ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI4733 good J KOG0400 Translation, ribosomal structure and biogenesis 40S ribosomal protein S13
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI4733 1649908 1649486 -141
(141 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YDR064w [J] KOG0400 40S ribosomal protein S13 264 3e-71
Hs4506685 [J] KOG0400 40S ribosomal protein S13 223 5e-59
SPAC6F6.07c [J] KOG0400 40S ribosomal protein S13 221 2e-58
7297390 [J] KOG0400 40S ribosomal protein S13 211 2e-55
At4g00100 [J] KOG0400 40S ribosomal protein S13 201 2e-52
At3g60770 [J] KOG0400 40S ribosomal protein S13 199 8e-52
CE04009 [J] KOG0400 40S ribosomal protein S13 198 2e-51
Hs17455695 [J] KOG0400 40S ribosomal protein S13 151 2e-37
ECU08g1060 [J] KOG0400 40S ribosomal protein S13 112 2e-25
Hs18552302 [J] KOG0400 40S ribosomal protein S13 70 1e-12
Hs20547089 [J] KOG0400 40S ribosomal protein S13 50 1e-06
>YDR064w [J] KOG0400 40S ribosomal protein S13
Length = 151
Score = 264 bits (674), Expect = 3e-71
Identities = 131/141 (92%), Positives = 139/141 (97%)
Query: 1 MSSSAIPYSRNAPAWFKGSSDGVVEQIIKYARKGLTPSQIGVLLRDAHGVTQAKVITGNK 60
+SSSAIPYSRNAPAWFK SS+ V+EQI+KYARKGLTPSQIGVLLRDAHGVTQA+VITGNK
Sbjct: 11 ISSSAIPYSRNAPAWFKLSSESVIEQIVKYARKGLTPSQIGVLLRDAHGVTQARVITGNK 70
Query: 61 ILRILKSNGLAPEIPEDLYFLIKKAVSVRKHLERNRKDKDAKFRLILIESRIHRLARYYR 120
I+RILKSNGLAPEIPEDLY+LIKKAVSVRKHLERNRKDKDAKFRLILIESRIHRLARYYR
Sbjct: 71 IMRILKSNGLAPEIPEDLYYLIKKAVSVRKHLERNRKDKDAKFRLILIESRIHRLARYYR 130
Query: 121 TVSVLPPNWKYESATASALVN 141
TV+VLPPNWKYESATASALVN
Sbjct: 131 TVAVLPPNWKYESATASALVN 151
>Hs4506685 [J] KOG0400 40S ribosomal protein S13
Length = 151
Score = 223 bits (569), Expect = 5e-59
Identities = 109/140 (77%), Positives = 123/140 (87%)
Query: 1 MSSSAIPYSRNAPAWFKGSSDGVVEQIIKYARKGLTPSQIGVLLRDAHGVTQAKVITGNK 60
+S SA+PY R+ P W K +SD V EQI K A+KGLTPSQIGV+LRD+HGV Q + +TGNK
Sbjct: 11 LSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNK 70
Query: 61 ILRILKSNGLAPEIPEDLYFLIKKAVSVRKHLERNRKDKDAKFRLILIESRIHRLARYYR 120
ILRILKS GLAP++PEDLY LIKKAV+VRKHLERNRKDKDAKFRLILIESRIHRLARYY+
Sbjct: 71 ILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYK 130
Query: 121 TVSVLPPNWKYESATASALV 140
T VLPPNWKYES+TASALV
Sbjct: 131 TKRVLPPNWKYESSTASALV 150
>SPAC6F6.07c [J] KOG0400 40S ribosomal protein S13
Length = 151
Score = 221 bits (563), Expect = 2e-58
Identities = 106/140 (75%), Positives = 124/140 (87%)
Query: 1 MSSSAIPYSRNAPAWFKGSSDGVVEQIIKYARKGLTPSQIGVLLRDAHGVTQAKVITGNK 60
++SSA+PY R+ PAW K +D VVEQI+K+++KG++PSQIGV LRD+HG+ Q + ITG K
Sbjct: 11 IASSALPYVRSPPAWCKADADSVVEQILKFSKKGMSPSQIGVTLRDSHGIPQVRFITGQK 70
Query: 61 ILRILKSNGLAPEIPEDLYFLIKKAVSVRKHLERNRKDKDAKFRLILIESRIHRLARYYR 120
I+RILK+NGLAPE+PEDLY LIKKAVSVRKHLERNRKDKD+KFRLILIESRIHRLARYYR
Sbjct: 71 IMRILKANGLAPELPEDLYNLIKKAVSVRKHLERNRKDKDSKFRLILIESRIHRLARYYR 130
Query: 121 TVSVLPPNWKYESATASALV 140
V LPP WKYESATASALV
Sbjct: 131 KVGALPPTWKYESATASALV 150
>7297390 [J] KOG0400 40S ribosomal protein S13
Length = 151
Score = 211 bits (538), Expect = 2e-55
Identities = 100/140 (71%), Positives = 120/140 (85%)
Query: 1 MSSSAIPYSRNAPAWFKGSSDGVVEQIIKYARKGLTPSQIGVLLRDAHGVTQAKVITGNK 60
+S SA+PY R P+W K ++D V EQI K +KGLTPS+IG++LRD+HGV Q + + GNK
Sbjct: 11 ISQSALPYRRTVPSWLKLNADDVKEQIKKLGKKGLTPSKIGIILRDSHGVAQVRFVNGNK 70
Query: 61 ILRILKSNGLAPEIPEDLYFLIKKAVSVRKHLERNRKDKDAKFRLILIESRIHRLARYYR 120
ILRI+KS GL P+IPEDLY +IKKAV++RKHLERNRKDKD KFRLIL+ESRIHRLARYY+
Sbjct: 71 ILRIMKSVGLKPDIPEDLYHMIKKAVAIRKHLERNRKDKDGKFRLILVESRIHRLARYYK 130
Query: 121 TVSVLPPNWKYESATASALV 140
T SVLPPNWKYES+TASALV
Sbjct: 131 TKSVLPPNWKYESSTASALV 150
>At4g00100 [J] KOG0400 40S ribosomal protein S13
Length = 150
Score = 201 bits (512), Expect = 2e-52
Identities = 98/140 (70%), Positives = 119/140 (85%), Gaps = 1/140 (0%)
Query: 1 MSSSAIPYSRNAPAWFKGSSDGVVEQIIKYARKGLTPSQIGVLLRDAHGVTQAKVITGNK 60
+S+SA+PY R++P+W K +S V E I K+A+KGLTPSQIGV+LRD+HG+ Q K +TG+K
Sbjct: 11 ISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSK 70
Query: 61 ILRILKSNGLAPEIPEDLYFLIKKAVSVRKHLERNRKDKDAKFRLILIESRIHRLARYYR 120
ILRILK++GLAPEIPEDLY LIKKAV++RKHLERNRKDKD+KFRLIL+ESRIHRLARYY+
Sbjct: 71 ILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYK 130
Query: 121 TVSVLPPNWKYESATASALV 140
LPP W ES TAS LV
Sbjct: 131 KTKKLPPVWN-ESTTASTLV 149
>At3g60770 [J] KOG0400 40S ribosomal protein S13
Length = 150
Score = 199 bits (507), Expect = 8e-52
Identities = 97/140 (69%), Positives = 118/140 (84%), Gaps = 1/140 (0%)
Query: 1 MSSSAIPYSRNAPAWFKGSSDGVVEQIIKYARKGLTPSQIGVLLRDAHGVTQAKVITGNK 60
+S+SA+PY R++P+W K + V E I K+A+KGLTPSQIGV+LRD+HG+ Q K +TG+K
Sbjct: 11 ISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSK 70
Query: 61 ILRILKSNGLAPEIPEDLYFLIKKAVSVRKHLERNRKDKDAKFRLILIESRIHRLARYYR 120
ILRILK++GLAPEIPEDLY LIKKAV++RKHLERNRKDKD+KFRLIL+ESRIHRLARYY+
Sbjct: 71 ILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYK 130
Query: 121 TVSVLPPNWKYESATASALV 140
LPP W ES TAS LV
Sbjct: 131 KTKKLPPVWN-ESTTASTLV 149
>CE04009 [J] KOG0400 40S ribosomal protein S13
Length = 151
Score = 198 bits (504), Expect = 2e-51
Identities = 93/141 (65%), Positives = 119/141 (83%)
Query: 1 MSSSAIPYSRNAPAWFKGSSDGVVEQIIKYARKGLTPSQIGVLLRDAHGVTQAKVITGNK 60
M+ SAIPY R+ P+W K +++ V +QI+K A+KGL PSQIGV+LRD+HGV Q + + GNK
Sbjct: 11 MAKSAIPYRRSVPSWQKMTAEEVQDQIVKMAKKGLRPSQIGVILRDSHGVGQVRRLAGNK 70
Query: 61 ILRILKSNGLAPEIPEDLYFLIKKAVSVRKHLERNRKDKDAKFRLILIESRIHRLARYYR 120
I RILKS G+APE+PEDLY L+KKAV++RKHLER+RKD D+K+RLIL+ESRIHRLARYY+
Sbjct: 71 IFRILKSKGMAPELPEDLYHLVKKAVAIRKHLERSRKDIDSKYRLILVESRIHRLARYYK 130
Query: 121 TVSVLPPNWKYESATASALVN 141
T LPP WKYES TA++LV+
Sbjct: 131 TKRQLPPTWKYESGTAASLVS 151
>Hs17455695 [J] KOG0400 40S ribosomal protein S13
Length = 232
Score = 151 bits (382), Expect = 2e-37
Identities = 79/127 (62%), Positives = 91/127 (71%), Gaps = 20/127 (15%)
Query: 11 NAPAWFKGSSDGVVEQIIKYARKGLTPSQIGVLLRDAHGVTQAKVITGNKILRILKSNGL 70
+ P W K +SD V EQI K +KGLTP QIG+ RILKS GL
Sbjct: 114 SVPTWLKLTSDNVKEQIYKLTKKGLTPPQIGI--------------------RILKSKGL 153
Query: 71 APEIPEDLYFLIKKAVSVRKHLERNRKDKDAKFRLILIESRIHRLARYYRTVSVLPPNWK 130
AP++PEDLY LIKKAV+V+KHLER+RKDKDAKF LILIESRIHRLARYY+T VLPP+WK
Sbjct: 154 APDLPEDLYHLIKKAVAVQKHLERSRKDKDAKFLLILIESRIHRLARYYKTKRVLPPSWK 213
Query: 131 YESATAS 137
YE +TAS
Sbjct: 214 YEPSTAS 220
>ECU08g1060 [J] KOG0400 40S ribosomal protein S13
Length = 148
Score = 112 bits (280), Expect = 2e-25
Identities = 54/129 (41%), Positives = 77/129 (58%)
Query: 2 SSSAIPYSRNAPAWFKGSSDGVVEQIIKYARKGLTPSQIGVLLRDAHGVTQAKVITGNKI 61
S S PY+ P W S D + +I+ KG+ IG LRD +G+ +A + G I
Sbjct: 12 SGSVKPYATAFPTWLTKSVDEIKSDVIQMGNKGVPAPDIGTRLRDEYGIGKASDVLGESI 71
Query: 62 LRILKSNGLAPEIPEDLYFLIKKAVSVRKHLERNRKDKDAKFRLILIESRIHRLARYYRT 121
R L+ NG+ P+IP DL L+ +A ++R HL RKD AK+RLIL+ SR++R+ARYY+
Sbjct: 72 TRFLQRNGVVPKIPHDLESLVHRANTLRSHLNIYRKDNSAKYRLILVSSRMYRVARYYKR 131
Query: 122 VSVLPPNWK 130
+P NWK
Sbjct: 132 KMRIPGNWK 140
>Hs18552302 [J] KOG0400 40S ribosomal protein S13
Length = 92
Score = 69.7 bits (169), Expect = 1e-12
Identities = 49/140 (35%), Positives = 60/140 (42%), Gaps = 59/140 (42%)
Query: 1 MSSSAIPYSRNAPAWFKGSSDGVVEQIIKYARKGLTPSQIGVLLRDAHGVTQAKVITGNK 60
+S SA+P P W K +SD + EQ K +KG N
Sbjct: 11 LSQSALPCHCKVPTWLKLTSDDMKEQTYKLTKKG------------------------NT 46
Query: 61 ILRILKSNGLAPEIPEDLYFLIKKAVSVRKHLERNRKDKDAKFRLILIESRIHRLARYYR 120
ILRILKS LAP++PEDLY LIK+A
Sbjct: 47 ILRILKSKRLAPDLPEDLYCLIKQA----------------------------------- 71
Query: 121 TVSVLPPNWKYESATASALV 140
T +LPPNWK+ES+TASALV
Sbjct: 72 TKQILPPNWKHESSTASALV 91
>Hs20547089 [J] KOG0400 40S ribosomal protein S13
Length = 97
Score = 49.7 bits (117), Expect = 1e-06
Identities = 24/44 (54%), Positives = 29/44 (65%)
Query: 5 AIPYSRNAPAWFKGSSDGVVEQIIKYARKGLTPSQIGVLLRDAH 48
A+PY P K D + EQI K A+KGLTPSQ+ V+LRDAH
Sbjct: 47 ALPYRCRIPTQLKLIPDDMKEQIYKLAKKGLTPSQVSVILRDAH 90
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.319 0.134 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,826,978
Number of Sequences: 60738
Number of extensions: 291377
Number of successful extensions: 840
Number of sequences better than 1.0e-05: 11
Number of HSP's better than 0.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 827
Number of HSP's gapped (non-prelim): 12
length of query: 141
length of database: 30,389,216
effective HSP length: 95
effective length of query: 46
effective length of database: 24,619,106
effective search space: 1132478876
effective search space used: 1132478876
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)