ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI4855 good J KOG1068 Translation, ribosomal structure and biogenesis Exosomal 3'-5' exoribonuclease complex, subunit Rrp41 and related exoribonucleases
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI4855 1689897 1689190 -236
(236 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YGR158c [J] KOG1068 Exosomal 3'-5' exoribonuclease complex subun... 189 2e-48
SPBC211.08c [J] KOG1068 Exosomal 3'-5' exoribonuclease complex s... 70 3e-12
CE20469 [J] KOG1068 Exosomal 3'-5' exoribonuclease complex subun... 59 6e-09
Hs9506689 [J] KOG1068 Exosomal 3'-5' exoribonuclease complex sub... 58 1e-08
7298022 [J] KOG1068 Exosomal 3'-5' exoribonuclease complex subun... 55 8e-08
SPAC3G9.10c [J] KOG1068 Exosomal 3'-5' exoribonuclease complex s... 53 3e-07
YGR195w [J] KOG1068 Exosomal 3'-5' exoribonuclease complex subun... 53 4e-07
At3g61620 [J] KOG1068 Exosomal 3'-5' exoribonuclease complex sub... 51 2e-06
>YGR158c [J] KOG1068 Exosomal 3'-5' exoribonuclease complex subunit Rrp41
and related exoribonucleases
Length = 250
Score = 189 bits (481), Expect = 2e-48
Identities = 100/236 (42%), Positives = 152/236 (64%), Gaps = 14/236 (5%)
Query: 1 MSVQDRRRILGPAEAKPLQFAAITPVRTVENRDD--GNGNKSGKESVFISTDLVTNANGS 58
M+VQDRRR+LGPA AKP+ F+ T + D GN+S +E + + T + N NGS
Sbjct: 1 MNVQDRRRLLGPAAAKPMAFSNTTTHVPEKKSTDLTPKGNESEQE-LSLHTGFIENCNGS 59
Query: 59 SYLEYMDGTSDQVLVMSSVFGPRPLRGSFQSKASVSIQFKEVTLEHLNTGEIKEICTFLT 118
+ +E Q ++++V+GPR +RGSF S+ ++SIQ K LE NT E+KE+ +FL
Sbjct: 60 ALVEARS-LGHQTSLITAVYGPRSIRGSFTSQGTISIQLKNGLLEKYNTNELKEVSSFLM 118
Query: 119 NVFNAVINVEKYPKSGIDIFIDLIQHSN--SNPTEE--------ANIVNILPTCINSITM 168
+FN+V+N+ +YPKSGIDIF+ L + +NP ++ + I +++P CI SIT+
Sbjct: 119 GIFNSVVNLSRYPKSGIDIFVYLTYDKDLTNNPQDDDSQSKMMSSQISSLIPHCITSITL 178
Query: 169 ALVDAGIEIIDLVSAGSKDNSVVAFIRNGHEIVGIWSDDDNVTDISKLIEECKAKY 224
AL DAGIE++D+ AG + +VV+FI+NG EIVG W DD + D+ + ++ CK +Y
Sbjct: 179 ALADAGIELVDMAGAGEANGTVVSFIKNGEEIVGFWKDDGDDEDLLECLDRCKEQY 234
>SPBC211.08c [J] KOG1068 Exosomal 3'-5' exoribonuclease complex subunit Rrp41
and related exoribonucleases
Length = 257
Score = 70.1 bits (170), Expect = 3e-12
Identities = 61/217 (28%), Positives = 96/217 (44%), Gaps = 33/217 (15%)
Query: 3 VQDRRRILGPAEAKPLQFAAITPVRTVENRDDGNGNKSGKESVFISTDLVTNANGSSYLE 62
+ DR+R+ GP+ + P F RD K +++ T A GSSY E
Sbjct: 1 MSDRKRVYGPSVSVPPYFEEPEQPVFTRTRDVDRCRK-----IYLKLGWATKAVGSSYFE 55
Query: 63 YMDGTSDQVLVMSSVFGPRPLRG-SFQSKASVSIQFK------EVTLEHLNTGEIKEICT 115
S+++ + +V GPRP + +F+S A ++ +F+ V H+ T E K
Sbjct: 56 -----SEKIKIACTVSGPRPSKTFAFRSSAKLNCEFRLSPFSTSVRQGHVQTVEEKSYSQ 110
Query: 116 FLTNVFNAVINVEKYPKSGIDIFIDLIQHSNSNPTEEANIVNILPTCINSITMALVDAGI 175
+ + I + YPKS ID++I +I+ + T L I+ + A+ DA I
Sbjct: 111 MIEAAISPSILLHLYPKSSIDVYIQVIESDGALAT--------LAAAISCASSAIADANI 162
Query: 176 EIIDLVSAGSKDNSVVAFIRNGHEIVGIWSDDDNVTD 212
+ IDLV+ S V F N E W D D V +
Sbjct: 163 DCIDLVTGSS-----VLFNPNTDE---YWIDPDYVDE 191
>CE20469 [J] KOG1068 Exosomal 3'-5' exoribonuclease complex subunit Rrp41
and related exoribonucleases
Length = 240
Score = 58.9 bits (141), Expect = 6e-09
Identities = 44/141 (31%), Positives = 67/141 (47%), Gaps = 24/141 (17%)
Query: 54 NANGSSYLEYMDGTSDQVLVMSSVFGPRPLRGS--FQSKASVSIQFKEVTLEHLNT---- 107
NA GS YLE+ V+ +V+GP + S + K ++ Q+ L
Sbjct: 31 NAEGSCYLEH-----GNTKVLCAVYGPYEGKSSKRIEDKCAIVCQYSATKFSGLERKNRT 85
Query: 108 -GEIK--EICTFLTNVFNAVINVEKYPKSGIDIFIDLIQHSNSNPTEEANIVNILPTCIN 164
G+ K EI L F +VI E +P+S +DIF ++IQ SN L C+N
Sbjct: 86 RGDRKSTEISRLLEKAFESVILTEAFPRSQLDIFCEVIQGDGSN----------LAACVN 135
Query: 165 SITMALVDAGIEIIDLVSAGS 185
+ ++AL DAGI + + SA +
Sbjct: 136 ATSLALADAGIPMKGIASAAT 156
>Hs9506689 [J] KOG1068 Exosomal 3'-5' exoribonuclease complex subunit Rrp41
and related exoribonucleases
Length = 245
Score = 58.2 bits (139), Expect = 1e-08
Identities = 49/185 (26%), Positives = 84/185 (44%), Gaps = 36/185 (19%)
Query: 36 NGNKSGK-ESVFISTDLVTNANGSSYLEYMDGTSDQVLVMSSVFGPRPLRGS----FQSK 90
+G ++G+ + + A+GS+Y+E ++ V+GP +RGS +
Sbjct: 15 DGRRAGELRKIQARMGVFAQADGSAYIE-----QGNTKALAVVYGPHEIRGSRARALPDR 69
Query: 91 ASVSIQFKEVTLEHLNTGEIK----------EICTFLTNVFNAVINVEKYPKSGIDIFID 140
A V+ Q+ T +TGE K E+ L F A I + +P+S IDI++
Sbjct: 70 ALVNCQYSSATF---STGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQ 126
Query: 141 LIQHSNSNPTEEANIVNILPTCINSITMALVDAGIEIIDLV---SAGSKDNSVVAFIRNG 197
++Q C+N+ T+A++DAGI + D V SAG D + +A + +
Sbjct: 127 VLQADGGT----------YAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHV 176
Query: 198 HEIVG 202
E G
Sbjct: 177 EEAAG 181
>7298022 [J] KOG1068 Exosomal 3'-5' exoribonuclease complex subunit Rrp41
and related exoribonucleases
Length = 246
Score = 55.1 bits (131), Expect = 8e-08
Identities = 43/161 (26%), Positives = 78/161 (47%), Gaps = 33/161 (20%)
Query: 56 NGSSYLEYMDGTSDQVLVMSSVFGPRPLRGSFQSKASVSIQFKEVTLEHLNTGEIK---- 111
+GS+Y+E V+++V+GP +G+ Q+++ ++ Q+ + T +T E K
Sbjct: 37 DGSAYME-----QGNTKVLAAVYGPHQAKGN-QTESVINCQYSQATF---STAERKNRPR 87
Query: 112 ------EICTFLTNVFNAVINVEKYPKSGIDIFIDLIQHSNSNPTEEANIVNILPTCINS 165
E +L +A I E YP+S IDI+++++Q +N +N+
Sbjct: 88 GDRKSLEFKLYLQQALSAAIKSELYPRSQIDIYVEVLQDDGAN----------YAVALNA 137
Query: 166 ITMALVDAGI----EIIDLVSAGSKDNSVVAFIRNGHEIVG 202
T+AL+DAGI I+ ++ SK N + I E+ G
Sbjct: 138 ATLALIDAGICLNEFIVACTASLSKSNIPLTDISQFEEVSG 178
>SPAC3G9.10c [J] KOG1068 Exosomal 3'-5' exoribonuclease complex subunit Rrp41
and related exoribonucleases
Length = 242
Score = 53.1 bits (126), Expect = 3e-07
Identities = 41/175 (23%), Positives = 81/175 (45%), Gaps = 28/175 (16%)
Query: 56 NGSSYLEYMDGTSDQVLVMSSVFGPRPLRGSFQSKASVSIQFKEVTLEHLNTGEIKEI-- 113
NGS+++E V+ V GP +++A + E+ + +T ++K+
Sbjct: 36 NGSAFIEL-----GNTKVLCIVDGPSEPVIKSKARADRTFVNVEINIASFSTIDVKKRFK 90
Query: 114 --------CTFLTNVFNAVINVEKYPKSGIDIFIDLIQHSNSNPTEEANIVNILPTCINS 165
C L N F +I E YP+S I +++ ++Q + ++ +CIN+
Sbjct: 91 SDRRIQLQCLALQNTFEEIIQTELYPRSQISVYLHVLQDDGA----------VMASCINA 140
Query: 166 ITMALVDAGIEIIDLV---SAGSKDNSVVAFIRNGHEIVGIWSDDDNVTDISKLI 217
T+AL+DAGI + D V +AG ++ ++ + + E W + +I K++
Sbjct: 141 TTLALIDAGIPVKDFVCCSTAGIVESDMLLDLNSLEESALSWLTVAVLGNIKKVV 195
>YGR195w [J] KOG1068 Exosomal 3'-5' exoribonuclease complex subunit Rrp41
and related exoribonucleases
Length = 246
Score = 52.8 bits (125), Expect = 4e-07
Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 20/136 (14%)
Query: 55 ANGSSYLEYMDGTSDQVLVMSSVFGPRPLRGSFQSKASVSI--------QFKEVTLEHLN 106
A+GSSY+E G + + ++ PR SKA +++ +F+ H N
Sbjct: 36 ADGSSYME--QGNNKIITLVKGPKEPRLKSQMDTSKALLNVSVNITKFSKFERSKSSHKN 93
Query: 107 TGEIKEICTFLTNVFNAVINVEKYPKSGIDIFIDLIQHSNSNPTEEANIVNILPTCINSI 166
+ EI T L +F + + YP++ IDI I +++ I+ + IN I
Sbjct: 94 ERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIHVLEQDGG----------IMGSLINGI 143
Query: 167 TMALVDAGIEIIDLVS 182
T+AL+DAGI + D +S
Sbjct: 144 TLALIDAGISMFDYIS 159
>At3g61620 [J] KOG1068 Exosomal 3'-5' exoribonuclease complex subunit Rrp41
and related exoribonucleases
Length = 241
Score = 50.8 bits (120), Expect = 2e-06
Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 25/140 (17%)
Query: 51 LVTNANGSSYLEYMDGTSDQVLVMSSVFGPRPLRG-SFQSKASVSIQFKEVTLEHLNTGE 109
+V+ A+GS+ E M T V+++V+GPR ++ S Q K ++ E ++ +TG+
Sbjct: 28 VVSKADGSAVFE-MGNTK----VIAAVYGPREIQNKSQQKKNDHAVVLCEYSMAQFSTGD 82
Query: 110 IK---------EICTFLTNVFNAVINVEKYPKSGIDIFIDLIQHSNSNPTEEANIVNILP 160
+ E+ + A I E P S IDIF+ ++Q +
Sbjct: 83 RRRQKFDRRSTELSLVIRQTMEACILTELMPHSQIDIFLQVLQADGGTRS---------- 132
Query: 161 TCINSITMALVDAGIEIIDL 180
CIN+ T+AL DAGI + DL
Sbjct: 133 ACINAATLALADAGIPMRDL 152
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.315 0.133 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,937,558
Number of Sequences: 60738
Number of extensions: 573212
Number of successful extensions: 1586
Number of sequences better than 1.0e-05: 8
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1576
Number of HSP's gapped (non-prelim): 8
length of query: 236
length of database: 30,389,216
effective HSP length: 103
effective length of query: 133
effective length of database: 24,133,202
effective search space: 3209715866
effective search space used: 3209715866
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)