++ R +
Sbjct: 507 KMKINAILTTYEILLKD-----KAFLSSIDWAALLVDEAHRLKNDESLLYKSLTQFRFNH 561
Query: 651 KWILTGTPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQAFDVINAVLEP 710
K ++TGTP+ N L +L++L+ F+ E + + W+ + + E + + ++ LEP
Sbjct: 562 KLLITGTPLQNSLKELWALLHFIMPEKF---DCWEEFETAHNESNH--KGISALHKKLEP 616
Query: 711 VLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGLAKGDL 770
LLRR K KDV+ SLPPK + ++ +++ +K+ Y+ +L + +G+ KG
Sbjct: 617 FLLRRVK--KDVE----KSLPPKTEQILRVDMTAHQKQFYKWILTKNYRELSKGV-KGS- 668
Query: 771 LKNYTNILVHILRLRQVCCHLDLLKK 796
+ + N+ ++ L++ C H L ++
Sbjct: 669 INGFVNL---VMELKKCCNHASLTRQ 691
Score = 70.1 bits (170), Expect = 2e-11
Identities = 42/138 (30%), Positives = 69/138 (49%), Gaps = 5/138 (3%)
Query: 957 GEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDMKERTRILEQFHXXXXXXXX 1016
G ++++FSQ LDIL+ L+ Q + DG + R + L+ ++
Sbjct: 727 GHRVLIFSQMVMMLDILQEYLQLRRFPSQ----RLDGSMRADLRKQALDHYNAPGSTDFA 782
Query: 1017 XXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSV 1076
GG+G+NL A + D W+P + QA+ R HRIGQ +TV + R + SV
Sbjct: 783 FLLSTRA-GGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQTKTVNIYRLVTKGSV 841
Query: 1077 EEKMLRIQERKRMLGDIV 1094
EE+++ +RK +L +V
Sbjct: 842 EEEIVERAKRKLVLDHLV 859
>Hs21071044 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1054
Score = 95.1 bits (235), Expect = 5e-19
Identities = 116/461 (25%), Positives = 207/461 (44%), Gaps = 81/461 (17%)
Query: 338 TKNEMIPNYQENTVSSSQFQDEALNINQLKSFYRITQSAASLQNLPETTPDESLFKLQLR 397
++ EM P Y+E + + E L + Q + F Q +A Q P + + L + +++
Sbjct: 75 SEKEMDPEYEEKMKADRAKRFEFL-LKQTELFAHFIQPSA--QKSPTSPLNMKLGRPRIK 131
Query: 398 RYQKQSLSWMLKREYEYSHLS-EKAAEVSIDGNSMNPLWKKFRWPSNSKQGTPNHEDDCF 456
+ +KQSL + +Y + E+ E+ + + + +F + +G P
Sbjct: 132 KDEKQSL--ISAGDYRHRRTEQEEDEELLSESRKTSNVCIRFEVSPSYVKGGP------- 182
Query: 457 FYANLYTGEFSIEKPVIKTIING--GILADEMGLGKTISALALICTASYDEAHEKKIEST 514
L + +I NG GILADEMGLGKT+ +AL+ + K +
Sbjct: 183 ----LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALL-------GYLKHYRNI 231
Query: 515 KKPSMKEMSSQVDSSPLRHSQHKHDTYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCE 574
P M ++VP S L+ W +EF++ L+ C
Sbjct: 232 PGPHM----------------------------VLVPKSTLHNWMNEFKRWVPSLRVIC- 262
Query: 575 IYYGNNIKDLRAYVLG----PNAPSVIITTYGIIQSEYGRTSTSGLFNVVFFR-IILDEG 629
+ G+ KD RA + P V +T+Y ++ E +F +R +++DE
Sbjct: 263 -FVGD--KDARAAFIRDEMMPGEWDVCVTSYEMVIKE------KSVFKKFHWRYLVIDEA 313
Query: 630 HTIRNRSTRTSKAVIALRSSRKWILTGTPIINRLDDLFSLVQFLNLEPWSHINYWKRYVS 689
H I+N ++ S+ V +S+ + +LTGTP+ N L +L++L+ FL + ++ + + +
Sbjct: 314 HRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFD 373
Query: 690 VPFEKGNYAQAFDVINAVLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRV 749
G+ + + ++AVL+P LLRR K DV+ SLPPK+ I L LS ++
Sbjct: 374 TKNCLGD-QKLVERLHAVLKPFLLRRIKT--DVE----KSLPPKKEIKIYLGLSKMQREW 426
Query: 750 YQSMLEDAENSVKEGLAKGDLLKNYTNILVHILRLRQVCCH 790
Y +L + V K D ++ +L +++LR+ C H
Sbjct: 427 YTKILM-KDIDVLNSSGKMDKMR----LLNILMQLRKCCNH 462
Score = 72.8 bits (177), Expect = 3e-12
Identities = 56/194 (28%), Positives = 94/194 (47%), Gaps = 21/194 (10%)
Query: 933 HSHFQSTKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFD 992
H S K+ L + L +++E G ++++FSQ + LDILE + + D
Sbjct: 480 HIVSNSGKMVVLDKLLAKLKEQ--GSRVLIFSQMTRLLDILE----DYCMWRGYEYCRLD 533
Query: 993 GRLDMKERT------------RILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMM 1040
G+ +ER +E F+ GG+G+NL A +
Sbjct: 534 GQTPHEEREDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRA-GGLGINLASADVVILY 592
Query: 1041 DPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGDIV--EGDE 1098
D W+P ++ QA+DR HRIGQ++ V+V R I DN+VEE+++ E K L IV +G
Sbjct: 593 DSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRL 652
Query: 1099 AERRQKRIEEIQML 1112
+++ ++ + +ML
Sbjct: 653 IDQQSNKLAKEEML 666
>At5g19310 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2
and related ATPases (DNA/RNA helicase superfamily)
Length = 1041
Score = 94.4 bits (233), Expect = 9e-19
Identities = 91/322 (28%), Positives = 148/322 (45%), Gaps = 66/322 (20%)
Query: 480 GILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHD 539
GILADEMGLGKTI +ALI ++S L H H
Sbjct: 384 GILADEMGLGKTIQTIALIAYL------------------------LESKDL-HGPH--- 415
Query: 540 TYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIK--DLRAYVLGPNAPSVI 597
LI+ P ++L W++EF + +Y G+ K ++RA + G +V+
Sbjct: 416 -------LILAPKAVLPNWENEFALWAPSIS--AFLYDGSKEKRTEIRARIAGGKF-NVL 465
Query: 598 ITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAV-IALRSSRKWILTG 656
IT Y +I + + L + + +I+DEGH ++N +K + R R+ +LTG
Sbjct: 466 ITHYDLIMRD-----KAFLKKIDWNYMIVDEGHRLKNHECALAKTLGTGYRIKRRLLLTG 520
Query: 657 TPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQAFD-----VINA---VL 708
TPI N L +L+SL+ FL ++ I+ ++ + + PF + A D +IN V+
Sbjct: 521 TPIQNSLQELWSLLNFLLPHIFNSIHNFEEWFNTPFAECGSASLTDEEELLIINRLHHVI 580
Query: 709 EPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGLAKG 768
P LLRR K+ + LP K ++ K +S+ +K Y+ + + + G K
Sbjct: 581 RPFLLRRKKSEVE------KFLPGKTQVILKCDMSAWQKLYYKQVTDVGRVGLHSGNGKS 634
Query: 769 DLLKNYTNILVHILRLRQVCCH 790
L+N T ++LR+ C H
Sbjct: 635 KSLQNLT------MQLRKCCNH 650
Score = 74.7 bits (182), Expect = 7e-13
Identities = 53/179 (29%), Positives = 93/179 (51%), Gaps = 14/179 (7%)
Query: 938 STKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDM 997
S K + L R L ++++ G +I++FSQ + +D+LEI +L + + + DG
Sbjct: 671 SGKFELLDRLLPKLKKA--GHRILLFSQMTRLIDLLEI----YLSLNDYMYLRLDGSTKT 724
Query: 998 KERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIH 1057
+R +L+QF+ GG+GLNL A + D W+P M+ QA DR H
Sbjct: 725 DQRGILLKQFNEPDSPYFMFLLSTRA-GGLGLNLQTADTIIIFDSDWNPQMDQQAEDRAH 783
Query: 1058 RIGQQQTVKVVRFIIDNSVEEKML-RIQERKRMLGDIVEG------DEAERRQKRIEEI 1109
RIGQ++ V+V + S+EE +L R +++ + +++ A+ R++ +EEI
Sbjct: 784 RIGQKKEVRVFVLVSIGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEI 842
>CE11028 [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26
(contains SNF2 family DNA-dependent ATPase domain)
Length = 1785
Score = 94.0 bits (232), Expect = 1e-18
Identities = 95/326 (29%), Positives = 152/326 (46%), Gaps = 61/326 (18%)
Query: 478 NGGILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHK 537
+GGILADEMGLGKTI ++ + + I+ T + K
Sbjct: 213 SGGILADEMGLGKTIQSVVFL----------RSIQETARTHYK----------------- 245
Query: 538 HDTYAYRTTLIVVPMSLLNQWQSE----FEKANKDLKK------RCEIYYGNNIKDLRAY 587
T T LIV +S++ QW E F KA L R E Y G+ + L+
Sbjct: 246 --TTGLDTALIVCHVSIIAQWIKELNQWFPKARVFLLHSHCSTGRQEDYVGSIFRKLQRR 303
Query: 588 VLGPNAPSVIITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALR 647
++I+TTY + ++ + L+ VV ILDEGH IRN +T+ S A+ L
Sbjct: 304 RKEYPDGAIILTTYSLF-TKLKKPIVKHLWQVV----ILDEGHYIRNENTKCSIAMRKLM 358
Query: 648 SSRKWILTGTPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKG--------NYAQ 699
+++++ILTGTP NRL + + LV F++ S + R + G A+
Sbjct: 359 TTQRFILTGTPFQNRLSEFWKLVDFVHPGRLSDSATFHRNFTHIINAGANLNCSPEAAAK 418
Query: 700 AFDVINAV---LEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLED 756
A++ + A+ ++P++LRR + D K ++ LP K+ IV +LS ++R+Y
Sbjct: 419 AYECLVALHIAVKPLILRRLQE----DHKEVLQLPEKQEIVLSCELSKRQRRLYMEYGNS 474
Query: 757 AE-NSVKEGLAKGDL-LKNYTNILVH 780
+ N + E K + + + TNI H
Sbjct: 475 HQVNEIIERRLKAFVGINHLTNICNH 500
Score = 62.8 bits (151), Expect = 3e-09
Identities = 37/136 (27%), Positives = 67/136 (49%), Gaps = 6/136 (4%)
Query: 955 SPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDMKERTRILEQFHXXXXXX 1014
SP ++I+F+Q + + ++E L + G R +I+++F
Sbjct: 536 SPTNRVILFTQRRTVITMMEY----FLAEKGIKCVSLTGADSAAARPKIIKKFEDDVSIK 591
Query: 1015 XXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDN 1074
GG+GLNLTCA++ + DP W+P ++QA +RI+R+GQ V + R + +
Sbjct: 592 VFLMTTRA--GGLGLNLTCANKVIIFDPDWNPQADNQAKNRIYRMGQTNDVAIYRLVSNG 649
Query: 1075 SVEEKMLRIQERKRML 1090
++E+ Q +K L
Sbjct: 650 TIEDLKFFKQVQKENL 665
>Hs4557565 [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26
(contains SNF2 family DNA-dependent ATPase domain)
Length = 1493
Score = 93.2 bits (230), Expect = 2e-18
Identities = 86/327 (26%), Positives = 136/327 (41%), Gaps = 54/327 (16%)
Query: 479 GGILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKH 538
GGIL DEMGLGKTI +A + SY + R S ++
Sbjct: 527 GGILGDEMGLGKTIQIIAFLAGLSYSKIRT-----------------------RGSNYRF 563
Query: 539 DTYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKDLRAYVLG-PNAPSVI 597
+ T+IV P ++++QW EF + G+ + + ++
Sbjct: 564 EGLG--PTVIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSYTHKKEKLIRDVAHCHGIL 621
Query: 598 ITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWILTGT 657
IT+Y I R + + +ILDEGH IRN + + A R+ + IL+G+
Sbjct: 622 ITSYSYI-----RLMQDDISRYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGS 676
Query: 658 PIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQAFD-----------VINA 706
P+ N L +L+SL F+ + + SVP G Y+ A V+
Sbjct: 677 PMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRD 736
Query: 707 VLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGLA 766
+ P LLRR K+ D K +SLP K V +L+ + +VYQ+ ++ E
Sbjct: 737 TINPYLLRRMKS----DVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFVDSKE-------- 784
Query: 767 KGDLLKNYTNILVHILRLRQVCCHLDL 793
+L I ++ LR++C H DL
Sbjct: 785 VYRILNGEMQIFSGLIALRKICNHPDL 811
Score = 79.7 bits (195), Expect = 2e-14
Identities = 49/157 (31%), Positives = 82/157 (52%), Gaps = 6/157 (3%)
Query: 957 GEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDMKERTRILEQFHXXXXXXXX 1016
G+++++FSQ LDILE+ LR+ + K DG + R ++ +++
Sbjct: 855 GQRVLLFSQSRQMLDILEVFLRAQ----KYTYLKMDGTTTIASRQPLITRYNEDTSIFVF 910
Query: 1017 XXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSV 1076
GG+G+NLT A+R + DP W+P + QA +R RIGQ++ V V R + ++
Sbjct: 911 LLTTR--VGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTI 968
Query: 1077 EEKMLRIQERKRMLGDIVEGDEAERRQKRIEEIQMLF 1113
EEK+ Q K+ L + V D +RR + ++ LF
Sbjct: 969 EEKIYHRQIFKQFLTNRVLKDPKQRRFFKSNDLYELF 1005
>Hs4557449 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1739
Score = 93.2 bits (230), Expect = 2e-18
Identities = 91/325 (28%), Positives = 151/325 (46%), Gaps = 65/325 (20%)
Query: 478 NGGILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHK 537
N ILADEMGLGKTI ++ L + H+
Sbjct: 503 NSVILADEMGLGKTIQTISF---------------------------------LSYLFHQ 529
Query: 538 HDTYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIK--DLRAYVLGPNAP- 594
H Y LIVVP+S L WQ EFE ++ +Y G+ + +R Y +
Sbjct: 530 HQLYG--PFLIVVPLSTLTSWQREFEIWAPEIN--VVVYIGDLMSRNTIREYEWIHSQTK 585
Query: 595 ----SVIITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSR 650
+ +ITTY I+ + + G N F + DE H ++N + K +I +S+
Sbjct: 586 RLKFNALITTYEILLKD---KTVLGSINWAFLGV--DEAHRLKNDDSLLYKTLIDFKSNH 640
Query: 651 KWILTGTPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQAFDVINAVLEP 710
+ ++TGTP+ N L +L+SL+ F+ E + +W+ + KG + ++ VLEP
Sbjct: 641 RLLITGTPLQNSLKELWSLLHFIMPEKF---EFWEDF-EEDHGKGR-ENGYQSLHKVLEP 695
Query: 711 VLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGLAKGDL 770
LLRR K KDV+ SLP K + ++++S+ +K+ Y+ +L ++ +G +G
Sbjct: 696 FLLRRVK--KDVE----KSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKG-TRGS- 747
Query: 771 LKNYTNILVHILRLRQVCCHLDLLK 795
+ NI ++ L++ C H L+K
Sbjct: 748 TSGFLNI---VMELKKCCNHCYLIK 769
Score = 67.4 bits (163), Expect = 1e-10
Identities = 51/182 (28%), Positives = 88/182 (48%), Gaps = 10/182 (5%)
Query: 914 VLKLKEPIDAERGYELISFHSHFQSTKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDIL 973
++K E + E G E++ S K+ L + L +++E G ++++FSQ LDIL
Sbjct: 767 LIKPPEENERENGQEILLSLIR-SSGKLILLDKLLTRLRER--GNRVLIFSQMVRMLDIL 823
Query: 974 EIELR-SHLPRDQVIIYKFDGRLDMKERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLT 1032
L H P + DG + + R + L+ F+ GG+G+NL
Sbjct: 824 AEYLTIKHYP-----FQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRA-GGLGINLA 877
Query: 1033 CASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGD 1092
A + D W+P + QA R HRIGQ++ V + R + +VEE+++ ++K +L
Sbjct: 878 SADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDH 937
Query: 1093 IV 1094
+V
Sbjct: 938 LV 939
>YIL126w [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2
and related ATPases (DNA/RNA helicase superfamily)
Length = 1359
Score = 92.8 bits (229), Expect = 3e-18
Identities = 96/327 (29%), Positives = 149/327 (45%), Gaps = 68/327 (20%)
Query: 480 GILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHD 539
GILADEMGLGKTI +++LI T Y+ KK D P
Sbjct: 491 GILADEMGLGKTIQSISLI-TYLYE---------VKK----------DIGPF-------- 522
Query: 540 TYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGN-NIKDLRAYVLGPNAPSVII 598
L++VP+S + W EFEK L IY G N + + + V++
Sbjct: 523 -------LVIVPLSTITNWTLEFEKWAPSLNTI--IYKGTPNQRHSLQHQIRVGNFDVLL 573
Query: 599 TTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIAL-RSSRKWILTGT 657
TTY EY S L + +I+DEGH ++N ++ S + R+ + ILTGT
Sbjct: 574 TTY-----EYIIKDKSLLSKHDWAHMIIDEGHRMKNAQSKLSFTISHYYRTRNRLILTGT 628
Query: 658 PIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQAFDV-----------INA 706
P+ N L +L++L+ F+ + ++ ++ + + PF + ++ ++
Sbjct: 629 PLQNNLPELWALLNFVLPKIFNSAKTFEDWFNTPFANTGTQEKLELTEEETLLIIRRLHK 688
Query: 707 VLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSV---KE 763
VL P LLRR K + D LP K V K +LS ++++YQ ML+ V E
Sbjct: 689 VLRPFLLRRLKKEVEKD------LPDKVEKVIKCKLSGLQQQLYQQMLKHNALFVGAGTE 742
Query: 764 GLAKGDLLKNYTNILVHILRLRQVCCH 790
G KG +K N I++LR++C H
Sbjct: 743 GATKGG-IKGLNN---KIMQLRKICNH 765
Score = 72.4 bits (176), Expect = 4e-12
Identities = 45/153 (29%), Positives = 77/153 (49%), Gaps = 6/153 (3%)
Query: 957 GEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDMKERTRILEQFHXXXXXXXX 1016
G ++++F Q + +DI+E LR + + DG +ERT +L F+
Sbjct: 807 GHRVLMFFQMTQVMDIMEDFLRMK----DLKYMRLDGSTKTEERTEMLNAFNAPDSDYFC 862
Query: 1017 XXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSV 1076
GG+GLNL A + D W+P + QA DR HRIGQ+ V+++R I +SV
Sbjct: 863 FLLSTRA-GGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITTDSV 921
Query: 1077 EEKML-RIQERKRMLGDIVEGDEAERRQKRIEE 1108
EE +L R ++ + G +++ + + + E+
Sbjct: 922 EEVILERAMQKLDIDGKVIQAGKFDNKSTAEEQ 954
>At3g19210 [L] KOG0390 DNA repair protein SNF2 family
Length = 688
Score = 92.4 bits (228), Expect = 3e-18
Identities = 80/335 (23%), Positives = 148/335 (43%), Gaps = 60/335 (17%)
Query: 477 INGGILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQH 536
ING ILAD+MGLGKT+ ++ L+ T + D +P+
Sbjct: 100 INGCILADDMGLGKTLQSITLLYTL--------------------LCQGFDGTPM----- 134
Query: 537 KHDTYAYRTTLIVVPMSLLNQWQSEFEKANKD---LKKRCEIYYGNNIKDLRAYVLGPNA 593
+ +IV P SL++ W++E +K D L CE + + + ++ +A
Sbjct: 135 ------VKKAIIVTPTSLVSNWEAEIKKWVGDRIQLIALCESTRDDVLSGIDSFTRPRSA 188
Query: 594 PSVIITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWI 653
V+I +Y + + S ++ +I DE H ++N T T++A+ +L R+ +
Sbjct: 189 LQVLIISYETFRMHSSKFCQSESCDL----LICDEAHRLKNDQTLTNRALASLTCKRRVL 244
Query: 654 LTGTPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPF-----------EKGNYAQAFD 702
L+GTP+ N L++ F++V F N +++ Y P EK A
Sbjct: 245 LSGTPMQNDLEEFFAMVNFTNPGSLGDAAHFRHYYEAPIICGREPTATEEEKNLAADRSA 304
Query: 703 VINAVLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVK 762
+++ + +LRRT + LPPK + V ++++ + +Y + + ++K
Sbjct: 305 ELSSKVNQFILRRTNALLS------NHLPPKIIEVVCCKMTTLQSTLYNHFI--SSKNLK 356
Query: 763 EGLAKGDLLKNYTNILVHILRLRQVCCHLDLLKKT 797
LA T +L +I L+++C H L+ T
Sbjct: 357 RALADN---AKQTKVLAYITALKKLCNHPKLIYDT 388
Score = 63.9 bits (154), Expect = 1e-09
Identities = 41/169 (24%), Positives = 82/169 (48%), Gaps = 6/169 (3%)
Query: 938 STKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDM 997
S K+ L R L ++ + ++I++ S ++ LD+ R + + DG +
Sbjct: 429 SGKMHVLSRLLANLRRKTD-DRIVLVSNYTQTLDLFAQLCRER----RYPFLRLDGSTTI 483
Query: 998 KERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIH 1057
+R +++ + + GG GLNL A+R + DP W+P + QA R+
Sbjct: 484 SKRQKLVNRLNDPTKDEFAFLLSSKA-GGCGLNLIGANRLVLFDPDWNPANDKQAAARVW 542
Query: 1058 RIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGDIVEGDEAERRQKRI 1106
R GQ++ V V RF+ ++EEK+ + Q K L +++ ++ + +++
Sbjct: 543 RDGQKKRVYVYRFLSTGTIEEKVYQRQMSKEGLQKVIQHEQTDNSTRQV 591
>At3g06010 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2
and related ATPases (DNA/RNA helicase superfamily)
Length = 1132
Score = 92.4 bits (228), Expect = 3e-18
Identities = 84/322 (26%), Positives = 147/322 (45%), Gaps = 65/322 (20%)
Query: 480 GILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHD 539
GILADEMGLGKTI ++LI +E+ P
Sbjct: 454 GILADEMGLGKTIQTISLIAYL---------LENKGVPG--------------------- 483
Query: 540 TYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGN--NIKDLRAYVLGPNAPSVI 597
LIV P ++L W +EF + +Y G K +R + G +V+
Sbjct: 484 -----PYLIVAPKAVLPNWVNEFATWVPSIA--AFLYDGRLEERKAIREKIAGEGKFNVL 536
Query: 598 ITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIA-LRSSRKWILTG 656
IT Y +I + + L + ++ +I+DEGH ++N + +K ++ R R+ +LTG
Sbjct: 537 ITHYDLIMRD-----KAFLKKIEWYYMIVDEGHRLKNHESALAKTLLTGYRIKRRLLLTG 591
Query: 657 TPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPF-EKGNYAQAFDV-------INAVL 708
TPI N L +L+SL+ FL ++ + ++ + + PF ++GN + + ++ V+
Sbjct: 592 TPIQNSLQELWSLLNFLLPHIFNSVQNFEEWFNAPFADRGNVSLTDEEELLIIHRLHHVI 651
Query: 709 EPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGLAKG 768
P +LRR K+ + LP K ++ K +S+ +K Y+ + + ++ G K
Sbjct: 652 RPFILRRKKDEVE------KFLPGKTQVILKCDMSAWQKVYYKQVTDMGRVGLQTGSGKS 705
Query: 769 DLLKNYTNILVHILRLRQVCCH 790
L+N T ++LR+ C H
Sbjct: 706 KSLQNLT------MQLRKCCNH 721
Score = 74.7 bits (182), Expect = 7e-13
Identities = 54/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 938 STKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDM 997
S K + L R L ++++ G +I++FSQ + +D+LEI +L + + DG
Sbjct: 742 SGKFELLDRLLPKLRKA--GHRILLFSQMTRLIDVLEI----YLTLNDYKYLRLDGTTKT 795
Query: 998 KERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIH 1057
+R +L+QF+ GG+GLNL A + D W+P M+ QA DR H
Sbjct: 796 DQRGLLLKQFNEPDSPYFMFLLSTRA-GGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAH 854
Query: 1058 RIGQQQTVKVVRFIIDNSVEEKML-RIQERKRMLGDIVEG------DEAERRQKRIEEI 1109
RIGQ++ V+V + SVEE +L R +++ + +++ A+ R++ +EEI
Sbjct: 855 RIGQKKEVRVFVLVSVGSVEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEI 913
>YPL082c [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 1867
Score = 91.7 bits (226), Expect = 6e-18
Identities = 82/322 (25%), Positives = 144/322 (44%), Gaps = 49/322 (15%)
Query: 480 GILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHD 539
GIL D+MGLGKT+ + +I + Y ++ E T+ + + S
Sbjct: 1293 GILCDDMGLGKTLQTICIIASDQY--LRKEDYEKTRSVESRALPS--------------- 1335
Query: 540 TYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKDLRAYVLGPNAPSVIIT 599
LI+ P SL W++EF++ LK +Y G L +A +I+T
Sbjct: 1336 -------LIICPPSLTGHWENEFDQYAPFLK--VVVYAGGPTVRLTLRPQLSDA-DIIVT 1385
Query: 600 TYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWILTGTPI 659
+Y + R + L + +LDEGH I+N ++ +KAV + ++ + ILTGTPI
Sbjct: 1386 SYDV-----ARNDLAVLNKTEYNYCVLDEGHIIKNSQSKLAKAVKEITANHRLILTGTPI 1440
Query: 660 INRLDDLFSLVQ-----FLNLEPWSHINYWKRYVSVPFEKGNYAQ------AFDVINAVL 708
N + +L+SL FL E + K + K + + A + ++ +
Sbjct: 1441 QNNVLELWSLFDFLMPGFLGTEKMFQERFAKPIAASRNSKTSSKEQEAGVLALEALHKQV 1500
Query: 709 EPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGLAKG 768
P +LRR K +DV L LPPK + +L +K++Y + +N V++ +
Sbjct: 1501 LPFMLRRLK--EDV----LSDLPPKIIQDYYCELGDLQKQLYMDFTKKQKNVVEKDIENS 1554
Query: 769 DLLKNYTNILVHILRLRQVCCH 790
++ +I + +R++C H
Sbjct: 1555 EIADGKQHIFQALQYMRKLCNH 1576
Score = 75.9 bits (185), Expect = 3e-13
Identities = 44/145 (30%), Positives = 77/145 (52%), Gaps = 5/145 (3%)
Query: 951 IQETSPGEQIIVFSQFSSFLDILEIEL-RSHLPRDQVIIYKFDGRLDMKERTRILEQFHX 1009
IQ + ++F Q LD++E +L + ++P V + DG +D ++R +++ +F+
Sbjct: 1640 IQNVISQHRALIFCQLKDMLDMVENDLFKKYMP--SVTYMRLDGSIDPRDRQKVVRKFNE 1697
Query: 1010 XXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVR 1069
GG+GLNLT A ++ W+P + QA+DR HRIGQ++ V V R
Sbjct: 1698 DPSIDCLLLTTK--VGGLGLNLTGADTVIFVEHDWNPMNDLQAMDRAHRIGQKKVVNVYR 1755
Query: 1070 FIIDNSVEEKMLRIQERKRMLGDIV 1094
I ++EEK++ +Q+ K + V
Sbjct: 1756 IITKGTLEEKIMGLQKFKMNIASTV 1780
>At3g12810 [R] KOG0391 SNF2 family DNA-dependent ATPase
Length = 1048
Score = 91.7 bits (226), Expect = 6e-18
Identities = 92/324 (28%), Positives = 145/324 (44%), Gaps = 62/324 (19%)
Query: 480 GILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHD 539
GILADEMGLGKTI +AL+ + D+
Sbjct: 142 GILADEMGLGKTIMTIALLAHLACDKG--------------------------------- 168
Query: 540 TYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKDLRAYVLGPNAPSVIIT 599
+ LIVVP S++ W++EF K K K R + N+ V IT
Sbjct: 169 --IWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWMKLNSFHVCIT 226
Query: 600 TYGIIQSEYGRTSTSGLFNVVFFR-IILDEGHTIRNRSTRTSKAVIALRSSRKWILTGTP 658
TY ++ + S +F ++ +ILDE H I+N ++ + ++ S R+ +LTGTP
Sbjct: 227 TYRLVIQD------SKMFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTP 280
Query: 659 IINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPF-------EKGNYAQAFDVINAVLEPV 711
+ N L +L+SL+ FL + +K + P EK N + D ++ VL P
Sbjct: 281 LQNDLMELWSLMHFLMPHVFQSHQEFKDWFCNPIAGMVEGQEKIN-KEVIDRLHNVLRPF 339
Query: 712 LLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGLAKGDLL 771
LLRR K +DV+ + LP K V +LS ++ +Y+ + E L G
Sbjct: 340 LLRRLK--RDVEKQ----LPSKHEHVIFCRLSKRQRNLYEDFIASTETQAT--LTSG--- 388
Query: 772 KNYTNILVHILRLRQVCCHLDLLK 795
++ ++ I++LR+VC H DL +
Sbjct: 389 -SFFGMISIIMQLRKVCNHPDLFE 411
Score = 78.2 bits (191), Expect = 7e-14
Identities = 47/155 (30%), Positives = 80/155 (51%), Gaps = 11/155 (7%)
Query: 940 KIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDMKE 999
++ LLR LK G + ++F+Q + LD+LE + + + DG +E
Sbjct: 664 ELAMLLRKLK-----FGGHRALIFTQMTKMLDVLEAFINLY----GYTYMRLDGSTPPEE 714
Query: 1000 RTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRI 1059
R ++++F+ +GGVG+NL A D W+P M+ QA DR HRI
Sbjct: 715 RQTLMQRFNTNPKIFLFILSTR--SGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRI 772
Query: 1060 GQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGDIV 1094
GQ + V + R I ++++EE +L+ +KR+L ++V
Sbjct: 773 GQTREVHIYRLISESTIEENILKKANQKRVLDNLV 807
>Hs22047966 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1953
Score = 90.9 bits (224), Expect = 1e-17
Identities = 82/325 (25%), Positives = 153/325 (46%), Gaps = 75/325 (23%)
Query: 481 ILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHDT 540
ILADEMGLGKTI ++A + Q ++
Sbjct: 205 ILADEMGLGKTIQSIAFL------------------------------------QEVYNV 228
Query: 541 YAYRTTLIVVPMSLLNQWQSEFEK-------------ANKDLKKRCEIYYGNNIKDLRAY 587
+ L++ P+S + W+ EF A++ + ++ E+Y KD R
Sbjct: 229 GIHGPFLVIAPLSTITNWEREFNTWTEMNTIVYHGSLASRQMIQQYEMY----CKDSRGR 284
Query: 588 VL-GPNAPSVIITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIAL 646
++ G +ITT+ +I S+ L + + +I+DE H ++NR+ + ++ +
Sbjct: 285 LIPGAYKFDALITTFEMILSDCPE-----LREIEWRCVIIDEAHRLKNRNCKLLDSLKHM 339
Query: 647 RSSRKWILTGTPIINRLDDLFSLVQFLNLEPW-SHINYWKRYVSVPFEKGNYAQAFDVIN 705
K +LTGTP+ N +++LFSL+ FL + S + K + + E + +
Sbjct: 340 DLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGDLKTE-----EQVQKLQ 394
Query: 706 AVLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGL 765
A+L+P++LRR K +DV+ +L PK+ + +++L++ +K+ Y+++LE + L
Sbjct: 395 AILKPMMLRRLK--EDVE----KNLAPKQETIIEVELTNIQKKYYRAILEKNFSF----L 444
Query: 766 AKGDLLKNYTNILVHILRLRQVCCH 790
+KG N N+L ++ LR+ C H
Sbjct: 445 SKGAGHTNMPNLLNTMMELRKCCNH 469
Score = 67.0 bits (162), Expect = 2e-10
Identities = 42/124 (33%), Positives = 62/124 (49%), Gaps = 5/124 (4%)
Query: 957 GEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDMKERTRILEQFHXXXXXXXX 1016
G ++++FSQ LDILE +L + + + + DGR+ R +++F
Sbjct: 521 GHKVLIFSQMVRCLDILE----DYLIQRRYLYERIDGRVRGNLRQAAIDRF-SKPDSDRF 575
Query: 1017 XXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSV 1076
GG+G+NLT A + D W+P + QA R HRIGQ + VKV R I NS
Sbjct: 576 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSY 635
Query: 1077 EEKM 1080
E +M
Sbjct: 636 EREM 639
>Hs5730067 [R] KOG0391 SNF2 family DNA-dependent ATPase
Length = 2971
Score = 90.1 bits (222), Expect = 2e-17
Identities = 58/174 (33%), Positives = 92/174 (52%), Gaps = 12/174 (6%)
Query: 941 IKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDMKER 1000
+ LLR LK + G ++++F+Q + LD+LE L H + + DG +++R
Sbjct: 1789 LAVLLRQLK-----AEGHRVLIFTQMTRMLDVLEQFLTYH----GHLYLRLDGSTRVEQR 1839
Query: 1001 TRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIG 1060
++E+F+ +GGVG+NLT A D W+P M+ QA DR HRIG
Sbjct: 1840 QALMERFNADKRIFCFILSTR--SGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIG 1897
Query: 1061 QQQTVKVVRFIIDNSVEEKMLRIQERKRMLGDI-VEGDEAERRQKRIEEIQMLF 1113
Q + V + R I + +VEE +L+ +KRMLGD+ +EG + + I+ LF
Sbjct: 1898 QTRDVHIYRLISERTVEENILKKANQKRMLGDMAIEGGNFTTAYFKQQTIRELF 1951
Score = 88.2 bits (217), Expect = 7e-17
Identities = 86/322 (26%), Positives = 147/322 (44%), Gaps = 62/322 (19%)
Query: 480 GILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHD 539
GILADEMGLGKTI ++L+ + ++ +
Sbjct: 442 GILADEMGLGKTIQTISLLAHLACEKGN-------------------------------- 469
Query: 540 TYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYG--NNIKDLRAYVLGPNAPSVI 597
+ LI+VP S++ W+ E ++ K YYG K R PNA V
Sbjct: 470 ---WGPHLIIVPTSVMLNWEMELKRWCPSFK--ILTYYGAQKERKLKRQGWTKPNAFHVC 524
Query: 598 ITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWILTGT 657
IT+Y ++ ++ + +ILDE I+N ++ ++++ S R+ +LTGT
Sbjct: 525 ITSYKLVLQDHQAFRRKN-----WRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGT 579
Query: 658 PIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFE-----KGNYAQAF-DVINAVLEPV 711
P+ N L +L+SL+ FL + +K + S P Y + ++ VL P
Sbjct: 580 PLQNSLMELWSLMHFLMPHVFQSHREFKEWFSNPLTGMIEGSQEYNEGLVKRLHKVLRPF 639
Query: 712 LLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGLAKGDLL 771
LLRR K DV+ + +P K V + +LS ++ +Y + A+ + KE LA G
Sbjct: 640 LLRRVK--VDVEKQ----MPKKYEHVIRCRLSKRQRCLYDDFM--AQTTTKETLATG--- 688
Query: 772 KNYTNILVHILRLRQVCCHLDL 793
++ +++ +++LR+VC H +L
Sbjct: 689 -HFMSVINILMQLRKVCNHPNL 709
>Hs22054523 [L] KOG0298 DEAD box-containing helicase-like transcription
factor/DNA repair protein
Length = 1669
Score = 90.1 bits (222), Expect = 2e-17
Identities = 78/279 (27%), Positives = 120/279 (42%), Gaps = 43/279 (15%)
Query: 544 RTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKD--LRAYVLGPNAPSVIITTY 601
R TLI+ P S+ +QW E + + R +Y G KD L+ + L ++I TY
Sbjct: 753 RATLIISPSSICHQWVDEINRHVRSSSLRVLVYQGVK-KDGFLQPHFLAEQ--DIVIITY 809
Query: 602 GIIQSEYGRTST---------------------SGLFNVVFFRIILDEGHTIRNRSTRTS 640
+++SE S L V ++RI LDE + + + +
Sbjct: 810 DVLRSELNYVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAA 869
Query: 641 KAVIALRSSRKWILTGTPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQA 700
+ L +W ++GTP+ L+DLF LV FL +EP+ ++W R + P+ K N
Sbjct: 870 EMAQRLSGINRWCISGTPVQRGLEDLFGLVVFLGIEPYCVKHWWVRLLYRPYCKKNPQHL 929
Query: 701 FDVINAVLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENS 760
+ I +L R K KDV + + +PP+ + L S E+ Y E
Sbjct: 930 YSFI----AKILWRSAK--KDVIDQ--IQIPPQTEEIHWLHFSPVERHFYHRQHEVCCQD 981
Query: 761 VKEGLAK-GDLL--------KNYTNILVHILRLRQVCCH 790
V L K D + T+IL +LRLRQ CCH
Sbjct: 982 VVVKLRKISDWALKLSSLDRRTVTSILYPLLRLRQACCH 1020
Score = 62.0 bits (149), Expect = 5e-09
Identities = 49/161 (30%), Positives = 78/161 (48%), Gaps = 21/161 (13%)
Query: 340 NEMIPNYQENTVSSSQFQDEALNINQLKSFYRITQSAASLQNLPETTPDESLFKLQLRRY 399
N +IP+ E + + E +I++L F + T + Q++ +L + LR Y
Sbjct: 287 NSIIPDVLEEDEDDPESEPEGQDIDELYHFVKQTHQQET-QSIQVDVQHPALIPV-LRPY 344
Query: 400 QKQSLSWMLKREYEYSHLSEKAAEVSIDGNSMNPLWKKFRWPSNSKQGTPNHEDDCFFYA 459
Q+++++WML++E S + ++A ++ LW++ K Y
Sbjct: 345 QREAVNWMLQQECFRSSPATESA--------LHFLWREIVTSEGLK-----------LYY 385
Query: 460 NLYTGEFSIEKPVIKTIINGGILADEMGLGKTISALALICT 500
N YTG E P + GGILADEMGLGKT+ LALI T
Sbjct: 386 NPYTGCIIREYPNSGPQLLGGILADEMGLGKTVEVLALILT 426
>SPAC1250.01 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2
and related ATPases (DNA/RNA helicase superfamily)
Length = 1199
Score = 89.7 bits (221), Expect = 2e-17
Identities = 90/325 (27%), Positives = 146/325 (44%), Gaps = 66/325 (20%)
Query: 480 GILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHD 539
GILADEMGLGKTI ++LI EKK ++ P
Sbjct: 438 GILADEMGLGKTIQTISLIT-----HLIEKKRQN---------------GPF-------- 469
Query: 540 TYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYG--NNIKDLRAYVLGPNAPSVI 597
L++VP+S L W EFE+ + K +Y G K L V N V+
Sbjct: 470 -------LVIVPLSTLTNWTMEFERWAPSIVKI--VYKGPPQVRKALHPQVRHSNF-QVL 519
Query: 598 ITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSR-KWILTG 656
+TTY EY L + + +I+DEGH ++N ++ + + SSR + ILTG
Sbjct: 520 LTTY-----EYIIKDRPLLSRIKWIYMIIDEGHRMKNTQSKLTNTLTTYYSSRYRLILTG 574
Query: 657 TPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQAFDV-----------IN 705
TP+ N L +L++L+ F+ ++ I + + + PF ++ ++
Sbjct: 575 TPLQNNLPELWALLNFVLPRIFNSIKSFDEWFNTPFANTGGQDKMELTEEESLLVIRRLH 634
Query: 706 AVLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGL 765
VL P LLRR K KDV+ + LP K V + Q+S ++++Y M + V++
Sbjct: 635 KVLRPFLLRRLK--KDVEAE----LPDKVEKVIRCQMSGLQQKLYYQMKKHGMLYVEDAK 688
Query: 766 AKGDLLKNYTNILVHILRLRQVCCH 790
+K N +++L+++C H
Sbjct: 689 RGKTGIKGLQNT---VMQLKKICNH 710
Score = 68.6 bits (166), Expect = 5e-11
Identities = 52/185 (28%), Positives = 89/185 (48%), Gaps = 11/185 (5%)
Query: 922 DAERGYELISFHSHFQ---STKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELR 978
D ER + F+ S K + L R L ++ + G +I++F Q + ++I+E
Sbjct: 716 DVERSIDPTGFNYDMLWRVSGKFELLDRILPKLFRS--GHRILMFFQMTQIMNIME---- 769
Query: 979 SHLPRDQVIIYKFDGRLDMKERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAF 1038
+L Q + DG +R+++L F+ GG+GLNL A
Sbjct: 770 DYLHYRQWRYLRLDGSTKADDRSKLLGVFNDPTAEVNLFLLSTRA-GGLGLNLQTADTVI 828
Query: 1039 MMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSVEEKML-RIQERKRMLGDIVEGD 1097
+ D W+P + QA DR HRIGQ + V++ R I + SVEE +L R Q + + G +++
Sbjct: 829 IFDSDWNPHQDLQAQDRAHRIGQTKEVRIYRLITEKSVEENILARAQYKLDIDGKVIQAG 888
Query: 1098 EAERR 1102
+ + +
Sbjct: 889 KFDNK 893
>Hs4557447 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1709
Score = 89.7 bits (221), Expect = 2e-17
Identities = 88/325 (27%), Positives = 150/325 (46%), Gaps = 65/325 (20%)
Query: 478 NGGILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHK 537
N ILADEMGLGKTI ++ L + H+
Sbjct: 500 NSCILADEMGLGKTIQTISF---------------------------------LNYLFHE 526
Query: 538 HDTYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYG--NNIKDLRAYVLGPNAP- 594
H Y L+VVP+S L WQ E + + +Y G N+ +R + +
Sbjct: 527 HQLYG--PFLLVVPLSTLTSWQREIQTWASQMN--AVVYLGDINSRNMIRTHEWTHHQTK 582
Query: 595 ----SVIITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSR 650
++++TTY I+ + + G N F + DE H ++N + K +I +S+
Sbjct: 583 RLKFNILLTTYEILLKD---KAFLGGLNWAFIGV--DEAHRLKNDDSLLYKTLIDFKSNH 637
Query: 651 KWILTGTPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQAFDVINAVLEP 710
+ ++TGTP+ N L +L+SL+ F+ E +S W+ + + Y A ++ LEP
Sbjct: 638 RLLITGTPLQNSLKELWSLLHFIMPEKFSS---WEDFEEEHGKGREYGYA--SLHKELEP 692
Query: 711 VLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGLAKGDL 770
LLRR K KDV+ SLP K + ++++S+ +K+ Y+ +L ++ +G +KG
Sbjct: 693 FLLRRVK--KDVE----KSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKG-SKGS- 744
Query: 771 LKNYTNILVHILRLRQVCCHLDLLK 795
+ NI+ + L++ C H L+K
Sbjct: 745 TSGFLNIM---MELKKCCNHCYLIK 766
Score = 69.3 bits (168), Expect = 3e-11
Identities = 50/178 (28%), Positives = 79/178 (44%), Gaps = 5/178 (2%)
Query: 917 LKEPIDAERGYELISFHSHFQSTKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIE 976
L +P D Y H + K +L I+ G ++++FSQ LDIL
Sbjct: 764 LIKPPDNNEFYNKQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILA-- 821
Query: 977 LRSHLPRDQVIIYKFDGRLDMKERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASR 1036
+L Q + DG + + R + L+ F+ GG+G+NL A
Sbjct: 822 --EYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRA-GGLGINLASADT 878
Query: 1037 AFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGDIV 1094
+ D W+P + QA R HRIGQ++ V + R + SVEE +L ++K +L +V
Sbjct: 879 VVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLV 936
>Hs22047300 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1970
Score = 89.4 bits (220), Expect = 3e-17
Identities = 84/321 (26%), Positives = 148/321 (45%), Gaps = 67/321 (20%)
Query: 481 ILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHDT 540
ILADEMGLGKTI ++ + E + K I H
Sbjct: 421 ILADEMGLGKTIQSITFLY-----EIYLKGI--------------------------HGP 449
Query: 541 YAYRTTLIVVPMSLLNQWQSEFEKANK---------DLKKRCEIYYGNNIKDLRAYVL-G 590
+ L++ P+S + W+ EF + +R Y KD + V+ G
Sbjct: 450 F-----LVIAPLSTIPNWEREFRTWTELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKG 504
Query: 591 PNAPSVIITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSR 650
IITT+ +I T L N+ + +++DE H ++NR+ + + + +
Sbjct: 505 SYKFHAIITTFEMIL-----TDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEH 559
Query: 651 KWILTGTPIINRLDDLFSLVQFLNLEPW-SHINYWKRYVSVPFEKGNYAQAFDVINAVLE 709
K +LTGTP+ N +++LFSL+ FL + S + + + + E + + A+L+
Sbjct: 560 KVLLTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEFGDLKTE-----EQVQKLQAILK 614
Query: 710 PVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGLAKGD 769
P++LRR K +DV+ +L PKE + +++L++ +K+ Y+++LE L+KG
Sbjct: 615 PMMLRRLK--EDVE----KNLAPKEETIIEVELTNIQKKYYRAILEKNFTF----LSKGG 664
Query: 770 LLKNYTNILVHILRLRQVCCH 790
N N+L ++ LR+ C H
Sbjct: 665 GQANVPNLLNTMMELRKCCNH 685
Score = 65.1 bits (157), Expect = 6e-10
Identities = 41/124 (33%), Positives = 62/124 (49%), Gaps = 5/124 (4%)
Query: 957 GEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDMKERTRILEQFHXXXXXXXX 1016
G ++++FSQ LDILE +L + + + DGR+ R +++F
Sbjct: 737 GHRVLIFSQMVRCLDILE----DYLIQRRYPYERIDGRVRGNLRQAAIDRF-SKPDSDRF 791
Query: 1017 XXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSV 1076
GG+G+NLT A + D W+P + QA R HRIGQ ++VK+ R I NS
Sbjct: 792 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSY 851
Query: 1077 EEKM 1080
E +M
Sbjct: 852 EREM 855
>At3g57300 [L] KOG0388 SNF2 family DNA-dependent ATPase
Length = 1496
Score = 89.4 bits (220), Expect = 3e-17
Identities = 116/503 (23%), Positives = 203/503 (40%), Gaps = 88/503 (17%)
Query: 339 KNEMIPNYQENTVSSSQFQDEALNINQLKSFYRITQSAASLQNLPETTPDESLFKLQLRR 398
+ E+ ++ +N S+ EAL I + ++ + P+E+ K ++ R
Sbjct: 461 QTELYSHFMQNKTDSNP--SEALPIGDENPIDEVLPETSAAEPSEVEDPEEAELKEKVLR 518
Query: 399 YQKQSLSWMLKR----EYEYSHLSEKAA------EVSIDGNSMNPLWKKFRWPSNSKQGT 448
+ ++S + + EY L + + ++S+ G+S L P S T
Sbjct: 519 AAQDAVSKQKQITDAFDTEYMKLRQTSEMEGPLNDISVSGSSNIDLHNPSTMPVTSTVQT 578
Query: 449 PNHEDDCFFYANLYTGEFSIEKPVIKTIING--GILADEMGLGKTISALALICTASYDEA 506
P F L + + ++ G GILADEMGLGKTI A+A + A
Sbjct: 579 PE-----LFKGTLKEYQMKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHL----A 629
Query: 507 HEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHDTYAYRTTLIVVPMSLLNQWQSEFEKAN 566
EK I + L+V P S+LN W E +
Sbjct: 630 EEKNI-------------------------------WGPFLVVAPASVLNNWADEISRFC 658
Query: 567 KDLKKRCEIYYGN---------NIKDLRAYVLGPNAPSVIITTYGIIQSEYGRTSTSGLF 617
DLK Y+G NI R Y ++IT+Y ++ T
Sbjct: 659 PDLKTLP--YWGGLQERTILRKNINPKRMYRRDAGF-HILITSYQLLV-----TDEKYFR 710
Query: 618 NVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWILTGTPIINRLDDLFSLVQFLNLEP 677
V + ++LDE I++ S+ K +++ + +LTGTPI N + +L++L+ F+
Sbjct: 711 RVKWQYMVLDEAQAIKSSSSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPML 770
Query: 678 WSHINYWKRYVSVPFEKGNYAQAFDVIN--------AVLEPVLLRRTKNMKDVDGKPLVS 729
+ + + + + S E N+A+ +N A+L+P +LRR K KDV +
Sbjct: 771 FDNHDQFNEWFSKGIE--NHAEHGGTLNEHQLNRLHAILKPFMLRRVK--KDV----VSE 822
Query: 730 LPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGLAKGDLL-KNYTNILVHILRLRQVC 788
L K + +LSS ++ YQ++ + +G K N++ +++LR+VC
Sbjct: 823 LTTKTEVTVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQFTDKKVLNLMNIVIQLRKVC 882
Query: 789 CHLDLLKKTXXXXXXXXXXXXNS 811
H +L ++ NS
Sbjct: 883 NHPELFERNEGSSYLYFGVTSNS 905
Score = 57.8 bits (138), Expect = 9e-08
Identities = 44/167 (26%), Positives = 79/167 (46%), Gaps = 23/167 (13%)
Query: 938 STKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDM 997
S K++ L LK+++ + ++++F+Q + L+ILE ++ + + DG +
Sbjct: 1205 SGKLQTLDILLKRLR--AGNHRVLLFAQMTKMLNILE----DYMNYRKYKYLRLDGSSTI 1258
Query: 998 KERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIH 1057
+R ++ F GG+G+NLT A + W+P ++ QA+DR H
Sbjct: 1259 MDRRDMVRDFQHRSDIFVFLLSTRA--GGLGINLTAADTVIFYESDWNPTLDLQAMDRAH 1316
Query: 1058 RIGQQQTVKVVRFIIDNSVEEKMLRIQERKR------MLGDIVEGDE 1098
R+GQ + D +VEEK+L +K M G V+GD+
Sbjct: 1317 RLGQTK---------DETVEEKILHRASQKNTVQQLVMTGGHVQGDD 1354
>CE05553 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2
and related ATPases (DNA/RNA helicase superfamily)
Length = 1474
Score = 88.6 bits (218), Expect = 5e-17
Identities = 92/324 (28%), Positives = 149/324 (45%), Gaps = 70/324 (21%)
Query: 480 GILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHD 539
GILADEMGLGKTI ++L+ + +++ P
Sbjct: 554 GILADEMGLGKTIQTISLV-------TYLMEVKQNNGP---------------------- 584
Query: 540 TYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKDLRAYVLG---PNAPSV 596
L++VP+S L+ WQ+EF K + IY G KD R V G A +V
Sbjct: 585 ------YLVIVPLSTLSNWQNEFAKWAPSV--TTIIYKGT--KDARRRVEGQIRKGAFNV 634
Query: 597 IITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIA-LRSSRKWILT 655
++TTY EY + L + + +I+DEGH ++N + + + + + + +LT
Sbjct: 635 LMTTY-----EYVIKEKALLGKIRWKYMIIDEGHRLKNHNCKLTLMLNGFFHAQHRLLLT 689
Query: 656 GTPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPF----EKGNYAQAFDV-----INA 706
GTP+ N+L +L++L+ FL +S ++++ + PF EK Q + ++
Sbjct: 690 GTPLQNKLPELWALLNFLLPSIFSSCGTFEQWFNAPFATTGEKVELNQEETMLIIRRLHK 749
Query: 707 VLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGLA 766
VL P LLRR K K+V+ + LP K V K S+ +K +Y+ M + K
Sbjct: 750 VLRPFLLRRLK--KEVESQ----LPDKTEYVIKCDQSALQKVIYRHMQKGLLLDAKMSSG 803
Query: 767 KGDLLKNYTNILVHILRLRQVCCH 790
L+ N +VH LR++C H
Sbjct: 804 ARSLM----NTVVH---LRKLCNH 820
Score = 79.7 bits (195), Expect = 2e-14
Identities = 57/176 (32%), Positives = 89/176 (50%), Gaps = 8/176 (4%)
Query: 940 KIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDMKE 999
K++ L R L +++ T G +I++F Q +S ++I E L + + DG E
Sbjct: 851 KLELLDRILPKLKAT--GHRILMFFQMTSMMNIFEDFLNFR----RYTYLRLDGSTKPDE 904
Query: 1000 RTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRI 1059
R +L QF+ GG+GLNL A + D W+P + QA DR HRI
Sbjct: 905 RGDLLTQFNAPNSDLFLFMLSTRA-GGLGLNLQTADTVIIFDSDWNPHQDMQAQDRAHRI 963
Query: 1060 GQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGD-IVEGDEAERRQKRIEEIQMLFQ 1114
GQ++ V+V+R I NSVEEK+L K + + +++ + ++R E QML Q
Sbjct: 964 GQKKEVRVLRLITANSVEEKILAAARYKLNVDEKVIQAGKFDQRSTGAERKQMLEQ 1019
>At5g66750 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 764
Score = 88.6 bits (218), Expect = 5e-17
Identities = 85/333 (25%), Positives = 146/333 (43%), Gaps = 68/333 (20%)
Query: 480 GILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHD 539
GILAD+MGLGKTI + + H
Sbjct: 223 GILADQMGLGKTIQTIGFL------------------------------------SHLKG 246
Query: 540 TYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYG--NNIKDLRAY----VLGPNA 593
L++ P+S L+ W +E + + IY+G N +LR +GP
Sbjct: 247 NGLDGPYLVIAPLSTLSNWFNEIARFTPSIN--AIIYHGDKNQRDELRRKHMPKTVGPKF 304
Query: 594 PSVIITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWI 653
P ++IT+Y + ++ R L + + +++DEGH ++N + + + L+ K +
Sbjct: 305 P-IVITSYEVAMNDAKRI----LRHYPWKYVVIDEGHRLKNHKCKLLRELKHLKMDNKLL 359
Query: 654 LTGTPIINRLDDLFSLVQFL---------NLEPWSHINYW-KRYVSVPFEKGNYAQAFDV 703
LTGTP+ N L +L+SL+ F+ E W + K + E+ AQ
Sbjct: 360 LTGTPLQNNLSELWSLLNFILPDIFTSHDEFESWFDFSEKNKNEATKEEEEKRRAQVVSK 419
Query: 704 INAVLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDA-ENSVK 762
++ +L P +LRR K DV+ +SLP K+ I+ ++ +K+ + ++ + E +
Sbjct: 420 LHGILRPFILRRMK--CDVE----LSLPRKKEIIMYATMTDHQKKFQEHLVNNTLEAHLG 473
Query: 763 EGLAKGDLLKNYTNILVHILRLRQVCCHLDLLK 795
E +G K N LV ++LR+ C H DLL+
Sbjct: 474 ENAIRGQGWKGKLNNLV--IQLRKNCNHPDLLQ 504
Score = 72.0 bits (175), Expect = 5e-12
Identities = 42/138 (30%), Positives = 69/138 (49%), Gaps = 5/138 (3%)
Query: 959 QIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDMKERTRILEQFHXXXXXXXXXX 1018
++++FSQ++ LDI++ + + + DG + + ER R ++ F
Sbjct: 542 KVLIFSQWTKLLDIMDY----YFSEKGFEVCRIDGSVKLDERRRQIKDF-SDEKSSCSIF 596
Query: 1019 XXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSVEE 1078
GG+G+NLT A + D W+P M+ QA+DR HRIGQ + V V R S+E
Sbjct: 597 LLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLSTAQSIET 656
Query: 1079 KMLRIQERKRMLGDIVEG 1096
++L+ K L +V G
Sbjct: 657 RVLKRAYSKLKLEHVVIG 674
>Hs21071056 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1647
Score = 88.2 bits (217), Expect = 7e-17
Identities = 92/329 (27%), Positives = 151/329 (44%), Gaps = 73/329 (22%)
Query: 480 GILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHD 539
GILADEMGLGKTI +ALI +HK
Sbjct: 775 GILADEMGLGKTIQTIALITYLM--------------------------------EHKRI 802
Query: 540 TYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKDLRAYV--LGPNAPSVI 597
+ LI+VP+S L+ W EF+K + K + Y + RA+V L +V+
Sbjct: 803 NGPF---LIIVPLSTLSNWAYEFDKWAPSVVK---VSYKGSPAARRAFVPQLRSGKFNVL 856
Query: 598 ITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIA-LRSSRKWILTG 656
+TTY EY L + + +I+DEGH ++N + ++ + + R+ +LTG
Sbjct: 857 LTTY-----EYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTG 911
Query: 657 TPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPF----EKGNYAQAFDV-----INAV 707
TP+ N+L +L++L+ FL + + ++++ + PF EK + + + ++ V
Sbjct: 912 TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKV 971
Query: 708 LEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSM------LEDAENSV 761
L P LLRR K K+V+ + LP K V K +S+ ++ +Y+ M L D
Sbjct: 972 LRPFLLRRLK--KEVEAQ----LPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKD 1025
Query: 762 KEGLAKGDLLKNYTNILVHILRLRQVCCH 790
K+G L N I++LR++C H
Sbjct: 1026 KKGKGGTKTLMN------TIMQLRKICNH 1048
Score = 68.2 bits (165), Expect = 7e-11
Identities = 47/150 (31%), Positives = 74/150 (49%), Gaps = 7/150 (4%)
Query: 938 STKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDM 997
S K + L R L +++ T+ ++++F Q +S + I+E + + DG
Sbjct: 1079 SGKFELLDRILPKLRATN--HKVLLFCQMTSLMTIME----DYFAYRGFKYLRLDGTTKA 1132
Query: 998 KERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIH 1057
++R +L+ F+ GG+GLNL A + D W+P + QA DR H
Sbjct: 1133 EDRGMLLKTFNEPGSEYFIFLLSTRA-GGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAH 1191
Query: 1058 RIGQQQTVKVVRFIIDNSVEEKMLRIQERK 1087
RIGQQ V+V+R NSVEEK+L + K
Sbjct: 1192 RIGQQNEVRVLRLCTVNSVEEKILAAAKYK 1221
>SPAC1783.05 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1373
Score = 87.8 bits (216), Expect = 9e-17
Identities = 85/288 (29%), Positives = 131/288 (44%), Gaps = 70/288 (24%)
Query: 480 GILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHD 539
GILADEMGLGKT+ +C SY L HS +H
Sbjct: 411 GILADEMGLGKTVQT---VCFLSY---------------------------LVHSLKQHG 440
Query: 540 TYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGN-----NIKDLRAYVLGPNAP 594
+ LIVVP+S + WQ DL C Y GN NI++ Y L N+
Sbjct: 441 PF-----LIVVPLSTVPAWQETLANWTPDLNSIC--YTGNTESRANIREYEFY-LSTNSR 492
Query: 595 ----SVIITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSR 650
++++TTY EY L N+ + + +DE H ++N + + + R++
Sbjct: 493 KLKFNILLTTY-----EYILKDKQELNNIRWQYLAIDEAHRLKNSESSLYETLSQFRTAN 547
Query: 651 KWILTGTPIINRLDDLFSLVQFLNLEPWSHINYWKRYV--SVPFEKGNYAQAFDV--INA 706
+ ++TGTP+ N L +L SLV FL K Y+ + F++ N Q D+ +
Sbjct: 548 RLLITGTPLQNNLKELASLVNFL--------MPGKFYIRDELNFDQPNAEQERDIRDLQE 599
Query: 707 VLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSML 754
L+P +LRR K KDV+ SLP K + +++LS + Y+++L
Sbjct: 600 RLQPFILRRLK--KDVE----KSLPSKSERILRVELSDMQTEWYKNIL 641
Score = 61.6 bits (148), Expect = 7e-09
Identities = 45/149 (30%), Positives = 71/149 (47%), Gaps = 14/149 (9%)
Query: 944 LLRHLKQIQETSPGEQIIVFSQFSSFLDILE--IELRSHLPRDQVIIYKFDGRLDMKERT 1001
LL+ LK G ++++FSQ L+IL + LR + + + DG + R
Sbjct: 712 LLQRLKH-----DGHRVLIFSQMVRMLNILGEYMSLRGYNYQ------RLDGTIPASVRR 760
Query: 1002 RILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQ 1061
++ F+ GG+G+NL A + D W+P + QA+ R HRIGQ
Sbjct: 761 VSIDHFNAPDSPDFVFLLSTRA-GGLGINLNTADTVIIFDSDWNPQADLQAMARAHRIGQ 819
Query: 1062 QQTVKVVRFIIDNSVEEKMLRIQERKRML 1090
+ V V RF+ ++VEE +L RK +L
Sbjct: 820 KNHVNVYRFLSKDTVEEDILERARRKMIL 848
>At2g40770 [L] KOG0298 DEAD box-containing helicase-like transcription
factor/DNA repair protein
Length = 1648
Score = 87.8 bits (216), Expect = 9e-17
Identities = 71/285 (24%), Positives = 123/285 (42%), Gaps = 46/285 (16%)
Query: 546 TLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKDLRAYVLGP-----NAPSVIITT 600
TLIV P +L QW SE + + IY G L + NA +++TT
Sbjct: 486 TLIVCPAPILPQWHSEITRHTRLGSLITCIYEGVRNASLSEEPMIDITELLNA-DIVLTT 544
Query: 601 YGIIQSEYGR-------------------TSTSGLFNVVFFRIILDEGHTIRNRSTRTSK 641
Y +++ + + L + ++RI LDE + + + ++
Sbjct: 545 YDVLKEDLTHDFDRHDGDRHCLRFQKRYPVIPTPLTRIFWWRICLDEAQMVESNAAAATE 604
Query: 642 AVIALRSSRKWILTGTPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQAF 701
+ L + +W +TGTPI +LDDLF L++FL P+ +W + P+E+ + +A
Sbjct: 605 MALRLYTKHRWCITGTPIQRKLDDLFGLLKFLKANPFDVSRWWIEVIRDPYERRD-TKAM 663
Query: 702 DVINAVLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSV 761
+ + + V+ R +K V + LPP+E V L+ S+ E+ Y + +
Sbjct: 664 EFTHKFFKQVMWRSSK----VHVADELQLPPQEECVSWLKFSAIEEHFYSRQHDTCVSYA 719
Query: 762 KEGL--AKGDLLK--------------NYTNILVHILRLRQVCCH 790
+E + K D+LK +L +L+LRQ CCH
Sbjct: 720 REVIETLKRDILKRGHTSSDNPLVTHAEAAKLLNSLLKLRQACCH 764
Score = 78.2 bits (191), Expect = 7e-14
Identities = 57/232 (24%), Positives = 99/232 (42%), Gaps = 22/232 (9%)
Query: 874 ITECLHTFCEPC---LAEYIEFQQNKKLSINCPYCRMPISEANVLKLKEPIDAE------ 924
+ +C H+ C C + E Q+ + + CP CR N+ + ++
Sbjct: 1341 VFQCGHSTCCNCFFAMTERKSVQETLQKWVMCPICRQHTDVRNIAYADDRRNSSSSDQDH 1400
Query: 925 RGYELISFHSHFQSTKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHL--- 981
+ E TKI+A+ R + I+ + P +++VFS ++ LD+LE ++
Sbjct: 1401 KDSEASLVVQGSYGTKIEAVTRRILWIKSSDPQTKVLVFSSWNDVLDVLEHAFAANSITC 1460
Query: 982 ------PRDQVIIYKFDGRLDMKERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCAS 1035
+ Q I KF G ++T H G GLNL A
Sbjct: 1461 IRMKGGRKSQTAISKFKGSEKETQKTNS----HQKEEKSIQVLLLLVQHGANGLNLLEAQ 1516
Query: 1036 RAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSVEEKMLRIQERK 1087
+++P +P E QA+ R+HRIGQ++ V RF++ +VEE + ++ K
Sbjct: 1517 HVILVEPLLNPAAEAQAVGRVHRIGQEKPTLVHRFLVSGTVEESIYKLNRNK 1568
>YFR038w [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 778
Score = 87.4 bits (215), Expect = 1e-16
Identities = 82/316 (25%), Positives = 146/316 (45%), Gaps = 73/316 (23%)
Query: 480 GILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHD 539
GILADEMGLGKT+ ++AL+ Y+ TK P
Sbjct: 243 GILADEMGLGKTVQSIALLAFI-YEM-------DTKGPF--------------------- 273
Query: 540 TYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNN-----IKDLRAYVLGPNAP 594
L+ P+S L+ W +EF K DL YYG N L+ +
Sbjct: 274 -------LVTAPLSTLDNWMNEFAKFAPDLPVLK--YYGTNGYKERSAKLKNFFKQHGGT 324
Query: 595 SVIITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWIL 654
++IT+Y II + T + + + +I+DEGH ++N + R K + + +S + +L
Sbjct: 325 GIVITSYEIILRD-----TDLIMSQNWKFLIVDEGHRLKNINCRLIKELKKINTSNRLLL 379
Query: 655 TGTPIINRLDDLFSLVQFLNLEPWSH---INYWKRYVSVPFEKGNYAQAFDV-------- 703
TGTP+ N L +L+SL+ F+ + ++ N W + S+ G+ ++A +
Sbjct: 380 TGTPLQNNLAELWSLLNFIMPDIFADFEIFNKWFDFDSLNLGSGSNSEALNKLINDELQK 439
Query: 704 -----INAVLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAE 758
++ +L+P LLRR K + + LPPK + ++S++++ Y++ L
Sbjct: 440 NLISNLHTILKPFLLRRLKKVVLAN-----ILPPKREYIINCPMTSAQEKFYKAGL---N 491
Query: 759 NSVKEGLAKGDLLKNY 774
+K+ + K +L+K++
Sbjct: 492 GKLKKTMFK-ELIKDF 506
Score = 70.5 bits (171), Expect = 1e-11
Identities = 42/140 (30%), Positives = 70/140 (50%), Gaps = 5/140 (3%)
Query: 955 SPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDMKERTRILEQFHXXXXXX 1014
S G +++++SQF + LD++E + ++ DG ++ + R LE+F+
Sbjct: 617 SEGHKVLIYSQFVNMLDLIE----DWCDLNSFATFRIDGSVNNETRKDQLEKFNSSKDKH 672
Query: 1015 XXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDN 1074
G +G+NL A + D W+P ++ QA+DR HRIGQ+ V V R DN
Sbjct: 673 NIFLLSTRAAG-LGINLVGADTVVLFDSDWNPQVDLQAMDRCHRIGQESPVIVYRLCCDN 731
Query: 1075 SVEEKMLRIQERKRMLGDIV 1094
++E +L KR L +V
Sbjct: 732 TIEHVILTRAANKRNLERMV 751
>Hs21071058 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1052
Score = 87.4 bits (215), Expect = 1e-16
Identities = 83/311 (26%), Positives = 143/311 (45%), Gaps = 52/311 (16%)
Query: 480 GILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHD 539
GILADEMGLGKT+ ++L+ + K + P M
Sbjct: 201 GILADEMGLGKTLQTISLL-------GYMKHYRNIPGPHM-------------------- 233
Query: 540 TYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKDLRAYVLGPNAPSVIIT 599
++VP S L+ W SEF++ L+ C I VL P V +T
Sbjct: 234 --------VLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVT 285
Query: 600 TYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWILTGTPI 659
+Y ++ E S FN + +++DE H I+N ++ S+ V +++ + +LTGTP+
Sbjct: 286 SYEMLIKE---KSVFKKFNWRY--LVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPL 340
Query: 660 INRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQAFDVINAVLEPVLLRRTKNM 719
N L +L+SL+ FL + ++ + + + G+ + + ++ VL P LLRR K
Sbjct: 341 QNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGD-QKLVERLHMVLRPFLLRRIK-- 397
Query: 720 KDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGLAKGDLLKNYTNILV 779
DV+ SLPPK+ + + LS ++ Y +L + + K D ++ +L
Sbjct: 398 ADVE----KSLPPKKEVKIYVGLSKMQREWYTRILM-KDIDILNSAGKMDKMR----LLN 448
Query: 780 HILRLRQVCCH 790
+++LR+ C H
Sbjct: 449 ILMQLRKCCNH 459
Score = 80.9 bits (198), Expect = 1e-14
Identities = 57/182 (31%), Positives = 92/182 (50%), Gaps = 9/182 (4%)
Query: 933 HSHFQSTKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFD 992
H S K+ L + L +++E G ++++FSQ + LDILE + + D
Sbjct: 477 HLVTNSGKMVVLDKLLPKLKEQ--GSRVLIFSQMTRVLDILE----DYCMWRNYEYCRLD 530
Query: 993 GRLDMKERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQA 1052
G+ ER + ++ GG+G+NL A + D W+P ++ QA
Sbjct: 531 GQTPHDERQDSINAYNEPNSTKFVFMLSTRA-GGLGINLATADVVILYDSDWNPQVDLQA 589
Query: 1053 IDRIHRIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGDIV--EGDEAERRQKRIEEIQ 1110
+DR HRIGQ +TV+V RFI DN+VEE+++ E K L IV +G ++ +I + +
Sbjct: 590 MDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNKIGKDE 649
Query: 1111 ML 1112
ML
Sbjct: 650 ML 651
>YDR334w [R] KOG0391 SNF2 family DNA-dependent ATPase
Length = 1514
Score = 87.0 bits (214), Expect = 1e-16
Identities = 92/340 (27%), Positives = 159/340 (46%), Gaps = 80/340 (23%)
Query: 480 GILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHD 539
GILADEMGLGKTI ++L+ + ++ +
Sbjct: 717 GILADEMGLGKTIQTISLLAYLACEKEN-------------------------------- 744
Query: 540 TYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGN--NIKDLRAYVLGPNAPSVI 597
+ LIVVP S+L W+ EF++ K YYG+ K+ R P+A V
Sbjct: 745 ---WGPHLIVVPTSVLLNWEMEFKRFAPGFKVLT--YYGSPQQRKEKRKGWNKPDAFHVC 799
Query: 598 ITTYG-IIQSEYGRTSTSGLFNVVFFRIILDEGHTIRN-RSTRTSKAVIALRSSRKWILT 655
I +Y ++Q ++ + ++LDE H I+N RSTR +A++ + R+ +LT
Sbjct: 800 IVSYQLVVQDQHSFKRKRWQY------MVLDEAHNIKNFRSTRW-QALLNFNTQRRLLLT 852
Query: 656 GTPIINRLDDLFSLVQFL---------NLEPWSHINYWKRYVSVPFEK-----GNYAQAF 701
GTP+ N L +L+SL+ FL + ++ ++ ++++ P +K N+ Q
Sbjct: 853 GTPLQNNLAELWSLLYFLMPQTVIDGKKVSGFADLDAFQQWFGRPVDKIIETGQNFGQDK 912
Query: 702 DV------INAVLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLE 755
+ ++ VL P LLRR K DV+ + +P K + +LS ++ +Y +
Sbjct: 913 ETKKTVAKLHQVLRPYLLRRLK--ADVEKQ----MPAKYEHIVYCKLSKRQRFLYDDFMS 966
Query: 756 DAENSVKEGLAKGDLLKNYTNILVHILRLRQVCCHLDLLK 795
A+ K LA G N+ +I+ +++LR+VC H +L +
Sbjct: 967 RAQ--TKATLASG----NFMSIVNCLMQLRKVCNHPNLFE 1000
Score = 83.6 bits (205), Expect = 2e-15
Identities = 49/160 (30%), Positives = 86/160 (53%), Gaps = 10/160 (6%)
Query: 940 KIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDMKE 999
K++ L L+Q+++ G + ++F+Q + LD+LE L H + + DG +++
Sbjct: 1247 KLQKLAILLQQLKDN--GHRALIFTQMTKVLDVLEQFLNYH----GYLYMRLDGATKIED 1300
Query: 1000 RTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRI 1059
R + E+F+ +GG+G+NLT A D W+P M+ Q DR HRI
Sbjct: 1301 RQILTERFNTDSRITVFILSSR--SGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRI 1358
Query: 1060 GQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGDIV--EGD 1097
GQ + V + RF+ ++++E +L+ +KR L ++V EGD
Sbjct: 1359 GQTRDVHIYRFVSEHTIESNILKKANQKRQLDNVVIQEGD 1398
>SPAC20G8.08c [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 944
Score = 87.0 bits (214), Expect = 1e-16
Identities = 57/169 (33%), Positives = 89/169 (51%), Gaps = 10/169 (5%)
Query: 938 STKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDM 997
S K+K L LK+ + P E+I++FSQF+ LDILE L + + + DG +
Sbjct: 764 SAKVKKLCSLLKK---SRPNERILIFSQFTQVLDILEYVLNTL----DLEFLRLDGSTPV 816
Query: 998 KERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIH 1057
+ R ++++ FH +GG G+NLTCA+ + D ++P + QA DR H
Sbjct: 817 ETRQQLIDDFHTNENYKVFLLSTK--SGGFGINLTCANIVILFDCSFNPFDDMQAEDRAH 874
Query: 1058 RIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGDIVEGDEAERRQKRI 1106
R+GQ + V V R I N++EE + R+ K L + D +E+ QK I
Sbjct: 875 RVGQTRPVHVYRLITKNTIEENIRRLANTKLTLESSLTTD-SEKIQKEI 922
Score = 85.1 bits (209), Expect = 6e-16
Identities = 82/285 (28%), Positives = 123/285 (42%), Gaps = 55/285 (19%)
Query: 480 GILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHD 539
GILADEMGLGKT ++ + S+KE + Q++H
Sbjct: 435 GILADEMGLGKTCQVISFLA------------------SLKE----------KGIQNRH- 465
Query: 540 TYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKDL-RAYVLGPNAPSVII 598
L+VVP S L W EFEK L R E Y G + + + Y L V++
Sbjct: 466 -------LVVVPSSTLGNWLREFEKFCPSL--RVESYSGTQSERINKRYYLMDTDFDVLV 516
Query: 599 TTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWILTGTP 658
TTY + R S L F I DEGH ++NR + K ++ + ++ + ++TGTP
Sbjct: 517 TTYQLASGS--RDDRSFLRKQRFDISIFDEGHYLKNRMSERYKHLMNIPANFRLLITGTP 574
Query: 659 IINRLDDLFSLVQFL-------NLEPWSHINYWKRYVSVPFEKGNYAQ-AFDVINAVLEP 710
+ N L +L SL+ F+ N++ I K E+ +Q ++ P
Sbjct: 575 LQNNLKELISLLAFMLPKVFDNNMQGLDIIYKIKTTSDGDIERAYLSQERISRAKTIMNP 634
Query: 711 VLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLE 755
+LRR K L LPPK VE + ++ +Y S+LE
Sbjct: 635 FILRRRKE------NVLSDLPPKIQHVEYCHMEETQLSLYLSVLE 673
>YOR290c [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1703
Score = 86.7 bits (213), Expect = 2e-16
Identities = 89/330 (26%), Positives = 147/330 (43%), Gaps = 75/330 (22%)
Query: 480 GILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHD 539
GILADEMGLGKTI ++L+ T Y+ MK +
Sbjct: 788 GILADEMGLGKTIQTISLL-TYLYE--------------MKNIRGPY------------- 819
Query: 540 TYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKDLRAYVLGPNAPSVIIT 599
L++VP+S L+ W SEF K L+ N K +A + V++T
Sbjct: 820 -------LVIVPLSTLSNWSSEFAKWAPTLRTISFKGSPNERKAKQAKIRAGEF-DVVLT 871
Query: 600 TYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIA-LRSSRKWILTGTP 658
T+ I E S V + +I+DEGH ++N ++ S + + + ILTGTP
Sbjct: 872 TFEYIIKERALLS-----KVKWVHMIIDEGHRMKNAQSKLSLTLNTHYHADYRLILTGTP 926
Query: 659 IINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQAFDV-----------INAV 707
+ N L +L++L+ F+ + ++ + + + + PF ++ ++ V
Sbjct: 927 LQNNLPELWALLNFVLPKIFNSVKSFDEWFNTPFANTGGQDKIELSEEETLLVIRRLHKV 986
Query: 708 LEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLE-------DAENS 760
L P LLRR K KDV+ + LP K V K ++S+ ++ +YQ ML+ D N
Sbjct: 987 LRPFLLRRLK--KDVEKE----LPDKVEKVVKCKMSALQQIMYQQMLKYRRLFIGDQNNK 1040
Query: 761 VKEGLAKGDLLKNYTNILVHILRLRQVCCH 790
G L+ + N I++L+++C H
Sbjct: 1041 KMVG------LRGFNN---QIMQLKKICNH 1061
Score = 75.1 bits (183), Expect = 6e-13
Identities = 51/174 (29%), Positives = 87/174 (49%), Gaps = 8/174 (4%)
Query: 940 KIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDMKE 999
K + L R L +++ T G ++++F Q + +DI+E LR + + DG E
Sbjct: 1088 KFELLDRILPKLKAT--GHRVLIFFQMTQIMDIMEDFLRYI----NIKYLRLDGHTKSDE 1141
Query: 1000 RTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRI 1059
R+ +L F+ GG+GLNL A + D W+P + QA DR HRI
Sbjct: 1142 RSELLRLFNAPDSEYLCFILSTRA-GGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRI 1200
Query: 1060 GQQQTVKVVRFIIDNSVEEKML-RIQERKRMLGDIVEGDEAERRQKRIEEIQML 1112
GQ+ V+++R I NSVEE +L R ++ + G +++ + + + E+ +L
Sbjct: 1201 GQKNEVRILRLITTNSVEEVILERAYKKLDIDGKVIQAGKFDNKSTSEEQEALL 1254
>Hs21071050 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1568
Score = 86.7 bits (213), Expect = 2e-16
Identities = 93/329 (28%), Positives = 149/329 (45%), Gaps = 73/329 (22%)
Query: 480 GILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHD 539
GILADEMGLGKTI +ALI +HK
Sbjct: 741 GILADEMGLGKTIQTIALITYLM--------------------------------EHKRL 768
Query: 540 TYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKDLRAYV--LGPNAPSVI 597
Y LI+VP+S L+ W EF+K + K I Y R+ V L +V+
Sbjct: 769 NGPY---LIIVPLSTLSNWTYEFDKWAPSVVK---ISYKGTPAMRRSLVPQLRSGKFNVL 822
Query: 598 ITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIA-LRSSRKWILTG 656
+TTY EY L + + +I+DEGH ++N + ++ + + R+ +LTG
Sbjct: 823 LTTY-----EYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTG 877
Query: 657 TPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPF----EKGNYAQAFDV-----INAV 707
TP+ N+L +L++L+ FL + + ++++ + PF E+ + + + ++ V
Sbjct: 878 TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKV 937
Query: 708 LEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSM------LEDAENSV 761
L P LLRR K K+V+ + LP K V K +S+ +K +Y+ M L D
Sbjct: 938 LRPFLLRRLK--KEVESQ----LPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKD 991
Query: 762 KEGLAKGDLLKNYTNILVHILRLRQVCCH 790
K+G L N I++LR++C H
Sbjct: 992 KKGKGGAKTLMN------TIMQLRKICNH 1014
Score = 72.4 bits (176), Expect = 4e-12
Identities = 56/187 (29%), Positives = 87/187 (45%), Gaps = 12/187 (6%)
Query: 901 NCPYCRMPISEANVLKLKEPIDAERGYELISFHSHFQSTKIKALLRHLKQIQETSPGEQI 960
N PY I E+ L G EL + S K + L R L +++ T+ ++
Sbjct: 1013 NHPYMFQHIEESFAEHLGYSNGVINGAEL-----YRASGKFELLDRILPKLRATN--HRV 1065
Query: 961 IVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDMKERTRILEQFHXXXXXXXXXXXX 1020
++F Q +S + I+E + + + DG ++R +L++F+
Sbjct: 1066 LLFCQMTSLMTIME----DYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLS 1121
Query: 1021 XXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSVEEKM 1080
GG+GLNL A + D W+P + QA DR HRIGQQ V+V+R NSVEEK+
Sbjct: 1122 TRA-GGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKI 1180
Query: 1081 LRIQERK 1087
L + K
Sbjct: 1181 LAAAKYK 1187
>Hs21071048 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1586
Score = 86.7 bits (213), Expect = 2e-16
Identities = 93/329 (28%), Positives = 149/329 (45%), Gaps = 73/329 (22%)
Query: 480 GILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHD 539
GILADEMGLGKTI +ALI +HK
Sbjct: 741 GILADEMGLGKTIQTIALITYLM--------------------------------EHKRL 768
Query: 540 TYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKDLRAYV--LGPNAPSVI 597
Y LI+VP+S L+ W EF+K + K I Y R+ V L +V+
Sbjct: 769 NGPY---LIIVPLSTLSNWTYEFDKWAPSVVK---ISYKGTPAMRRSLVPQLRSGKFNVL 822
Query: 598 ITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIA-LRSSRKWILTG 656
+TTY EY L + + +I+DEGH ++N + ++ + + R+ +LTG
Sbjct: 823 LTTY-----EYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTG 877
Query: 657 TPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPF----EKGNYAQAFDV-----INAV 707
TP+ N+L +L++L+ FL + + ++++ + PF E+ + + + ++ V
Sbjct: 878 TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKV 937
Query: 708 LEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSM------LEDAENSV 761
L P LLRR K K+V+ + LP K V K +S+ +K +Y+ M L D
Sbjct: 938 LRPFLLRRLK--KEVESQ----LPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKD 991
Query: 762 KEGLAKGDLLKNYTNILVHILRLRQVCCH 790
K+G L N I++LR++C H
Sbjct: 992 KKGKGGAKTLMN------TIMQLRKICNH 1014
Score = 72.4 bits (176), Expect = 4e-12
Identities = 56/187 (29%), Positives = 87/187 (45%), Gaps = 12/187 (6%)
Query: 901 NCPYCRMPISEANVLKLKEPIDAERGYELISFHSHFQSTKIKALLRHLKQIQETSPGEQI 960
N PY I E+ L G EL + S K + L R L +++ T+ ++
Sbjct: 1013 NHPYMFQHIEESFAEHLGYSNGVINGAEL-----YRASGKFELLDRILPKLRATN--HRV 1065
Query: 961 IVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDMKERTRILEQFHXXXXXXXXXXXX 1020
++F Q +S + I+E + + + DG ++R +L++F+
Sbjct: 1066 LLFCQMTSLMTIME----DYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLS 1121
Query: 1021 XXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSVEEKM 1080
GG+GLNL A + D W+P + QA DR HRIGQQ V+V+R NSVEEK+
Sbjct: 1122 TRA-GGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKI 1180
Query: 1081 LRIQERK 1087
L + K
Sbjct: 1181 LAAAKYK 1187
>Hs14149730 [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 1026
Score = 86.7 bits (213), Expect = 2e-16
Identities = 65/226 (28%), Positives = 105/226 (45%), Gaps = 39/226 (17%)
Query: 904 YCRMPISEANVLKLKEPIDAERGYELI--------SFHSH-------------------F 936
Y + E + L LKEP E +LI F H
Sbjct: 792 YTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLIL 851
Query: 937 QSTKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLD 996
S K + L L ++++ G+++++FSQF+ LDILE+ L+ H R + DG+
Sbjct: 852 DSGKFRVLGCILSELKQK--GDRVVLFSQFTMMLDILEVLLKHHQHR----YLRLDGKTQ 905
Query: 997 MKERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRI 1056
+ ER ++++F+ GG+G+NLT A+ + D +P + QA DR
Sbjct: 906 ISERIHLIDEFNTDMDIFVFLLSTKA--GGLGINLTSANVVILHDIDCNPYNDKQAEDRC 963
Query: 1057 HRIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGD----IVEGDE 1098
HR+GQ + V V++ I ++EE ML+I ++K L + EGDE
Sbjct: 964 HRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDE 1009
Score = 75.9 bits (185), Expect = 3e-13
Identities = 84/324 (25%), Positives = 138/324 (41%), Gaps = 70/324 (21%)
Query: 480 GILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHD 539
GILADEMGLGKTI A+A + Y E + + H
Sbjct: 518 GILADEMGLGKTIQAIAFLAYL-YQEGN-------------------------NGPH--- 548
Query: 540 TYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNI--KDLRAYVLGPNAP-SV 596
LIVVP S ++ W E LK C YYG+ K +R + +V
Sbjct: 549 -------LIVVPASTIDNWLREVNLWCPTLKVLC--YYGSQEERKQIRFNIHSRYEDYNV 599
Query: 597 IITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWILTG 656
I+TTY S S + + I DEGH ++N + + ++ + ++ + +LTG
Sbjct: 600 IVTTYNCAISSSDDRSLFRRLKLNY--AIFDEGHMLKNMGSIRYQHLMTINANNRLLLTG 657
Query: 657 TPIINRLDDLFSLVQFLNLEPW-SHINYWKRYVSVP---------FEKGNYAQAFDVINA 706
TP+ N L +L SL+ F+ + S + +R S +EK A A
Sbjct: 658 TPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHA----KQ 713
Query: 707 VLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGLA 766
+++P +LRR K + L LPPK+ +E +S ++++Y + + S+
Sbjct: 714 IIKPFILRRVKE------EVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINN--- 764
Query: 767 KGDLLKNYTNILVHILRLRQVCCH 790
L+ T + +++LR++ H
Sbjct: 765 ----LEKNTEMCNVMMQLRKMANH 784
>ECU01g0350 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1251
Score = 86.7 bits (213), Expect = 2e-16
Identities = 91/326 (27%), Positives = 151/326 (45%), Gaps = 72/326 (22%)
Query: 481 ILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHDT 540
I+ADEMGLGKT+ ++ I T K+D
Sbjct: 324 IMADEMGLGKTVQSVTFINTLFT---------------------------------KYDY 350
Query: 541 YAYRTTLIVVPMSLLNQWQSEFEKANKDLK--KRCEIYYGNNIKDLRAYVLGPNAPS--- 595
A L+V P+S++ W+ EFE A DL+ K E G + +VL N
Sbjct: 351 CA--PVLVVTPLSIIPHWEREFE-AWTDLRVLKYHENRPGRALIAEYEFVLKKNNLEIRL 407
Query: 596 --VIITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWI 653
V+ITTY + +E S F+V F DE H ++N ++ + + L+ + K +
Sbjct: 408 FDVLITTYDTVMAEQEHLSQFH-FSVGIF----DEAHRLKNAKSKAATILRTLKFNHKVL 462
Query: 654 LTGTPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQA----FDVINAVLE 709
L+GTP+ N + +L+SL+ F++ R+ S+P G + + + +L
Sbjct: 463 LSGTPLQNNISELWSLLNFIDP---------MRFSSLPHFLGEFKMENINDVEKLQGLLR 513
Query: 710 PVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGLAKGD 769
P++LRR K +DV+ S+P KE + ++ L+ +KR Y+++LE E L KG
Sbjct: 514 PLMLRRMK--EDVE----KSIPTKEETIIEVALTMIQKRFYRAILE----KNIEFLTKGG 563
Query: 770 LLKNYTNILVHILRLRQVCCHLDLLK 795
++ N+L ++ LR+ C H L+K
Sbjct: 564 -KESAPNLLNVMMELRKCCIHPYLIK 588
Score = 63.9 bits (154), Expect = 1e-09
Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 5/132 (3%)
Query: 949 KQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDMKERTRILEQFH 1008
K + + G ++++FSQ + LD+L +L + + DG + R +++F
Sbjct: 656 KLLGKLKDGHKVLIFSQMTRCLDLLA----EYLAYRKYKYERIDGGARTENRQAAIDRF- 710
Query: 1009 XXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVV 1068
GGVG+NLT A + D W+P + QA R HRIGQ VKV
Sbjct: 711 SDKTSDVFVFLLSTRAGGVGINLTAADTVIIFDSDWNPQNDLQAQARCHRIGQTSEVKVY 770
Query: 1069 RFIIDNSVEEKM 1080
R + +N+ E +M
Sbjct: 771 RLVTENTYEREM 782
>YBR245c [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1129
Score = 86.3 bits (212), Expect = 2e-16
Identities = 85/315 (26%), Positives = 143/315 (44%), Gaps = 57/315 (18%)
Query: 480 GILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHD 539
GILADEMGLGKT+ ++ + Y IE P
Sbjct: 217 GILADEMGLGKTLQTISFLGYLRY-------IEKIPGPF--------------------- 248
Query: 540 TYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKDLRAYVLGPNAPS---- 595
L++ P S LN W E + D+ I G+ K+ RA ++
Sbjct: 249 -------LVIAPKSTLNNWLREINRWTPDVN--AFILQGD--KEERAELIQKKLLGCDFD 297
Query: 596 VIITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWILT 655
V+I +Y II E S L + + II+DE H I+N + S+ + S + ++T
Sbjct: 298 VVIASYEIIIRE-----KSPLKKINWEYIIIDEAHRIKNEESMLSQVLREFTSRNRLLIT 352
Query: 656 GTPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQAFDVINAVLEPVLLRR 715
GTP+ N L +L++L+ FL + +S + + S + + + ++ VL+P LLRR
Sbjct: 353 GTPLQNNLHELWALLNFLLPDIFSDAQDFDDWFSSESTEEDQDKIVKQLHTVLQPFLLRR 412
Query: 716 TKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGLAKGDLLKNYT 775
K+ DV+ SL PK+ + + +SS +K+ Y+ +LE ++V ++ T
Sbjct: 413 IKS--DVE----TSLLPKKELNLYVGMSSMQKKWYKKILEKDLDAVN---GSNGSKESKT 463
Query: 776 NILVHILRLRQVCCH 790
+L +++LR+ C H
Sbjct: 464 RLLNIMMQLRKCCNH 478
Score = 85.9 bits (211), Expect = 3e-16
Identities = 53/162 (32%), Positives = 86/162 (52%), Gaps = 7/162 (4%)
Query: 933 HSHFQSTKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFD 992
H + + K++ L + LK+++E G ++++FSQ S LDILE + + D
Sbjct: 496 HLVYNAAKLQVLDKLLKKLKEE--GSRVLIFSQMSRLLDILE----DYCYFRNYEYCRID 549
Query: 993 GRLDMKERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQA 1052
G ++R + ++ ++ GG+G+NLT A + D W+P + QA
Sbjct: 550 GSTAHEDRIQAIDDYNAPDSKKFVFLLTTRA-GGLGINLTSADVVVLYDSDWNPQADLQA 608
Query: 1053 IDRIHRIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGDIV 1094
+DR HRIGQ++ VKV R + DNSVEEK+L +K L +V
Sbjct: 609 MDRAHRIGQKKQVKVFRLVTDNSVEEKILERATQKLRLDQLV 650
>SPBC1826.01c [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 635
Score = 86.3 bits (212), Expect = 2e-16
Identities = 92/336 (27%), Positives = 145/336 (42%), Gaps = 62/336 (18%)
Query: 480 GILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHD 539
GIL D+MGLGKT+ + ++ + Y+ +K E + P
Sbjct: 61 GILCDDMGLGKTLQTICIVASDHYNR--QKLFEESGSPK--------------------- 97
Query: 540 TYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKDLRAYVLGPNAPS-VII 598
+A+ +LIV P +L WQ E LK Y G + RA + S V++
Sbjct: 98 -FAHVPSLIVCPSTLAGHWQQELSTYAPFLK--VSAYVGPPAE--RAKIRSKMKKSDVVV 152
Query: 599 TTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWILTGTP 658
T+Y I R L + + +LDEGH I+N + +KAV +LRS + IL+GTP
Sbjct: 153 TSYDIC-----RNDVDELVKIDWNYCVLDEGHVIKNARAKLTKAVKSLRSYHRLILSGTP 207
Query: 659 IINRLDDLFSLVQFLNLE-PWSHINYWKRYV----------SVPFEKGNYAQAFDVINAV 707
I N + +L+SL FL + + +R+V S E+ A + I+
Sbjct: 208 IQNNVLELWSLFDFLMPGFLGTEKTFQERFVRPIAASRDAKSSSKERERGTLALEAIHKQ 267
Query: 708 LEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSM---------LEDAE 758
+ P +LRR K +DV L LPPK + +S ++++ LED E
Sbjct: 268 VLPFMLRRLK--EDV----LADLPPKIIQDYYCDMSDLQRKLLNDFVSQLNINEELEDDE 321
Query: 759 NSVKEGLAKGDLLKNYTNILVHILRLRQVCCHLDLL 794
+G K K +I + +R++C H L+
Sbjct: 322 TEKTQGTRKKKSQK--AHIFQALQYMRKLCNHPALI 355
Score = 67.4 bits (163), Expect = 1e-10
Identities = 41/136 (30%), Positives = 68/136 (49%), Gaps = 3/136 (2%)
Query: 959 QIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDMKERTRILEQFHXXXXXXXXXX 1018
++++F Q LD++E +L D V + DG ++ +R + +F+
Sbjct: 420 RVLIFCQLKDMLDMVEKDLLQATMPD-VTYMRLDGSVEPTKRQEAVTKFNNDPSIDVLLL 478
Query: 1019 XXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSVEE 1078
GG+GLNLT A ++ W+P + QA+DR HRIGQ++ V V R I +EE
Sbjct: 479 TTH--VGGLGLNLTGADTVIFVEHDWNPMRDLQAMDRAHRIGQKKVVNVYRLITRGCLEE 536
Query: 1079 KMLRIQERKRMLGDIV 1094
K++ +Q K + V
Sbjct: 537 KIMGLQRFKMNVASTV 552
>ECU03g1530 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 1256
Score = 86.3 bits (212), Expect = 2e-16
Identities = 80/296 (27%), Positives = 130/296 (43%), Gaps = 71/296 (23%)
Query: 480 GILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHD 539
GILAD+MGLGKT+ L +C+ Y
Sbjct: 818 GILADDMGLGKTLQVLTFLCSEIYK----------------------------------- 842
Query: 540 TYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKDLRAYVLGPNAPSVIIT 599
R L++ P SL W+SE +K + EIY +D Y S++I+
Sbjct: 843 --TNRKVLVICPSSLTGHWKSEVKKFFPFVA--AEIY---KREDRDTY-------SILIS 888
Query: 600 TYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWILTGTPI 659
+Y +++Y +F +++DEGH +RN+ T + +R SRK +LTGTP+
Sbjct: 889 SYETFRNDY-----LNFIEKDWFYVVVDEGHVLRNKQTILYSRMNMIRCSRKMVLTGTPV 943
Query: 660 INRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYA-----QAFDVINAVLEPVLLR 714
N ++DL SL FL ++I K Y S+ + + + D+++ + P +LR
Sbjct: 944 HNSVEDLISLFNFLMP---NYIGPEKEYGSLNVKMSDSEIEKTHKRLDLLHRKVLPFILR 1000
Query: 715 RTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGLAKGDL 770
R K +D L LPPK + ++L ++++Y+ E E KE L +L
Sbjct: 1001 RLK----ID--VLKDLPPKIIRDITVELGPVQEKLYR---EIDEKGGKESLGDAEL 1047
Score = 86.3 bits (212), Expect = 2e-16
Identities = 54/168 (32%), Positives = 91/168 (54%), Gaps = 11/168 (6%)
Query: 930 ISFHSHFQ-STKIKALLRHLKQIQETSPGE----QIIVFSQFSSFLDILEIELRSHLPRD 984
+S HF+ ST++ ++ L+ I GE +I++F QF S +D++ ++ + +
Sbjct: 1069 VSHIGHFKDSTEVSCKVKALEDIISLCGGEDLGSKILIFFQFKSTIDLV---IKDIMKKY 1125
Query: 985 QVIIYKFDGRLDMKERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWW 1044
+ + DG + RT+I E+F+ GG+GLNLT A M + W
Sbjct: 1126 KFKYSRLDGSVPSAARTKIAEEFNTGTTQMLFLTTQ---VGGLGLNLTGADTVVMYEHDW 1182
Query: 1045 SPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGD 1092
+P + QA+DR HRIGQ++TV V RFI N++EEK++ +Q K + +
Sbjct: 1183 NPFNDLQAMDRAHRIGQKRTVNVFRFIARNTLEEKVMNLQSFKMFVAN 1230
>CE27114 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2
and related ATPases (DNA/RNA helicase superfamily)
Length = 1336
Score = 86.3 bits (212), Expect = 2e-16
Identities = 87/325 (26%), Positives = 153/325 (46%), Gaps = 72/325 (22%)
Query: 480 GILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHD 539
GILADEMGLGKTI +A I + +I+ T P
Sbjct: 387 GILADEMGLGKTIQTIAFI-------TYLMEIKKTSGPF--------------------- 418
Query: 540 TYAYRTTLIVVPMSLLNQWQSEFEK--ANKDLKKRCEIYYGNNIKDLRAY--VLGPNAPS 595
L++VP+S + WQ+EF+K AN L I Y + + + ++ +
Sbjct: 419 -------LVIVPLSTVPNWQNEFDKWAANVHL-----IAYKGPKETRKVFEPIIKSGKFN 466
Query: 596 VIITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAV-IALRSSRKWIL 654
V++TT+ EY + L + + +I+DEGH ++N+ + ++ + + R+ ++
Sbjct: 467 VLLTTF-----EYVIREKALLGKLRWKYMIIDEGHRLKNQHCKLTEMLNTRFQCQRRLLI 521
Query: 655 TGTPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPF----EKGNYAQAFDV-----IN 705
TGTP+ N+L +L++L+ FL +S + ++++ + PF EK Q + ++
Sbjct: 522 TGTPLQNKLPELWALLNFLLPSIFSSCSTFEQWFNAPFATTGEKVELTQEETMLIIRRLH 581
Query: 706 AVLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGL 765
VL P LLRR K K+V+ + LP K V + +S+ +K +Y+ M + K
Sbjct: 582 KVLRPFLLRRLK--KEVESE----LPDKMEFVVRCDMSALQKVLYKHMQKGLLLDGKTNT 635
Query: 766 AKGDLLKNYTNILVHILRLRQVCCH 790
K+ N ++H LR++C H
Sbjct: 636 GS----KSLRNTMIH---LRKLCNH 653
Score = 77.8 bits (190), Expect = 9e-14
Identities = 54/176 (30%), Positives = 87/176 (48%), Gaps = 8/176 (4%)
Query: 938 STKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDM 997
S K++ L R L ++Q T G ++++F Q +S + I+E L + + DG
Sbjct: 682 SGKLELLSRILPKLQAT--GHRVLMFFQMTSMMTIVE----DFLAGGTIQYLRLDGSTKP 735
Query: 998 KERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIH 1057
ER +L++F+ GG+GLNL A + D W+P + QA DR H
Sbjct: 736 DERGALLDKFNAPNSEYFLFMLSTRA-GGLGLNLQTADTVIIFDSDWNPHQDMQAQDRAH 794
Query: 1058 RIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGD-IVEGDEAERRQKRIEEIQML 1112
RIGQ+ V+V R I NSVEEK+L K + + +++ + + R E ++L
Sbjct: 795 RIGQKAEVRVFRLITANSVEEKILAAARYKLNVDEKVIQAGKFDNRSTGAERREIL 850
>CE16277 [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 1038
Score = 86.3 bits (212), Expect = 2e-16
Identities = 82/306 (26%), Positives = 139/306 (44%), Gaps = 60/306 (19%)
Query: 481 ILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHDT 540
IL DEMGLGKTI +A + ++ K+I T H
Sbjct: 416 ILGDEMGLGKTIQIVAFL-------SYLKQIGKT-------------------GPH---- 445
Query: 541 YAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNI--KDLRAYVLGPNAP-SVI 597
LIVVP S + W EF K ++ YYG+ K LR V VI
Sbjct: 446 ------LIVVPSSTIENWIGEFHKWCPSIQLLT--YYGSQDERKHLRHRVKKQKDHIDVI 497
Query: 598 ITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWILTGT 657
+TTY ++ S+ F++ + +I DEGH ++N + + ++ ++ +K +LTGT
Sbjct: 498 LTTYNMVTSKSDDKKFFKNFSLNY--VIYDEGHMLKNCDSERYRGLMKVKGKKKILLTGT 555
Query: 658 PIINRLDDLFSLVQFL-------NLEPWSHINYWKRYVSVPFEKGNYA----QAFDVINA 706
P+ N L +L SL+ F+ E +H+ + + + N A + A
Sbjct: 556 PLQNNLIELISLMYFVLSKVFNKYCEDITHLLQHFKQLGPALDTKNKALYQQDRIEEAKA 615
Query: 707 VLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGLA 766
+L+P +LRR KN + L SLP K + ++++ +K++Y +++E + S + G +
Sbjct: 616 ILQPYILRRLKN------QVLGSLPSKSEQIIEVEMKKPQKQLYDNIVEALQQSEESGDS 669
Query: 767 KGDLLK 772
G L++
Sbjct: 670 YGSLMR 675
Score = 73.2 bits (178), Expect = 2e-12
Identities = 48/154 (31%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 937 QSTKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLD 996
+S K + L L +IQ+ G+++++FSQF+S LDILE+ L + DG+
Sbjct: 751 KSGKCEQLDVMLPEIQKK--GDKVLIFSQFTSMLDILEVYLNIR----GYSYKRLDGQTP 804
Query: 997 MKERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRI 1056
+ +R ++ +F+ GG+G+NLT A+ + D ++P + QA DR
Sbjct: 805 VLDRQEMINEFNLSKDLFVFLLSTRA--GGLGINLTSANHIIIHDIDFNPYNDKQAEDRC 862
Query: 1057 HRIGQQQTVKVVRFIIDNSVEEKMLRIQERKRML 1090
HR+GQ++ V V R + +VE ML + ++K L
Sbjct: 863 HRMGQEKPVHVTRLVSKGTVEVGMLALAKKKLQL 896
>At3g06400 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1057
Score = 86.3 bits (212), Expect = 2e-16
Identities = 85/323 (26%), Positives = 147/323 (45%), Gaps = 60/323 (18%)
Query: 472 VIKTIING--GILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSS 529
+I+ NG GILADEMGLGKT+ ++L+ A+ + P M
Sbjct: 200 LIRLYENGINGILADEMGLGKTLQTISLL-------AYLHEYRGINGPHM---------- 242
Query: 530 PLRHSQHKHDTYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGN--NIKDLRAY 587
+V P S L W +E + L R + GN + +R
Sbjct: 243 ------------------VVAPKSTLGNWMNEIRRFCPVL--RAVKFLGNPEERRHIRED 282
Query: 588 VLGPNAPSVIITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALR 647
+L + +T++ + E + L + II+DE H I+N ++ SK +
Sbjct: 283 LLVAGKFDICVTSFEMAIKE-----KTALRRFSWRYIIIDEAHRIKNENSLLSKTMRLFS 337
Query: 648 SSRKWILTGTPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQAFDVINAV 707
++ + ++TGTP+ N L +L++L+ FL E +S + + + E + + ++ V
Sbjct: 338 TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGE-NDQQEVVQQLHKV 396
Query: 708 LEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGLAK 767
L P LLRR K+ DV+ LPPK+ + K+ +S +K+ Y+++L+ +V G +
Sbjct: 397 LRPFLLRRLKS--DVE----KGLPPKKETILKVGMSQMQKQYYKALLQKDLEAVNAGGER 450
Query: 768 GDLLKNYTNILVHILRLRQVCCH 790
LL NI ++LR+ C H
Sbjct: 451 KRLL----NI---AMQLRKCCNH 466
Score = 75.5 bits (184), Expect = 4e-13
Identities = 47/156 (30%), Positives = 82/156 (52%), Gaps = 7/156 (4%)
Query: 959 QIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDMKERTRILEQFHXXXXXXXXXX 1018
++++FSQ + LDILE +L + + DG ER +E ++
Sbjct: 508 RVLIFSQMTRLLDILE----DYLMYRGYLYCRIDGNTGGDERDASIEAYNKPGSEKFVFL 563
Query: 1019 XXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSVEE 1078
GG+G+NL A + D W+P ++ QA DR HRIGQ++ V+V RF ++++EE
Sbjct: 564 LSTRA-GGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTESAIEE 622
Query: 1079 KMLRIQERKRMLGDIV--EGDEAERRQKRIEEIQML 1112
K++ +K L +V +G AE++ K + + ++L
Sbjct: 623 KVIERAYKKLALDALVIQQGRLAEQKSKSVNKDELL 658
>SPAC3G6.01 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1388
Score = 85.9 bits (211), Expect = 3e-16
Identities = 86/313 (27%), Positives = 142/313 (44%), Gaps = 68/313 (21%)
Query: 480 GILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHD 539
GILADEMGLGKT+ +A + S L HS +H
Sbjct: 396 GILADEMGLGKTVQTVAFL------------------------------SYLAHSLRQHG 425
Query: 540 TYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNN-----IKDLRAYVLGPNAP 594
+ L+VVP+S + WQ D+ C Y GN I+D YV G
Sbjct: 426 PF-----LVVVPLSTVPAWQETLALWASDMN--CISYLGNTTSRQVIRDYEFYVDGTQKI 478
Query: 595 --SVIITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKW 652
++++TTY EY S L N+ + + +DE H ++N + +A+ ++S +
Sbjct: 479 KFNLLLTTY-----EYVLKDRSVLSNIKWQYMAIDEAHRLKNSESSLYEALSQFKNSNRL 533
Query: 653 ILTGTPIINRLDDLFSLVQFL---NLEPWSHINYWKRYVSVPFEKGN-YAQAFDVINAVL 708
++TGTP+ N + +L +LV FL E IN + P E+ Y ++ + L
Sbjct: 534 LITGTPLQNNIRELAALVDFLMPGKFEIREEIN-----LEAPDEEQEAYIRS---LQEHL 585
Query: 709 EPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGLAKG 768
+P +LRR K KDV+ SLP K + +++LS + Y+++L + + ++ G
Sbjct: 586 QPYILRRLK--KDVE----KSLPSKSERILRVELSDLQMYWYKNILTRNYRVLTQSISSG 639
Query: 769 DLLKNYTNILVHI 781
+ + NI+V +
Sbjct: 640 SQI-SLLNIVVEL 651
Score = 60.5 bits (145), Expect = 1e-08
Identities = 40/136 (29%), Positives = 65/136 (47%), Gaps = 9/136 (6%)
Query: 957 GEQIIVFSQFSSFLDILE--IELRSHLPRDQVIIYKFDGRLDMKERTRILEQFHXXXXXX 1014
G ++++FSQ LDIL + LR + + + DG + R ++ F+
Sbjct: 706 GHRVLIFSQMVRMLDILGDYLSLRGYPHQ------RLDGTVPAAVRRTSIDHFNAPNSPD 759
Query: 1015 XXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDN 1074
GG+G+NL A + D W+P + QA+ R HRIGQ+ V V R + +
Sbjct: 760 FVFLLSTRA-GGLGINLMTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLLSKD 818
Query: 1075 SVEEKMLRIQERKRML 1090
++EE +L RK +L
Sbjct: 819 TIEEDVLERARRKMIL 834
>Hs13376715 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 336
Score = 85.9 bits (211), Expect = 3e-16
Identities = 70/265 (26%), Positives = 136/265 (50%), Gaps = 41/265 (15%)
Query: 547 LIVVPMSLLNQWQSEFEK-------------ANKDLKKRCEIYYGNNIKDLRAYVL-GPN 592
LI+ P+S + W+ EF ++ + ++ E+Y+ +D + ++ G
Sbjct: 26 LIIAPLSTIANWEREFRTWTDINVVVYHGSLISRQMIQQYEMYF----RDSQGRIIRGAY 81
Query: 593 APSVIITTYGIIQSEYGRTSTSGLFNVVFFR-IILDEGHTIRNRSTRTSKAVIALRSSRK 651
IITT+ +I G N + +R +I+DE H ++N++ + + + + K
Sbjct: 82 RFQAIITTFEMILGGCGE------LNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHK 135
Query: 652 WILTGTPIINRLDDLFSLVQFLN-LEPWSHINYWKRYVSVPFEKGNYAQAFDVINAVLEP 710
+LTGTP+ N +++LFSL+ FL L S + + + + E + + A+L+P
Sbjct: 136 VLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGDLETE-----EQVQKLQAILKP 190
Query: 711 VLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGLAKGDL 770
++LRR K +DV+ K L PKE + +++L++ +K+ Y+++LE + L+KG
Sbjct: 191 MMLRRLK--EDVEKK----LAPKEETIIEVELTNIQKKYYRAILEKNFSF----LSKGAG 240
Query: 771 LKNYTNILVHILRLRQVCCHLDLLK 795
N N++ ++ LR+ C H L+K
Sbjct: 241 QTNVPNLVNTMMELRKCCNHPYLIK 265
>ECU09g0410 [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26
(contains SNF2 family DNA-dependent ATPase domain)
Length = 695
Score = 85.1 bits (209), Expect = 6e-16
Identities = 85/328 (25%), Positives = 150/328 (44%), Gaps = 84/328 (25%)
Query: 479 GGILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKH 538
GG+LAD+MGLGKTI + + L HS+
Sbjct: 171 GGVLADDMGLGKTIQVIVFL------------------------------GALLHSR--- 197
Query: 539 DTYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKDLRAYVLGPNAPSVII 598
LI+ P ++++QW E+++ ++ I++G +D
Sbjct: 198 ---VVSKALILCPATIVSQWMDEWKRFYPFVR----IFFGFPNEDCE------------- 237
Query: 599 TTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWILTGTP 658
G+ Y + +G+ N ++ +ILDEGH I+N++ + + +V RS +++L+GTP
Sbjct: 238 ---GVYLMSYEKFK-AGVKNFLWDVLILDEGHRIKNKNAQITLSVKKARSRGRFVLSGTP 293
Query: 659 IINRLDDLFSLVQFLNLE-PWSHINYWKRYVSVPFEKGNYAQAFD-----------VINA 706
I N L +L+S+ F+N SH ++ + + V +G Y A + ++ +
Sbjct: 294 IQNNLGELWSIFDFVNPGLLGSHTSFNEEFEEV-IRRGGYRNASNLQVEKAYRHSLMLRS 352
Query: 707 VLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGLA 766
++EP +LRRTK+ V K LP KE + L+ ++ +Y +LE +++ +K
Sbjct: 353 LIEPYILRRTKS--QVSHK----LPSKEDKIVFCSLTPAQIELYNRVLE-SKHIMK---- 401
Query: 767 KGDLLKNYTNILVHILRLRQVCCHLDLL 794
+L N+L I LR+VC H LL
Sbjct: 402 ---VLTGKANLLSGISMLRKVCNHPRLL 426
Score = 84.0 bits (206), Expect = 1e-15
Identities = 57/169 (33%), Positives = 91/169 (53%), Gaps = 15/169 (8%)
Query: 923 AERGYELISFHSHFQSTKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLP 982
A+ Y+L+S S KIK L+ LK+ + S G +++VFSQ LDI+E +R +
Sbjct: 457 ADVSYDLVS-----SSCKIKILVDLLKKWR--SEGNKVLVFSQTIRMLDIIERCVRKYT- 508
Query: 983 RDQVIIYKFDGRLDMKERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDP 1042
+ DGR R ++++F+ GG+GLNLT ASR + DP
Sbjct: 509 -----YLRMDGRTPTSSRPGLVDRFNEDEDVFLFLLTTK--VGGLGLNLTGASRIVIYDP 561
Query: 1043 WWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLG 1091
W+P + QA +R R GQ++ V++ RF+ +++EEK+ + Q K +LG
Sbjct: 562 DWNPSTDTQAKERAWRYGQKKGVEIYRFVCKDTIEEKVYQKQIFKDLLG 610
>YOR304w [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1120
Score = 84.7 bits (208), Expect = 7e-16
Identities = 85/319 (26%), Positives = 148/319 (45%), Gaps = 65/319 (20%)
Query: 480 GILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHD 539
GILADEMGLGKT+ ++ + Y K+IE
Sbjct: 205 GILADEMGLGKTLQTISFLGYLRY----VKQIEGP------------------------- 235
Query: 540 TYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKDLRAYVLG----PNAPS 595
LI+VP S L+ W+ EF K ++ + +G+ KD RA ++
Sbjct: 236 ------FLIIVPKSTLDNWRREFLKWTPNVNVL--VLHGD--KDTRADIVRNIILEARFD 285
Query: 596 VIITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWILT 655
V+IT+Y ++ E + L + + I++DE H I+N + S+ + S + ++T
Sbjct: 286 VLITSYEMVIRE-----KNALKRLAWQYIVIDEAHRIKNEQSALSQIIRLFYSKNRLLIT 340
Query: 656 GTPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQAFDVI----NAVLEPV 711
GTP+ N L +L++L+ FL + + + + FE+ N Q +++ ++VL P
Sbjct: 341 GTPLQNNLHELWALLNFLLPDIFGDSELFDEW----FEQNNSEQDQEIVIQQLHSVLNPF 396
Query: 712 LLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGLAKGDLL 771
LLRR K DV+ SL PK + ++ + + Y+S+LE ++V + K +
Sbjct: 397 LLRRVK--ADVE----KSLLPKIETNVYVGMTDMQIQWYKSLLEKDIDAVNGAVGKRE-- 448
Query: 772 KNYTNILVHILRLRQVCCH 790
T +L +++LR+ C H
Sbjct: 449 -GKTRLLNIVMQLRKCCNH 466
Score = 82.8 bits (203), Expect = 3e-15
Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 7/162 (4%)
Query: 933 HSHFQSTKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFD 992
H F S K+ L + LK+++E G ++++FSQ S LDILE + + D
Sbjct: 484 HLIFNSGKMIILDKLLKRLKEK--GSRVLIFSQMSRLLDILE----DYCYFRDFEYCRID 537
Query: 993 GRLDMKERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQA 1052
G +ER +++++ GG+G+NL A + D W+P + QA
Sbjct: 538 GSTSHEERIEAIDEYNKPNSEKFVFLLTTRA-GGLGINLVTADTVILFDSDWNPQADLQA 596
Query: 1053 IDRIHRIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGDIV 1094
+DR HRIGQ++ V V RF+ +N++EEK++ +K L +V
Sbjct: 597 MDRAHRIGQKKQVHVYRFVTENAIEEKVIERAAQKLRLDQLV 638
>YAL019w [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 1131
Score = 84.7 bits (208), Expect = 7e-16
Identities = 83/301 (27%), Positives = 142/301 (46%), Gaps = 64/301 (21%)
Query: 481 ILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHDT 540
ILAD+MGLGKT ++ A+ K+I + P H
Sbjct: 594 ILADDMGLGKTCQVISFF-------AYLKQI----------------NEPGPH------- 623
Query: 541 YAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGN--NIKDLRAYVLGPNAPS--V 596
L+VVP S L W EF+K LK E YYG+ ++LR +L NA V
Sbjct: 624 ------LVVVPSSTLENWLREFQKFAPALK--IEPYYGSLQEREELRD-ILERNAGKYDV 674
Query: 597 IITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWILTG 656
I+TTY + + S L N F ++ DEGH ++N ++ ++ +R++ + +LTG
Sbjct: 675 IVTTYNLAAGN--KYDVSFLKNRNFNVVVYDEGHMLKNSTSERFAKLMKIRANFRLLLTG 732
Query: 657 TPIINRLDDLFSLVQFL--NL---EPWSHINYWKRYVSVPFEKGNY-----AQAFDVINA 706
TP+ N L +L SL++F+ NL + S +K+ + N+ +A
Sbjct: 733 TPLQNNLKELMSLLEFIMPNLFISKKESFDAIFKQRAKTTDDNKNHNPLLAQEAITRAKT 792
Query: 707 VLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLE---DAENSVKE 763
+++P +LRR K+ + L LPPK ++ +L++ +K++Y ++ + + +K+
Sbjct: 793 MMKPFILRRRKD------QVLKHLPPKHTHIQYCELNAIQKKIYDKEIQIVLEHKRMIKD 846
Query: 764 G 764
G
Sbjct: 847 G 847
Score = 80.1 bits (196), Expect = 2e-14
Identities = 52/165 (31%), Positives = 85/165 (51%), Gaps = 13/165 (7%)
Query: 937 QSTKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKF---DG 993
QS KI AL + LK I E++++FS F+ LDILE+ L + + YKF DG
Sbjct: 947 QSGKIDALKKLLKTII-VDKQEKVLIFSLFTQVLDILEMVLST-------LDYKFLRLDG 998
Query: 994 RLDMKERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAI 1053
+ +R ++++F+ GG G+NL CA+ + D ++P + QA
Sbjct: 999 STQVNDRQLLIDKFYEDKDIPIFILSTKA--GGFGINLVCANNVIIFDQSFNPHDDRQAA 1056
Query: 1054 DRIHRIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGDIVEGDE 1098
DR HR+GQ + V + I +S+EEK+ ++ + K L + D+
Sbjct: 1057 DRAHRVGQTKEVNITTLITKDSIEEKIHQLAKNKLALDSYISEDK 1101
>At5g18620 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1063
Score = 84.7 bits (208), Expect = 7e-16
Identities = 85/323 (26%), Positives = 146/323 (44%), Gaps = 60/323 (18%)
Query: 472 VIKTIING--GILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSS 529
+I+ NG GILADEMGLGKT+ ++L+ A+ + P M
Sbjct: 192 LIRLYENGINGILADEMGLGKTLQTISLL-------AYLHEYRGINGPHM---------- 234
Query: 530 PLRHSQHKHDTYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGN--NIKDLRAY 587
+V P S L W +E + L R + GN + +R
Sbjct: 235 ------------------VVAPKSTLGNWMNEIRRFCPVL--RAVKFLGNPEERRHIREE 274
Query: 588 VLGPNAPSVIITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALR 647
+L + +T++ + E + L + II+DE H I+N ++ SK +
Sbjct: 275 LLVAGKFDICVTSFEMAIKE-----KTTLRRFSWRYIIIDEAHRIKNENSLLSKTMRLFS 329
Query: 648 SSRKWILTGTPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQAFDVINAV 707
++ + ++TGTP+ N L +L++L+ FL E +S + + + E + + ++ V
Sbjct: 330 TNYRLLITGTPLQNNLHELWALLNFLLPEVFSSAETFDEWFQISGE-NDQQEVVQQLHKV 388
Query: 708 LEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGLAK 767
L P LLRR K+ DV+ LPPK+ + K+ +S +K+ Y+++L+ V G +
Sbjct: 389 LRPFLLRRLKS--DVE----KGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNGGGER 442
Query: 768 GDLLKNYTNILVHILRLRQVCCH 790
LL NI ++LR+ C H
Sbjct: 443 KRLL----NI---AMQLRKCCNH 458
Score = 69.7 bits (169), Expect = 2e-11
Identities = 45/154 (29%), Positives = 75/154 (48%), Gaps = 5/154 (3%)
Query: 959 QIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDMKERTRILEQFHXXXXXXXXXX 1018
++++FSQ + LDILE +L + DG ER +E ++
Sbjct: 500 RVLIFSQMTRLLDILE----DYLMYRGYQYCRIDGNTGGDERDASIEAYNKPGSEKFVFL 555
Query: 1019 XXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSVEE 1078
GG+G+NL A + D W+P ++ QA DR HRIGQ++ V+V RF +N++E
Sbjct: 556 LSTRA-GGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTENAIEA 614
Query: 1079 KMLRIQERKRMLGDIVEGDEAERRQKRIEEIQML 1112
K++ +K L +V QK + + ++L
Sbjct: 615 KVIERAYKKLALDALVIQQGRLAEQKTVNKDELL 648
>ECU10g1320 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 823
Score = 84.3 bits (207), Expect = 9e-16
Identities = 83/312 (26%), Positives = 146/312 (46%), Gaps = 60/312 (19%)
Query: 481 ILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHDT 540
ILADEMGLGKT+ +A + Y + K RH
Sbjct: 75 ILADEMGLGKTLQTIAFLGYIRYVKKERK----------------------RH------- 105
Query: 541 YAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKDLR--AYVLGPNAPSVII 598
LI++P S L W+ EF K + K R ++Y + K++R A + + +
Sbjct: 106 ------LIILPKSTLANWRREFRKFMPNYKVR--VFYSSR-KEMRREAEEIMSSRWDACL 156
Query: 599 TTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWILTGTP 658
TTY E + S L V + I++DE H I+N + SK V + ++TGTP
Sbjct: 157 TTY-----EMCINARSILNTVKWSYIVIDEAHRIKNEHSLLSKIVRIFSCDHRLLITGTP 211
Query: 659 IINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQAFDVINAVLEPVLLRRTKN 718
+ N + +L++L+ F+ E ++ ++ YV + ++G+ +A I +VL+ LRR K
Sbjct: 212 LQNNVHELWALLNFIVPEIFNDAEKFESYV-MNIDEGD-GEAIRRIRSVLQLFFLRREK- 268
Query: 719 MKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGLAKGDLLKNYTNIL 778
DV+ +SLPPK+++ +LS ++ Y+ +L K L+ ++ +L
Sbjct: 269 -IDVE----MSLPPKKIVNLYSKLSPMQREWYRMLL-------KRDLSPLGSTRDPKGML 316
Query: 779 VHILRLRQVCCH 790
++++ + CC+
Sbjct: 317 MNVVMQLRKCCN 328
Score = 78.2 bits (191), Expect = 7e-14
Identities = 46/138 (33%), Positives = 73/138 (52%), Gaps = 5/138 (3%)
Query: 957 GEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDMKERTRILEQFHXXXXXXXX 1016
G ++++FSQ S LDILE + + + DG ++RT ++ F+
Sbjct: 368 GSRVLIFSQMSMMLDILE----DYAMFREYEYCRIDGSTSYRDRTEAIDGFNAEGSEKFL 423
Query: 1017 XXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSV 1076
GG+G+NL+ A + D W+P M+ QA DR HRIGQ++ V V R I +N+V
Sbjct: 424 FLLTTRA-GGLGINLSTADTVILFDSDWNPQMDLQAQDRAHRIGQKKQVVVFRLISENTV 482
Query: 1077 EEKMLRIQERKRMLGDIV 1094
EE+++ +K L DI+
Sbjct: 483 EERIVYRSLQKLKLDDIL 500
>Hs6912622_2 [L] KOG0390 DNA repair protein SNF2 family
Length = 808
Score = 84.3 bits (207), Expect = 9e-16
Identities = 88/327 (26%), Positives = 145/327 (43%), Gaps = 60/327 (18%)
Query: 479 GGILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKH 538
G ILADEMGLGKT+ ++LI T + K P +K+
Sbjct: 219 GAILADEMGLGKTLQCISLIWTLQCQGPYGGK------PVIKK----------------- 255
Query: 539 DTYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKDLRAYVLGPNAPSVII 598
TLIV P SL+N W+ EF+K +R +I+ + + ++ I
Sbjct: 256 -------TLIVTPGSLVNNWKKEFQKWLGS--ERIKIFTVDQDHKVEEFIKS------IF 300
Query: 599 TTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWILTGTP 658
+ II E S + N+ F +I DEGH ++N + +T+ A+I+L ++ ILTGTP
Sbjct: 301 YSVLIISYEMLLRSLDQIKNIKFDLLICDEGHRLKNSAIKTTTALISLSCEKRIILTGTP 360
Query: 659 IINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPF-----------EKGNYAQAFDVINAV 707
I N L + F+L+ F+N ++ +++ P EK + + +
Sbjct: 361 IQNDLQEFFALIDFVNPGILGSLSSYRKIYEEPIILSREPSASEEEKELGERRAAELTCL 420
Query: 708 LEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGLAK 767
+LRRT+ + + LPPK V + + + +Y+ +L NS
Sbjct: 421 TGLFILRRTQEIIN------KYLPPKIENVVFCRPGALQIELYRKLL----NSQVVRFCL 470
Query: 768 GDLLKNYTNILVHILRLRQVCCHLDLL 794
LL+N + L+ I L+++C H LL
Sbjct: 471 QGLLENSPH-LICIGALKKLCNHPCLL 496
Score = 73.9 bits (180), Expect = 1e-12
Identities = 50/179 (27%), Positives = 91/179 (49%), Gaps = 7/179 (3%)
Query: 937 QSTKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLD 996
+S K++ L + L I E P E++++ S ++ L+IL+ + H + DG+
Sbjct: 538 ESGKLQVLSKLLAVIHELRPTEKVVLVSNYTQTLNILQEVCKRH----GYAYTRLDGQTP 593
Query: 997 MKERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRI 1056
+ +R +I++ F+ GGVGLNL S + D W+P + QA+ R+
Sbjct: 594 ISQRQQIVDGFNSQHSSFFIFLLSSKA-GGVGLNLIGGSHLILYDIDWNPATDIQAMSRV 652
Query: 1057 HRIGQQQTVKVVRFIIDNSVEEKMLRIQERKR-MLGDIVE-GDEAERRQKRIEEIQMLF 1113
R GQ+ V + R + ++EEK+ + Q K+ + G +V+ +E Q +EE++ LF
Sbjct: 653 WRDGQKYPVHIYRLLTTGTIEEKIYQRQISKQGLCGAVVDLTKTSEHIQFSVEELKNLF 711
>SPCC1235.05c [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 1284
Score = 84.0 bits (206), Expect = 1e-15
Identities = 54/166 (32%), Positives = 87/166 (51%), Gaps = 8/166 (4%)
Query: 938 STKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDM 997
S KI+ L L +++E G +I++FSQF+ LDILE L + ++ + DG +
Sbjct: 923 SGKIRVLKELLPKMKEE--GSRILLFSQFTQMLDILEQVLDTL----KISYVRLDGSTQV 976
Query: 998 KERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIH 1057
+ R I++QFH GG G+NL CA+ + D ++P + QA DR H
Sbjct: 977 EVRQDIIDQFHKEEDVTVFLLSTKA--GGFGINLACANVVILYDCSYNPFDDLQAEDRAH 1034
Query: 1058 RIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGDIVEGDEAERRQ 1103
R+GQ + V V+R I DN++EE + ++ K L + D +R +
Sbjct: 1035 RVGQVREVTVIRLITDNTIEEYIQKLANTKLALDMSLSSDGKDREE 1080
Score = 75.1 bits (183), Expect = 6e-13
Identities = 77/284 (27%), Positives = 120/284 (42%), Gaps = 61/284 (21%)
Query: 480 GILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHD 539
GILADEMGLGKT +A ++ H H H
Sbjct: 571 GILADEMGLGKTCQVVAFFALL-LEQGH-------------------------HGPH--- 601
Query: 540 TYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGN-----NIKDLRAYVLGPNAP 594
L+VVP S L W E + L R E YYG+ NI++ A
Sbjct: 602 -------LVVVPSSTLENWLRELARFCPSL--RVEPYYGSQQERANIRE--AIEENEIKY 650
Query: 595 SVIITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWIL 654
+++TTY + + + S L + F + DEGH ++NR + K ++ L ++ + +L
Sbjct: 651 DILVTTYQLATNN--KEDRSFLKHQNFDVCVYDEGHYLKNRMSERYKHLMNLNANFRLLL 708
Query: 655 TGTPIINRLDDLFSLVQFL-------NLEPWSHINYWKRYVSVPFEKGNYA-QAFDVINA 706
TGTP+ N L +L SL+ F+ +++ I K E+ + Q
Sbjct: 709 TGTPLQNNLKELVSLLAFILPNMFDSDMDDLDVIFKAKPTADADIEQALLSKQRISRAKT 768
Query: 707 VLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVY 750
++ P +LRR KN + L LP K I+E +LS ++ +Y
Sbjct: 769 MMTPFVLRRRKN------QVLNDLPKKTQIIEHCKLSENQLEIY 806
>CE18196 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 2957
Score = 83.6 bits (205), Expect = 2e-15
Identities = 77/325 (23%), Positives = 144/325 (43%), Gaps = 74/325 (22%)
Query: 481 ILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHDT 540
ILADEMGLGKT+ + + +D
Sbjct: 1209 ILADEMGLGKTVQTITFLSRI------------------------------------YDY 1232
Query: 541 YAYRTTLIVVPMSLLNQWQSEFEKAN-------------KDLKKRCEIYYGNNIKDLRAY 587
+ L+VVP+S + W EFE +++ ++ E++Y + +
Sbjct: 1233 GIHGPFLVVVPLSTIQNWVREFETWTDMNAIVYHGSAYAREVLQQYEVFYDKRHCGAKNW 1292
Query: 588 VLGPNAPSVIITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTS-KAVIAL 646
+ITT+ + S+ L + + ++DE H ++NR+ + ++A
Sbjct: 1293 KKNFVKIDALITTFETVVSD-----VEFLKKIPWRVCVIDEAHRLKNRNCKLLVNGLLAF 1347
Query: 647 RSSRKWILTGTPIINRLDDLFSLVQFLNLEPWSH-INYWKRYVSVPFEKGNYAQAFDVIN 705
R + +LTGTP+ N +D+LFSL+ FL+ + + + + +++ S + +
Sbjct: 1348 RMEHRVLLTGTPLQNNIDELFSLLNFLHPQQFDNSATFLEQFGSCQTD-----DQVQKLQ 1402
Query: 706 AVLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGL 765
+L+P++LRR K +DV+ SL PKE + ++QLS +K+ Y+++LE + L
Sbjct: 1403 EILKPMMLRRLK--EDVE----KSLGPKEETIIEVQLSDMQKKFYRAILERNFSH----L 1452
Query: 766 AKGDLLKNYTNILVHILRLRQVCCH 790
KG + N++ + LR+ C H
Sbjct: 1453 CKGTSAPSLMNVM---MELRKCCNH 1474
Score = 61.2 bits (147), Expect = 9e-09
Identities = 41/125 (32%), Positives = 62/125 (48%), Gaps = 7/125 (5%)
Query: 957 GEQIIVFSQFSSFLDILEIELRS-HLPRDQVIIYKFDGRLDMKERTRILEQFHXXXXXXX 1015
G ++++FSQ LD+LE L S P +++ DG + R +++F
Sbjct: 1527 GHKVLIFSQMVKVLDLLEEFLISMSYPFERI-----DGNVRGDLRQAAIDRF-SKENSDR 1580
Query: 1016 XXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNS 1075
GG+G+NLT A + D W+P + QA R HRIGQ++ VKV R I N+
Sbjct: 1581 FVFLLCTRAGGLGINLTAADTVIIFDSDWNPQNDLQAQARCHRIGQKKLVKVYRLITSNT 1640
Query: 1076 VEEKM 1080
E +M
Sbjct: 1641 YEREM 1645
>7303422 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1027
Score = 83.6 bits (205), Expect = 2e-15
Identities = 56/182 (30%), Positives = 95/182 (51%), Gaps = 9/182 (4%)
Query: 933 HSHFQSTKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFD 992
H + S K+ L + L ++QE G ++++FSQ + LDILE + + D
Sbjct: 425 HLVYNSGKMAILDKLLPKLQEQ--GSRVLIFSQMTRMLDILE----DYCHWRNYNYCRLD 478
Query: 993 GRLDMKERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQA 1052
G+ ++R R +++F+ GG+G+NL A + D W+P M+ QA
Sbjct: 479 GQTPHEDRNRQIQEFNMDNSAKFLFMLSTRA-GGLGINLATADVVIIYDSDWNPQMDLQA 537
Query: 1053 IDRIHRIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGDIV--EGDEAERRQKRIEEIQ 1110
+DR HRIGQ++ V+V R I +++VEEK++ E K L +V G + R ++ + +
Sbjct: 538 MDRAHRIGQKKQVRVFRLITESTVEEKIVERAEVKLRLDKMVIQGGRLVDNRSNQLNKDE 597
Query: 1111 ML 1112
ML
Sbjct: 598 ML 599
Score = 77.0 bits (188), Expect = 2e-13
Identities = 71/275 (25%), Positives = 129/275 (46%), Gaps = 47/275 (17%)
Query: 480 GILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHD 539
GILADEMGLGKT+ ++L+ L+H +++
Sbjct: 149 GILADEMGLGKTLQTISLL------------------------------GYLKHFKNQAG 178
Query: 540 TYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKDLRAYVLGPNAPSVIIT 599
+ +++VP S L W +EF+K L+ C I + VL P V +T
Sbjct: 179 PH-----IVIVPKSTLQNWVNEFKKWCPSLRAVCLIGDQDTRNTFIRDVLMPGEWDVCVT 233
Query: 600 TYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWILTGTPI 659
+Y + E S FN + +++DE H I+N ++ S+ + +++ + ++TGTP+
Sbjct: 234 SYEMCIRE---KSVFKKFNWRY--LVIDEAHRIKNEKSKLSEILREFKTANRLLITGTPL 288
Query: 660 INRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQAFDVINAVLEPVLLRRTKNM 719
N L +L++L+ FL + ++ + + + G+ A ++AVL+P LLRR K
Sbjct: 289 QNNLHELWALLNFLLPDVFNSSEDFDEWFNTNTCLGDDA-LITRLHAVLKPFLLRRLK-- 345
Query: 720 KDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSML 754
+V+ + L PK+ + + LS ++ Y +L
Sbjct: 346 AEVEKR----LKPKKEMKIFVGLSKMQRDWYTKVL 376
>At3g54280 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 2049
Score = 83.2 bits (204), Expect = 2e-15
Identities = 87/328 (26%), Positives = 145/328 (43%), Gaps = 53/328 (16%)
Query: 480 GILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHD 539
GIL D+MGLGKT+ A A++ + D++ R S + D
Sbjct: 1465 GILCDDMGLGKTLQASAIVAS--------------------------DAAERRGSTDELD 1498
Query: 540 TYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKDLRAYVLGPNAPSVIIT 599
+ ++IV P +L+ W E EK DL + Y + +D + N +VIIT
Sbjct: 1499 VFP---SIIVCPSTLVGHWAFEIEKYI-DLSLLSVLQYVGSAQDRVSLREQFNNHNVIIT 1554
Query: 600 TYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWILTGTPI 659
+Y ++ R L + ILDEGH I+N ++ + AV L++ + IL+GTPI
Sbjct: 1555 SYDVV-----RKDVDYLTQFSWNYCILDEGHIIKNAKSKITAAVKQLKAQHRLILSGTPI 1609
Query: 660 INRLDDLFSLVQ-----FLNLEPWSHINYWKRYVSVPFEKGNYAQ------AFDVINAVL 708
N + +L+SL FL E +Y K ++ K + A + ++ +
Sbjct: 1610 QNNIMELWSLFDFLMPGFLGTERQFQASYGKPLLAARDPKCSAKDAEAGVLAMEALHKQV 1669
Query: 709 EPVLLRRTKN--MKDVDGKPL----VSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVK 762
P LLRRTK + D+ K + L P ++ + + SS K+ S+++ + S
Sbjct: 1670 MPFLLRRTKEEVLSDLPEKIIQDRYCDLSPVQLKLYEQFSGSSAKQEISSIIK-VDGSAD 1728
Query: 763 EGLAKGDLLKNYTNILVHILRLRQVCCH 790
G A K T++ + L ++C H
Sbjct: 1729 SGNADVAPTKASTHVFQALQYLLKLCSH 1756
Score = 68.6 bits (166), Expect = 5e-11
Identities = 47/169 (27%), Positives = 87/169 (50%), Gaps = 19/169 (11%)
Query: 959 QIIVFSQFSSFLDILEIEL-RSHLPRDQVIIYKFDGRLDMKERTRILEQFHXXXXXXXXX 1017
++++F+Q + LDI+E +L ++H+ V + DG + ++R I++ F+
Sbjct: 1825 RVLIFAQHKALLDIIEKDLFQAHMK--SVTYMRLDGSVVPEKRFEIVKAFNSDPTIDVLL 1882
Query: 1018 XXXXXXTGGVGLNLTCASRAFMMDPWWSPGMED------------QAIDRIHRIGQQQTV 1065
GG+GLNLT A M+ W+P M D QA+DR HR+GQ++ V
Sbjct: 1883 LTTH--VGGLGLNLTSADTLVFMEHDWNP-MRDHQFANIELNKLWQAMDRAHRLGQKRVV 1939
Query: 1066 KVVRFIIDNSVEEKMLRIQERK-RMLGDIVEGDEAERRQKRIEEIQMLF 1113
V R I+ ++EEK++ +Q+ K + ++ + A + +++ LF
Sbjct: 1940 NVHRLIMRGTLEEKVMSLQKFKVSVANTVINAENASMKTMNTDQLLDLF 1988
>At2g28290 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1339
Score = 83.2 bits (204), Expect = 2e-15
Identities = 84/329 (25%), Positives = 144/329 (43%), Gaps = 71/329 (21%)
Query: 480 GILADEMGLGKTIS--------ALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPL 531
GILADEMGLGKT+ ++LIC M ++ D P
Sbjct: 814 GILADEMGLGKTVQMGLGKTVQVISLICYL--------------------METKNDRGPF 853
Query: 532 RHSQHKHDTYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKDLRAYVLGP 591
L+VVP S+L WQSE + K + + L +
Sbjct: 854 ---------------LVVVPSSVLPGWQSEINFWAPSIHKIVYCGTPDERRKLFKEQIVH 898
Query: 592 NAPSVIITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRK 651
+V++TTY + +++ R S + + II+DEGH I+N S + + + SS +
Sbjct: 899 QKFNVLLTTYEYLMNKHDRPKLS---KIHWHYIIIDEGHRIKNASCKLNADLKHYVSSHR 955
Query: 652 WILTGTPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQA----------F 701
+LTGTP+ N L++L++L+ FL ++ + ++ + PF+ + A
Sbjct: 956 LLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFQSNGESSALLSEEENLLII 1015
Query: 702 DVINAVLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSV 761
+ ++ VL P +LRR K+ + + LP K + + + S+ +K + +ED S+
Sbjct: 1016 NRLHQVLRPFVLRRLKHKVENE------LPEKIERLIRCEASAYQK-LLMKRVEDNLGSI 1068
Query: 762 KEGLAKGDLLKNYTNILVHILRLRQVCCH 790
G AK + N ++ LR +C H
Sbjct: 1069 --GNAKSRAVHN------SVMELRNICNH 1089
Score = 63.5 bits (153), Expect = 2e-09
Identities = 44/148 (29%), Positives = 73/148 (48%), Gaps = 7/148 (4%)
Query: 940 KIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDMKE 999
K++ L R L +++ T +++ FS + LD++E +L + DG+ +
Sbjct: 1111 KLEMLDRMLPKLKATD--HRVLFFSTMTRLLDVME----DYLTLKGYKYLRLDGQTSGGD 1164
Query: 1000 RTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRI 1059
R +++ F+ GGVG+NL A + D W+P ++ QA R HRI
Sbjct: 1165 RGALIDGFNKSGSPFFIFLLSIRA-GGVGVNLQAADTVILFDTDWNPQVDLQAQARAHRI 1223
Query: 1060 GQQQTVKVVRFIIDNSVEEKMLRIQERK 1087
GQ++ V V+RF NSVEE++ E K
Sbjct: 1224 GQKKDVLVLRFETVNSVEEQVRASAEHK 1251
>Hs21362042 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 2713
Score = 82.8 bits (203), Expect = 3e-15
Identities = 79/324 (24%), Positives = 147/324 (44%), Gaps = 73/324 (22%)
Query: 481 ILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHDT 540
ILADEMGLGKTI ++ + H P
Sbjct: 481 ILADEMGLGKTIQSITFLSEIFLRGIH---------------------GPF--------- 510
Query: 541 YAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNI------------KDLRAYV 588
LI+ P+S + W+ EF + +Y+G+ I +D +
Sbjct: 511 ------LIIAPLSTITNWEREFRTWTE---MNAIVYHGSQISRQMIQQYEMVYRDAQGNP 561
Query: 589 L-GPNAPSVIITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALR 647
L G V+ITT+ +I ++ L + + +I+DE H ++NR+ + + + +
Sbjct: 562 LSGVFKFHVVITTFEMILADCPE-----LKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMA 616
Query: 648 SSRKWILTGTPIINRLDDLFSLVQFLNLEPW-SHINYWKRYVSVPFEKGNYAQAFDVINA 706
K +LTGTP+ N +++LFSL+ FL + S + + + + E + + +
Sbjct: 617 LEHKVLLTGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFGDLKTE-----EQVKKLQS 671
Query: 707 VLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGLA 766
+L+P++LRR K+ DV+ +L PK+ + +++L++ +K+ Y+++LE + L
Sbjct: 672 ILKPMMLRRLKD--DVE----KNLAPKQETIIEVELTNIQKKYYRAILEKNFSF----LT 721
Query: 767 KGDLLKNYTNILVHILRLRQVCCH 790
KG N N++ ++ LR+ C H
Sbjct: 722 KGANQHNMPNLINTMMELRKCCNH 745
Score = 65.9 bits (159), Expect = 3e-10
Identities = 47/142 (33%), Positives = 69/142 (48%), Gaps = 10/142 (7%)
Query: 957 GEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDMKERTRILEQFHXXXXXXXX 1016
G ++++FSQ LDILE +L + + + DGR+ R +++F
Sbjct: 797 GHKVLIFSQMVRCLDILE----DYLIQRRYTYERIDGRVRGNLRQAAIDRF-CKPDSDRF 851
Query: 1017 XXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSV 1076
GG+G+NLT A + D W+P + QA R HRIGQ + VKV R I NS
Sbjct: 852 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSY 911
Query: 1077 EEKM-----LRIQERKRMLGDI 1093
E +M L++ K +L DI
Sbjct: 912 EREMFDKASLKLGLDKAVLQDI 933
>Hs21071046 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1033
Score = 82.8 bits (203), Expect = 3e-15
Identities = 71/249 (28%), Positives = 129/249 (51%), Gaps = 27/249 (10%)
Query: 547 LIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKDLRAYVLG----PNAPSVIITTYG 602
+++VP S L+ W +EF++ L+ C + G+ KD RA + P V +T+Y
Sbjct: 215 MVLVPKSTLHNWMNEFKRWVPSLRVIC--FVGD--KDARAAFIRDEMMPGEWDVCVTSYE 270
Query: 603 IIQSEYGRTSTSGLFNVVFFR-IILDEGHTIRNRSTRTSKAVIALRSSRKWILTGTPIIN 661
++ E +F +R +++DE H I+N ++ S+ V +S+ + +LTGTP+ N
Sbjct: 271 MVIKE------KSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQN 324
Query: 662 RLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQAFDVINAVLEPVLLRRTKNMKD 721
L +L++L+ FL + ++ + + + G+ + + ++AVL+P LLRR K D
Sbjct: 325 NLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGD-QKLVERLHAVLKPFLLRRIKT--D 381
Query: 722 VDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGLAKGDLLKNYTNILVHI 781
V+ SLPPK+ I L LS ++ Y +L + V K D ++ +L +
Sbjct: 382 VE----KSLPPKKEIKIYLGLSKMQREWYTKILM-KDIDVLNSSGKMDKMR----LLNIL 432
Query: 782 LRLRQVCCH 790
++LR+ C H
Sbjct: 433 MQLRKCCNH 441
Score = 72.8 bits (177), Expect = 3e-12
Identities = 56/194 (28%), Positives = 94/194 (47%), Gaps = 21/194 (10%)
Query: 933 HSHFQSTKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFD 992
H S K+ L + L +++E G ++++FSQ + LDILE + + D
Sbjct: 459 HIVSNSGKMVVLDKLLAKLKEQ--GSRVLIFSQMTRLLDILE----DYCMWRGYEYCRLD 512
Query: 993 GRLDMKERT------------RILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMM 1040
G+ +ER +E F+ GG+G+NL A +
Sbjct: 513 GQTPHEEREDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRA-GGLGINLASADVVILY 571
Query: 1041 DPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGDIV--EGDE 1098
D W+P ++ QA+DR HRIGQ++ V+V R I DN+VEE+++ E K L IV +G
Sbjct: 572 DSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRL 631
Query: 1099 AERRQKRIEEIQML 1112
+++ ++ + +ML
Sbjct: 632 IDQQSNKLAKEEML 645
>At1g03750 [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26
(contains SNF2 family DNA-dependent ATPase domain)
Length = 874
Score = 82.4 bits (202), Expect = 4e-15
Identities = 71/292 (24%), Positives = 132/292 (44%), Gaps = 55/292 (18%)
Query: 478 NGGILADEMGLGKTISALALICTA---SYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHS 534
+GGIL D+MGLGKTI +A + D +ES K P
Sbjct: 170 HGGILGDDMGLGKTIQTIAFLAAVYGKDGDAGESCLLESDKGP----------------- 212
Query: 535 QHKHDTYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKDLRAYVLGPNAP 594
LI+ P S+++ W+SEF + K +Y+G+N +D+ L
Sbjct: 213 -----------VLIICPSSIIHNWESEFSRWASFFK--VSVYHGSN-RDMILEKLKARGV 258
Query: 595 SVIITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWIL 654
V++T++ R L + + +I DE H ++N ++ +A + +++ ++ L
Sbjct: 259 EVLVTSFDTF-----RIQGPVLSGINWEIVIADEAHRLKNEKSKLYEACLEIKTKKRIGL 313
Query: 655 TGTPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQAFD-----------V 703
TGT + N++ +LF+L +++ +++ + P + G A A +
Sbjct: 314 TGTVMQNKISELFNLFEWVAPGSLGTREHFRDFYDEPLKLGQRATAPERFVQIADKRKQH 373
Query: 704 INAVLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLE 755
+ ++L +LRRTK ++ G ++ KE V Q+S ++RVYQ M++
Sbjct: 374 LGSLLRKYMLRRTK--EETIGHLMMG---KEDNVVFCQMSQLQRRVYQRMIQ 420
Score = 67.0 bits (162), Expect = 2e-10
Identities = 47/148 (31%), Positives = 69/148 (45%), Gaps = 6/148 (4%)
Query: 955 SPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDMKERTRILEQFHXXXXXX 1014
S G++I++FS LDILE L R + DG R +++ F+
Sbjct: 554 SKGDKILLFSYSVRMLDILE----KFLIRKGYSFARLDGSTPTNLRQSLVDDFNASPSKQ 609
Query: 1015 XXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDN 1074
GG+GLNL A+R + DP W+P + QA DR R GQ++ V V R +
Sbjct: 610 VFLISTKA--GGLGLNLVSANRVVIFDPNWNPSHDLQAQDRSFRYGQKRHVVVFRLLSAG 667
Query: 1075 SVEEKMLRIQERKRMLGDIVEGDEAERR 1102
S+EE + Q K+ L +I + E R
Sbjct: 668 SLEELVYTRQVYKQQLSNIAVAGKMETR 695
>SPAC25A8.01c [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 922
Score = 82.0 bits (201), Expect = 5e-15
Identities = 47/160 (29%), Positives = 87/160 (54%), Gaps = 8/160 (5%)
Query: 938 STKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDM 997
+TK++ L + L E G+++++FSQF+ LDIL++ ++S + +FDG +
Sbjct: 760 ATKVRKLKKLLTNAVEN--GDRVVLFSQFTQVLDILQLVMKSL----NLKFLRFDGSTQV 813
Query: 998 KERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIH 1057
R +++QF+ GG G+NL CA+ + D ++P + QA DR H
Sbjct: 814 DFRQDLIDQFYADESINVFLLSTKA--GGFGINLACANMVILYDVSFNPFDDLQAEDRAH 871
Query: 1058 RIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGDIVEGD 1097
R+GQ++ V V +F++ +++EE + R+ K L + G+
Sbjct: 872 RVGQKKEVTVYKFVVKDTIEEHIQRLANAKIALDATLSGN 911
Score = 80.1 bits (196), Expect = 2e-14
Identities = 85/332 (25%), Positives = 146/332 (43%), Gaps = 69/332 (20%)
Query: 480 GILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHD 539
GILADEMGLGKT +A + +K I
Sbjct: 408 GILADEMGLGKTCQTIAF-----FSLLMDKNINGPH------------------------ 438
Query: 540 TYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIK--DLRAYV-LGPNAPSV 596
L++ P S + W EF K LK E+YYG+ ++ ++R + ++ +V
Sbjct: 439 -------LVIAPASTMENWLREFAKFCPKLK--IELYYGSQVEREEIRERINSNKDSYNV 489
Query: 597 IITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWILTG 656
++TTY + + + L N F + DEGH ++NR++ + ++++ + + +LTG
Sbjct: 490 MLTTYRLAATS--KADRLFLRNQKFNVCVYDEGHYLKNRASERYRHLMSIPADFRVLLTG 547
Query: 657 TPIINRLDDLFSLVQFL-------NLEPWSHINYWKRYVSVPFEKGNYA-QAFDVINAVL 708
TP+ N L +L SL+ F+ L+ I K+ FE+ + Q ++
Sbjct: 548 TPLQNNLKELISLLAFILPHVFDYGLKSLDVIFTMKKSPESDFERALLSEQRVSRAKMMM 607
Query: 709 EPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVY---------QSMLEDAEN 759
P +LRR K+ + L +LP K I+E + S E+R Y S+L+ EN
Sbjct: 608 APFVLRRKKS------QVLDALPKKTRIIEFCEFSEEERRRYDDFASKQSVNSLLD--EN 659
Query: 760 SVKEGL-AKGDLLKNYTNILVHILRLRQVCCH 790
+K L +L K + +++LR++ H
Sbjct: 660 VMKTNLDTNANLAKKKSTAGFVLVQLRKLADH 691
>CE00789 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 971
Score = 81.6 bits (200), Expect = 6e-15
Identities = 80/302 (26%), Positives = 137/302 (44%), Gaps = 49/302 (16%)
Query: 480 GILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHD 539
GILADEMGLGKT+ +++I ++H ++K
Sbjct: 115 GILADEMGLGKTLQTISMI------------------------------GYMKHYKNKAS 144
Query: 540 TYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKDLRAYVLGPNAPSVIIT 599
+ L++VP S L W +EF+K + I + V+ P V T
Sbjct: 145 PH-----LVIVPKSTLQNWANEFKKWCPSINAVVLIGDEAARNQVLRDVILPQKFDVCCT 199
Query: 600 TYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWILTGTPI 659
TY ++ + L + + II+DE H I+N ++ S+ V L S + ++TGTP+
Sbjct: 200 TYEMMLKV-----KTQLKKLNWRYIIIDEAHRIKNEKSKLSETVRELNSENRLLITGTPL 254
Query: 660 INRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQAFDVINAVLEPVLLRRTKNM 719
N L +L++L+ FL + ++ + + + S GN ++ VL+P LLRR K+
Sbjct: 255 QNNLHELWALLNFLLPDIFTSSDDFDSWFSNDAMSGN-TDLVQRLHKVLQPFLLRRIKS- 312
Query: 720 KDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGLAKGDLLKNYTNILV 779
DV+ SL PK+ + + LS ++ Y +L + + G K + + NIL+
Sbjct: 313 -DVE----KSLLPKKEVKVYVGLSKMQREWYTKVLM-KDIDIINGAGKVEKAR-LMNILM 365
Query: 780 HI 781
H+
Sbjct: 366 HL 367
Score = 75.1 bits (183), Expect = 6e-13
Identities = 49/157 (31%), Positives = 81/157 (51%), Gaps = 7/157 (4%)
Query: 938 STKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDM 997
S K+ L + L + +E G ++++FSQFS LD+LE + DG
Sbjct: 396 SGKMVVLDKLLMKFKEQ--GSRVLIFSQFSRMLDLLE----DFCWWRHYEYCRLDGSTPH 449
Query: 998 KERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIH 1057
++R+ +E ++ GG+G+NL A + D W+P + QA+DR H
Sbjct: 450 EDRSNAIEAYNAPDSKKFIFMLTTRA-GGLGINLATADVVIIYDSDWNPQSDLQAMDRAH 508
Query: 1058 RIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGDIV 1094
RIGQ++ V+V R I +N+V+E+++ E K L +IV
Sbjct: 509 RIGQKKQVRVFRLITENTVDERIIEKAEAKLRLDNIV 545
>At2g18760 [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26 (contains
SNF2 family DNA-dependent ATPase domain)
Length = 1187
Score = 81.6 bits (200), Expect = 6e-15
Identities = 55/193 (28%), Positives = 99/193 (50%), Gaps = 8/193 (4%)
Query: 921 IDAERGYELISFHSHFQSTKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSH 980
++ E ++ + + +S K+K + LK ++ G ++++FSQ LDILE S
Sbjct: 709 LEREHSHQNPDYGNPERSGKMKVVAEVLKVWKQQ--GHRVLLFSQTQQMLDILE----SF 762
Query: 981 LPRDQVIIYKFDGRLDMKERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMM 1040
L ++ + DG +K+R ++++F+ GG+G NLT A+R +
Sbjct: 763 LVANEYSYRRMDGLTPVKQRMALIDEFNNSEDMFVFVLTTK--VGGLGTNLTGANRVIIF 820
Query: 1041 DPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGDIVEGDEAE 1100
DP W+P + QA +R RIGQ++ V V R I ++EEK+ Q K L + + + +
Sbjct: 821 DPDWNPSNDMQARERAWRIGQKKDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQ 880
Query: 1101 RRQKRIEEIQMLF 1113
RR + +++ LF
Sbjct: 881 RRFFKARDMKDLF 893
Score = 77.0 bits (188), Expect = 2e-13
Identities = 84/336 (25%), Positives = 145/336 (43%), Gaps = 47/336 (13%)
Query: 479 GGILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDS-SPLRHSQHK 537
GGI+ DEMGLGKTI L+ + + + + ++ I +++ + P H +
Sbjct: 405 GGIIGDEMGLGKTIQVLSFLGSLHFSKMYKPSIIICPVTLLRQWRREAQKWYPDFHVEIL 464
Query: 538 HDTYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKDLRAY------VLGP 591
HD+ S + Q + +++ D + + + K+ + + VL
Sbjct: 465 HDS---------AQDSGHGKGQGKASESDYDSESSVDSDHEPKSKNTKKWDSLLNRVLNS 515
Query: 592 NAPSVIITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRK 651
+ ++ITTY E R L N+ + +LDEGH IRN ++ + L++ +
Sbjct: 516 ES-GLLITTY-----EQLRLQGEKLLNIEWGYAVLDEGHRIRNPNSDITLVCKQLQTVHR 569
Query: 652 WILTGTPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQAFD--------- 702
I+TG PI N+L +L+SL F+ + ++ SVP G YA A
Sbjct: 570 IIMTGAPIQNKLTELWSLFDFVFPGKLGVLPVFEAEFSVPITVGGYANASPLQVSTAYRC 629
Query: 703 --VINAVLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENS 760
V+ ++ P LLRR K DV+ L K V L+ ++ Y++ L +E
Sbjct: 630 AVVLRDLIMPYLLRRMK--ADVN----AHLTKKTEHVLFCSLTVEQRSTYRAFLASSEVE 683
Query: 761 VKEGLAKGDLLKNYTNILVHILRLRQVCCHLDLLKK 796
+ N L I +R++C H DLL++
Sbjct: 684 --------QIFDGNRNSLYGIDVMRKICNHPDLLER 711
>At2g44980 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 861
Score = 81.3 bits (199), Expect = 8e-15
Identities = 60/197 (30%), Positives = 93/197 (46%), Gaps = 24/197 (12%)
Query: 919 EPIDAERGYELISFHSHFQSTKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILE--IE 976
EP E G L+ S K+ L + LK++ ++ G ++++FSQ +S LDIL+ +E
Sbjct: 353 EPEPFEEGEHLVQ-----ASGKLLVLDQLLKRLHDS--GHRVLLFSQMTSTLDILQDFME 405
Query: 977 LRSHLPRDQVIIYKFDGRLDMKERTRILEQFHXXXX---------XXXXXXXXXXXTGGV 1027
LR + + DG + +ER ++ F GGV
Sbjct: 406 LRRYSYE------RLDGSVRAEERFAAIKNFSAKTERGLDSEVDGSNAFVFMISTRAGGV 459
Query: 1028 GLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSVEEKMLRIQERK 1087
GLNL A + W+P ++ QA+ R HRIGQ V + + ++SVEE +LR ERK
Sbjct: 460 GLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQISHVLSINLVTEHSVEEVILRRAERK 519
Query: 1088 RMLGDIVEGDEAERRQK 1104
L V GD E +++
Sbjct: 520 LQLSHNVVGDNMEEKEE 536
Score = 59.7 bits (143), Expect = 2e-08
Identities = 59/258 (22%), Positives = 119/258 (45%), Gaps = 31/258 (12%)
Query: 547 LIVVPMSLLNQWQSEFEKANKDLK-------KRCEIYYGNNIKDLRAYVLGPNAPSVIIT 599
L++ P+S+ + W SE + +L+ K C + ++ D ++ V++T
Sbjct: 105 LVLCPLSVTDGWVSEINRFTPNLEVLRYVGDKYCRLDMRKSMYDHGHFL----PFDVLLT 160
Query: 600 TYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIA-LRSSRKWILTGTP 658
TY I L + + I+DE ++N ++ ++ R+ ++TGTP
Sbjct: 161 TYDI-----ALVDQDFLSQIPWQYAIIDEAQRLKNPNSVLYNVLLEQFLIPRRLLITGTP 215
Query: 659 IINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKG------NYAQAFDVINAVLEPVL 712
I N L +L++L+ F + ++ +++S E G N + + + +L +
Sbjct: 216 IQNNLTELWALMHFCMPLVFGTLD---QFLSAFKETGDGLDVSNDKETYKSLKFILGAFM 272
Query: 713 LRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGLAKGDLLK 772
LRRTK++ G + LPP + + L S +K++Y S+L + E + G
Sbjct: 273 LRRTKSLLIESGN--LVLPPLTELTVMVPLVSLQKKIYTSILRKELPGLLELSSGG---S 327
Query: 773 NYTNILVHILRLRQVCCH 790
N+T++ +++LR+ C H
Sbjct: 328 NHTSLQNIVIQLRKACSH 345
>YLR247c [L] KOG0298 DEAD box-containing helicase-like transcription
factor/DNA repair protein
Length = 1556
Score = 80.9 bits (198), Expect = 1e-14
Identities = 86/335 (25%), Positives = 140/335 (41%), Gaps = 68/335 (20%)
Query: 382 LPETTPDESLFKLQLRRYQKQSLSWMLKREYEYSHLSEKAAEVSIDG------------- 428
LP++ PD K+ L +Q++S+ WML +E + LS+ + G
Sbjct: 280 LPQSIPD---LKVNLLPFQRESVEWMLIKEGHGNSLSDTPTVIDEVGLIDFMNEYYAYGY 336
Query: 429 ----NSMNPLWKKFRWPSNSKQGTPNHEDDCFFYANLYTGE-FSIEKPVIKTIINGGILA 483
S + + W N G +D N Y E S + PV G+LA
Sbjct: 337 ELIARSPDEVGPSLLW--NKLTGYILTTEDAAHLYNQYRKERLSGDYPVCAK----GVLA 390
Query: 484 DEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHDTYAY 543
+EMGLGKTI L+LI + +K++ ++ + + + + +
Sbjct: 391 EEMGLGKTIEILSLILL------NRRKLKDSEATFIDDENRTITKT-------------- 430
Query: 544 RTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKDLRAY---VLGPNAPSVIITT 600
+TTLI+ P ++L QW E E LK Y +KD + V +I+T+
Sbjct: 431 KTTLIICPNAILKQWLEEIELHANSLKWYTYRGYNEIMKDCKTVDEAVQQLCQYDIIVTS 490
Query: 601 YGIIQSEYGRTS-----------------TSGLFNVVFFRIILDEGHTIRNRSTRTSKAV 643
Y II +E +S L + F+RIILDE +R+ ST ++K
Sbjct: 491 YNIIATEVHHAEFNRSIRSRRLKSPKYDYSSPLALMQFYRIILDEVQMLRSSSTYSAKCT 550
Query: 644 IALRSSRKWILTGTPIINRLDDLFSLVQFLNLEPW 678
L W ++GTPI N + + ++ +L L P+
Sbjct: 551 SLLHRIHTWGVSGTPIQN-IYNFRMIMSYLKLHPF 584
Score = 55.5 bits (132), Expect = 5e-07
Identities = 51/185 (27%), Positives = 85/185 (45%), Gaps = 25/185 (13%)
Query: 909 ISEANVLKLKEPIDAERGYELISFHSHFQSTKIKALLRHLKQIQETSPGEQIIVFSQFSS 968
I+E + + +KE A+ + + K+ + LR LK QE + Q+I++SQ +
Sbjct: 1342 INEVHQIHIKESFGAKIDFVI----------KLISYLR-LKSEQENADPPQVILYSQKTE 1390
Query: 969 FLDILEIELRSHLPRDQVIIYKFDGRLDMKERTRILEQFHXXXXXXXXX-XXXXXXTGGV 1027
+L ++ L+ +Y + + + E + T G
Sbjct: 1391 YLKVIGKVLK---------LYHIEHLACLSNTANVGETINNFKRQPSVTCLLLNVKTLGA 1441
Query: 1028 GLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSVEEKMLR----I 1083
GLNL A F++DP + E QA+ R +RIGQ + V F+I N+VEE +LR +
Sbjct: 1442 GLNLINAKHIFLLDPILNNSDELQAMGRNNRIGQDEETFVWNFMIRNTVEENILRYKCIL 1501
Query: 1084 QERKR 1088
+ERKR
Sbjct: 1502 EERKR 1506
>7293795 [R] KOG0383 Predicted helicase
Length = 883
Score = 80.9 bits (198), Expect = 1e-14
Identities = 105/410 (25%), Positives = 168/410 (40%), Gaps = 83/410 (20%)
Query: 410 REYEYSHLSEKAAEVSIDG-NSMNPLWKKFRWPSNSKQG---------TPNHEDDCFFY- 458
RE Y+ S + SI G N L+KK R + +Q +ED F
Sbjct: 202 RELSYNDSSWERESDSIPGLNQAIALYKKLRSSNKGRQRDRPAPTIDLNKKYEDQPVFLK 261
Query: 459 -ANLYTGEFSIEKPVIKTIINGG----ILADEMGLGKTISALALICTASYDEAHEKKIES 513
A L F IE G ILADEMGLGKTI + + + + E H +
Sbjct: 262 EAGLKLHPFQIEGVSWLRYSWGQGIPTILADEMGLGKTIQTVVFLYSL-FKEGHCR---- 316
Query: 514 TKKPSMKEMSSQVDSSPLRHSQHKHDTYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRC 573
P LI VP+S L W+ E E +L C
Sbjct: 317 ---------------GPF---------------LISVPLSTLTNWERELELWAPELY--C 344
Query: 574 EIYYGNNIKDLRAYVLGPNAPSVIITT-----------YGIIQSEYGRTSTSGLFN--VV 620
Y G K RA + +TT + ++ + Y S F +
Sbjct: 345 VTYVGG--KTARAVIRKHEISFEEVTTKTMRENQTQYKFNVMLTSYEFISVDAAFLGCID 402
Query: 621 FFRIILDEGHTIRNRSTRTSKAVIALRSSRKWILTGTPIINRLDDLFSLVQFLNLEPWSH 680
+ +++DE H +R+ ++ + + R K +LTGTP+ N L++LF L+ FL+ ++
Sbjct: 403 WAALVVDEAHRLRSNQSKFFRILSKYRIGYKLLLTGTPLQNNLEELFHLLNFLSSGKFND 462
Query: 681 INYWKRYVSVPFEKGNYAQAFDVINAVLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKL 740
+ ++ F + + ++ +LEP +LRR K DV L S+PPK + ++
Sbjct: 463 LQTFQ----AEFTDVSKEEQVKRLHEILEPHMLRRLK--ADV----LKSMPPKSEFIVRV 512
Query: 741 QLSSSEKRVYQSMLEDAENSVKEGLAKGDLLKNYTNILVHILRLRQVCCH 790
+LSS +K+ Y+ +L +N G + + NI+ + LR+ C H
Sbjct: 513 ELSSMQKKFYKHIL--TKNFKALNQKGGGRVCSLLNIM---MDLRKCCNH 557
Score = 75.9 bits (185), Expect = 3e-13
Identities = 46/158 (29%), Positives = 83/158 (52%), Gaps = 9/158 (5%)
Query: 938 STKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIY-KFDGRLD 996
S K+ L + LKQ++ + ++++FSQ + L++LE H + Y + DG +
Sbjct: 585 SGKLDLLSKMLKQLK--ADNHRVLLFSQMTKMLNVLE-----HFLEGEGYQYDRIDGSIK 637
Query: 997 MKERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRI 1056
R + +++F+ GG+G+NL A + D W+P + QA R
Sbjct: 638 GDLRQKAIDRFNDPVSEHFVFLLSTRA-GGLGINLATADTVIIFDSDWNPHNDVQAFSRA 696
Query: 1057 HRIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGDIV 1094
HR+GQ++ V + RF+ NSVEE+++++ + K ML +V
Sbjct: 697 HRMGQKKKVMIYRFVTHNSVEERIMQVAKHKMMLTHLV 734
>Hs4506397 [L] KOG0390 DNA repair protein SNF2 family
Length = 747
Score = 80.1 bits (196), Expect = 2e-14
Identities = 45/171 (26%), Positives = 90/171 (52%), Gaps = 6/171 (3%)
Query: 944 LLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDMKERTRI 1003
+L ++ + + +++++ S ++ LD+ E R+ + + + DG + +K+R ++
Sbjct: 500 VLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRAR----RYLYVRLDGTMSIKKRAKV 555
Query: 1004 LEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQ 1063
+E+F+ GG GLNL A+R M DP W+P ++QA+ R+ R GQ++
Sbjct: 556 VERFNSPSSPDFVFMLSSKA-GGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKK 614
Query: 1064 TVKVVRFIIDNSVEEKMLRIQERKRMLGDIVEGDEAE-RRQKRIEEIQMLF 1113
T + R + ++EEK+ + Q K+ L V +E + R + E++ LF
Sbjct: 615 TCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVERHFSLGELKELF 665
Score = 72.4 bits (176), Expect = 4e-12
Identities = 85/342 (24%), Positives = 144/342 (41%), Gaps = 80/342 (23%)
Query: 478 NGGILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHK 537
+G I+ADEMGLGKT+ + L+ T E ++D +
Sbjct: 177 HGCIMADEMGLGKTLQCITLMWTLLRQSP--------------ECKPEIDKA-------- 214
Query: 538 HDTYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKDLRAYVLGPNAPSVI 597
++V P SL+ W +E K + G I+ L + G + +
Sbjct: 215 ---------VVVSPSSLVKNWYNEVGK-----------WLGGRIQPLA--IDGGSKDEID 252
Query: 598 ITTYGIIQSEYGRTSTSGLF-NVVFFR-------------IILDEGHTIRNRSTRTSKAV 643
G + R S+ L + FR +I DEGH ++N +T +A+
Sbjct: 253 QKLEGFMNQRGARVSSPILIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQAL 312
Query: 644 IALRSSRKWILTGTPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQAFDV 703
+L +SR+ +++GTPI N L + FSLV F+N + +K++ +P KG A A +
Sbjct: 313 DSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPILKGRDAAASEA 372
Query: 704 -----------INAVLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQS 752
+ +++ L+RRT D+ K LP K V +L+ + +Y+
Sbjct: 373 DRQLGEERLRELTSIVNRCLIRRT---SDILSK---YLPVKIEQVVCCRLTPLQTELYKR 426
Query: 753 MLEDAENSVKEGLAKGDLLKNYTNILVHILRLRQVCCHLDLL 794
L A+ + E L +G K + L I L+++C H L+
Sbjct: 427 FLRQAKPA--EELLEG---KMSVSSLSSITSLKKLCNHPALI 463
>At5g44800 [R] KOG0383 Predicted helicase
Length = 2228
Score = 80.1 bits (196), Expect = 2e-14
Identities = 78/329 (23%), Positives = 148/329 (44%), Gaps = 66/329 (20%)
Query: 481 ILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHDT 540
ILADEMGLGKT+SA A + + ++
Sbjct: 697 ILADEMGLGKTVSASAFLSSLYFEFG---------------------------------- 722
Query: 541 YAYRTTLIVVPMSLLNQWQSEFE---------KANKDLKKRCEIY-YGNNIKDLRAYVLG 590
R L++VP+S + W SEF + + K R I Y + K+
Sbjct: 723 -VARPCLVLVPLSTMPNWLSEFSLWAPLLNVVEYHGSAKGRAIIRDYEWHAKNSTGTTKK 781
Query: 591 PNAP--SVIITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRS 648
P + +V++TTY ++ ++ +S L V + +++DEGH ++N ++ +
Sbjct: 782 PTSYKFNVLLTTYEMVLAD-----SSHLRGVPWEVLVVDEGHRLKNSESKLFSLLNTFSF 836
Query: 649 SRKWILTGTPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQAFDVINAVL 708
+ +LTGTP+ N + ++++L+ FL + ++ ++ F A+ + + ++
Sbjct: 837 QHRVLLTGTPLQNNIGEMYNLLNFLQPSSFPSLSSFEE----RFHDLTSAEKVEELKKLV 892
Query: 709 EPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGLAKG 768
P +LRR K KD + ++PPK + ++L+S + Y++ML + + KG
Sbjct: 893 APHMLRRLK--KDA----MQNIPPKTERMVPVELTSIQAEYYRAML-TKNYQILRNIGKG 945
Query: 769 DLLKNYTNILVHILRLRQVCCHLDLLKKT 797
++ NI +++LR+VC H L+ T
Sbjct: 946 VAQQSMLNI---VMQLRKVCNHPYLIPGT 971
Score = 68.2 bits (165), Expect = 7e-11
Identities = 48/172 (27%), Positives = 85/172 (48%), Gaps = 8/172 (4%)
Query: 938 STKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDM 997
S K+ L LK + + G ++++FSQ + LDILE L ++ + DG + +
Sbjct: 989 SAKLTLLHSMLKVLHKE--GHRVLIFSQMTKLLDILEDYL--NIEFGPKTFERVDGSVAV 1044
Query: 998 KERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIH 1057
+R + +F+ G+G+NL A + D ++P + QA++R H
Sbjct: 1045 ADRQAAIARFNQDKNRFVFLLSTRAC--GLGINLATADTVIIYDSDFNPHADIQAMNRAH 1102
Query: 1058 RIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGDIVEGDEAERRQKRIEEI 1109
RIGQ + + V R ++ SVEE++L++ ++K ML + QK E+I
Sbjct: 1103 RIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKSGS--QKEFEDI 1152
>At2g46020 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2
and related ATPases (DNA/RNA helicase superfamily)
Length = 1245
Score = 80.1 bits (196), Expect = 2e-14
Identities = 87/335 (25%), Positives = 142/335 (41%), Gaps = 74/335 (22%)
Query: 480 GILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHD 539
GILADEMGLGKT+ +ALI + +
Sbjct: 55 GILADEMGLGKTVQVMALIAYLMEFKGN-------------------------------- 82
Query: 540 TYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKDLRAYVLGP---NAPSV 596
Y LI+VP ++L W+SE + C Y G KD R+ + +V
Sbjct: 83 ---YGPHLIIVPNAVLVNWKSELHTWLPSVS--CIYYVGT--KDQRSKLFSQVKFEKFNV 135
Query: 597 IITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWILTG 656
++TTY I Y R+ S V + II+DE +++R + ++ + R R+ +LTG
Sbjct: 136 LVTTYEFIM--YDRSKLS---KVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTG 190
Query: 657 TPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQAFD-------------- 702
TP+ N L +L+SL+ L + + + + + + PF+K A +
Sbjct: 191 TPLQNDLKELWSLLNLLLPDVFDNRKAFHDWFAQPFQKEGPAHNIEDDWLETEKKVIVIH 250
Query: 703 VINAVLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVK 762
++ +LEP +LRR ++DV+G SLP K +V + ++S+ + VY + V
Sbjct: 251 RLHQILEPFMLRR--RVEDVEG----SLPAKVSVVLRCRMSAIQSAVYDWIKATGTLRVD 304
Query: 763 EGLAKGDLLKN-------YTNILVHILRLRQVCCH 790
K KN Y + + LR+ C H
Sbjct: 305 PDDEKLRAQKNPIYQAKIYRTLNNRCMELRKACNH 339
Score = 57.8 bits (138), Expect = 9e-08
Identities = 50/177 (28%), Positives = 83/177 (46%), Gaps = 12/177 (6%)
Query: 940 KIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDMKE 999
K+ L R L ++Q T G ++++FS + LDILE +L +++ + DG +++
Sbjct: 361 KLWILDRILIKLQRT--GHRVLLFSTMTKLLDILE----EYLQWRRLVYRRIDGTTSLED 414
Query: 1000 RTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRI 1059
R + F+ G GLNL A + DP +P E+QA+ R HRI
Sbjct: 415 RESAIVDFNDPDTDCFIFLLSIRAAGR-GLNLQTADTVVIYDPDPNPKNEEQAVARAHRI 473
Query: 1060 GQQQTVKVVRFIIDNSVEEKMLRIQ--ERKRMLGDIVEGDEAERRQKRIEEIQMLFQ 1114
GQ + VKV+ +V EK+ Q + R G + D+ + + I I+ L +
Sbjct: 474 GQTREVKVIYM---EAVVEKLSSHQKEDELRSGGSVDLEDDMAGKDRYIGSIEGLIR 527
>7300091 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 1861
Score = 80.1 bits (196), Expect = 2e-14
Identities = 53/163 (32%), Positives = 84/163 (51%), Gaps = 6/163 (3%)
Query: 953 ETSPGEQIIVFSQFSSFLDILEIEL-RSHLPRDQVIIYKFDGRLDMKERTRILEQFHXXX 1011
E+ + ++F Q + LDI+E +L R HLP V + DG + +R I+ F+
Sbjct: 1647 ESVSQHRALIFCQLKAMLDIVEQDLLRRHLP--SVTYLRLDGSVPASQRQDIVNNFNSDP 1704
Query: 1012 XXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFI 1071
GG+GLNLT A ++ W+P + QA+DR HRIGQ++ V V R I
Sbjct: 1705 SIDVLLLTTM--VGGLGLNLTGADTVIFVEHDWNPMKDLQAMDRAHRIGQKKVVNVYRLI 1762
Query: 1072 IDNSVEEKMLRIQERKRMLGD-IVEGDEAERRQKRIEEIQMLF 1113
NS+EEK++ +Q+ K + + +V + A + +I LF
Sbjct: 1763 TRNSLEEKIMGLQKFKILTANTVVSAENASLQTMGTSQIFDLF 1805
Score = 77.4 bits (189), Expect = 1e-13
Identities = 87/336 (25%), Positives = 145/336 (42%), Gaps = 65/336 (19%)
Query: 480 GILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHD 539
GIL D+MGLGKT+ IC + D H + PS
Sbjct: 1309 GILCDDMGLGKTLQT---ICILAGDHMHRQTANLANLPS--------------------- 1344
Query: 540 TYAYRTTLIVVPMSLLNQWQSEFEK-ANKDLKKRCEIYYGNNI--KDLRAYVLGPNAPSV 596
L++ P +L W E EK ++ R YYG + + LR+ + ++
Sbjct: 1345 -------LVICPPTLTGHWVYEVEKFLDQGSVLRPLHYYGFPVGREKLRSDI--GTKCNL 1395
Query: 597 IITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWILTG 656
++ +Y ++ + S + F +LDEGH I+N T++SKA+ L+++ + IL+G
Sbjct: 1396 VVASYDTVRKDIDFFS-----GIHFNYCVLDEGHIIKNGKTKSSKAIKRLKANHRLILSG 1450
Query: 657 TPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQ-----------AFDVIN 705
TPI N + +L+SL FL + + S P A+ A + ++
Sbjct: 1451 TPIQNNVLELWSLFDFLMPGFLGTEKQFVQRFSRPILSSRDAKSSAKEQEAGVLAMEALH 1510
Query: 706 AVLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSM----LEDAENSV 761
+ P LLRR K +DV L LPPK +LS + R+Y+ L+D + +
Sbjct: 1511 RQVLPFLLRRVK--EDV----LKDLPPKITQDLLCELSPLQLRLYEDFSNKHLKDCLDKL 1564
Query: 762 KEGLAKGDLLKNY---TNILVHILRLRQVCCHLDLL 794
+ + + +N T+I + L+ VC H L+
Sbjct: 1565 GDSSSASMVTENLSAKTHIFQALRYLQNVCNHPKLV 1600
>YJR035w [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26 (contains
SNF2 family DNA-dependent ATPase domain)
Length = 1085
Score = 79.3 bits (194), Expect = 3e-14
Identities = 49/158 (31%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 957 GEQIIVFSQFSSFLDILEIELRSHLPRDQVIIY-KFDGRLDMKERTRILEQFHXXXXXXX 1015
G + ++F+Q LDILE + + P + Y + DG ++K R ++++F+
Sbjct: 667 GYKALLFTQSRQMLDILEEFISTKDPDLSHLNYLRMDGTTNIKGRQSLVDRFNNESFDVF 726
Query: 1016 XXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNS 1075
GG+G+NLT A+R + DP W+P + QA +R RIGQ++ V + R ++ S
Sbjct: 727 LLTTR---VGGLGVNLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVSIYRLMVGGS 783
Query: 1076 VEEKMLRIQERKRMLGDIVEGDEAERRQKRIEEIQMLF 1113
+EEK+ Q K+ L + + D ++R +I E+ LF
Sbjct: 784 IEEKIYHRQIFKQFLTNRILTDPKQKRFFKIHELHDLF 821
Score = 79.0 bits (193), Expect = 4e-14
Identities = 89/346 (25%), Positives = 146/346 (41%), Gaps = 55/346 (15%)
Query: 479 GGILADEMGLGKTISALA----------------LICTASYDEAHEKKIESTKKPSMKEM 522
GGI+ DEMGLGKTI +A ++C A+ + + + P +
Sbjct: 317 GGIIGDEMGLGKTIQVIAFIAALHHSGLLTGPVLIVCPATVMKQWCNEFQHWWPPLRTVI 376
Query: 523 SSQVDSSPLRHSQHKHDTYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIK 582
+ S + K D ++ S + + E K + KK E Y ++
Sbjct: 377 LHSMGSGMASDQKFKMDENDLENLIM---NSKPSDFSYEDWKNSTRTKKALESSY--HLD 431
Query: 583 DLRAYVLGPNAPSVIITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKA 642
L V+ ++ITTY + R + L V + +LDEGH IRN + S
Sbjct: 432 KLIDKVVTDG--HILITTYVGL-----RIHSDKLLKVKWQYAVLDEGHKIRNPDSEISLT 484
Query: 643 VIALRSSRKWILTGTPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQAFD 702
L++ + IL+GTPI N L +L+SL F+ + +++ +P G YA A +
Sbjct: 485 CKKLKTHNRIILSGTPIQNNLTELWSLFDFIFPGKLGTLPVFQQQFVIPINIGGYANATN 544
Query: 703 V-----------INAVLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQ 751
+ + ++ P LLRR K DV LP K+ +V +L+ ++ Y
Sbjct: 545 IQVQTGYKCAVALRDLISPYLLRRVK--ADV----AKDLPQKKEMVLFCKLTKYQRSKYL 598
Query: 752 SMLEDAE-NSVKEGLAKGDLLKNYTNILVHILRLRQVCCHLDLLKK 796
L ++ N ++ G N+L I LR++C H DLL +
Sbjct: 599 EFLHSSDLNQIQNG---------KRNVLFGIDILRKICNHPDLLDR 635
>SPAC15A10.03c [L] KOG0390 DNA repair protein SNF2 family
Length = 852
Score = 79.3 bits (194), Expect = 3e-14
Identities = 54/179 (30%), Positives = 95/179 (52%), Gaps = 9/179 (5%)
Query: 938 STKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDM 997
S K+ L R L QI++ + ++I++ S ++S LD+ E R+ + + DG +++
Sbjct: 609 SGKMLVLERMLYQIKQETD-DKIVLISNYTSTLDLFEQLCRARGYK----ALRLDGTMNV 663
Query: 998 KERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIH 1057
+R R+++ F+ GG G+NL A+R + DP W+P + QA+ R+
Sbjct: 664 NKRQRLVDTFNDPEKDAFVFLLSSKA-GGCGINLIGANRLILFDPDWNPAADQQALARVW 722
Query: 1058 RIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGDIVEGDEAE--RRQKRIEEIQMLFQ 1114
R GQ++ V RFI ++EEK+ + Q K+ L V DEA+ R ++ ++ LFQ
Sbjct: 723 RDGQKKDCFVYRFIATGTIEEKIFQRQSHKQSLSSCVV-DEAQDVERHFSLDNLRQLFQ 780
Score = 69.3 bits (168), Expect = 3e-11
Identities = 88/341 (25%), Positives = 135/341 (38%), Gaps = 71/341 (20%)
Query: 478 NGGILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHK 537
NG I+ADEMGLGKT+ +AL+ T K+ KP++++
Sbjct: 288 NGCIMADEMGLGKTLQCIALLWTLL------KQSPQAGKPTIEK---------------- 325
Query: 538 HDTYAYRTTLIVVPMSLLNQWQSEFEK-ANKDLKKRCEIYYGNNIKDLRAYVLGPNAP-- 594
+I P SL+ W +E K KD I G + K L A
Sbjct: 326 --------AIITCPSSLVKNWANELVKWLGKDAITPF-ILDGKSSKQELIMALQQWASVH 376
Query: 595 ------SVIITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRS 648
V+I +Y + R+ L N ++ DEGH ++N + T A+ L
Sbjct: 377 GRQVTRPVLIASYETL-----RSYVEHLNNAEIGMLLCDEGHRLKNSDSLTFTALDKLNV 431
Query: 649 SRKWILTGTPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQAFD------ 702
R+ IL+GTPI N L + FSL+ F N +++ +P KG A +
Sbjct: 432 QRRVILSGTPIQNDLSEYFSLLNFANPGLLGSRQEFRKNYEIPILKGRDADGTEKDKENG 491
Query: 703 -----VINAVLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDA 757
+ ++ ++RRT D+ K LP K V LS + +Y+ +
Sbjct: 492 DAKLAELAKIVNRFIIRRT---NDILSK---YLPVKYEHVVFCNLSEFQLSLYKHFITSP 545
Query: 758 E-NSVKEGLAKGDLLKNYTNILVHILRLRQVCCHLDLLKKT 797
E N + G + L I L+++C H DLL T
Sbjct: 546 EINKILRGTG--------SQPLKAIGLLKKICNHPDLLNLT 578
>7295868 [L] KOG0390 DNA repair protein SNF2 family
Length = 784
Score = 79.3 bits (194), Expect = 3e-14
Identities = 43/157 (27%), Positives = 86/157 (54%), Gaps = 6/157 (3%)
Query: 958 EQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDMKERTRILEQFHXXXXXXXXX 1017
+++++ S ++ LD+ E R + + DG + +K+R++++++F+
Sbjct: 517 DKVVLISNYTQTLDLFEQLARKR----KYGFVRLDGTMSIKKRSKVVDRFNDPESDSFLF 572
Query: 1018 XXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSVE 1077
GG GLNL A+R FM DP W+P ++QA+ R+ R GQ++ + R + S+E
Sbjct: 573 MLSSKA-GGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIE 631
Query: 1078 EKMLRIQERKRMLGD-IVEGDEAERRQKRIEEIQMLF 1113
EK+L+ Q K+ L I++ +E+ + ++++ LF
Sbjct: 632 EKILQRQTHKKSLSSTIIDNNESAEKHFTRDDLKDLF 668
Score = 77.4 bits (189), Expect = 1e-13
Identities = 81/328 (24%), Positives = 134/328 (40%), Gaps = 51/328 (15%)
Query: 478 NGGILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHK 537
NG I+ADEMGLGKT+ + L+ T LR
Sbjct: 179 NGCIMADEMGLGKTLQCVTLVWTL-----------------------------LRQGPEC 209
Query: 538 HDTYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKDLRAYVLGPNAPSVI 597
T ++V P SL+ W+ EF K + G +RA + +
Sbjct: 210 KPTI--NKAIVVSPSSLVKNWEKEFTKWLHGRLLCLPMEGGTKENTIRALEQFSMTSARL 267
Query: 598 ITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWILTGT 657
T +I E R L +I DEGH ++N T +A++ L++ R+ +L+GT
Sbjct: 268 GTPVLLISYETFRIYAEILCKYEVGMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGT 327
Query: 658 PIINRLDDLFSLVQFLNLEPWSHINYWKRYV-----------SVPFEKGNYAQAFDVINA 706
PI N L + +SLV F+N E +KR S E+ + +
Sbjct: 328 PIQNDLTEYYSLVNFVNPEMLGTAAVFKRNFESAILRGQNTDSTEQERQRAIEKTQELIG 387
Query: 707 VLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGLA 766
+++ ++RRT + LP K +V +L++ + +Y + L+ + V+ LA
Sbjct: 388 LVDQCIIRRTNQIL------TKYLPVKFEMVICAKLTAIQLELYTNFLK--SDQVRRSLA 439
Query: 767 KGDLLKNYTNILVHILRLRQVCCHLDLL 794
+ + T L I L+++C H DL+
Sbjct: 440 DCNEKASLT-ALADITTLKKICSHPDLI 466
>7297570 [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 844
Score = 79.0 bits (193), Expect = 4e-14
Identities = 82/299 (27%), Positives = 137/299 (45%), Gaps = 62/299 (20%)
Query: 480 GILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHD 539
GILADEMGLGKTI +A + + + + L + H
Sbjct: 310 GILADEMGLGKTIQVIAFL-------------------------AYLKENGLSQAAH--- 341
Query: 540 TYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKDLRAYVLGPNAPS---- 595
LIVVP S L+ W++E + +L E Y+G+ +D R + G A
Sbjct: 342 -------LIVVPSSTLDNWEAEISRWCPELV--VEKYHGS--QDERRRMRGRFAKDGFTG 390
Query: 596 --VIITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWI 653
V++TTY I+ S + + + +I DE H ++N +T+ +I + + + +
Sbjct: 391 FDVLLTTYHIVGSTPEERKMFRVCKLDY--VIFDEAHMLKNMTTQRYANLITINARMRIL 448
Query: 654 LTGTPIINRLDDLFSLVQFL-------NLEPWSHINYWKRYVSVPFEKGNYAQAFDVINA 706
LTGTP+ N L +L SL+ F+ ++E + K ++ + Q + A
Sbjct: 449 LTGTPLQNNLLELISLLCFVMPKFFAKSIEDIKSLFAKKGKSDGDQDEVSQFQETQIQRA 508
Query: 707 --VLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKE 763
+++P +LRR K KDV L +LP K +VEK+ +SS +K Y +++ N+ E
Sbjct: 509 KRIMKPFVLRRLK--KDV----LKNLPKKLSLVEKVPMSSQQKIYYHELVDYYSNNKGE 561
Score = 70.9 bits (172), Expect = 1e-11
Identities = 46/150 (30%), Positives = 77/150 (50%), Gaps = 7/150 (4%)
Query: 957 GEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDMKERTRILEQFHXXXXXXXX 1016
G ++++FSQF+ LDI+E LR + + DG + R ++ F+
Sbjct: 668 GHRVLLFSQFTMMLDIVEEYLRIR----KFGFCRLDGATAVNVRQDLITDFNGDDSIFVF 723
Query: 1017 XXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSV 1076
GGVG+NLT A + D ++P + QA DR HR+GQQ+ V + R I ++++
Sbjct: 724 LLSTKA--GGVGINLTAADTCVIHDIDFNPYNDKQAEDRCHRMGQQRPVTIYRLISESTI 781
Query: 1077 EEKMLRIQERK-RMLGDIVEGDEAERRQKR 1105
EE +L E K ++ DI ++ E ++R
Sbjct: 782 EEGILMAAEEKLKLEKDITSNEKGEVHEQR 811
>Hs4557451 [R] KOG0383 Predicted helicase
Length = 1944
Score = 77.8 bits (190), Expect = 9e-14
Identities = 59/205 (28%), Positives = 95/205 (45%), Gaps = 15/205 (7%)
Query: 890 IEFQQNKKLSINCPYCRMPISEANVLKLKEPIDAERGYELISFHSHFQSTKIKALLRHLK 949
+ + K N PY P++ KL P A G LI S K+ L + L+
Sbjct: 1019 LNIMMDLKKCCNHPYL-FPVAAMESPKL--PSGAYEGGALIK-----SSGKLMLLQKMLR 1070
Query: 950 QIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDMKERTRILEQFHX 1009
+++E G ++++FSQ + LD+LE L + + DG + R +++F+
Sbjct: 1071 KLKEQ--GHRVLIFSQMTKMLDLLE----DFLDYEGYKYERIDGGITGALRQEAIDRFNA 1124
Query: 1010 XXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVR 1069
GG+G+NL A + D W+P + QA R HRIGQ V + R
Sbjct: 1125 PGAQQFCFLLSTRA-GGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYR 1183
Query: 1070 FIIDNSVEEKMLRIQERKRMLGDIV 1094
F+ SVEE++ ++ +RK ML +V
Sbjct: 1184 FVTRASVEERITQVAKRKMMLTHLV 1208
Score = 71.2 bits (173), Expect = 8e-12
Identities = 79/333 (23%), Positives = 150/333 (44%), Gaps = 82/333 (24%)
Query: 481 ILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHDT 540
ILADEMGLGKTI + + + Y E H TK P
Sbjct: 758 ILADEMGLGKTIQTIVFLYSL-YKEGH------TKGPF---------------------- 788
Query: 541 YAYRTTLIVVPMSLLNQWQSEFE--------------KANKDLKKRCEIYYGNN-IKD-L 584
L+ P+S + W+ EF+ K ++ + + E + +N IK
Sbjct: 789 ------LVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGK 842
Query: 585 RAYVLGPNAP---SVIITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSK 641
+A+ + A V++T+Y +I + + L ++ + +++DE H ++N ++ +
Sbjct: 843 KAFKMKREAQVKFHVLLTSYELITIDQ-----AALGSIRWACLVVDEAHRLKNNQSKFFR 897
Query: 642 AVIALRSSRKWILTGTPIINRLDDLFSLVQFLNLEPWSHI-NYWKRYVSVPFEKGNYAQA 700
+ + K +LTGTP+ N L++LF L+ FL E ++++ + + + + E
Sbjct: 898 VLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKE-----DQ 952
Query: 701 FDVINAVLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLE---DA 757
++ +L P +LRR K DV ++P K ++ +++LS +K+ Y+ +L +A
Sbjct: 953 IKKLHDLLGPHMLRRLK--ADV----FKNMPAKTELIVRVELSPMQKKYYKYILTRNFEA 1006
Query: 758 ENSVKEGLAKGDLLKNYTNILVHILRLRQVCCH 790
NS G N ++L ++ L++ C H
Sbjct: 1007 LNSRGGG--------NQVSLLNIMMDLKKCCNH 1031
>Hs17454125 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 1849
Score = 77.4 bits (189), Expect = 1e-13
Identities = 48/141 (34%), Positives = 76/141 (53%), Gaps = 5/141 (3%)
Query: 959 QIIVFSQFSSFLDILEIEL-RSHLPRDQVIIYKFDGRLDMKERTRILEQFHXXXXXXXXX 1017
+I++F Q S LDI+E +L + HLP V + DG + +R I+ +F+
Sbjct: 1646 RILIFCQLKSMLDIVEHDLLKPHLP--SVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLL 1703
Query: 1018 XXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSVE 1077
GG+GLNLT A ++ W+P + QA+DR HRIGQ++ V V R I ++E
Sbjct: 1704 LTTH--VGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLE 1761
Query: 1078 EKMLRIQERKRMLGDIVEGDE 1098
EK++ +Q+ K + + V E
Sbjct: 1762 EKIMGLQKFKMNIANTVISQE 1782
Score = 75.5 bits (184), Expect = 4e-13
Identities = 92/341 (26%), Positives = 140/341 (40%), Gaps = 76/341 (22%)
Query: 480 GILADEMGLGKTISALALI----CTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQ 535
GIL D+MGLGKT+ ++ ++ C + + A K E PS
Sbjct: 1287 GILCDDMGLGKTLQSICILAGDHCHRAQEYARSKLAECMPLPS----------------- 1329
Query: 536 HKHDTYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKDLRAYVLGPNAPS 595
L+V P +L W E + K C Y N + + GP
Sbjct: 1330 -----------LVVCPPTLTGHWVDE-------VGKFCSREYLNPL-----HYTGPPTER 1366
Query: 596 VI----ITTYGIIQSEYG--RTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSS 649
+ + + +I + Y R N+ F ILDEGH I+N T+ SKAV L ++
Sbjct: 1367 IRLQHQVKRHNLIVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLTAN 1426
Query: 650 RKWILTGTPIINRLDDLFSLVQ-----FLNLEPWSHINYWKRYV------SVPFEKGNYA 698
+ IL+GTPI N + +L+SL FL E Y K + S E+
Sbjct: 1427 YRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGV 1486
Query: 699 QAFDVINAVLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLED-A 757
A D ++ + P LLRR K +DV L LPPK + LS + ++Y+ + A
Sbjct: 1487 LAMDALHRQVLPFLLRRMK--EDV----LQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRA 1540
Query: 758 ENSVKEGLAKGDL--------LKNYTNILVHILRLRQVCCH 790
+ V E ++ L LK ++ + LR++C H
Sbjct: 1541 KCDVDETVSSATLSEETEKPKLKATGHVFQALQYLRKLCNH 1581
>CE26384 [L] KOG0298 DEAD box-containing helicase-like transcription
factor/DNA repair protein
Length = 1610
Score = 77.4 bits (189), Expect = 1e-13
Identities = 72/296 (24%), Positives = 129/296 (43%), Gaps = 55/296 (18%)
Query: 496 ALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHDTYAYRTTLIVVPMSLL 555
A IC +D+ +K + +K S E + A TTLI++P SL+
Sbjct: 463 AKICGWDFDKFKNEKFQCSKCTSESE-----------------NRRAVGTTLIILPESLI 505
Query: 556 NQWQSEFEKANKDLKKRCEIYYGNNIKDLRAYVLGPNAPSVIITTYGIIQSEYGRTS--- 612
QW +E K D K ++Y K ++ VI+TTY +++E +
Sbjct: 506 FQWFTEISKHCSDNIK--VMFYFGIRKHGYLQPCEMDSYDVILTTYDTLRNEMSFSEEKG 563
Query: 613 --------------TSGLFNVVFFRIILDEGHTIRNR-STRTSKAVIALRSSRKWILTGT 657
TS L +V F+RII+DE + + S++ ++ ++ L + W +TGT
Sbjct: 564 PPRNLRNESKTLNLTSSLMHVEFWRIIVDESQVLPHGVSSQLTRMLMKLHAENWWCVTGT 623
Query: 658 PIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPF------------EKGNYAQAFDVIN 705
P++ + ++ L FLNL P+ ++ +YV + +K N + F +
Sbjct: 624 PLVKSIAGIYPLFNFLNLFPFGSPQFFSQYVHPQYLNFALSLRDEALDKNNLPRVF--LL 681
Query: 706 AVLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSV 761
+L ++ R+TK K V + LP + + + ++ E+R Y+ E N V
Sbjct: 682 EILSKMMSRKTKQDKSVQ----LKLPKLTEVEKIIYFTTVEERQYKDEKERLRNIV 733
>YGL163c [L] KOG0390 DNA repair protein SNF2 family
Length = 898
Score = 77.0 bits (188), Expect = 2e-13
Identities = 50/178 (28%), Positives = 89/178 (49%), Gaps = 7/178 (3%)
Query: 938 STKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDM 997
S K L R L +I+ T ++I++ S ++ LD++E R + DG + +
Sbjct: 654 SAKFSILERFLHKIK-TESDDKIVLISNYTQTLDLIEKMCRYK----HYSAVRLDGTMSI 708
Query: 998 KERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIH 1057
+R +++++F+ GG G+NL A+R +MDP W+P + QA+ R+
Sbjct: 709 NKRQKLVDRFNDPEGQEFIFLLSSKA-GGCGINLIGANRLILMDPDWNPAADQQALARVW 767
Query: 1058 RIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGD-IVEGDEAERRQKRIEEIQMLFQ 1114
R GQ++ + RFI ++EEK+ + Q K L +V+ E R + ++ LFQ
Sbjct: 768 RDGQKKDCFIYRFISTGTIEEKIFQRQSMKMSLSSCVVDAKEDVERLFSSDNLRQLFQ 825
Score = 64.3 bits (155), Expect = 1e-09
Identities = 82/336 (24%), Positives = 134/336 (39%), Gaps = 64/336 (19%)
Query: 479 GGILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKH 538
G I+ADEMGLGKT+ +AL+ T K++ +D
Sbjct: 330 GCIMADEMGLGKTLQCIALMWTLLRQGPQGKRL--------------IDKC--------- 366
Query: 539 DTYAYRTTLIVVPMSLLNQWQSEFEK--ANKDLK------KRCEIYYGNNIKDLRAYVLG 590
+IV P SL+N W +E K L K+ + GN +
Sbjct: 367 --------IIVCPSSLVNNWANELIKWLGPNTLTPLAVDGKKSSMGGGNTTVSQAIHAWA 418
Query: 591 PNAPSVIITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSR 650
I+ II E R + L N ++ DEGH ++N + T A+ ++ R
Sbjct: 419 QAQGRNIVKPVLIISYETLRRNVDQLKNCNVGLMLADEGHRLKNGDSLTFTALDSISCPR 478
Query: 651 KWILTGTPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQAFD-------- 702
+ IL+GTPI N L + F+L+ F N +++ P +G A A D
Sbjct: 479 RVILSGTPIQNDLSEYFALLSFSNPGLLGSRAEFRKNFENPILRGRDADATDKEITKGEA 538
Query: 703 ---VINAVLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAE- 758
++ ++ ++RRT D+ K LP K V + L + +Y +++ E
Sbjct: 539 QLQKLSTIVSKFIIRRT---NDILAK---YLPCKYEHVIFVNLKPLQNELYNKLIKSREV 592
Query: 759 NSVKEGLAKGDLLKNYTNILVHILRLRQVCCHLDLL 794
V +G+ L+ I L+++C H +LL
Sbjct: 593 KKVVKGVGGSQPLR-------AIGILKKLCNHPNLL 621
>7295870 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1883
Score = 76.6 bits (187), Expect = 2e-13
Identities = 79/327 (24%), Positives = 151/327 (46%), Gaps = 69/327 (21%)
Query: 478 NGGILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHK 537
N ILADEMGLGKTI + + S + H
Sbjct: 547 NSVILADEMGLGKTIQTICFL--YSLFKIH------------------------------ 574
Query: 538 HDTYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKD---LRAYVLGPNAP 594
+ Y L VVP+S + WQ EF+ D+ + Y +IK ++ Y +
Sbjct: 575 ---HLYGPFLCVVPLSTMTAWQREFDLWAPDMN---VVTYLGDIKSRELIQQYEWQFESS 628
Query: 595 -----SVIITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSS 649
+ I+TTY I+ + L + + +++DE H ++N + K++ ++
Sbjct: 629 KRLKFNCILTTYEIVLKD-----KQFLGTLQWAALLVDEAHRLKNDDSLLYKSLKEFDTN 683
Query: 650 RKWILTGTPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYA-QAFDVINAVL 708
+ ++TGTP+ N L +L++L+ F+ + + + W+ + + GN + + ++ L
Sbjct: 684 HRLLITGTPLQNSLKELWALLHFIMPDKF---DTWENF---EVQHGNAEDKGYTRLHQQL 737
Query: 709 EPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGLAKG 768
EP +LRR K KDV+ SLP K + +++++S +K+ Y+ +L +++++G K
Sbjct: 738 EPYILRRVK--KDVE----KSLPAKVEQILRVEMTSLQKQYYKWILTKNFDALRKG--KR 789
Query: 769 DLLKNYTNILVHILRLRQVCCHLDLLK 795
+ NI ++ L++ C H L++
Sbjct: 790 GSTSTFLNI---VIELKKCCNHAALIR 813
Score = 68.9 bits (167), Expect = 4e-11
Identities = 47/158 (29%), Positives = 79/158 (49%), Gaps = 9/158 (5%)
Query: 938 STKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRS-HLPRDQVIIYKFDGRLD 996
S K+ L + L +++ET G ++++FSQ LD+L L+ H P + DG +
Sbjct: 835 SGKLVLLDKLLCRLKET--GHRVLIFSQMVRMLDVLADYLQKRHFP-----FQRLDGSIK 887
Query: 997 MKERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRI 1056
+ R + L+ F+ GG+G+NL A + D W+P + QA R
Sbjct: 888 GEMRRQALDHFNAEGSQDFCFLLSTRA-GGLGINLATADTVIIFDSDWNPQNDLQAQARA 946
Query: 1057 HRIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGDIV 1094
HRIGQ+ V + R + SVEE+++ ++K +L +V
Sbjct: 947 HRIGQKNQVNIYRLVTARSVEEQIVERAKQKMVLDHLV 984
>SPBP35G2.10 [R] KOG0383 Predicted helicase
Length = 1418
Score = 76.3 bits (186), Expect = 3e-13
Identities = 68/275 (24%), Positives = 120/275 (42%), Gaps = 49/275 (17%)
Query: 481 ILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHDT 540
ILADEMGLGKT+ ++ I Y +H
Sbjct: 578 ILADEMGLGKTVQVISFISVLFY---------------------------------RHKC 604
Query: 541 YAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKDLRAY-VLGPNAPSVIIT 599
+ L++VP + + W+ E +K L+ + N +R Y ++ P + T
Sbjct: 605 FP---VLVIVPHATVANWERELKKWAPFLQINVLVGSEKNRSLVRDYRLINQKDPKHVST 661
Query: 600 TYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWILTGTPI 659
+I + S L + +I+DEG ++N + + +++S K +LTGTP+
Sbjct: 662 HVLVISASNVEREISLLRKFQWKVLIVDEGQRLKNDQSSLFYYLSSVKSDFKLLLTGTPL 721
Query: 660 INRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQAFDVINAVLEPVLLRRTKNM 719
N + +LF+L+QFLN + KRY + EK ++ +L+P LRR K+
Sbjct: 722 QNNVRELFNLLQFLNPMKINAAELEKRYSIIDTEK------VTELHQILKPFFLRRVKS- 774
Query: 720 KDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSML 754
+ L + P K ++ L ++ +K +Y+S+L
Sbjct: 775 -----EVLDNFPTKVEVIIPLSMTPVQKGLYKSIL 804
Score = 72.4 bits (176), Expect = 4e-12
Identities = 54/175 (30%), Positives = 84/175 (47%), Gaps = 7/175 (4%)
Query: 937 QSTKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLD 996
+ K L+ L + + G +I++FSQF LDILE + +FDG
Sbjct: 867 EEASCKFLILRLLVPKLITRGHRILLFSQFIQQLDILE----DWFEYKNIAYARFDGASS 922
Query: 997 MKERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRI 1056
ER ++ F+ GGVG+NL A ++DP ++P + QAI R
Sbjct: 923 EMERQSAIDSFNAPNSELSCFLLSTRA-GGVGINLASADTVIILDPDFNPHQDMQAIARA 981
Query: 1057 HRIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGD-IVEG-DEAERRQKRIEEI 1109
HR GQ++ V V +SVEEK+++ ++K +L IVE D+ +K +E I
Sbjct: 982 HRYGQKKKVLVFVLTTRDSVEEKIIQNAQKKLVLDHLIVESLDQNHNSEKDLESI 1036
>Hs4557453 [R] KOG0383 Predicted helicase
Length = 1912
Score = 76.3 bits (186), Expect = 3e-13
Identities = 47/157 (29%), Positives = 79/157 (49%), Gaps = 7/157 (4%)
Query: 938 STKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDM 997
S K+ L + LK ++E G ++++FSQ + LD+LE L + + DG +
Sbjct: 1049 SGKLLLLQKMLKNLKEG--GHRVLIFSQMTKMLDLLE----DFLEHEGYKYERIDGGITG 1102
Query: 998 KERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIH 1057
R +++F+ GG+G+NL A + D W+P + QA R H
Sbjct: 1103 NMRQEAIDRFNAPGAQQFCFLLSTRA-GGLGINLATADTVIIYDSDWNPHNDIQAFSRAH 1161
Query: 1058 RIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGDIV 1094
RIGQ + V + RF+ SVEE++ ++ ++K ML +V
Sbjct: 1162 RIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLV 1198
Score = 67.8 bits (164), Expect = 9e-11
Identities = 80/334 (23%), Positives = 142/334 (41%), Gaps = 84/334 (25%)
Query: 481 ILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHDT 540
ILADEMGLGKT+ A+ + Y E H K P
Sbjct: 748 ILADEMGLGKTVQT-AVFLYSLYKEGHSK-------------------GPF--------- 778
Query: 541 YAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKDLRAYVL----------- 589
L+ P+S + W+ EFE D+ Y G+ KD RA +
Sbjct: 779 ------LVSAPLSTIINWEREFEMWAPDMY--VVTYVGD--KDSRAIIRENEFSFEDNAI 828
Query: 590 --GPNAPS----------VIITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRST 637
G A V++T+Y +I + L ++ + +I+DE H ++N +
Sbjct: 829 RGGKKASRMKKEASVKFHVLLTSYELITIDMAI-----LGSIDWACLIVDEAHRLKNNQS 883
Query: 638 RTSKAVIALRSSRKWILTGTPIINRLDDLFSLVQFLNLEPWSHI-NYWKRYVSVPFEKGN 696
+ + + K +LTGTP+ N L++LF L+ FL E + ++ + + + + E
Sbjct: 884 KFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEFADIAKE--- 940
Query: 697 YAQAFDVINAVLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLED 756
++ +L P +LRR K DV ++P K ++ +++LS +K+ Y+ +L
Sbjct: 941 --DQIKKLHDMLGPHMLRRLK--ADV----FKNMPSKTELIVRVELSPMQKKYYKYILTR 992
Query: 757 AENSVKEGLAKGDLLKNYTNILVHILRLRQVCCH 790
++ A+G N ++L ++ L++ C H
Sbjct: 993 NFEALN---ARGG--GNQVSLLNVVMDLKKCCNH 1021
>Hs21914927 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 838
Score = 76.3 bits (186), Expect = 3e-13
Identities = 72/290 (24%), Positives = 119/290 (40%), Gaps = 64/290 (22%)
Query: 480 GILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHD 539
GILADEMGLGKT+ +A I M + P
Sbjct: 244 GILADEMGLGKTVQCIATIAL---------------------MIQRGVPGPF-------- 274
Query: 540 TYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNN------IKDLRAYVLGPNA 593
L+ P+S L W +EF++ D+ +Y+G ++++
Sbjct: 275 -------LVCGPLSTLPNWMAEFKRFTPDIPTM--LYHGTQEERQKLVRNIYKRKGTLQI 325
Query: 594 PSVIITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWI 653
V+IT++ I + + L + + +I+DEGH I+N R + + + K +
Sbjct: 326 HPVVITSFEIAMRD-----RNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLL 380
Query: 654 LTGTPIINRLDDLFSLVQFL---------NLEPWSHINYWKRYVSVPFEKGNYAQAFDVI 704
LTGTP+ N L +L+SL+ FL + E W I K ++
Sbjct: 381 LTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHML 440
Query: 705 NAVLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSML 754
+ +L P LLRR K+ DV + +PPK +V LS ++ Y +++
Sbjct: 441 HQILTPFLLRRLKS--DV----ALEVPPKREVVVYAPLSKKQEIFYTAIV 484
Score = 70.1 bits (170), Expect = 2e-11
Identities = 46/157 (29%), Positives = 76/157 (48%), Gaps = 8/157 (5%)
Query: 938 STKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDM 997
S K L R L ++++ G ++++FSQ +S LDIL + + DG +
Sbjct: 598 SGKFLILDRMLPELKKR--GHKVLLFSQMTSMLDIL----MDYCHLRDFNFSRLDGSMSY 651
Query: 998 KERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIH 1057
ER + + F+ GG+G+NLT A + D W+P + QA DR H
Sbjct: 652 SEREKNMHSFNTDPEVFIFLVSTRA--GGLGINLTAADTVIIYDSDWNPQSDLQAQDRCH 709
Query: 1058 RIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGDIV 1094
RIGQ + V V R + N++++K++ KR L ++
Sbjct: 710 RIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLI 746
>CE23294 [KL] KOG4439 RNA polymerase II transcription termination factor
TTF2/lodestar DEAD-box superfamily
Length = 540
Score = 76.3 bits (186), Expect = 3e-13
Identities = 58/208 (27%), Positives = 89/208 (41%), Gaps = 35/208 (16%)
Query: 478 NGGILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHK 537
+GGIL G GKT +ALI A K K P
Sbjct: 64 SGGILGLAHGQGKTAIVIALILDQKIKCASNDKKFEQKSP-------------------- 103
Query: 538 HDTYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKDLRAYVLGPNAPS-- 595
TLI+VP ++ QW EF+ ++ +YY + + R +
Sbjct: 104 --------TLIIVPKRIIYQWYDEFKDRLEENALSVYLYYDDEFSEARKNISASELQKYD 155
Query: 596 VIITTYGII----QSEYG-RTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSR 650
V++TTY + + E G + S L N+ + RI+LDE H IR+ +T+ S A+ L S
Sbjct: 156 VVLTTYRNVPVKEKDETGEKVSKQVLQNIKWTRIVLDEAHNIRDSNTKKSTAIATLASKN 215
Query: 651 KWILTGTPIINRLDDLFSLVQFLNLEPW 678
+W +T P N D+ +L+ FL +P+
Sbjct: 216 RWCVTAAPFQNSEWDICNLILFLGNKPF 243
>At2g13370 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1738
Score = 76.3 bits (186), Expect = 3e-13
Identities = 75/320 (23%), Positives = 150/320 (46%), Gaps = 68/320 (21%)
Query: 481 ILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHDT 540
ILADEMGLGKT+ +++++ L+++Q
Sbjct: 663 ILADEMGLGKTVQSVSML------------------------------GFLQNTQQIPGP 692
Query: 541 YAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYG--------NNIKDLRAYVLGPN 592
+ L+VVP+S L W EF K + +Y G N D+ V P
Sbjct: 693 F-----LVVVPLSTLANWAKEFRKWLPGMN--IIVYVGTRASREVRNKTNDVHK-VGRPI 744
Query: 593 APSVIITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKW 652
+ ++TTY ++ + + L + + +++DE H ++N + A++ + K
Sbjct: 745 KFNALLTTYEVVLKD-----KAVLSKIKWIYLMVDEAHRLKNSEAQLYTALLEFSTKNKL 799
Query: 653 ILTGTPIINRLDDLFSLVQFLNLEPWSHIN-YWKRYVSV-PFEKGNYAQAFDVINAVLEP 710
++TGTP+ N +++L++L+ FL+ + + + + + Y ++ F + A ++ L P
Sbjct: 800 LITGTPLQNSVEELWALLHFLDPGKFKNKDEFVENYKNLSSFNESELAN----LHLELRP 855
Query: 711 VLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGLAKGDL 770
+LRR +KDV+ SLPPK + ++++S +K+ Y+ +LE + + +G+
Sbjct: 856 HILRRV--IKDVE----KSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVR---- 905
Query: 771 LKNYTNILVHILRLRQVCCH 790
N ++L ++ L++ C H
Sbjct: 906 -GNQVSLLNIVVELKKCCNH 924
Score = 73.6 bits (179), Expect = 2e-12
Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 7/157 (4%)
Query: 938 STKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDM 997
S K+ L + L +++ET ++++FSQ LDIL +L + DG
Sbjct: 952 SGKLVILDKLLVRLRETK--HRVLIFSQMVRMLDILA----EYLSLRGFQFQRLDGSTKA 1005
Query: 998 KERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIH 1057
+ R + ++ F+ GG+G+NL A + D W+P + QA+ R H
Sbjct: 1006 ELRQQAMDHFNAPASDDFCFLLSTRA-GGLGINLATADTVVIFDSDWNPQNDLQAMSRAH 1064
Query: 1058 RIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGDIV 1094
RIGQQ+ V + RF+ SVEE++L +RK +L +V
Sbjct: 1065 RIGQQEVVNIYRFVTSKSVEEEILERAKRKMVLDHLV 1101
>YGL150c [L] KOG0388 SNF2 family DNA-dependent ATPase
Length = 1489
Score = 75.9 bits (185), Expect = 3e-13
Identities = 45/172 (26%), Positives = 90/172 (52%), Gaps = 9/172 (5%)
Query: 937 QSTKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLD 996
+S K++ L L +++ S G +++++ Q + +D++E +L Q + DG
Sbjct: 1297 ESAKLRKLDELLVKLK--SEGHRVLIYFQMTKMMDLME----EYLTYRQYNHIRLDGSSK 1350
Query: 997 MKERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRI 1056
+++R ++ + GG+G+NLT A D W+P ++ QA+DR
Sbjct: 1351 LEDRRDLVHDWQTNPEIFVFLLSTRA--GGLGINLTAADTVIFYDSDWNPTIDSQAMDRA 1408
Query: 1057 HRIGQQQTVKVVRFIIDNSVEEKML-RIQERKRMLGDIVEGDEAERRQKRIE 1107
HR+GQ + V V R ++ ++EE+M R ++++++ ++EG E+ K IE
Sbjct: 1409 HRLGQTRQVTVYRLLVRGTIEERMRDRAKQKEQVQQVVMEGKTQEKNIKTIE 1460
Score = 73.2 bits (178), Expect = 2e-12
Identities = 92/387 (23%), Positives = 155/387 (39%), Gaps = 89/387 (22%)
Query: 452 EDDCFFYANLYTGEFSIEKPVIKTI--------------------INGGILADEMGLGKT 491
ED+ F GE +IE+P I ING ILADEMGLGKT
Sbjct: 680 EDELNFQNPTSLGEITIEQPKILACTLKEYQLKGLNWLANLYDQGING-ILADEMGLGKT 738
Query: 492 ISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHDTYAYRTTLIVVP 551
+ ++++ L H H+ + L+V P
Sbjct: 739 VQSISV---------------------------------LAHLAENHNIWG--PFLVVTP 763
Query: 552 MSLLNQWQSEFEKANKDLKKRCEIYYGNNIKDLRAYV------LGPNAP-SVIITTYGII 604
S L+ W +E K K N+ K LR + NAP V++T+Y ++
Sbjct: 764 ASTLHNWVNEISKFLPQFKILPYWGNANDRKVLRKFWDRKNLRYNKNAPFHVMVTSYQMV 823
Query: 605 QSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWILTGTPIINRLD 664
T + L + + +ILDE I++ + K +++ + +LTGTPI N +
Sbjct: 824 V-----TDANYLQKMKWQYMILDEAQAIKSSQSSRWKNLLSFHCRNRLLLTGTPIQNSMQ 878
Query: 665 DLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYA------QAFDVINAVLEPVLLRRTKN 718
+L++L+ F+ + + + + S E A Q ++ +L+P +LRR K
Sbjct: 879 ELWALLHFIMPSLFDSHDEFNEWFSKDIESHAEANTKLNQQQLRRLHMILKPFMLRRVK- 937
Query: 719 MKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVK--EGLAKGDLLKNYT- 775
K+V + L K I L+ + ++YQ + + E A D N
Sbjct: 938 -KNVQSE----LGDKIEIDVLCDLTQRQAKLYQVLKSQISTNYDAIENAATNDSTSNSAS 992
Query: 776 ------NILVHILRLRQVCCHLDLLKK 796
N++ +++ R+VC H DL ++
Sbjct: 993 NSGSDQNLINAVMQFRKVCNHPDLFER 1019
>SPCP25A2.02c [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26 (contains
SNF2 family DNA-dependent ATPase domain)
Length = 973
Score = 75.9 bits (185), Expect = 3e-13
Identities = 55/173 (31%), Positives = 88/173 (50%), Gaps = 10/173 (5%)
Query: 941 IKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDMKER 1000
I+ALL K+ G + ++FSQ LDILEI L+ LP V + DG + R
Sbjct: 630 IRALLTLWKK-----QGHRTLLFSQTRQMLDILEIGLKD-LP--DVHYCRMDGSTSIALR 681
Query: 1001 TRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIG 1060
+++ F+ GG+G+NLT A R + DP W+P + QA +R R+G
Sbjct: 682 QDLVDNFNKNEYFDVFLLTTR--VGGLGVNLTGADRVILFDPDWNPSTDAQARERAWRLG 739
Query: 1061 QQQTVKVVRFIIDNSVEEKMLRIQERKRMLGDIVEGDEAERRQKRIEEIQMLF 1113
Q++ V V R + ++EEK+ Q K+ L + + D +RR ++ ++ LF
Sbjct: 740 QKKDVVVYRLMTAGTIEEKIYHRQIFKQFLTNKILKDPKQRRFFKMTDLHDLF 792
Score = 73.2 bits (178), Expect = 2e-12
Identities = 87/341 (25%), Positives = 147/341 (42%), Gaps = 53/341 (15%)
Query: 479 GGILADEMGLGKTISALALICTASYDEAHEKK-IESTKKPSMKEMSSQVDS--SPLRHSQ 535
GGI+ DEMGLGKTI ++ + + + +K + MK+ ++ + +PLR
Sbjct: 297 GGIIGDEMGLGKTIQIVSFLSSLHHSGKFQKPALIVCPATLMKQWVNEFHTWWAPLRVVV 356
Query: 536 HKHDTYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKR-CEIYYGNNIKDLRAYVLGPNAP 594
H T + + + +SE E++ +K R + K+L V
Sbjct: 357 -LHATGSGQRASREKRQYESDASESEAEESKTSIKLRGASSSFHRYAKNLVESVF--TRG 413
Query: 595 SVIITTYG--------IIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIAL 646
++ITTY I+ E+G +LDEGH IRN + S + +
Sbjct: 414 HILITTYAGLRIYGDLILPREWGYC-------------VLDEGHKIRNPDSEISISCKQI 460
Query: 647 RSSRKWILTGTPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQAFDV--- 703
R+ + IL+GTPI N L +L++L F+ + ++ ++P G YA A +V
Sbjct: 461 RTVNRIILSGTPIQNNLTELWNLFDFVFPGRLGTLPVFQNQFALPINIGGYANASNVQVQ 520
Query: 704 --------INAVLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLE 755
+ ++ P LLRR K DV LP K V +L+ +++ YQ L+
Sbjct: 521 TAYKCACMLRDLISPYLLRRMK--LDV----AADLPKKSEQVLFCKLTPLQRKAYQDFLQ 574
Query: 756 DAENSVKEGLAKGDLLKNYTNILVHILRLRQVCCHLDLLKK 796
++ +L +L I LR++C H DL+ +
Sbjct: 575 GSDMQ--------KILNGKRQMLYGIDILRKICNHPDLVTR 607
>Hs20533808 [R] KOG0383 Predicted helicase
Length = 1954
Score = 75.5 bits (184), Expect = 4e-13
Identities = 47/157 (29%), Positives = 80/157 (50%), Gaps = 7/157 (4%)
Query: 938 STKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDM 997
S K+ L + LK++++ G ++++FSQ + LD+LE L + + DG +
Sbjct: 1023 SGKLMLLQKMLKKLRDE--GHRVLIFSQMTKMLDLLE----DFLEYEGYKYERIDGGITG 1076
Query: 998 KERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIH 1057
R +++F+ GG+G+NL A + D W+P + QA R H
Sbjct: 1077 GLRQEAIDRFNAPGAQQFCFLLSTRA-GGLGINLATADTVIIYDSDWNPHNDIQAFSRAH 1135
Query: 1058 RIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGDIV 1094
RIGQ + V + RF+ SVEE++ ++ +RK ML +V
Sbjct: 1136 RIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLV 1172
Score = 70.1 bits (170), Expect = 2e-11
Identities = 72/314 (22%), Positives = 144/314 (44%), Gaps = 44/314 (14%)
Query: 481 ILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHDT 540
ILADEMGLGKT+ + + + Y E H K P S + + D
Sbjct: 722 ILADEMGLGKTVQTIVFLYSL-YKEGHSKGPYLVSAPL-----STIINWEREFEMWAPDF 775
Query: 541 YAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKDLRAYVLGPNAPSVIITT 600
Y T S++ + +EF + ++ +++ ++ +VL +T+
Sbjct: 776 YVVTYTGDKESRSVIRE--NEFSFEDNAIRSGKKVFRMKKEVQIKFHVL--------LTS 825
Query: 601 YGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWILTGTPII 660
Y +I + L ++ + +++DE H ++N ++ + + + + K +LTGTP+
Sbjct: 826 YELITIDQAI-----LGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQ 880
Query: 661 NRLDDLFSLVQFLNLEPWSHI-NYWKRYVSVPFEKGNYAQAFDVINAVLEPVLLRRTKNM 719
N L++LF L+ FL E ++++ + + + + E ++ +L P +LRR K
Sbjct: 881 NNLEELFHLLNFLTPERFNNLEGFLEEFADISKE-----DQIKKLHDLLGPHMLRRLK-- 933
Query: 720 KDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLE---DAENSVKEGLAKGDLLKNYTN 776
DV ++P K ++ +++LS +K+ Y+ +L +A NS G N +
Sbjct: 934 ADV----FKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGG--------NQVS 981
Query: 777 ILVHILRLRQVCCH 790
+L ++ L++ C H
Sbjct: 982 LLNIMMDLKKCCNH 995
>Hs20536191 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 897
Score = 75.1 bits (183), Expect = 6e-13
Identities = 76/301 (25%), Positives = 135/301 (44%), Gaps = 57/301 (18%)
Query: 478 NGGILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHK 537
NG IL DEMGLGKT +AL + D P
Sbjct: 65 NGCILGDEMGLGKTCQTIALFIYLA--------------------GRLNDEGPF------ 98
Query: 538 HDTYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKD--LRAYVLGPNAPS 595
LI+ P+S+L+ W+ E ++ L C Y G+ + L+ + +
Sbjct: 99 ---------LILCPLSVLSNWKEEMQRFAPGLS--CVTYAGDKEERACLQQDLKQESRFH 147
Query: 596 VIITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWILT 655
V++TTY I + S L + + +++DE H ++N+S+ K + +LT
Sbjct: 148 VLLTTYEICLKD-----ASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLT 202
Query: 656 GTPIINRLDDLFSLVQFLNLEPWSHI---NYWKRYVSVPFEKGNYAQAFDVINAVLEPVL 712
GTPI N L +L+SL+ F+ + +S ++ +RY + E +++ + ++ +L+P L
Sbjct: 203 GTPIQNSLQELYSLLSFVEPDLFSKEEVGDFIQRYQDIEKE----SESGNELHKLLQPFL 258
Query: 713 LRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGLAKGDLLK 772
LRR K + LP K +V +S+ +K+ Y+++L ++ + AK L+
Sbjct: 259 LRRVK------AEVATELPKKTEVVIYHGMSALQKKYYKAILMKDLDAFENETAKKVKLQ 312
Query: 773 N 773
N
Sbjct: 313 N 313
Score = 63.9 bits (154), Expect = 1e-09
Identities = 46/143 (32%), Positives = 72/143 (50%), Gaps = 8/143 (5%)
Query: 955 SPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDMKERTRILEQFHXXXXXX 1014
S G ++++FSQ + LDIL+ ++ + DG + +ER ++ F
Sbjct: 361 SGGHRVLLFSQMTQMLDILQ----DYMDYRGYSYERVDGSVRGEERHLAIKNF---GQQP 413
Query: 1015 XXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDN 1074
GGVG+NLT A +D ++P + QA R HRIGQ ++VKV+R I +
Sbjct: 414 IFVFLLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRD 473
Query: 1075 SVEEKMLRIQERKRMLGD-IVEG 1096
+VEE + R K L + I+EG
Sbjct: 474 TVEEIVYRKAASKLQLTNMIIEG 496
>7294205 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1638
Score = 75.1 bits (183), Expect = 6e-13
Identities = 87/324 (26%), Positives = 150/324 (45%), Gaps = 63/324 (19%)
Query: 480 GILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHD 539
GILADEMGLGKTI ++L+ T D KK+
Sbjct: 794 GILADEMGLGKTIQTISLV-TYLMDR---KKVMGPY------------------------ 825
Query: 540 TYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKDLRAYVLGPNAP--SVI 597
LI+VP+S L W EFEK + + Y + + R A +V+
Sbjct: 826 -------LIIVPLSTLPNWVLEFEKWAPAVGV---VSYKGSPQGRRLLQNQMRATKFNVL 875
Query: 598 ITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIA-LRSSRKWILTG 656
+TTY EY + L + + +I+DEGH ++N + ++ + + + +LTG
Sbjct: 876 LTTY-----EYVIKDKAVLAKIQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPYRLLLTG 930
Query: 657 TPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPF----EKGNYAQAFDV-----INAV 707
TP+ N+L +L++L+ FL + + ++++ + PF EK + + ++ V
Sbjct: 931 TPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKV 990
Query: 708 LEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGLAK 767
L P LLRR K K+V+ + LP K + K +S+ ++ +Y+ M + + +G K
Sbjct: 991 LRPFLLRRLK--KEVEHQ----LPDKVEYIIKCDMSALQRVLYKHM-QSKGVLLTDGSEK 1043
Query: 768 GDLLKNYTNILVH-ILRLRQVCCH 790
G K L++ I++LR++C H
Sbjct: 1044 GKHGKGGAKALMNTIVQLRKLCNH 1067
Score = 68.2 bits (165), Expect = 7e-11
Identities = 49/176 (27%), Positives = 86/176 (48%), Gaps = 8/176 (4%)
Query: 938 STKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDM 997
S K + L R L +++ T+ ++++F Q + + I+E +L Q + DG
Sbjct: 1097 SGKFELLDRILPKLKATN--HRVLLFCQMTQCMTIIE----DYLGWRQFGYLRLDGTTKA 1150
Query: 998 KERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIH 1057
++R +L +F+ GG+GLNL A + D W+P + QA DR H
Sbjct: 1151 EDRGELLRKFNAKGSDVFVFLLSTRA-GGLGLNLQTADTVVIFDSDWNPHQDLQAQDRAH 1209
Query: 1058 RIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGD-IVEGDEAERRQKRIEEIQML 1112
RIGQ+ V+V+R + NSVEE++L K + + +++ +++ E Q L
Sbjct: 1210 RIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQAGMFDQKSTGSERQQFL 1265
>CE25143 [L] KOG0390 DNA repair protein SNF2 family
Length = 818
Score = 74.7 bits (182), Expect = 7e-13
Identities = 54/186 (29%), Positives = 94/186 (50%), Gaps = 10/186 (5%)
Query: 931 SFHSHFQSTKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEI-ELRSHLPRDQVIIY 989
SF F S K+K L L ++T+ + ++V + + +E+ +LR +
Sbjct: 540 SFDPSF-SGKMKVLDYILAVTRKTTDDKFVLVSNYTQTIDQFMELCKLRGY------DFV 592
Query: 990 KFDGRLDMKERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGME 1049
+ DG + +K+R++I++ F+ GG GLNL A+R M DP W+P +
Sbjct: 593 RLDGSMSIKQRSKIVDTFNDPASTIFCFLLSSKA-GGCGLNLIGANRLVMFDPDWNPAND 651
Query: 1050 DQAIDRIHRIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGD-IVEGDEAERRQKRIEE 1108
DQA+ R+ R GQ++ + R + S+EEKM + Q K+ L +V+ E R E+
Sbjct: 652 DQAMARVWRDGQKKMCFIYRLLATGSIEEKMFQRQTHKKALSSCVVDAGEDVARHFSSEQ 711
Query: 1109 IQMLFQ 1114
++ LF+
Sbjct: 712 LRELFK 717
Score = 62.4 bits (150), Expect = 4e-09
Identities = 58/203 (28%), Positives = 89/203 (43%), Gaps = 42/203 (20%)
Query: 478 NGGILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHK 537
+G I+ADEMGLGKT+ ++L+ T LR S
Sbjct: 226 HGCIMADEMGLGKTLQCISLLWTL-----------------------------LRQSPDA 256
Query: 538 HDTYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNN---IKDLRAYVLGPN-- 592
T + ++IV P SL+ W E +K + G I L +++
Sbjct: 257 CPTVS--KSIIVCPSSLVKNWDKEIKKWLGTRLNAMPVDSGKREQIIACLNSFMADSKMR 314
Query: 593 -APSVIITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRK 651
A V+I +Y + Y SG +V I DEGH ++N T +A+ L+ +R+
Sbjct: 315 CAIPVLIISYETFRL-YANILHSGDVGIV----ICDEGHRLKNSENLTYQALSGLKCARR 369
Query: 652 WILTGTPIINRLDDLFSLVQFLN 674
+++GTPI N L + FSLV F+N
Sbjct: 370 VLISGTPIQNDLLEYFSLVNFVN 392
>YER164w [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1468
Score = 74.3 bits (181), Expect = 1e-12
Identities = 79/303 (26%), Positives = 136/303 (44%), Gaps = 66/303 (21%)
Query: 478 NGGILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHK 537
+ GILADEMGLGKT+ +A I + R
Sbjct: 395 DNGILADEMGLGKTVQTVAFISWLIF---------------------------ARRQNGP 427
Query: 538 HDTYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNN-----IKDLRAYVLGPN 592
H +IVVP+S + W FEK DL C Y GN I++ Y P
Sbjct: 428 H--------IIVVPLSTMPAWLDTFEKWAPDLN--CICYMGNQKSRDTIREYEFYT-NPR 476
Query: 593 AP-------SVIITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIA 645
A +V++TTY EY + L ++ + + +DE H ++N + +++ +
Sbjct: 477 AKGKKTMKFNVLLTTY-----EYILKDRAELGSIKWQFMAVDEAHRLKNAESSLYESLNS 531
Query: 646 LRSSRKWILTGTPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQAFDVIN 705
+ + + ++TGTP+ N + +L +LV FL ++ I+ + + E+ Y ++
Sbjct: 532 FKVANRMLITGTPLQNNIKELAALVNFLMPGRFT-IDQEIDFENQDEEQEEYIHD---LH 587
Query: 706 AVLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGL 765
++P +LRR K KDV+ SLP K + +++LS + Y+++L +++ G
Sbjct: 588 RRIQPFILRRLK--KDVE----KSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAG- 640
Query: 766 AKG 768
AKG
Sbjct: 641 AKG 643
Score = 63.2 bits (152), Expect = 2e-09
Identities = 40/134 (29%), Positives = 67/134 (49%), Gaps = 6/134 (4%)
Query: 957 GEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDMKERTRILEQFHXXXXXXXX 1016
G ++++FSQ LDIL +L + + DG + +R ++ F+
Sbjct: 711 GHRVLIFSQMVRMLDILG----DYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFV 766
Query: 1017 XXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSV 1076
GG+G+NL A + D W+P + QA+ R HRIGQ+ V V R + ++V
Sbjct: 767 FLLSTRA-GGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTV 825
Query: 1077 EEKMLRIQERKRML 1090
EE++L + RK+M+
Sbjct: 826 EEEVLE-RARKKMI 838
>YBR073w [L] KOG0390 DNA repair protein SNF2 family
Length = 958
Score = 74.3 bits (181), Expect = 1e-12
Identities = 52/178 (29%), Positives = 87/178 (48%), Gaps = 15/178 (8%)
Query: 931 SFHSHFQSTKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELR----SHLPRDQV 986
S+ S K+K L+ L+ I++ + E+++V S ++ LDI+E + SH
Sbjct: 656 SYSRSLNSGKLKVLMTLLEGIRKGTK-EKVVVVSNYTQTLDIIENLMNMAGMSHC----- 709
Query: 987 IIYKFDGRLDMKERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSP 1046
+ DG + K+R I+ F+ +GGVGLNL SR + D W+P
Sbjct: 710 ---RLDGSIPAKQRDSIVTSFNRNPAIFGFLLSAK--SGGVGLNLVGRSRLILFDNDWNP 764
Query: 1047 GMEDQAIDRIHRIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGDIVEGDEAERRQK 1104
++ QA+ RIHR GQ++ + R + ++EK+L+ Q K L GD R ++
Sbjct: 765 SVDLQAMSRIHRDGQKKPCFIYRLVTTGCIDEKILQRQLMKNSLSQKFLGDSEMRNKE 822
Score = 70.9 bits (172), Expect = 1e-11
Identities = 82/329 (24%), Positives = 143/329 (42%), Gaps = 52/329 (15%)
Query: 477 INGGILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQH 536
I+G +LAD+MGLGKT+ ++ LI T I T P ++S PL
Sbjct: 339 ISGCLLADDMGLGKTLMSITLIWTL---------IRQT--PFASKVSCSQSGIPL----- 382
Query: 537 KHDTYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKDL-----RAYVLGP 591
T + L+V P++L+ W+ EF K + N D+ R ++
Sbjct: 383 ---TGLCKKILVVCPVTLIGNWKREFGKWLNLSRIGVLTLSSRNSPDMDKMAVRNFLKVQ 439
Query: 592 NAPSVIITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRK 651
V+I Y + S + + ++ DEGH ++N +++ + +L RK
Sbjct: 440 RTYQVLIIGYEKLLSVSEELEKN---KHLIDMLVCDEGHRLKNGASKILNTLKSLDIRRK 496
Query: 652 WILTGTPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQAFDVINAVLEPV 711
+LTGTPI N L++ F+++ F+N +KR +P +A D N E +
Sbjct: 497 LLLTGTPIQNDLNEFFTIIDFINPGILGSFASFKRRFIIPI-----TRARDTANRYNEEL 551
Query: 712 LLR---RTKNMKDVDGKPLVS---------LPPKEVIVEKLQLSSSEKRVYQSMLEDAEN 759
L + R+K M ++ + ++ LPPK I+ + S + ++ +L+ A
Sbjct: 552 LEKGEERSKEMIEITKRFILRRTNAILEKYLPPKTDIILFCKPYSQQILAFKDILQGAR- 610
Query: 760 SVKEGLAKGDLLKNYTNILVHILRLRQVC 788
L G L +++ L I L++VC
Sbjct: 611 -----LDFGQL--TFSSSLGLITLLKKVC 632
>SPAC22F3.03c [L] KOG0390 DNA repair protein SNF2 family
Length = 768
Score = 73.6 bits (179), Expect = 2e-12
Identities = 80/320 (25%), Positives = 141/320 (44%), Gaps = 51/320 (15%)
Query: 481 ILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHDT 540
ILADEMGLGKT+ + ++ T L+ S + + +
Sbjct: 189 ILADEMGLGKTLQTITVVWTL-----------------------------LKQSYYANRS 219
Query: 541 YAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKDLRAYVLGPNAPSVIITT 600
++V P++LL W++EF N +R +Y +D + + S+IIT
Sbjct: 220 STINNAMVVAPVTLLKNWENEFY--NWLGHERIHVYIARCAEDFQEFTSNKTY-SIIITG 276
Query: 601 YGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWILTGTPII 660
Y + + Y R G + +I DE H +++ S++T + L++ ++ +LTGTP+
Sbjct: 277 YETVCT-YLRNYGCG---IDIDLLICDEAHRLKSMSSQTWITLNKLKTRKRLLLTGTPLQ 332
Query: 661 NRLDDLFSLVQFLNLEPWSHINYWKRYVSVPF--EKGNYAQAFDV-INAVLEPVLLRRTK 717
N L + FS+V F+ N +K P + A + D+ + A L T
Sbjct: 333 NDLSEYFSMVNFIIPGSLGTPNSFKAQYERPILRSRSMNASSRDISLGAARLQRLFEFTS 392
Query: 718 NMKDVDGKPLVS--LPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGLAKGDLLKNYT 775
N +++ LPP+ IV ++ + ++ VY +L+ ++SV + KG LK T
Sbjct: 393 NFTLRRKANILAKHLPPRTDIVLFIKPTHQQENVYGHVLDGFKSSVDQ---KGYYLKILT 449
Query: 776 NILVHILRLRQVCCHLDLLK 795
RL ++C LL+
Sbjct: 450 -------RLSKICNSTILLR 462
Score = 68.6 bits (166), Expect = 5e-11
Identities = 47/178 (26%), Positives = 84/178 (46%), Gaps = 8/178 (4%)
Query: 938 STKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDM 997
S+K++ L LK Q ++ ++ SQ+ L+++E+ L V K G
Sbjct: 488 SSKLQILAALLKSFQRGC--QKAVIVSQYKETLELIELFLSIL----HVRFCKLLGSTPF 541
Query: 998 KERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIH 1057
ER I+ F+ GG GLNLT ++R + +P W+P + QA+ RI+
Sbjct: 542 SERDLIVHNFNTSSFKEFSVLLLSSKAGGCGLNLTGSTRLIIYEPSWNPAQDLQALSRIY 601
Query: 1058 RIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGDIVEGDEAERRQKRI--EEIQMLF 1113
R GQ++ V + F+ ++E++ Q K+ L +A +++ E+I+ LF
Sbjct: 602 RSGQKRPVCIYTFLSSGMLDERIFIRQNTKQGLSSSFIDSDASQKKNFFTGEDIKTLF 659
>Hs15805014 [R] KOG0391 SNF2 family DNA-dependent ATPase
Length = 3124
Score = 73.6 bits (179), Expect = 2e-12
Identities = 78/318 (24%), Positives = 144/318 (44%), Gaps = 56/318 (17%)
Query: 480 GILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHD 539
GILADE GLGKT+ +A + +E +
Sbjct: 1076 GILADEAGLGKTVQIIAFFAHLACNEGN-------------------------------- 1103
Query: 540 TYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKDLRAYVLGPNAPSVIIT 599
+ L+VV + +W+ E ++ LK I +K R PN+ V IT
Sbjct: 1104 ---WGPHLVVVRSCNILKWELELKRWCPGLKILSYIGSHRELKAKRQEWAEPNSFHVCIT 1160
Query: 600 TYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWILTGTPI 659
+Y +++ R T+ V + +++DE ++ + R +AV L+S ++ +L +P+
Sbjct: 1161 SY----TQFFRGLTA-FTRVRWKCLVIDEMQRVKGMTERHWEAVFTLQSQQRLLLIDSPL 1215
Query: 660 INRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGN--YAQAFDVINAVLEPVLLRRTK 717
N +L+++V F L P Y + P E+ Y + ++ V +P +LRRTK
Sbjct: 1216 HNTFLELWTMVHF--LVPGISRPYLSSPLRAPSEESQDYYHKVVIRLHRVTQPFILRRTK 1273
Query: 718 NMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGLAKGDLLKNYTNI 777
+DV+ + L K V K +LS+ +K +Y+ ++ + +E L G ++ N+
Sbjct: 1274 --RDVEKQ----LTKKYEHVLKCRLSNRQKALYEDVI--LQPGTQEALKSG----HFVNV 1321
Query: 778 LVHILRLRQVCCHLDLLK 795
L ++RL+++C H L++
Sbjct: 1322 LSILVRLQRICNHPGLVE 1339
Score = 55.8 bits (133), Expect = 4e-07
Identities = 44/179 (24%), Positives = 81/179 (44%), Gaps = 8/179 (4%)
Query: 936 FQSTKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRL 995
F S K++AL L++++ S G ++++ SQ LDILE+ L H + + D
Sbjct: 1859 FDSGKLEALAILLQKLK--SEGRRVLILSQMILMLDILEMFLNFHY----LTYVRIDENA 1912
Query: 996 DMKERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDR 1055
++R ++ F+ T G+NL A D +P M+ +A +
Sbjct: 1913 SSEQRQELMRSFNRDRRIFCAILSTHSRT--TGINLVEADTVVFYDNDLNPVMDAKAQEW 1970
Query: 1056 IHRIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGDIVEGDEAERRQKRIEEIQMLFQ 1114
RIG+ + + + R + NS+EEK+L+ + + +G++ IQ LF+
Sbjct: 1971 CDRIGRCKDIHIYRLVSGNSIEEKLLKNGTKDLIREVAAQGNDYSMAFLTQRTIQELFE 2029
>ECU09g1890 [L] KOG0388 SNF2 family DNA-dependent ATPase
Length = 883
Score = 73.6 bits (179), Expect = 2e-12
Identities = 79/323 (24%), Positives = 138/323 (42%), Gaps = 70/323 (21%)
Query: 480 GILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHD 539
GILAD+MGLGKT+ +++L+ AH + E P
Sbjct: 296 GILADDMGLGKTVQSISLL-------AHLYETEEVPGPF--------------------- 327
Query: 540 TYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKDLRAYVLGPNAPSVIIT 599
L+V S L+ W EF + + + K+L+ + V+IT
Sbjct: 328 -------LVVTISSTLDNWAQEFARFLPSFRVCRFSGSPSERKELKKRFKNSD---VVIT 377
Query: 600 TYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWILTGTPI 659
TY S+ L + + +ILDE I++ +R K +++ ++ + +LTGTPI
Sbjct: 378 TYQTAVSD-----EKMLKKIKWQYMILDEAQAIKSSMSRRWKTLLSFKARNRLLLTGTPI 432
Query: 660 INRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFE------KGNYAQAFDVINAVLEPVLL 713
N + +L++L+ F+ + +N + + S E K ++ ++A+L+P +L
Sbjct: 433 QNSMQELWALLHFIMPTLFDSLNEFSDWFSKEIETSAIMKKTVDEKSLQRLHAILKPFML 492
Query: 714 RRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGLAKGDLLKN 773
RR K+ DV + L K I LS +K +Y+ + + E L
Sbjct: 493 RRHKS--DV----IHELGQKTQIDLYCDLSYRQKVLYKEITRSCSSMEMENL-------- 538
Query: 774 YTNILVHILRLRQVCCHLDLLKK 796
+++L++VC H DL KK
Sbjct: 539 -------LMQLKKVCNHPDLFKK 554
Score = 71.6 bits (174), Expect = 6e-12
Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 13/147 (8%)
Query: 957 GEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDMKERTRILEQFHXXXXXXXX 1016
G +++++ Q + +D++E +L R + DG L R ++ +
Sbjct: 742 GHRLLMYFQMTRMIDLIE----DYLVRKGYTYLRLDGSLKASARAEVIRDWQASDKFIFL 797
Query: 1017 XXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSV 1076
GG+G+NLT A D W+P + QA+DR HR+GQ + V V R I +V
Sbjct: 798 LSTRA---GGLGINLTAADTVVFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTV 854
Query: 1077 EEKMLRIQERKRML------GDIVEGD 1097
EEK+L RK + G+I EG+
Sbjct: 855 EEKVLESANRKDEIQKMVIHGNIFEGE 881
>Hs20336209 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box superfamily
Length = 2492
Score = 72.4 bits (176), Expect = 4e-12
Identities = 55/194 (28%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 938 STKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILE--IELRSHLP---RDQVIIYKFD 992
S K+ L L+ +E G++++VFSQ LD++E +EL S +D+ +IYK +
Sbjct: 2017 SGKMVLLFEILRMAEEI--GDKVLVFSQSLISLDLIEDFLELASREKTEDKDKPLIYKGE 2074
Query: 993 G---------RLD----MKERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFM 1039
G RLD + R + E+F+ G +G+NL A+R +
Sbjct: 2075 GKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVII 2134
Query: 1040 MDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGDIVEGDEA 1099
D W+P + Q+I R++R GQ + V V RF+ ++E+K+ Q K+ L V +
Sbjct: 2135 FDASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVDQQQ 2194
Query: 1100 ERRQKRIEEIQMLF 1113
R + E+ L+
Sbjct: 2195 VERHFTMNELTELY 2208
Score = 70.1 bits (170), Expect = 2e-11
Identities = 74/300 (24%), Positives = 127/300 (41%), Gaps = 57/300 (19%)
Query: 478 NGGILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHK 537
+G ILA MGLGKT+ ++ + H+
Sbjct: 1588 SGCILAHCMGLGKTLQVVSFL----------------------------------HTVLL 1613
Query: 538 HDTYAYRTTLIVVPMSLLNQWQSEFEKANKDLK--KRCEIYYGNNIK--DLRAYVLG--P 591
D + T L+V P++ W +EFEK + LK ++ E+ +K R+Y+L
Sbjct: 1614 CDKLDFSTALVVCPLNTALNWMNEFEKWQEGLKDDEKLEVSELATVKRPQERSYMLQRWQ 1673
Query: 592 NAPSVIITTYGIIQS-EYGRTSTSGLFNVVFFR---------IILDEGHTIRNRSTRTSK 641
V+I Y + ++ GR S +F + ++ DEGH ++N ++ SK
Sbjct: 1674 EDGGVMIIGYEMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEASAVSK 1733
Query: 642 AVIALRSSRKWILTGTPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQAF 701
A+ ++RS R+ ILTGTP+ N L + +V F+ I ++ P + G A +
Sbjct: 1734 AMNSIRSRRRIILTGTPLQNNLIEYHCMVNFIKENLLGSIKEFRNRFINPIQNGQCADST 1793
Query: 702 DVINAVLEP------VLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLE 755
V V++ +L KD LPPK V ++++S + ++YQ L+
Sbjct: 1794 MVDVRVMKKRAHILYEMLAGCVQRKDYTALTKF-LPPKHEYVLAVRMTSIQCKLYQYYLD 1852
>Hs20336207 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box superfamily
Length = 2288
Score = 72.4 bits (176), Expect = 4e-12
Identities = 55/194 (28%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 938 STKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILE--IELRSHLP---RDQVIIYKFD 992
S K+ L L+ +E G++++VFSQ LD++E +EL S +D+ +IYK +
Sbjct: 1813 SGKMVLLFEILRMAEEI--GDKVLVFSQSLISLDLIEDFLELASREKTEDKDKPLIYKGE 1870
Query: 993 G---------RLD----MKERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFM 1039
G RLD + R + E+F+ G +G+NL A+R +
Sbjct: 1871 GKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVII 1930
Query: 1040 MDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGDIVEGDEA 1099
D W+P + Q+I R++R GQ + V V RF+ ++E+K+ Q K+ L V +
Sbjct: 1931 FDASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVDQQQ 1990
Query: 1100 ERRQKRIEEIQMLF 1113
R + E+ L+
Sbjct: 1991 VERHFTMNELTELY 2004
Score = 70.1 bits (170), Expect = 2e-11
Identities = 74/300 (24%), Positives = 127/300 (41%), Gaps = 57/300 (19%)
Query: 478 NGGILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHK 537
+G ILA MGLGKT+ ++ + H+
Sbjct: 1384 SGCILAHCMGLGKTLQVVSFL----------------------------------HTVLL 1409
Query: 538 HDTYAYRTTLIVVPMSLLNQWQSEFEKANKDLK--KRCEIYYGNNIK--DLRAYVLG--P 591
D + T L+V P++ W +EFEK + LK ++ E+ +K R+Y+L
Sbjct: 1410 CDKLDFSTALVVCPLNTALNWMNEFEKWQEGLKDDEKLEVSELATVKRPQERSYMLQRWQ 1469
Query: 592 NAPSVIITTYGIIQS-EYGRTSTSGLFNVVFFR---------IILDEGHTIRNRSTRTSK 641
V+I Y + ++ GR S +F + ++ DEGH ++N ++ SK
Sbjct: 1470 EDGGVMIIGYEMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEASAVSK 1529
Query: 642 AVIALRSSRKWILTGTPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQAF 701
A+ ++RS R+ ILTGTP+ N L + +V F+ I ++ P + G A +
Sbjct: 1530 AMNSIRSRRRIILTGTPLQNNLIEYHCMVNFIKENLLGSIKEFRNRFINPIQNGQCADST 1589
Query: 702 DVINAVLEP------VLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLE 755
V V++ +L KD LPPK V ++++S + ++YQ L+
Sbjct: 1590 MVDVRVMKKRAHILYEMLAGCVQRKDYTALTKF-LPPKHEYVLAVRMTSIQCKLYQYYLD 1648
>Hs20336205 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box superfamily
Length = 2454
Score = 72.4 bits (176), Expect = 4e-12
Identities = 55/194 (28%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 938 STKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILE--IELRSHLP---RDQVIIYKFD 992
S K+ L L+ +E G++++VFSQ LD++E +EL S +D+ +IYK +
Sbjct: 1979 SGKMVLLFEILRMAEEI--GDKVLVFSQSLISLDLIEDFLELASREKTEDKDKPLIYKGE 2036
Query: 993 G---------RLD----MKERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFM 1039
G RLD + R + E+F+ G +G+NL A+R +
Sbjct: 2037 GKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVII 2096
Query: 1040 MDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGDIVEGDEA 1099
D W+P + Q+I R++R GQ + V V RF+ ++E+K+ Q K+ L V +
Sbjct: 2097 FDASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVDQQQ 2156
Query: 1100 ERRQKRIEEIQMLF 1113
R + E+ L+
Sbjct: 2157 VERHFTMNELTELY 2170
Score = 70.1 bits (170), Expect = 2e-11
Identities = 74/300 (24%), Positives = 127/300 (41%), Gaps = 57/300 (19%)
Query: 478 NGGILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHK 537
+G ILA MGLGKT+ ++ + H+
Sbjct: 1550 SGCILAHCMGLGKTLQVVSFL----------------------------------HTVLL 1575
Query: 538 HDTYAYRTTLIVVPMSLLNQWQSEFEKANKDLK--KRCEIYYGNNIK--DLRAYVLG--P 591
D + T L+V P++ W +EFEK + LK ++ E+ +K R+Y+L
Sbjct: 1576 CDKLDFSTALVVCPLNTALNWMNEFEKWQEGLKDDEKLEVSELATVKRPQERSYMLQRWQ 1635
Query: 592 NAPSVIITTYGIIQS-EYGRTSTSGLFNVVFFR---------IILDEGHTIRNRSTRTSK 641
V+I Y + ++ GR S +F + ++ DEGH ++N ++ SK
Sbjct: 1636 EDGGVMIIGYEMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEASAVSK 1695
Query: 642 AVIALRSSRKWILTGTPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQAF 701
A+ ++RS R+ ILTGTP+ N L + +V F+ I ++ P + G A +
Sbjct: 1696 AMNSIRSRRRIILTGTPLQNNLIEYHCMVNFIKENLLGSIKEFRNRFINPIQNGQCADST 1755
Query: 702 DVINAVLEP------VLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLE 755
V V++ +L KD LPPK V ++++S + ++YQ L+
Sbjct: 1756 MVDVRVMKKRAHILYEMLAGCVQRKDYTALTKF-LPPKHEYVLAVRMTSIQCKLYQYYLD 1814
>At5g63950 [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26
(contains SNF2 family DNA-dependent ATPase domain)
Length = 1053
Score = 72.4 bits (176), Expect = 4e-12
Identities = 79/294 (26%), Positives = 126/294 (41%), Gaps = 68/294 (23%)
Query: 479 GGILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKH 538
GGIL D+MGLGKT+ IC+ H K I
Sbjct: 397 GGILGDDMGLGKTMQ----ICSFLAGLFHSKLI--------------------------- 425
Query: 539 DTYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIK----DLRAYVLGPNAP 594
+ L+V P +LL W E A L + YYG + K DL + G
Sbjct: 426 -----KRALVVAPKTLLPHWMKEL--ATVGLSQMTREYYGTSTKAREYDLHHILQGKG-- 476
Query: 595 SVIITTYGII-------QSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALR 647
+++TTY I+ Q + T + +ILDEGH I+N +T+ +K+++ +
Sbjct: 477 -ILLTTYDIVRNNTKALQGDDHYTDEDDEDGNKWDYMILDEGHLIKNPNTQRAKSLLEIP 535
Query: 648 SSRKWILTGTPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQAFDVINAV 707
SS + I++GTPI N L L S +F NY + Y+ +K + + + V
Sbjct: 536 SSHRIIISGTPIQNNLKAL-SFNRFKQ-------NY-EHYILRGTDKNATDREQRIGSTV 586
Query: 708 -------LEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSML 754
++P LRR K+ D L K+ IV L+L++ ++++Y++ L
Sbjct: 587 AKNLREHIQPFFLRRLKSEVFGDDGATSKLSKKDEIVVWLRLTACQRQLYEAFL 640
Score = 63.5 bits (153), Expect = 2e-09
Identities = 38/124 (30%), Positives = 62/124 (49%), Gaps = 2/124 (1%)
Query: 990 KFDGRLDMKERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGME 1049
+ DG +R + +E+F GG+GL LT A R ++DP W+P +
Sbjct: 740 RIDGTTKAPDRLKTVEEFQEGHVAPIFLLTSQ--VGGLGLTLTKADRVIVVDPAWNPSTD 797
Query: 1050 DQAIDRIHRIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGDIVEGDEAERRQKRIEEI 1109
+Q++DR +RIGQ + V V R + +VEEK+ R Q K L + + R +++
Sbjct: 798 NQSVDRAYRIGQTKDVIVYRLMTSATVEEKIYRKQVYKGGLFKTATEHKEQIRYFSQQDL 857
Query: 1110 QMLF 1113
+ LF
Sbjct: 858 RELF 861
>CE23323 [L] KOG0390 DNA repair protein SNF2 family
Length = 751
Score = 71.2 bits (173), Expect = 8e-12
Identities = 60/237 (25%), Positives = 110/237 (46%), Gaps = 21/237 (8%)
Query: 547 LIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKDLRAYVLGPNAPSVIITTYGIIQS 606
LI+VP SL+N W++EF+K + ++ I N D+ Y ++ + Y +I
Sbjct: 188 LIIVPSSLVNNWKAEFDKWWRLMRFPAVIALTAN--DITTY-----QSTIKLMPYLVISY 240
Query: 607 EYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWILTGTPIINRLDDL 666
+ + L + F ++ DEGH ++N + K +++L R+ ILTGTP+ N ++
Sbjct: 241 DLAQRHVEKLKIIRFDVMVCDEGHKLKNLDGKLRKTLLSLEIPRRLILTGTPMQNDFEEF 300
Query: 667 FSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQAFDVINAVLEPVLLRRTKNMKDVDGKP 726
+SL+ F+ + I +++ S E+ +N +++ +LRRT DVD
Sbjct: 301 YSLLDFVRPSVFGSIVEFRKMCSDRPEQ---------LNELIDECMLRRT--AADVD--- 346
Query: 727 LVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKEGLAKGDLLKNYTNILVHILR 783
L LP K + S +K V+ + + + L N+ +L+ LR
Sbjct: 347 LKHLPEKHEYILFCAASPIQKHVHSEICDYMTGDALSLIFFARQLANHPKLLLDNLR 403
Score = 67.0 bits (162), Expect = 2e-10
Identities = 47/162 (29%), Positives = 82/162 (50%), Gaps = 7/162 (4%)
Query: 937 QSTKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLD 996
+S K+ AL+ +K + E ++ S + LD+++ +L +L + + DG+
Sbjct: 433 ESGKLTALVDMIKCFRLLQ--ECTVIVSNYIETLDMIQ-QLCEYL---NFKVLRLDGKTQ 486
Query: 997 MKERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRI 1056
+ +R +++ F+ GGVGLNL ASR + D W+P + QA+ RI
Sbjct: 487 VPDRQKLVRTFNDHRDPSNIFLLSTKA-GGVGLNLIGASRLVLFDSDWNPANDQQAMARI 545
Query: 1057 HRIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGDIVEGDE 1098
R GQ + + R I ++EEKML+ Q +K LG +++ E
Sbjct: 546 WRDGQVRPCHIYRLITTGTIEEKMLQRQIKKTGLGCVIDAIE 587
>CE15856 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 1529
Score = 71.2 bits (173), Expect = 8e-12
Identities = 78/330 (23%), Positives = 133/330 (39%), Gaps = 79/330 (23%)
Query: 480 GILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHD 539
GILAD+MGLGKT+ + I S + M E
Sbjct: 1003 GILADDMGLGKTLQTMCSIAL------------SVDRDEMSEF----------------- 1033
Query: 540 TYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKDLRAYVLGPNAPSVIIT 599
+R +LIV P +L++ W E+ + ++ + + A +I
Sbjct: 1034 ---HRCSLIVCPRTLVDHWCLEWNR-----------FFPQRVPASKNLTRCHGAEICVIA 1079
Query: 600 TYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWILTGTPI 659
Y T+ + + V+ I+LDEGH +RN R K L + IL+GTP+
Sbjct: 1080 --------YDELKTAYMMDRVWNYIVLDEGHVMRNSKLRAWKFASQLVGKSRLILSGTPV 1131
Query: 660 INRLDDLFSLVQ-----FLNLEPWSHINYWKRYVSVPFEKGNYAQ------AFDVINAVL 708
N DL+SL +L E + K+ + K N A A ++ ++
Sbjct: 1132 QNSPADLWSLFAWLMPGYLGSEKQFRSQFLKKIMKCRLPKANEADLKAGSAAISQLHKLV 1191
Query: 709 EPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKE-GLAK 767
P ++RR K + L LP K V + +L+ +K +Y+ +++ +S ++ GL+
Sbjct: 1192 LPFVMRRLKT------EVLKELPEKNVQDYECELTEDQKEIYRFVVDRCTSSQEDVGLSS 1245
Query: 768 GDLLKNYTNILVHILRLRQVCCHLDLLKKT 797
LV ++ LR++ H L+ T
Sbjct: 1246 ----------LVTLITLRKLTDHTKLVHDT 1265
Score = 66.2 bits (160), Expect = 3e-10
Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 2/131 (1%)
Query: 957 GEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDMKERTRILEQFHXXXXXXXX 1016
G + ++F Q+ + ++ L+S V DG + +R +++ +F+
Sbjct: 1320 GHRALIFCQWKTSAKLVSDALKSGEFGSVVSHLVLDGSVPAGDRMKMVNRFNEDKTIDVL 1379
Query: 1017 XXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSV 1076
GGVGLNLT A +D W+P + QAIDR HR+GQ + V V R I +V
Sbjct: 1380 ILTTH--VGGVGLNLTGADTVIFLDHDWNPMKDLQAIDRAHRLGQTRNVNVYRLITQGTV 1437
Query: 1077 EEKMLRIQERK 1087
EEK++ + + K
Sbjct: 1438 EEKVMSLAKFK 1448
>At2g02090 [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 763
Score = 70.9 bits (172), Expect = 1e-11
Identities = 48/153 (31%), Positives = 79/153 (51%), Gaps = 8/153 (5%)
Query: 938 STKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDM 997
S K + L L ++++ G ++++FSQ++S LDILE L V + DG +
Sbjct: 587 SAKCRTLAELLPSMKKS--GHRVLIFSQWTSMLDILEWTLDVI----GVTYRRLDGSTQV 640
Query: 998 KERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIH 1057
+R I++ F+ GG GLNLT A + D ++P ++ QA DR H
Sbjct: 641 TDRQTIVDTFNNDKSIFACLLSTRA--GGQGLNLTGADTVIIHDMDFNPQIDRQAEDRCH 698
Query: 1058 RIGQQQTVKVVRFIIDNSVEEKMLRIQERKRML 1090
RIGQ + V + R + ++V+E + I +RK +L
Sbjct: 699 RIGQTKPVTIFRLVTKSTVDENIYEIAKRKLVL 731
Score = 66.6 bits (161), Expect = 2e-10
Identities = 80/333 (24%), Positives = 144/333 (43%), Gaps = 65/333 (19%)
Query: 477 INGGILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQH 536
I G ILADEMGLGKTI A+ + + S++++ P H
Sbjct: 232 IEGAILADEMGLGKTIQAITYLT----------------------LLSRLNNDPGPH--- 266
Query: 537 KHDTYAYRTTLIVVPMSLLNQWQSEFEK-----ANKDLKKRCEIYYGNNIKDLRAYVLGP 591
L+V P S+L W+ E K Y + L G
Sbjct: 267 ----------LVVCPASVLENWERELRKWCPSFTVLQYHGAARAAYSRELNSLSK--AGK 314
Query: 592 NAP-SVIITTYGIIQ--SEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAV--IAL 646
P +V++ Y + + SE + L + +++DE H ++++++ K + +A
Sbjct: 315 PPPFNVLLVCYSLFERHSEQQKDDRKVLKRWRWSCVLMDEAHALKDKNSYRWKNLMSVAR 374
Query: 647 RSSRKWILTGTPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQAFDVI-- 704
++++ +LTGTP+ N L +L+SL++F+ + ++ N V +K A+ ++I
Sbjct: 375 NANQRLMLTGTPLQNDLHELWSLLEFMLPDIFTTEN-------VDLKKLLNAEDTELITR 427
Query: 705 -NAVLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLEDAENSVKE 763
++L P +LRR K+ DV + L PK VE + + ++ Y+ +E+ + +
Sbjct: 428 MKSILGPFILRRLKS--DV----MQQLVPKIQRVEYVLMERKQEDAYKEAIEEYRAASQA 481
Query: 764 GLAKGDLLKNYTNILVHILRLRQVCCHLDLLKK 796
L K L N L L RQ+ + +K
Sbjct: 482 RLVK--LSSKSLNSLAKALPKRQISNYFTQFRK 512
>HsM8922362 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 310
Score = 70.1 bits (170), Expect = 2e-11
Identities = 46/157 (29%), Positives = 76/157 (48%), Gaps = 8/157 (5%)
Query: 938 STKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDM 997
S K L R L ++++ G ++++FSQ +S LDIL + + DG +
Sbjct: 35 SGKFLILDRMLPELKKR--GHKVLLFSQMTSMLDIL----MDYCHLRDFNFSRLDGSMSY 88
Query: 998 KERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIH 1057
ER + + F+ GG+G+NLT A + D W+P + QA DR H
Sbjct: 89 SEREKNMHSFNTDPEVFIFLVSTRA--GGLGINLTAADTVIIYDSDWNPQSDLQAQDRCH 146
Query: 1058 RIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGDIV 1094
RIGQ + V V R + N++++K++ KR L ++
Sbjct: 147 RIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLI 183
>Hs14767157 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 348
Score = 70.1 bits (170), Expect = 2e-11
Identities = 46/157 (29%), Positives = 76/157 (48%), Gaps = 8/157 (5%)
Query: 938 STKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDM 997
S K L R L ++++ G ++++FSQ +S LDIL + + DG +
Sbjct: 108 SGKFLILDRMLPELKKR--GHKVLLFSQMTSMLDIL----MDYCHLRDFNFSRLDGSMSY 161
Query: 998 KERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIH 1057
ER + + F+ GG+G+NLT A + D W+P + QA DR H
Sbjct: 162 SEREKNMHSFNTDPEVFIFLVSTRA--GGLGINLTAADTVIIYDSDWNPQSDLQAQDRCH 219
Query: 1058 RIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGDIV 1094
RIGQ + V V R + N++++K++ KR L ++
Sbjct: 220 RIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLI 256
>CE17477 [R] KOG1016 Predicted DNA helicase DEAD-box superfamily
Length = 1274
Score = 70.1 bits (170), Expect = 2e-11
Identities = 50/173 (28%), Positives = 82/173 (46%), Gaps = 15/173 (8%)
Query: 952 QETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQV----------IIYKFDGRLDMKERT 1001
+ T GE+I++FSQ + LD+LE L+ R + + DG +R
Sbjct: 788 ESTQIGEKILIFSQNLTALDMLEEILKKRQIRGKDGPGQRWEKNRNYLRLDGTTSGADRE 847
Query: 1002 RILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQ 1061
+++ +F+ G +G+NL A+R ++D W+P + QA+ R++R GQ
Sbjct: 848 KLINRFNSEPGLSLFLISTRA--GSLGINLVSANRCIIIDACWNPCHDAQAVCRVYRYGQ 905
Query: 1062 QQTVKVVRFIIDNSVEEKMLRIQERKRMLGDIVEGD---EAERRQKRIEEIQM 1111
Q+ V R I+DNS+E + Q K L V D +A QK +E + M
Sbjct: 906 QKKTFVYRLIMDNSMERSIFNRQISKHGLQQRVVDDAQVDANISQKELETLLM 958
>CE03657 [R] KOG0383 Predicted helicase
Length = 1787
Score = 70.1 bits (170), Expect = 2e-11
Identities = 80/319 (25%), Positives = 151/319 (47%), Gaps = 42/319 (13%)
Query: 481 ILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHDT 540
ILADEMGLGKT+ +L + T E H TK P + + R ++
Sbjct: 638 ILADEMGLGKTVQSLTFLYTLM-KEGH------TKGPFLIAAPLSTIINWEREAELWCPD 690
Query: 541 YAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKDLRAYVLGPNAPSVIITT 600
+ Y T + S + + EF + ++ ++ +++L+ +VL +T+
Sbjct: 691 F-YVVTYVGDRESRMVIREHEFSFVDGAVRGGPKVSKIKTLENLKFHVL--------LTS 741
Query: 601 YGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWILTGTPII 660
Y I + S+ + + +++DE H ++N + K + + +LTGTP+
Sbjct: 742 YECINMDKAILSS-----IDWAALVVDEAHRLKNNQSTFFKNLREYNIQYRVLLTGTPLQ 796
Query: 661 NRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQAFDVINAVLEPVLLRRTKNMK 720
N L++LF L+ FL + ++ + + + F + + + ++ +L P +LRR K
Sbjct: 797 NNLEELFHLLNFLAPDRFNQLESF----TAEFSEISKEDQIEKLHNLLGPHMLRRLK--A 850
Query: 721 DVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLE---DAENSVKEGLAKGDLLKNYTNI 777
DV L +P K+ ++ +++LS+ +K+ Y+++L DA N VK G + L+ NI
Sbjct: 851 DV----LTGMPSKQELIVRVELSAMQKKYYKNILTRNFDALN-VKNGGTQMSLI----NI 901
Query: 778 LVHILRLRQVCCHLDLLKK 796
I+ L++ C H L K
Sbjct: 902 ---IMELKKCCNHPYLFMK 917
Score = 70.1 bits (170), Expect = 2e-11
Identities = 42/154 (27%), Positives = 76/154 (49%), Gaps = 10/154 (6%)
Query: 941 IKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDMKER 1000
++ +LR LK G ++++FSQ + LDILE + + DG + ++R
Sbjct: 945 LQKMLRKLKD-----GGHRVLIFSQMTMMLDILE----DFCDVEGYKYERIDGSITGQQR 995
Query: 1001 TRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIG 1060
+++++ GG+G+NL A + D W+P + QA R HR+G
Sbjct: 996 QDAIDRYNAPGAKQFVFLLSTRA-GGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLG 1054
Query: 1061 QQQTVKVVRFIIDNSVEEKMLRIQERKRMLGDIV 1094
Q+ V + RF+ SVEE++ + ++K +L +V
Sbjct: 1055 QKHKVMIYRFVTKGSVEERITSVAKKKMLLTHLV 1088
>7295362 [L] KOG0298 DEAD box-containing helicase-like transcription
factor/DNA repair protein
Length = 1270
Score = 69.7 bits (169), Expect = 2e-11
Identities = 64/231 (27%), Positives = 107/231 (45%), Gaps = 35/231 (15%)
Query: 858 CAICTTECIEPLSAVSITECLHTFCEPCLAEYIEFQQNKKLSINCPYCRMPISEANVLKL 917
C IC T+ + + V + C H C+ CL + + + + CP CR
Sbjct: 1037 CPICQTQ--DDVRYVMMV-CGHFVCQHCL-DSMRRKNGRAGVTKCPLCRQ---------- 1082
Query: 918 KEPIDAERGYELISFHSHFQ-----STKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDI 972
D+ + Y + +H STKI +++ + +I+ + E+IIVFSQ+ + L
Sbjct: 1083 ----DSPQLYYSVRPGAHKSIIGDFSTKISSVVELVLKIKGENEQEKIIVFSQWQAIL-- 1136
Query: 973 LEIELRSHLPRDQVIIYKFDGRLDMKERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLT 1032
IE+ L + + +F + K+ + F G GLNL
Sbjct: 1137 --IEIARALSLNGI---QFRNKCTNKD----FDDFKNPLSNVTCLLMPLSK-GSKGLNLI 1186
Query: 1033 CASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSVEEKMLRI 1083
A+ F+++P +PG E QAI RIHR GQ++ KV RFI++ ++EE +L +
Sbjct: 1187 EATHVFLVEPILNPGDERQAIGRIHRFGQKRPTKVHRFIVNETIEENILSL 1237
>CE17716 [R] KOG0383 Predicted helicase
Length = 1829
Score = 69.3 bits (168), Expect = 3e-11
Identities = 43/154 (27%), Positives = 76/154 (48%), Gaps = 10/154 (6%)
Query: 941 IKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDMKER 1000
++ +LR LK G ++++FSQ + LDI+E R + + DG + + R
Sbjct: 931 LQKMLRKLKD-----GGHRVLIFSQMTRMLDIMEDLCEYEGYRYE----RIDGSIMGQMR 981
Query: 1001 TRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIG 1060
+++++ GG+G+NL A + D W+P + QA R HR+G
Sbjct: 982 QDAIDRYNAPGAQQFIFLLSTRA-GGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLG 1040
Query: 1061 QQQTVKVVRFIIDNSVEEKMLRIQERKRMLGDIV 1094
Q+ V + RF+ SVEEK+ + ++K +L +V
Sbjct: 1041 QKHKVMIYRFVTKKSVEEKITSVAKKKMLLNHLV 1074
Score = 67.8 bits (164), Expect = 9e-11
Identities = 85/342 (24%), Positives = 148/342 (42%), Gaps = 88/342 (25%)
Query: 481 ILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHDT 540
ILADEMGLGKT+ +L + + E H K P
Sbjct: 624 ILADEMGLGKTVQSLTFLYSLM-KEGHCK-------------------GPF--------- 654
Query: 541 YAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKDLRAYVL----------- 589
LI P+S + W+ E E+ D Y G ++D R +
Sbjct: 655 ------LIAAPLSTIINWEREAEQWCPDFY--VVTYVG--LRDARVVLREHEFSFVEGAV 704
Query: 590 --GPNAPS----------VIITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRST 637
GP A V++T+Y I + + L ++ + +++DE H ++N +
Sbjct: 705 RSGPKASKMKTTENMKFHVLLTSYETINMD-----KTILSSIEWGALVVDEAHRLKNNQS 759
Query: 638 RTSKAVIALRSSRKWILTGTPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNY 697
K + + +LTGTP+ N L++LF L+ FL+ E ++ + + + F + +
Sbjct: 760 LFFKNLNEYTIHYRVLLTGTPLQNNLEELFHLLNFLSKERFNQLEAF----TAEFNEISK 815
Query: 698 AQAFDVINAVLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSMLE-- 755
+ ++ +L P +LRR K DV L +P K ++ +++LS+ +K+ Y+++L
Sbjct: 816 EDQIEKLHNLLGPHMLRRLK--ADV----LTGMPSKSELIVRVELSAMQKKWYKNILTRN 869
Query: 756 -DAENSVKEGLAKGDLLKNYTNILVHILRLRQVCCHLDLLKK 796
DA N VK G + L+ N+L + L++ C H L K
Sbjct: 870 FDALN-VKNGGTQMSLM----NVL---MELKKCCNHPYLFVK 903
>At4g31900 [R] KOG0383 Predicted helicase
Length = 1067
Score = 69.3 bits (168), Expect = 3e-11
Identities = 43/161 (26%), Positives = 81/161 (49%), Gaps = 7/161 (4%)
Query: 938 STKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDM 997
S K++ L + + +++E G ++++++QF L +LE + + DG++
Sbjct: 413 SGKLQLLDKMMVKLKEQ--GHRVLIYTQFQHTLYLLE----DYFTFKNWNYERIDGKISG 466
Query: 998 KERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIH 1057
ER +++F+ GG+G+NL A + D W+P + QA+ R+H
Sbjct: 467 PERQVRIDRFNAENSNRFCFLLSTRA-GGIGINLATADTVIIYDSDWNPHADLQAMARVH 525
Query: 1058 RIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGDIVEGDE 1098
R+GQ V + R I +VEE+M+ I + K +L +V G +
Sbjct: 526 RLGQTNKVMIYRLIHKGTVEERMMEITKNKMLLEHLVVGKQ 566
>At1g08600 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box superfamily
Length = 1447
Score = 69.3 bits (168), Expect = 3e-11
Identities = 48/167 (28%), Positives = 81/167 (47%), Gaps = 10/167 (5%)
Query: 957 GEQIIVFSQFSSFLDILEIELRSHLPRDQVI---------IYKFDGRLDMKERTRILEQF 1007
G++ +VFSQ LD++E+ L S +PR Y+ DG+ + ER +++++F
Sbjct: 1099 GDKALVFSQSIPTLDLIELYL-SRVPRHGKQGKFWKKGKDWYRIDGKTESSERQKLVDRF 1157
Query: 1008 HXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKV 1067
+ G +G+NL A+R ++D W+P + QAI R R GQ++ V
Sbjct: 1158 NEPDNKRVKCTLISTRAGSLGINLYAANRVIIVDGSWNPTYDLQAIFRAWRYGQKKPVFA 1217
Query: 1068 VRFIIDNSVEEKMLRIQERKRMLGDIVEGDEAERRQKRIEEIQMLFQ 1114
R + ++EEK+ + Q K L V + R EE+ LF+
Sbjct: 1218 YRLMARGTIEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFE 1264
>CE11450 [KL] KOG4439 RNA polymerase II transcription termination factor
TTF2/lodestar DEAD-box superfamily
Length = 518
Score = 68.2 bits (165), Expect = 7e-11
Identities = 38/123 (30%), Positives = 66/123 (52%), Gaps = 3/123 (2%)
Query: 993 GRLDMKERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQA 1052
G + +K+R ++ F+ GGVGLNL + M+D W+P +E QA
Sbjct: 387 GEVAIKDRQERVDSFNQEKGGAQDMLLSLTA-GGVGLNLIGGNHLIMVDLHWNPALEQQA 445
Query: 1053 IDRIHRIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGDIVEGDEAERRQKRI--EEIQ 1110
DRI+R+GQ++ V + R I+ ++E++++ +QE+K L V A R ++ +I+
Sbjct: 446 CDRIYRMGQKKEVHIHRLIVKETIEQRVMSLQEKKLALAASVLEGSATRGMNKLTNSDIR 505
Query: 1111 MLF 1113
LF
Sbjct: 506 TLF 508
Score = 64.7 bits (156), Expect = 8e-10
Identities = 50/196 (25%), Positives = 89/196 (44%), Gaps = 46/196 (23%)
Query: 478 NGGILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHK 537
+GGIL +MGLGKT+S ++LI H+K T+K + +
Sbjct: 164 SGGILGGDMGLGKTLSMISLI-------VHQKAARKTRKDAGDD---------------- 200
Query: 538 HDTYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGN----NIKDLRAYV----- 588
+ P SL++ W++E + K +Y+GN N KDL+ ++
Sbjct: 201 ----------AIAPESLVHHWEAEIARRLKQDLLSVLVYHGNRRHINPKDLKKHIELDYD 250
Query: 589 -LGPNAPSVIITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALR 647
+ P + +++ ++S L + + +ILDE H I+NR+ + S+A +
Sbjct: 251 LEDEHNPCSKLRPRVCPKAD---KNSSPLARIAWSYVILDEAHIIKNRNAQCSEAACKIS 307
Query: 648 SSRKWILTGTPIINRL 663
+ +W L+GTPI N +
Sbjct: 308 AFSRWCLSGTPIHNNM 323
>7301343 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box superfamily
Length = 1311
Score = 67.4 bits (163), Expect = 1e-10
Identities = 84/342 (24%), Positives = 141/342 (40%), Gaps = 75/342 (21%)
Query: 478 NGGILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHK 537
+G ILA MGLGKT+ + L T + +T++ + +
Sbjct: 483 SGCILAHCMGLGKTLQVVTLSHTL---------LVNTRRTGVDRV--------------- 518
Query: 538 HDTYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKR-CEIYYGNNIKD--LRAYVLGP--N 592
LI+ P+S +N W EF K + E+Y + KD R + L N
Sbjct: 519 ---------LIISPLSTVNNWAREFTSWMKFANRNDIEVYDISRYKDKPTRIFKLNEWFN 569
Query: 593 APSVIITTYGI-----------IQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSK 641
V I Y + ++ + L + ++ DEGH ++N T SK
Sbjct: 570 EGGVCILGYDMYRILANEKAKGLRKKQREQLMQALVDPGPDLVVCDEGHLLKNEKTSISK 629
Query: 642 AVIALRSSRKWILTGTPIINRLDDLFSLVQFL--NLEPWSHINYWKRYVSVPFEKGNYAQ 699
AV +R+ R+ +LTGTP+ N L + + ++QF+ NL ++ Y R+V+ P G Y
Sbjct: 630 AVTRMRTKRRIVLTGTPLQNNLREYYCMIQFVKPNL-LGTYKEYMNRFVN-PITNGQYTD 687
Query: 700 AFD-----------VINAVLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKR 748
+ + +++ +LE + RR ++ LPPK V LS +++
Sbjct: 688 STERDLRLMKHRSHILHKLLEGCIQRRDYSVL------APYLPPKHEYVVYTTLSELQQK 741
Query: 749 VY-QSMLEDAENSVKEGLAKGDLL----KNYTNILVHILRLR 785
+Y M E S + + KG L ++ I H + LR
Sbjct: 742 LYGYYMTTHREQSGGDVVGKGARLFQDFQDLRRIWTHPMNLR 783
Score = 64.7 bits (156), Expect = 8e-10
Identities = 57/215 (26%), Positives = 97/215 (44%), Gaps = 29/215 (13%)
Query: 919 EPIDAERGYELISFHSHFQSTKIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELR 978
+P ER EL + H S K+ LLR L+Q + G++++VFSQ LD++E L
Sbjct: 883 KPFVEER--ELNNVH---HSPKLLILLRLLQQCEAI--GDKLLVFSQSLQSLDVIEHFLS 935
Query: 979 SHLPRDQVIIYKFDG----------------RLD----MKERTRILEQFHXXXXXXXXXX 1018
L Y+F+G RLD +++R + +QF+
Sbjct: 936 --LVDSNTKNYEFEGDVGDFKGCWTSGKDYFRLDGSCSVEQREAMCKQFNNITNLRARLF 993
Query: 1019 XXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSVEE 1078
GG+G+NL A+R + D W+P + Q+I R++R GQ + + R I ++E+
Sbjct: 994 LISTRAGGLGINLVAANRVVIFDVSWNPSHDTQSIFRVYRFGQIKPCYIYRLIAMGTMEQ 1053
Query: 1079 KMLRIQERKRMLGDIVEGDEAERRQKRIEEIQMLF 1113
K+ Q K+ V ++ R ++ L+
Sbjct: 1054 KVYERQVAKQATAKRVIDEQQISRHYNQTDLMELY 1088
>HsM14149926 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 757
Score = 65.9 bits (159), Expect = 3e-10
Identities = 47/142 (33%), Positives = 69/142 (48%), Gaps = 10/142 (7%)
Query: 957 GEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDMKERTRILEQFHXXXXXXXX 1016
G ++++FSQ LDILE +L + + + DGR+ R +++F
Sbjct: 22 GHKVLIFSQMVRCLDILE----DYLIQRRYTYERIDGRVRGNLRQAAIDRF-CKPDSDRF 76
Query: 1017 XXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSV 1076
GG+G+NLT A + D W+P + QA R HRIGQ + VKV R I NS
Sbjct: 77 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSY 136
Query: 1077 EEKM-----LRIQERKRMLGDI 1093
E +M L++ K +L DI
Sbjct: 137 EREMFDKASLKLGLDKAVLQDI 158
>SPAC3G6.12 [L] KOG0388 SNF2 family DNA-dependent ATPase
Length = 1063
Score = 64.3 bits (155), Expect = 1e-09
Identities = 61/237 (25%), Positives = 110/237 (45%), Gaps = 57/237 (24%)
Query: 480 GILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHD 539
GILADEMGLGKT+ +++++ A E H
Sbjct: 863 GILADEMGLGKTVQSISVM--AYLAETHN------------------------------- 889
Query: 540 TYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGN--NIKDLRAY------VLGP 591
+ L++ P S L+ WQ E + LK C Y+G+ + K LR +
Sbjct: 890 --IWGPFLVIAPASTLHNWQQEITRFVPKLK--CIPYWGSTKDRKILRKFWCRKNMTYDE 945
Query: 592 NAP-SVIITTYGII--QSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRS 648
N+P V++T+Y ++ ++Y ++ V + +ILDE I++ S+ K+++A +
Sbjct: 946 NSPFHVVVTSYQLVVLDAQYFQS-------VKWQYMILDEAQAIKSSSSSRWKSLLAFKC 998
Query: 649 SRKWILTGTPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEKGNYAQAFDVIN 705
+ +LTGTPI N + +L++L+ F+ + N + + S E ++AQ+ +N
Sbjct: 999 RNRLLLTGTPIQNTMQELWALLHFIMPSLFDSHNEFSEWFSKDIE--SHAQSNTQLN 1053
>Hs20538502 [R] KOG1016 Predicted DNA helicase DEAD-box superfamily
Length = 1359
Score = 63.5 bits (153), Expect = 2e-09
Identities = 46/168 (27%), Positives = 80/168 (47%), Gaps = 15/168 (8%)
Query: 944 LLRHLKQIQETSPGEQIIVFSQFSSFLDILEIEL-RSHLPRD-------------QVIIY 989
LL HL + + G++I+VFSQ S L ++E L + +P + +
Sbjct: 617 LLFHLIE-ESVKLGDKILVFSQSLSTLALIEEFLGKREVPCPPGTEGQGAQKWVRNISYF 675
Query: 990 KFDGRLDMKERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGME 1049
+ DG ER R++ QF+ G +G+NL A+R + D W+P +
Sbjct: 676 RLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHD 735
Query: 1050 DQAIDRIHRIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGDIVEGD 1097
QA+ R++R GQ++ + R + D ++E+K+ Q K+ + D V D
Sbjct: 736 AQAVCRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVDD 783
>7296236 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 2237
Score = 63.5 bits (153), Expect = 2e-09
Identities = 58/220 (26%), Positives = 93/220 (41%), Gaps = 73/220 (33%)
Query: 481 ILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRHSQHKHDT 540
ILADEMGLGKTI +L + H
Sbjct: 2044 ILADEMGLGKTIQSLTFV---------------------------------------HSV 2064
Query: 541 YAYRTT---LIVVPMSLLNQWQSEFEK-------------ANKDLKKRCEIYY----GNN 580
Y Y L++ P+S + WQ EFE +K + + E YY G
Sbjct: 2065 YEYGIRGPFLVIAPLSTIPNWQREFEGWTDMNVVVYHGSVTSKQMIQDYEYYYKTESGKV 2124
Query: 581 IKDLRAYVLGPNAPSVIITTYGIIQSEYGRTSTSGLFNVVFFRI-ILDEGHTIRNRSTRT 639
+K+ P +V+ITT+ +I ++Y FN +R+ ++DE H ++NR+ +
Sbjct: 2125 LKE-------PIKFNVLITTFEMIVTDYMDLKA---FN---WRLCVIDEAHRLKNRNCKL 2171
Query: 640 SKAVIALRSSRKWILTGTPIINRLDDLFSLVQFLNLEPWS 679
+ + L + +L+GTP+ N + +LFSL+ FL +S
Sbjct: 2172 LEGLRQLNLEHRVLLSGTPLQNNISELFSLLNFLEPSQFS 2211
>SPCC1620.14c [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 430
Score = 59.3 bits (142), Expect = 3e-08
Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 1025 GGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSVEEKML-RI 1083
GG+GLNL A + D W+P + QA DR HRIGQ + V+++R I + S+EE +L R
Sbjct: 16 GGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQTKEVRILRLITEKSIEENILSRA 75
Query: 1084 QERKRMLGDIVEGDEAERR 1102
Q + + G +++ + + +
Sbjct: 76 QYKLDLDGKVIQAGKFDNK 94
>CE27689 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 689
Score = 58.5 bits (140), Expect = 6e-08
Identities = 43/174 (24%), Positives = 80/174 (45%), Gaps = 10/174 (5%)
Query: 924 ERGYE-LISFHSHFQSTKIKALLRHLKQ--IQETSPGEQIIVFSQFSSFLDILEIELRSH 980
ER +E L+ F+S K A+ H+ + +P ++++F+ LD +++E+
Sbjct: 456 ERKHESLLEFYSLTGIVKAAAVCEHILENYFYPDAPPRKVLIFAHHQIVLDTIQVEVNKR 515
Query: 981 LPRDQVIIYKFDGRLDMKERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMM 1040
++ + DG+ RT + + F GVG+ LT AS
Sbjct: 516 ----KLGSIRIDGKTPSHRRTALCDSFQTDDNIRVAVLSITAA--GVGITLTAASVVVFA 569
Query: 1041 DPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSVEEKMLR-IQERKRMLGDI 1093
+ ++PG QA DR HR+GQ+ +V V I + ++ M +Q++ +LG +
Sbjct: 570 EIHFNPGYLVQAEDRAHRVGQKDSVFVQYLIAKKTADDVMWNMVQQKLDVLGQV 623
>CE27688 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 687
Score = 58.5 bits (140), Expect = 6e-08
Identities = 43/174 (24%), Positives = 80/174 (45%), Gaps = 10/174 (5%)
Query: 924 ERGYE-LISFHSHFQSTKIKALLRHLKQ--IQETSPGEQIIVFSQFSSFLDILEIELRSH 980
ER +E L+ F+S K A+ H+ + +P ++++F+ LD +++E+
Sbjct: 454 ERKHESLLEFYSLTGIVKAAAVCEHILENYFYPDAPPRKVLIFAHHQIVLDTIQVEVNKR 513
Query: 981 LPRDQVIIYKFDGRLDMKERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMM 1040
++ + DG+ RT + + F GVG+ LT AS
Sbjct: 514 ----KLGSIRIDGKTPSHRRTALCDSFQTDDNIRVAVLSITAA--GVGITLTAASVVVFA 567
Query: 1041 DPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSVEEKMLR-IQERKRMLGDI 1093
+ ++PG QA DR HR+GQ+ +V V I + ++ M +Q++ +LG +
Sbjct: 568 EIHFNPGYLVQAEDRAHRVGQKDSVFVQYLIAKKTADDVMWNMVQQKLDVLGQV 621
>At1g05480 [L] KOG0390 DNA repair protein SNF2 family
Length = 588
Score = 58.2 bits (139), Expect = 7e-08
Identities = 52/210 (24%), Positives = 96/210 (44%), Gaps = 15/210 (7%)
Query: 892 FQQNKKLSINCPY----CRMPISEANVLKLKEPIDAERGYELISFHSHFQSTKIKALLRH 947
F+ KLS+ + R ISE L + E + A+ + + QS K + L+
Sbjct: 329 FETEHKLSLVSVHPSLVSRCKISEKERLSIDEALLAQLKKVRLDPN---QSVKTRFLMEF 385
Query: 948 LKQIQETSPGEQIIVFSQFSSFLDILEIELRSHL---PRDQVIIYKFDGRLDMKERTRIL 1004
++ + E+++VFSQ+ L ++ L S P ++V+ G+L+ K+R ++
Sbjct: 386 VELCEVIK--EKVLVFSQYIDPLKLIMKHLVSRFKWNPGEEVLY--MHGKLEQKQRQTLI 441
Query: 1005 EQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQT 1064
+F+ G++L ASR ++D W+P +E QAI R +RIGQ++
Sbjct: 442 NEFNDPKSKAKVFLASTKACSE-GISLVGASRVILLDVVWNPAVERQAISRAYRIGQKRI 500
Query: 1065 VKVVRFIIDNSVEEKMLRIQERKRMLGDIV 1094
V + + E Q +K + ++V
Sbjct: 501 VYTYHLVAKGTPEGPKYCKQAQKDRISELV 530
>At1g48310 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 675
Score = 57.4 bits (137), Expect = 1e-07
Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 8/148 (5%)
Query: 940 KIKALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDMKE 999
KI A+L +L+ + E G + +VF+ S L+ EL L + +V + DG
Sbjct: 507 KIPAVLDYLENVIEA--GCKFLVFAHHQSMLE----ELHQFLKKKKVGCIRIDGSTPASS 560
Query: 1000 RTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRI 1059
R ++ F GVG+ LT AS + W+PG QA DR HRI
Sbjct: 561 RQALVSDFQDKDEIKAAVLSIRAA--GVGITLTAASTVIFAELSWTPGDLIQAEDRAHRI 618
Query: 1060 GQQQTVKVVRFIIDNSVEEKMLRIQERK 1087
GQ +V + + +++V++ + + + K
Sbjct: 619 GQVSSVNIHYLLANDTVDDIIWDVVQSK 646
>Hs21071060 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 954
Score = 57.0 bits (136), Expect = 2e-07
Identities = 44/182 (24%), Positives = 80/182 (43%), Gaps = 8/182 (4%)
Query: 912 ANVLKLKEPIDAERGYELISFHSHFQSTKIKALLRHLKQIQETSPGEQIIVFSQFSSFLD 971
A + K+ ++ LI F + KI +++ ++ + E S E+ +VF+ LD
Sbjct: 681 AKEMTTKDKTKQQQKDALILFFNRTAEAKIPSVIEYILDLLE-SGREKFLVFAHHKVVLD 739
Query: 972 ILEIELRSHLPRDQVIIYKFDGRLDMKERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNL 1031
+ EL R V + DG ER + +QF +GL
Sbjct: 740 AITQELE----RKHVQHIRIDGSTSSAEREDLCQQFQLSERHAVAVLSITAAN--MGLTF 793
Query: 1032 TCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSVEEKML-RIQERKRML 1090
+ A + +W+PG+ QA DR+HRIGQ +V + + + ++ + IQE+ ++L
Sbjct: 794 SSADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKVL 853
Query: 1091 GD 1092
+
Sbjct: 854 AE 855
>7300511 [L] KOG0388 SNF2 family DNA-dependent ATPase
Length = 1477
Score = 57.0 bits (136), Expect = 2e-07
Identities = 49/213 (23%), Positives = 108/213 (50%), Gaps = 25/213 (11%)
Query: 596 VIITTYGIIQSEYGRTSTSGLFNVVFFR-IILDEGHTIRNRSTRTSKAVIALRSSRKWIL 654
V+IT+Y ++ S+Y FN + ++ ++LDE I++ +++ K ++ + +L
Sbjct: 621 VVITSYQLVVSDYK------YFNRIKWQYMVLDEAQAIKSAASQRWKLLLGFSCRNRLLL 674
Query: 655 TGTPIINRLDDLFSLVQFLNLEPWSHINYWKRYVSVPFEK------GNYAQAFDVINAVL 708
+GTPI N + +L++L+ F+ + + + + S E G + ++ +L
Sbjct: 675 SGTPIQNSMAELWALLHFIMPTLFDSHDEFNEWFSKDIESHAENKTGIDEKQISRLHMIL 734
Query: 709 EPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSSEKRVYQSM-----LEDAENSVKE 763
+P +LRR K KDV+ + L K I+ L+ +K +Y+++ +ED + +
Sbjct: 735 KPFMLRRIK--KDVENE----LSDKIEIMVYCPLTIRQKLLYRALKQKIRIEDLLH-LTS 787
Query: 764 GLAKGDLLKNYTNILVHILRLRQVCCHLDLLKK 796
G + +N++ +++ R+VC H +L ++
Sbjct: 788 GSTTTSSSSSASNLMNLVMQFRKVCNHPELFER 820
>At3g24340 [L] KOG0390 DNA repair protein SNF2 family
Length = 1132
Score = 54.3 bits (129), Expect = 1e-06
Identities = 33/147 (22%), Positives = 72/147 (48%), Gaps = 6/147 (4%)
Query: 958 EQIIVFSQFSSFLDILEIELRSHLP---RDQVIIYKFDGRLDMKERTRILEQFHXXXXXX 1014
E+++V+SQ+ L ++ +L + +Q+++ G+++ ++R +++ F+
Sbjct: 944 EKVLVYSQYIDTLKLIMEQLIAECDWTEGEQILL--MHGKVEQRDRQHMIDNFNKPDSGS 1001
Query: 1015 XXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDN 1074
G++L ASR ++D W+P +E QAI R RIGQ++ V + ++ +
Sbjct: 1002 KVLLASTKACSE-GISLVGASRVVILDVVWNPSVESQAISRAFRIGQKRAVFIYHLMVKD 1060
Query: 1075 SVEEKMLRIQERKRMLGDIVEGDEAER 1101
+ E Q K + ++V E+
Sbjct: 1061 TSEWNKYCKQSEKHRISELVFSSTNEK 1087
>CE17314 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box superfamily
Length = 1359
Score = 53.9 bits (128), Expect = 1e-06
Identities = 29/123 (23%), Positives = 55/123 (44%)
Query: 992 DGRLDMKERTRILEQFHXXXXXXXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQ 1051
DG + +R + F+ G +G N+ A+R + D W+P + Q
Sbjct: 1020 DGSVQSGKRDAVQTSFNDPLNLRARLMLISTRAGSLGTNMVAANRVIIFDACWNPSHDTQ 1079
Query: 1052 AIDRIHRIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGDIVEGDEAERRQKRIEEIQM 1111
++ R++R GQ + V + RFI ++EE++ + Q K V + +R ++
Sbjct: 1080 SLFRVYRFGQTKPVYIYRFIAQGTMEERIYKRQVTKESTSMRVVDEAQIQRHYLGNDLTE 1139
Query: 1112 LFQ 1114
L+Q
Sbjct: 1140 LYQ 1142
>At3g42670 [L] KOG0390 DNA repair protein SNF2 family
Length = 1256
Score = 53.9 bits (128), Expect = 1e-06
Identities = 39/145 (26%), Positives = 67/145 (45%), Gaps = 8/145 (5%)
Query: 958 EQIIVF----SQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDMKERTRILEQFHXXXXX 1013
E+I++F + FL++ E R R+ + + G L++ ER R++++F
Sbjct: 1073 EKILIFCHNIAPIRLFLELFENVFRWKRGRELLTL---TGDLELFERGRVIDKFEEPGGQ 1129
Query: 1014 XXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIID 1073
G++LT ASR M+D W+P QAI R R GQQ+ V V + +
Sbjct: 1130 SRVLLASITACAE-GISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLSR 1188
Query: 1074 NSVEEKMLRIQERKRMLGDIVEGDE 1098
++EE R K + ++ +E
Sbjct: 1189 GTLEEDKYRRTTWKEWVSSMIFSEE 1213
>Hs17441908 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 215
Score = 51.6 bits (122), Expect = 7e-06
Identities = 40/131 (30%), Positives = 66/131 (49%), Gaps = 11/131 (8%)
Query: 540 TYAYRTT---LIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNNIKDLRAYVLGPNAPSV 596
TY Y+ LIVVP SL W E EK +L EI N D+R + V
Sbjct: 13 TYFYKEEWPLLIVVPSSLRYPWTEEIEKWIPELSPE-EINVIQNKTDVRRM----STSKV 67
Query: 597 IITTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIAL--RSSRKWIL 654
+ YG++ ++ +T L N F +I+DE H +++R+ S+ ++ + ++ R +L
Sbjct: 68 TVLGYGLLTAD-AKTLIDALNNQNFKVVIVDESHYMKSRNATRSRILLPIVQKARRAILL 126
Query: 655 TGTPIINRLDD 665
TGTP + R ++
Sbjct: 127 TGTPALGRPEE 137
>At5g20420 [L] KOG0390 DNA repair protein SNF2 family
Length = 1261
Score = 51.6 bits (122), Expect = 7e-06
Identities = 39/145 (26%), Positives = 65/145 (43%), Gaps = 8/145 (5%)
Query: 958 EQIIVF----SQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDMKERTRILEQFHXXXXX 1013
E+I++F + F ++ E R R+ I G L++ ER R++++F
Sbjct: 1079 EKILIFCHNIAPIRMFTELFENIFRWQRGRE---ILTLTGDLELFERGRVIDKFEEPGNP 1135
Query: 1014 XXXXXXXXXXTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIID 1073
G++LT ASR M+D W+P QAI R R GQQ+ V V + +
Sbjct: 1136 SRVLLASITACAE-GISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLSR 1194
Query: 1074 NSVEEKMLRIQERKRMLGDIVEGDE 1098
++EE R K + ++ +E
Sbjct: 1195 GTLEEDKYRRTTWKEWVSCMIFSEE 1219
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.318 0.135 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,406,240
Number of Sequences: 60738
Number of extensions: 2497040
Number of successful extensions: 8521
Number of sequences better than 1.0e-05: 149
Number of HSP's better than 0.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 7629
Number of HSP's gapped (non-prelim): 551
length of query: 1114
length of database: 30,389,216
effective HSP length: 117
effective length of query: 997
effective length of database: 23,282,870
effective search space: 23213021390
effective search space used: 23213021390
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)