ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactVI4792.1   suspect: Pn  O     KOG1863   Posttranslational modification, protein turnover, chaperones   Ubiquitin carboxyl-terminal hydrolase

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactVI4792.1 1666444  1667352 303  
         (303 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Hs8394519 [O] KOG1863 Ubiquitin carboxyl-terminal hydrolase            32   0.87 
Hs14776897 [O] KOG1863 Ubiquitin carboxyl-terminal hydrolase           31   1.9  
Hs14150039 [D] KOG2398 Predicted proline-serine-threonine phosph...    30   5.6  
7293369 [A] KOG0343 RNA Helicase                                       29   9.6  

>Hs8394519 [O] KOG1863 Ubiquitin carboxyl-terminal hydrolase
          Length = 372

 Score = 32.3 bits (72), Expect = 0.87
 Identities = 17/46 (36%), Positives = 25/46 (53%), Gaps = 2/46 (4%)

Query: 29  NPYNGQVPCGNDISKCEVG--DLSGKYGNIDYSYYETEYLDPYLSL 72
           N  +G+  C ND + C V   D+   YGN +Y + ET YL  Y+ +
Sbjct: 325 NAVDGKWSCFNDSNICLVSWEDIQCTYGNPNYHWQETAYLLVYMKM 370


>Hs14776897 [O] KOG1863 Ubiquitin carboxyl-terminal hydrolase
          Length = 372

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 17/46 (36%), Positives = 25/46 (53%), Gaps = 2/46 (4%)

Query: 29  NPYNGQVPCGNDISKCEVG--DLSGKYGNIDYSYYETEYLDPYLSL 72
           N  +G+  C ND + C V   D+   YGN +Y + ET YL  Y+ +
Sbjct: 325 NAVDGKWFCFNDSNICLVSWEDIQCTYGNPNYHWQETAYLLVYMKM 370


>Hs14150039 [D] KOG2398 Predicted proline-serine-threonine
          phosphatase-interacting protein (PSTPIP)
          Length = 828

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 4/45 (8%)

Query: 27 HLNPYNGQVPC----GNDISKCEVGDLSGKYGNIDYSYYETEYLD 67
          H  PYN +  C    G  +SK   G  +G Y  ID+  Y +  LD
Sbjct: 38 HEPPYNSKAECAREGGKKVSKKSNGAPNGFYAEIDWERYNSPELD 82


>7293369 [A] KOG0343 RNA Helicase
          Length = 805

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 17/56 (30%), Positives = 28/56 (49%), Gaps = 2/56 (3%)

Query: 227 EKRVETSFTKKPHHTTSAALKEGYKEVKNETDTEWKTDDGHYN--GTETDHSTALN 280
           +K+      KK H      L++  +E K   D E + DD + +  G+E+DHS  L+
Sbjct: 675 DKQRFRELVKKRHKLQREKLRKKAEEAKGSDDEEEQQDDDNADDAGSESDHSVDLS 730


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.311    0.131    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,288,670
Number of Sequences: 60738
Number of extensions: 534303
Number of successful extensions: 1025
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1025
Number of HSP's gapped (non-prelim): 5
length of query: 303
length of database: 30,389,216
effective HSP length: 106
effective length of query: 197
effective length of database: 23,950,988
effective search space: 4718344636
effective search space used: 4718344636
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)