ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI4827 suspect: %id AJ KOG0123 RNA processing and modification Polyadenylate-binding protein (RRM superfamily)
r_klactVI4827 suspect: %id AJ KOG0123 Translation, ribosomal structure and biogenesis Polyadenylate-binding protein (RRM superfamily)
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI4827 1677731 1679854 708
(708 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
At1g49760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 77 7e-14
SPAC57A7.04c [AJ] KOG0123 Polyadenylate-binding protein (RRM sup... 75 3e-13
At1g22760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 72 4e-12
At2g36660 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 69 3e-11
YER165w [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 66 2e-10
At2g23350 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 66 2e-10
Hs4504715 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 64 1e-09
At4g34110 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 64 1e-09
At1g34140 [R] KOG0118 FOG: RRM domain 63 1e-09
Hs18201888 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 59 2e-08
YFR023w [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 58 4e-08
CE03230 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 58 4e-08
CE02193 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 58 4e-08
Hs17435151 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 58 6e-08
Hs4505575 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 57 1e-07
Hs13569958 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 56 2e-07
At1g45100 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 55 5e-07
Hs4503551 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 52 2e-06
At1g71770 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 52 4e-06
>At1g49760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 704
Score = 77.4 bits (189), Expect = 7e-14
Identities = 75/326 (23%), Positives = 141/326 (43%), Gaps = 47/326 (14%)
Query: 122 IFVASLAATLSDSELNASVTKEFAKYGKIVSVKVLRDPA--NRPYAFVQYASDDEALNAL 179
IF+ +L ++ L+ + F+ +G I+S KV DP+ ++ Y FVQY +D+ A A+
Sbjct: 135 IFIKNLDKSIDHKALHET----FSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAI 190
Query: 180 SQAQGTTLNNRNI-------RCERAKVNRTVFISSSFANPLEGKLTVEKVVDLMSKFGEL 232
+ G LN++ + + +R V ++ + L L+ E++ + +FG
Sbjct: 191 DKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVT 250
Query: 233 EQVVPSRDQMYKKNYYPSEVANSWFIQYAYRDDAIRAYLQMKLNYEYMVEWAQNVDVPPR 292
V RD K + F+ + DDA RA + EW
Sbjct: 251 TSCVIMRDGEGKSKGF-------GFVNFENSDDAARAVDALNGKTFDDKEW--------- 294
Query: 293 FNLLLSKA-KICEKERLERERFGKQPIFIDNKS----IFIGQLNFKVTKPLLLERFSKYG 347
+ KA K E+E +++F + +KS +++ L+ VT L E F+ +G
Sbjct: 295 ---FVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFG 351
Query: 348 EIDNCNLIHKQEQL-KCFAFIKYKTPASAAKALERENHSIFVEKILHVQIREVSNSRRSS 406
I +C ++ + + F+ + TP A +A+ N + V K L+V + + R++
Sbjct: 352 TITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQRKEDRKAR 411
Query: 407 IDSNKSFQ---------GPQLNLAPP 423
+ + S GP++ + PP
Sbjct: 412 LQAQFSQMRPVNMPPAVGPRMQMYPP 437
Score = 58.5 bits (140), Expect = 3e-08
Identities = 69/293 (23%), Positives = 132/293 (44%), Gaps = 37/293 (12%)
Query: 122 IFVASLAATLSDSELNASVTKEFAKYGKIVSVKVLRDPANRP---YAFVQYASDDEALNA 178
++V L AT++DS+L + F + G++VSV+V RD R Y +V YA+ +A A
Sbjct: 47 LYVGDLDATVTDSQL----FEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRA 102
Query: 179 LSQAQGTTLNNRNIR---CERAKVNRTVFISSSFANPLEGKLTVEKVVDLMSKFGELEQV 235
L++ LN R IR R R + + F L+ + + + + S FG +
Sbjct: 103 LNELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSC 162
Query: 236 VPSRDQMYKKNYYPSEVANSWFIQYAYRDDAIRAYLQMKLNYEYMVEWAQNVDVPPRFNL 295
+ D + Y F+QY D+A + + KLN + + + V V P +
Sbjct: 163 KVAVDPSGQSKGY-------GFVQYD-TDEAAQGAID-KLNGMLLND--KQVYVGPFVH- 210
Query: 296 LLSKAKICEKERLERERFGKQPIFIDNKSIFIGQLNFKVTKPLLLERFSKYGEIDNCNLI 355
+L+R+ G++ F ++++ L+ ++ L + F ++G +C ++
Sbjct: 211 -----------KLQRDPSGEKVKF---TNVYVKNLSESLSDEELNKVFGEFGVTTSCVIM 256
Query: 356 HKQE-QLKCFAFIKYKTPASAAKALERENHSIFVEKILHVQIREVSNSRRSSI 407
E + K F F+ ++ AA+A++ N F +K V + + R + +
Sbjct: 257 RDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETEL 309
>SPAC57A7.04c [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 653
Score = 75.1 bits (183), Expect = 3e-13
Identities = 87/360 (24%), Positives = 158/360 (43%), Gaps = 50/360 (13%)
Query: 122 IFVASLAATLSDSELNASVTKEFAKYGKIVSVKVLRDPAN--RPYAFVQYASDDEALNAL 179
+F+ +L + + L+ + F+ +GKI+S KV D + Y FV + S + A A+
Sbjct: 170 VFIKNLDPAIDNKALHDT----FSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAI 225
Query: 180 SQAQGTTLNNRNIRC-----ERAKVNRTVFISSSFANP----LEGKLTVEKVVDLMSKFG 230
G LN++ + R + ++ + ++F N L+ ++T ++ DL +FG
Sbjct: 226 EHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFG 285
Query: 231 ELEQVVPSRDQMYKKNYYPSEVANSWFIQYAYRDDAIRAYLQMKLNYEYMVEWAQNVDVP 290
E+ + +DQ K + F+ YA + A +A ++ + EY +
Sbjct: 286 EITSLSLVKDQNDKPRGFG-------FVNYANHECAQKAVDELN-DKEYKGK-------- 329
Query: 291 PRFNLLLSKA-KICEKERLERERFGKQPIFIDNK----SIFIGQLNFKVTKPLLLERFSK 345
L + +A K E+E R+R+ + + NK ++FI L +V L FS
Sbjct: 330 ---KLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSA 386
Query: 346 YGEIDNCNLI-HKQEQLKCFAFIKYKTPASAAKALERENHSIFVEKILHVQIREVSNSRR 404
+G I + ++ +Q + K F F+ Y TP A KA+ N + K L+V + + RR
Sbjct: 387 FGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRR 446
Query: 405 S----SIDSNKSFQGPQLNLAPPPLNIGRRASTGS--FSKYMYPLPNHL----QPNLPSH 454
S I + F+ Q A + + +TG + YP+P + P +P H
Sbjct: 447 SQLEAQIQARNQFRLQQQVAAAAGIPAVQYGATGPLIYGPGGYPIPAAVNGRGMPMVPGH 506
>At1g22760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 660
Score = 71.6 bits (174), Expect = 4e-12
Identities = 73/322 (22%), Positives = 133/322 (40%), Gaps = 41/322 (12%)
Query: 122 IFVASLAATLSDSELNASVTKEFAKYGKIVSVKVLRDPANRP--YAFVQYASDDEALNAL 179
IF+ +L A++ N ++ + F+ +G I+S KV D R Y FVQ+ ++ A A+
Sbjct: 138 IFIKNLDASID----NKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAI 193
Query: 180 SQAQGTTLNNRNI-------RCERAKVNRTVF--ISSSFANPLEGKLTVEKVVDLMSKFG 230
+ G +N++ + R ERA+ T ++ + L ++ +++ KFG
Sbjct: 194 DKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFG 253
Query: 231 ELEQVVPSRDQMYKKNYYPSEVANSWFIQYAYRDDAIRAYLQMKLNYEYMVEWAQNVDVP 290
+ V RDQ + F+ + + A A VE + +
Sbjct: 254 VISSAVVMRDQSGNSRCFG-------FVNFECTEAAASA-----------VEKMNGISLG 295
Query: 291 PRFNLLLSKAKICEKERLERERFGKQPIFIDNKS----IFIGQLNFKVTKPLLLERFSKY 346
+ K E+E R +F ++ I KS +++ L+ V L E FS+Y
Sbjct: 296 DDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEY 355
Query: 347 GEIDNCN-LIHKQEQLKCFAFIKYKTPASAAKALERENHSIFVEKILHVQIREVSNSRRS 405
G + + +++ Q + F F+ Y P A +AL N + K L++ + + RR+
Sbjct: 356 GNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRA 415
Query: 406 SID---SNKSFQGPQLNLAPPP 424
+ S GP PP
Sbjct: 416 HLQALFSQIRAPGPMSGFHHPP 437
>At2g36660 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 609
Score = 68.6 bits (166), Expect = 3e-11
Identities = 68/291 (23%), Positives = 129/291 (43%), Gaps = 34/291 (11%)
Query: 131 LSDSELNASVTKEFAKYGKIVSVKV--LRDPANRPYAFVQYASDDEALNALSQAQGTTLN 188
L +S NA + F K+G IVS KV L D +R Y FVQ+ +D A A+ T +
Sbjct: 119 LPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVA 178
Query: 189 NRNI-------RCERAKVNRTVFISSSFANPLEGKLTVEKVVDLMSKFGELEQVVPSRDQ 241
++ I + +R K ++ + L+ ++ + + + ++FG++ + ++D+
Sbjct: 179 DKEIYVGKFMKKTDRVKPEEK--YTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDE 236
Query: 242 MYKKNYYPSEVANSWFIQYAYRDDAIRAYLQMKLNYEYMVEWAQNVDVPPRFNLLLSKAK 301
Y F+ + +DA RA E + + K
Sbjct: 237 NRLCRGYA-------FVNFDNPEDARRA-----------AETVNGTKFGSKCLYVGRAQK 278
Query: 302 ICEKERLERERF----GKQPIFIDNKSIFIGQLNFKVTKPLLLERFSKYGEIDNCNLI-H 356
E+E+L RE+F +Q + +I++ +N VT+ L + FS+ G I + L+
Sbjct: 279 KAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCD 338
Query: 357 KQEQLKCFAFIKYKTPASAAKALERENHSIFVEKILHVQIREVSNSRRSSI 407
++ + K F F+ + TP A A++ + +F K L+V I + R+ +
Sbjct: 339 EKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRKMQL 389
>YER165w [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 577
Score = 65.9 bits (159), Expect = 2e-10
Identities = 69/287 (24%), Positives = 128/287 (44%), Gaps = 34/287 (11%)
Query: 137 NASVTKEFAKYGKIVSVKVLRDP--ANRPYAFVQYASDDEALNALSQAQGTTLNNRNI-- 192
N ++ F+ +G I+S K+ D ++ + FV + + A A+ G LN + I
Sbjct: 139 NKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYV 198
Query: 193 -----RCER-AKVNRT-VFISSSFANPLEGKLTVEKVVDLMSKFGELEQVVPSRDQMYKK 245
R ER +++ T ++ + + + T E+ +L +KFG + +D
Sbjct: 199 APHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDA---- 254
Query: 246 NYYPSEVANSWFIQYAYRDDAIRAYLQM---KLNYEYM-VEWAQNVDVPPRFNLLLSKAK 301
++ F+ Y +DA++A + +LN E + V AQ + R ++L
Sbjct: 255 ---DGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKN--ERMHVL----- 304
Query: 302 ICEKERLERERFGKQPIFIDNKSIFIGQLNFKVTKPLLLERFSKYGEIDNCNLIHKQE-Q 360
K++ E R K + ++F+ L+ V L E F+ YG I + ++ + +
Sbjct: 305 ---KKQYEAYRLEKMAKY-QGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGK 360
Query: 361 LKCFAFIKYKTPASAAKALERENHSIFVEKILHVQIREVSNSRRSSI 407
K F F+ + TP A KA+ +N I K L+V I + + RRS +
Sbjct: 361 SKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQL 407
>At2g23350 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 662
Score = 65.9 bits (159), Expect = 2e-10
Identities = 68/301 (22%), Positives = 123/301 (40%), Gaps = 34/301 (11%)
Query: 131 LSDSELNASVTKEFAKYGKIVSVKVLRDPA--NRPYAFVQYASDDEALNALSQAQGTTLN 188
L S N ++ + F+ G IVS KV D +R Y FVQ+ ++D A NA+ + G LN
Sbjct: 141 LDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLN 200
Query: 189 NRNI-------RCERAKVNRTVFISSSFANPLEGKLTVEKVVDLMSKFGELEQVVPSRDQ 241
++ I + ER + ++ + L T +++ ++G + V RD
Sbjct: 201 DKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDG 260
Query: 242 MYKKNYYPSEVANSWFIQYAYRDDAIRAYLQMKLNYEYMVEWAQNVDVPPRFNLLLSKAK 301
K + F+ + +DA RA + EW + KA+
Sbjct: 261 DGKSRCF-------GFVNFENPEDAARAVEALNGKKFDDKEW------------YVGKAQ 301
Query: 302 ICEKERLERERFGKQPIF-----IDNKSIFIGQLNFKVTKPLLLERFSKYGEIDNCNLIH 356
+ LE R +Q D ++++ L+ VT L E F+++G I +C ++
Sbjct: 302 KKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMR 361
Query: 357 KQE-QLKCFAFIKYKTPASAAKALERENHSIFVEKILHVQIREVSNSRRSSIDSNKSFQG 415
K F+ + + A++ L N + K L+V + + RR+ + + S
Sbjct: 362 DPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRKEERRAKLQAQFSQMR 421
Query: 416 P 416
P
Sbjct: 422 P 422
Score = 61.2 bits (147), Expect = 5e-09
Identities = 77/313 (24%), Positives = 132/313 (41%), Gaps = 46/313 (14%)
Query: 122 IFVASLAATLSDSELNASVTKEFAKYGKIVSVKVLRDPANRP---YAFVQYASDDEALNA 178
++V L ++DS+L F + ++VSV+V RD A Y +V Y++ D+A A
Sbjct: 48 LYVGDLDFNVTDSQLY----DYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKA 103
Query: 179 LSQAQGTTLNNRNIR---CERAKVNRTVFISSSFANPLEGKLTVEKVVDLMSKFGELEQV 235
+ + + LN + IR R R + + F L+ + + + + S G +
Sbjct: 104 MQKLNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSC 163
Query: 236 VPSRDQMYKKNYYPSEVANSWFIQYAYRDDAIRAYLQMKLNYEYMVEWAQNVDVPPRFNL 295
+ D M + Y F+Q+ D A A KLN + + + + + V P
Sbjct: 164 KVATDHMGQSRGY-------GFVQFDTEDSAKNAI--EKLNGKVLND--KQIFVGP---- 208
Query: 296 LLSKAKICEKERLERERFGKQPIFIDNKSIFIGQLNFKVTKPLLLERFSKYGEIDNCNLI 355
KE ERE + F ++++ L+ T L F +YG I + ++
Sbjct: 209 ------FLRKE--ERESAADKMKF---TNVYVKNLSEATTDDELKTTFGQYGSISSAVVM 257
Query: 356 HKQE-QLKCFAFIKYKTPASAAKALERENHSIFVEKILHV------QIREVSNSRR---S 405
+ + +CF F+ ++ P AA+A+E N F +K +V RE+ SRR
Sbjct: 258 RDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQG 317
Query: 406 SIDSNKSFQGPQL 418
S D F G L
Sbjct: 318 SSDGGNKFDGLNL 330
>Hs4504715 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 644
Score = 63.5 bits (153), Expect = 1e-09
Identities = 65/299 (21%), Positives = 132/299 (43%), Gaps = 34/299 (11%)
Query: 122 IFVASLAATLSDSELNASVTKEFAKYGKIVSVKVLRDP-ANRPYAFVQYASDDEALNALS 180
+F+ +L ++ N ++ F+ +G I+S KV+ D ++ YAFV + + + A A+
Sbjct: 101 VFIKNLDKSID----NKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIE 156
Query: 181 QAQGTTLNNRNIRCERAKVN---------RTVFISSSFANPLEGKLTVEKVVDLMSKFGE 231
+ G LN+R + R K + ++ + ++ E + +L S+FG+
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGK 216
Query: 232 LEQVVPSRDQMYKKNYYPSEVANSWFIQYAYRDDAIRAYLQM---KLNYEYMVEWAQNVD 288
V RD K + F+ Y +DA +A +M +++ + +
Sbjct: 217 TLSVKVMRDPNGKSKGF-------GFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKK 269
Query: 289 VPPRFNLLLSKAKICEKERLERERFGKQPIFIDNKSIFIGQLNFKVTKPLLLERFSKYGE 348
V + L K K E+L++ER + +++I L+ + L + FS +G
Sbjct: 270 VERQAEL---KRKF---EQLKQERISR----YQGVNLYIKNLDDTIDDEKLRKEFSPFGS 319
Query: 349 IDNCNLIHKQEQLKCFAFIKYKTPASAAKALERENHSIFVEKILHVQIREVSNSRRSSI 407
I + ++ + + K F F+ + +P A KA+ N I K L+V + + R++ +
Sbjct: 320 ITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHL 378
>At4g34110 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 629
Score = 63.5 bits (153), Expect = 1e-09
Identities = 76/346 (21%), Positives = 146/346 (41%), Gaps = 48/346 (13%)
Query: 122 IFVASLAATLSDSELNASVTKEFAKYGKIVSVKVLRDPA--NRPYAFVQYASDDEALNAL 179
IF+ +L ++ L+ + F+ +G IVS KV D + ++ Y FVQYA+++ A A+
Sbjct: 126 IFIKNLDESIDHKALHDT----FSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAI 181
Query: 180 SQAQGTTLNNRNI-------RCER-AKVNRTVFISSSFANPLEGKLTVEKVVDLMSKFGE 231
+ G LN++ + R ER + N+T F ++ + L T + + + ++G+
Sbjct: 182 EKLNGMLLNDKQVYVGPFLRRQERDSTANKTKF-TNVYVKNLAESTTDDDLKNAFGEYGK 240
Query: 232 LEQVVPSRDQMYKKNYYPSEVANSWFIQYAYRDDAIRAYLQMKLNYEYMVEWAQNVDVPP 291
+ V +D K + F+ + DDA RA + + EW
Sbjct: 241 ITSAVVMKDGEGKSKGF-------GFVNFENADDAARAVESLNGHKFDDKEW-------- 285
Query: 292 RFNLLLSKAKICEKERLERERFGKQ----PIFIDNKSIFIGQLNFKVTKPLLLERFSKYG 347
+ K E+E R R+ + + ++++ L+ ++ L E FS +G
Sbjct: 286 ---YVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFG 342
Query: 348 EIDNCNLIHKQE-QLKCFAFIKYKTPASAAKALERENHSIFVEKILHVQIREVSNSRRSS 406
+ + ++ K F+ + TP A +A+ + + + K L+V I + RR
Sbjct: 343 TVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVR 402
Query: 407 IDSNKS---------FQGPQLNLAPP-PLNIGRRASTGSFSKYMYP 442
+ + S GP++ + PP IG++ G M P
Sbjct: 403 LQAQFSQVRPVAMQPSVGPRMPVYPPGGPGIGQQMFYGQAPPAMIP 448
>At1g34140 [R] KOG0118 FOG: RRM domain
Length = 398
Score = 63.2 bits (152), Expect = 1e-09
Identities = 68/301 (22%), Positives = 126/301 (41%), Gaps = 38/301 (12%)
Query: 131 LSDSELNASVTKEFAKYGKIVSVKVLRDPA--NRPYAFVQYASDDEALNALSQAQGTTLN 188
L +S N + F+ +GK++S KV RD + ++ Y FVQ+ SD A + GT +
Sbjct: 38 LDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNFHNGTLIR 97
Query: 189 NRNIRC----ERAKVNRTVFISSSFANPLEGKLTVEKVVDLMSKFGELEQVVPSRDQMYK 244
N++I R + +++ ++ + L T + L +FGE+ V +D K
Sbjct: 98 NQHIHVCPFVSRGQWDKSRVFTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGK 157
Query: 245 KNYYPSEVANSWFIQYAYRDDAIRAYLQMKLNYEYMVEWAQNVDVPPRFNLLLSKAKICE 304
+ F+ + + A+ A K+N + E +V R K E
Sbjct: 158 SRRFG-------FVNFEKAEAAVTAI--EKMNGVVVDEKELHVGRAQR------KTNRTE 202
Query: 305 --KERLERERFGKQPIFIDNKSIFIGQLNFKVTKPLLLERFSKYGEIDNCNLIHKQEQLK 362
K + E E+ + ++++ L+ V L E FS++G I +CN K
Sbjct: 203 DLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSCN--------K 254
Query: 363 CFAFIKYKTPASAAKALERENHSIFVEKILHVQIREVSNSRRSSIDSNKSFQGPQLNLAP 422
F+++ T A+KA+ + N + K ++V + + + + + Q N P
Sbjct: 255 GVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLAQCKEQHKLHLQT-------QFNNPP 307
Query: 423 P 423
P
Sbjct: 308 P 308
>Hs18201888 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 382
Score = 59.3 bits (142), Expect = 2e-08
Identities = 72/288 (25%), Positives = 122/288 (42%), Gaps = 33/288 (11%)
Query: 122 IFVASLAATLSDSELNASVTKEFAKYGKIVSVKVLRDP-ANRPYAFVQYASDDEALNALS 180
IF+ +L ++ N ++ F+ +G I+S KV+ D ++ YA+V + S A A+
Sbjct: 108 IFIKNLDKSID----NRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIW 163
Query: 181 QAQGTTLNNRNIRC-------ERAKVNRT---VFISSSFANPLEGKLTVEKVVDLMSKFG 230
G LNNR + ERA RT ++ F + + EK+ +L ++G
Sbjct: 164 HMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYG 223
Query: 231 ELEQVVPSRDQMYKKNYYPSEVANSWFIQYAYRDDAIRAYLQMK-LNYEYMVEWAQNVDV 289
E V RD K + F++Y + A +A L + + + V +
Sbjct: 224 PTESVKVIRDASGKSKGFG-------FVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQ- 275
Query: 290 PPRFNLLLSKAKICEKERL-ERERFGKQPIFIDNKSIFIGQLNFKVTKPLLLERFSKYGE 348
+ L + E+ RL E+ R PI+I N L+ + L E FS +G
Sbjct: 276 -KKIERLAELRRRFERLRLKEKSRPPGVPIYIKN-------LDETINDEKLKEEFSSFGS 327
Query: 349 IDNCNLIHKQEQLKCFAFIKYKTPASAAKALERENHSIFVEKILHVQI 396
I ++ + Q K F + + + A KA++ N I K LHV +
Sbjct: 328 ISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTL 375
>YFR023w [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 611
Score = 58.2 bits (139), Expect = 4e-08
Identities = 73/309 (23%), Positives = 124/309 (39%), Gaps = 29/309 (9%)
Query: 122 IFVASLAATLSDSELNASVTKEFAKYGKIVSVKVLRDPANRP---YAFVQYASDDEALNA 178
+F+ L T+++ L F KY VS KV D + + ++ + +EA A
Sbjct: 93 LFIGDLHETVTEETLKGI----FKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKA 148
Query: 179 LSQAQGTTLNNRNIRCERAKVNRT--------VFISS-SFANPLEGKLTVEKVVDLMSKF 229
+ + T +N + IR + N T VF S+ NPL LT D S++
Sbjct: 149 MEELNYTKVNGKEIRIMPSLRNTTFRKNFGTNVFFSNLPLNNPL---LTTRVFYDTFSRY 205
Query: 230 GELEQVVPSRDQMYKKNYYPSEVANSWFIQYAYRDDAIRAYLQMKLNYEYMVEWAQNVDV 289
G++ + Y+ E I+ + ++++ V N +
Sbjct: 206 GKILSCKLDSRKDIGFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEVRSVPNFET 265
Query: 290 PPRFNLLLSKAKICEKERLERERFGK------QPIFIDNK-SIFIGQLNFKVTKPLLLER 342
L I EKE+ E+ K + I+ ++ SIFI L T+ +L
Sbjct: 266 QKS---RLDAETIIEKEQSLNEKHSKGNDKESKNIYSSSQNSIFIKNLPTITTRDDILNF 322
Query: 343 FSKYGEIDNCNLIHKQEQLKCFAFIKYKTPASAAKALERENHSIFVEKILHVQIREVSNS 402
FS+ G I + L + + +AF+ YK + + KA++R N+ F K L V +
Sbjct: 323 FSEVGPIKSIYLSNATKVKYLWAFVTYKNSSDSEKAIKRYNNFYFRGKKLLVTRAQDKEE 382
Query: 403 RRSSIDSNK 411
R I+S K
Sbjct: 383 RAKFIESQK 391
>CE03230 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 566
Score = 58.2 bits (139), Expect = 4e-08
Identities = 68/301 (22%), Positives = 127/301 (41%), Gaps = 30/301 (9%)
Query: 122 IFVASLAATLSDSELNASVTKEFAKYGKIVSVKVLRDPA--NRPYAFVQYASDDEALNAL 179
IF+ +L + N SV F+ +G I+S KV D ++ Y FV + ++ A A+
Sbjct: 147 IFIKNLDRVID----NKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAI 202
Query: 180 SQAQGTTLNNRNI-------RCERAKV--NRTVFISSSFANPLEGKLTVEKVVDLMSKFG 230
+ G L+++ + R +R K + ++ F L EK+ + SKFG
Sbjct: 203 EKVNGMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKFG 262
Query: 231 ELEQVVPSRDQMYKKNYYPSEVANSWFIQYAYRDDAIRAYLQMKLNYEYMVEWAQNVDVP 290
E+ V D K + F+ +A +D A +A KLN + + V
Sbjct: 263 EITSAVVMTDAQGKPKGFG-------FVAFADQDAAGQAV--EKLNDSILEGTDCKLSVC 313
Query: 291 PRFNLLLSKAKICEK-ERLERERFGKQPIFIDNKSIFIGQLNFKVTKPLLLERFSKYGEI 349
A++ K E L++ER + ++++ + + L + FS +G I
Sbjct: 314 RAQKKSERSAELKRKYEALKQERVQRY----QGVNLYVKNIEEDLNDDGLRDHFSSFGTI 369
Query: 350 DNCN-LIHKQEQLKCFAFIKYKTPASAAKALERENHSIFVEKILHVQIREVSNSRRSSID 408
+ ++ + + K F F+ ++ P A A+ N + K L+V + + RR+ +
Sbjct: 370 TSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALAQRKEDRRAQLA 429
Query: 409 S 409
S
Sbjct: 430 S 430
>CE02193 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 692
Score = 58.2 bits (139), Expect = 4e-08
Identities = 68/301 (22%), Positives = 127/301 (41%), Gaps = 30/301 (9%)
Query: 122 IFVASLAATLSDSELNASVTKEFAKYGKIVSVKVLRDPA--NRPYAFVQYASDDEALNAL 179
IF+ +L + N SV F+ +G I+S KV D ++ Y FV + ++ A A+
Sbjct: 147 IFIKNLDRVID----NKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAI 202
Query: 180 SQAQGTTLNNRNI-------RCERAKV--NRTVFISSSFANPLEGKLTVEKVVDLMSKFG 230
+ G L+++ + R +R K + ++ F L EK+ + SKFG
Sbjct: 203 EKVNGMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKFG 262
Query: 231 ELEQVVPSRDQMYKKNYYPSEVANSWFIQYAYRDDAIRAYLQMKLNYEYMVEWAQNVDVP 290
E+ V D K + F+ +A +D A +A KLN + + V
Sbjct: 263 EITSAVVMTDAQGKPKGFG-------FVAFADQDAAGQAV--EKLNDSILEGTDCKLSVC 313
Query: 291 PRFNLLLSKAKICEK-ERLERERFGKQPIFIDNKSIFIGQLNFKVTKPLLLERFSKYGEI 349
A++ K E L++ER + ++++ + + L + FS +G I
Sbjct: 314 RAQKKSERSAELKRKYEALKQERVQRY----QGVNLYVKNIEEDLNDDGLRDHFSSFGTI 369
Query: 350 DNCN-LIHKQEQLKCFAFIKYKTPASAAKALERENHSIFVEKILHVQIREVSNSRRSSID 408
+ ++ + + K F F+ ++ P A A+ N + K L+V + + RR+ +
Sbjct: 370 TSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALAQRKEDRRAQLA 429
Query: 409 S 409
S
Sbjct: 430 S 430
>Hs17435151 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 487
Score = 57.8 bits (138), Expect = 6e-08
Identities = 67/297 (22%), Positives = 121/297 (40%), Gaps = 48/297 (16%)
Query: 122 IFVASLAATLSDSELNASVTKEFAKYGKIVSVKVLR-DPANRPYAFVQYASDDEALNALS 180
+F+ +L ++ N ++ + F+ +GKI+S KV+ D ++ YAFV + + A A+
Sbjct: 217 VFIKNLDKSID----NKTLYEHFSAFGKILSSKVMSDDQGSKGYAFVHFQNQSAADRAIE 272
Query: 181 QAQGTTL----------NNRNIRCERAKVNRTVFISSSFANPLEGKLTVEKVVDLMSKFG 230
+ G L NR R + + F + N G + E++ D+ SK+G
Sbjct: 273 EMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKN-FGGDMDDERLKDVFSKYG 331
Query: 231 ELEQVVPSRDQMYKKNYYPSEVANSWFIQYAYRDDAIRAYLQMKLNYEYMVEWAQNVDVP 290
+ V D K + F+ + + A +A VE D+
Sbjct: 332 KTLSVKVMTDSSGKSKGF-------GFVSFDSHEAAKKA-----------VEEMNGRDIN 373
Query: 291 PRFNLLLSKAKICEK--------ERLERERF-GKQPIFIDNKSIFIGQLNFKVTKPLLLE 341
+ + K E+ E+L+RER G Q + ++I L+ + L
Sbjct: 374 GQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGV-----KLYIKNLDDTIDDEKLRN 428
Query: 342 RFSKYGEIDNCNLIHKQEQLKCFAFIKYKTPASAAKALERENHSIFVEKILHVQIRE 398
FS +G I ++ ++ Q K F I + +P A KA+ N I K L + + +
Sbjct: 429 EFSSFGSISRVKVMQEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 485
>Hs4505575 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 633
Score = 56.6 bits (135), Expect = 1e-07
Identities = 77/354 (21%), Positives = 147/354 (40%), Gaps = 55/354 (15%)
Query: 122 IFVASLAATLSDSELNASVTKEFAKYGKIVSVKVLRDP-ANRPYAFVQYASDDEALNALS 180
IF+ +L ++ N ++ F+ +G I+S KV+ D ++ Y FV + + + A A+
Sbjct: 101 IFIKNLDKSID----NKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIE 156
Query: 181 QAQGTTLNNRNIRCERAKVN---------RTVFISSSFANPLEGKLTVEKVVDLMSKFGE 231
+ G LN+R + R K R ++ + + E++ DL FG
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL---FGP 213
Query: 232 LEQVVPSRDQMYKKNYYPSEVANSWFIQYAYRDDAIRAYLQM---KLNYEYMVEWAQNVD 288
V D+ K + F+ + +DA +A +M +LN + +
Sbjct: 214 ALSVKVMTDESGKSKGF-------GFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 266
Query: 289 VPPRFNLLLSKAKICEKERLERERFGKQPIFIDNKSIFIGQLNFKVTKPLLLERFSKYGE 348
V + L K K E+++++R + ++++ L+ + L + FS +G
Sbjct: 267 VERQTEL---KRKF---EQMKQDRITR----YQGVNLYVKNLDDGIDDERLRKEFSPFGT 316
Query: 349 IDNCNLIHKQEQLKCFAFIKYKTPASAAKALERENHSIFVEKILHVQIREVSNSRRSSID 408
I + ++ + + K F F+ + +P A KA+ N I K L+V + + R++ +
Sbjct: 317 ITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHL- 375
Query: 409 SNKSFQGPQLNLAPPPLNIGRRASTGSFSKYMYPLPNHLQPNLPSHYVYATIQE 462
+N+ Q R AS + P+ N QP PS Y A I +
Sbjct: 376 TNQYMQ--------------RMASVRAVPN---PVINPYQPAPPSGYFMAAIPQ 412
>Hs13569958 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 631
Score = 55.8 bits (133), Expect = 2e-07
Identities = 67/302 (22%), Positives = 132/302 (43%), Gaps = 44/302 (14%)
Query: 122 IFVASLAATLSDSELNASVTKEFAKYGKIVSVKVLRDP-ANRPYAFVQYASDDEALNALS 180
IFV +L ++++ L +V+ +G I+S V+ D ++ Y FV + + + A A+
Sbjct: 101 IFVKNLDKSINNKALYDTVSA----FGNILSCNVVCDENGSKGYGFVHFETHEAAERAIK 156
Query: 181 QAQGTTLNNRNI-------RCE-------RAKVNRTVFISSSFANPLEGKLTVEKVVDLM 226
+ G LN R + R E RAK V+I +F ++ E++ DL
Sbjct: 157 KMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYI-KNFGEDMDD----ERLKDLF 211
Query: 227 SKFGELEQVVPSRDQMYKKNYYPSEVANSWFIQYAYRDDAIRAYLQM---KLNYEYMVEW 283
KFG V D+ K + F+ + +DA +A +M +LN + +
Sbjct: 212 GKFGPALSVKVMTDESGKSKGF-------GFVSFERHEDAQKAVDEMNGKELNGKQIYVG 264
Query: 284 AQNVDVPPRFNLLLSKAKICEKERLERERFGKQPIFIDNKSIFIGQLNFKVTKPLLLERF 343
V + L + E+++++R + + ++++ L+ + L + F
Sbjct: 265 RAQKKVERQTELKRT------FEQMKQDRITRYQVV----NLYVKNLDDGIDDERLRKAF 314
Query: 344 SKYGEIDNCNLIHKQEQLKCFAFIKYKTPASAAKALERENHSIFVEKILHVQIREVSNSR 403
S +G I + ++ + + K F F+ + +P A KA+ N I K L+V + + R
Sbjct: 315 SPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
Query: 404 RS 405
++
Sbjct: 375 QA 376
>At1g45100 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 497
Score = 54.7 bits (130), Expect = 5e-07
Identities = 67/299 (22%), Positives = 130/299 (43%), Gaps = 52/299 (17%)
Query: 127 LAATLSDSELNASVTKEFAKYGKIVSVKVLRDPANRP--YAFVQYASDDEALNALSQAQG 184
+ + LS A + F ++VSV+++ + + Y FV++AS A AL + G
Sbjct: 161 IVSNLSPLTKIAHIKGFFNGVAQVVSVRLVVNHEGKHVGYGFVEFASAYGANKALEEKNG 220
Query: 185 TTLNNRNIR----------CERAKVNRTVFISSSFANPLEGKLTVEKVVDLMSKFGELEQ 234
L+N I E A + +T+F+++ L + + +++ GE+
Sbjct: 221 EYLHNHKILLMKGHESPGFAEEAAITKTLFVAN-----LRDSIQISDIINFFKDVGEVVH 275
Query: 235 VVPSRDQMYKKNYYPSEVANSWFIQYAYRDDAIRAYLQMKLNYEYMVEWAQNVD------ 288
V + K A F+++A ++A +A ++ N EY+ + ++D
Sbjct: 276 VRLIVNSQGKH-------AGWGFVEFASANEAEKALVK---NGEYLHNYKISLDGAKTAP 325
Query: 289 -VPPRFNL--------LLSKAKICEKERLERERFGKQPIFID-----NKSIFIGQL--NF 332
PP+F L L + + KE E + P F++ ++F+ L N
Sbjct: 326 HRPPKFCLDHKVWYEDYLRRESLLIKEVEGVEGLDETPDFLEEVAARKNTVFVANLPYNC 385
Query: 333 KVTKPLLLERFSKYGEIDNCNLI--HKQEQLKCFAFIKYKTPASAAKALERENHSIFVE 389
++ P ++ FS GEI + +I H E + C F+++ + A KAL+++ I V+
Sbjct: 386 RLIVPTIINFFSDVGEIVHIRIIVDHMGEPVGC-GFVEFNSSNEAEKALQKKTGKISVD 443
>Hs4503551 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 326
Score = 52.4 bits (124), Expect = 2e-06
Identities = 64/284 (22%), Positives = 118/284 (41%), Gaps = 33/284 (11%)
Query: 144 FAKYGKIVSVKVLRDPA---NRPYAFVQYASDDEALNALSQAQGTTLNNRNIRCERAKVN 200
F+ G++ S K++RD + Y FV Y + +A A++ G L ++ I+ A+ +
Sbjct: 40 FSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPS 99
Query: 201 RTVFISSS-FANPLEGKLTVEKVVDLMSKFGELEQVVPSRDQMYKKNYYPSEVANSWFIQ 259
V ++ + + L +T + V D+ S+FG +++ SR + + VA F +
Sbjct: 100 SEVIKDANLYISGLPRTMTQKDVEDMFSRFG---RIINSRVLVDQTTGLSRGVAFIRFDK 156
Query: 260 YAYRDDAIRAYLQMK-------LNYEYMVEWAQNVDVPPRFNLLLSKA-KICEKERLERE 311
+ ++AI ++ K + ++ QN +V L S A + + +
Sbjct: 157 RSEAEEAITSFNGHKPPGSSEPIAVKFAANPNQNKNVALLSQLYHSPARRFGGPVHHQAQ 216
Query: 312 RFGKQPIFIDNKS----------------IFIGQLNFKVTKPLLLERFSKYGEIDNCNLI 355
RF P+ +D+ S IFI L + +L + F +G + N +I
Sbjct: 217 RFRFSPMGVDHMSGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVI 276
Query: 356 HKQEQLKC--FAFIKYKTPASAAKALERENHSIFVEKILHVQIR 397
KC F F+ AA A+ N +KIL V +
Sbjct: 277 RDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVSFK 320
>At1g71770 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 668
Score = 51.6 bits (122), Expect = 4e-06
Identities = 60/297 (20%), Positives = 125/297 (41%), Gaps = 44/297 (14%)
Query: 122 IFVASLAATLSDSELNASVTKEFAKYGKIVSVKVLRDPANRP--YAFVQYASDDEALNAL 179
++V L ++++S L F + + +++V RD +R YA+V +A+ ++A A+
Sbjct: 47 LYVGDLDPSVNESHL----LDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAM 102
Query: 180 SQAQGTTLNNRNIRCERAKVNRTVFISSS---FANPLEGKLTVEKVVDLMSKFGELEQVV 236
+ +R IR + + + +S F L+ + + + + S FG +
Sbjct: 103 ESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCK 162
Query: 237 PSRDQMYKKNYYPSEVANSWFIQYAYRDDAIRAYLQMKLNYEYMVEWAQNVDVPPRFNLL 296
+ D + + Y F+Q+ + A A KLN +L
Sbjct: 163 VAMDVVGRSKGYG-------FVQFEKEETAQAAI--DKLN-----------------GML 196
Query: 297 LSKAKI-----CEKERLERERFGKQPIFIDNKSIFIGQLNFKVTKPLLLERFSKYGEIDN 351
L+ ++ ++ R G P F + +++ L ++T L + F KYG+I +
Sbjct: 197 LNDKQVFVGHFVRRQDRARSESGAVPSFTN---VYVKNLPKEITDDELKKTFGKYGDISS 253
Query: 352 CNLIHKQE-QLKCFAFIKYKTPASAAKALERENHSIFVEKILHVQIREVSNSRRSSI 407
++ Q + F F+ + +P +AA A+E+ N E +L+V + + R +
Sbjct: 254 AVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEEL 310
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.315 0.133 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,142,036
Number of Sequences: 60738
Number of extensions: 1445871
Number of successful extensions: 4366
Number of sequences better than 1.0e-05: 19
Number of HSP's better than 0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 4304
Number of HSP's gapped (non-prelim): 50
length of query: 708
length of database: 30,389,216
effective HSP length: 114
effective length of query: 594
effective length of database: 23,465,084
effective search space: 13938259896
effective search space used: 13938259896
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)