ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactVI4879   good          J     KOG3321  Translation, ribosomal structure and biogenesis                Mitochondrial ribosomal protein S10

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactVI4879 1697109  1697729 207  
         (207 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YDR041w [J] KOG3321 Mitochondrial ribosomal protein S10               229   2e-60
SPBC23E6.11 [J] KOG3321 Mitochondrial ribosomal protein S10           123   2e-28
CE20222 [J] KOG3321 Mitochondrial ribosomal protein S10                52   8e-07

>YDR041w [J] KOG3321 Mitochondrial ribosomal protein S10
          Length = 203

 Score =  229 bits (584), Expect = 2e-60
 Identities = 119/209 (56%), Positives = 149/209 (70%), Gaps = 22/209 (10%)

Query: 7   AVRSFVRYQSTTSLNPKILPFNAKETPIPKCVEAVYHAPLKIEPTHRDLIADIQLRSYDN 66
           A+RSF+R QST               P P  VEAVY+APLK+   + DL+ADIQLRSYDN
Sbjct: 7   ALRSFIRTQSTR--------------PYPVNVEAVYYAPLKLPIKYGDLVADIQLRSYDN 52

Query: 67  ENLDFFSSFVLRAGYYLGIPMKGPKPLPTKRKRWTVIRAPFVMAKSKENFERHTHARLIR 126
           ENLDF+S F+LR GYYLGIP+ GPKPLPT+R+RWTVI++PFV AKSKENFERHTH RLIR
Sbjct: 53  ENLDFYSDFILRTGYYLGIPLTGPKPLPTRRERWTVIKSPFVHAKSKENFERHTHKRLIR 112

Query: 127 LYDCNTELVETLLSYISKHGISGVGIKCNLYQREPIDLDSKKDGPELE----NIDISSQL 182
            +D N E+++ L++YI+KH ++GVG+KCN +QR  I LD   D   LE    NID    L
Sbjct: 113 AWDTNPEVLQMLIAYITKHSMAGVGMKCNFFQRSEISLDLGSDANGLEKSLSNIDELYSL 172

Query: 183 QGLD----DVVGAKVVELLNNPEFKKHLQ 207
           +  D      VG KV+ELL++P+FKKHL+
Sbjct: 173 RNDDKAQTSAVGQKVLELLDSPDFKKHLE 201


>SPBC23E6.11 [J] KOG3321 Mitochondrial ribosomal protein S10
          Length = 219

 Score =  123 bits (308), Expect = 2e-28
 Identities = 64/177 (36%), Positives = 102/177 (57%), Gaps = 4/177 (2%)

Query: 34  IPKCVEAVYHAPLKIEPTHRDLI-ADIQLRSYDNENLDFFSSFVLRAGYYLGIPMKGPKP 92
           +P  V AVY  P+K  P+  D++ A ++++S++   LD F+ F+ R  YY+ IP+KGP+P
Sbjct: 41  LPSNVAAVYLNPVKFNPSENDVLCASLKIKSFETPKLDTFTDFICRTAYYMKIPIKGPRP 100

Query: 93  LPTKRKRWTVIRAPFVMAKSKENFERHTHARLIRLYDCNTELVETLLSYISKHGISGVGI 152
           LP K + WT++R+PF+   S+ENFER TH+RLI+LY  N   +ET  SY+ K  +  + +
Sbjct: 101 LPNKVESWTLLRSPFIHKSSQENFERITHSRLIQLYSVNPVTLETFFSYLRKCNMWDLKL 160

Query: 153 KCNLYQREPIDLDSKKDGPELENIDISSQL---QGLDDVVGAKVVELLNNPEFKKHL 206
           +   Y+ E ID   K    + ++ D   +L       D++     +LL N    K L
Sbjct: 161 QAKAYEYESIDDALKNFESQSKSTDNFKELLNGPSKKDIITQNAEKLLRNDPIYKDL 217


>CE20222 [J] KOG3321 Mitochondrial ribosomal protein S10
          Length = 156

 Score = 51.6 bits (122), Expect = 8e-07
 Identities = 30/112 (26%), Positives = 55/112 (48%)

Query: 58  DIQLRSYDNENLDFFSSFVLRAGYYLGIPMKGPKPLPTKRKRWTVIRAPFVMAKSKENFE 117
           +I+ R +D   L  ++SF+ +   +L IP    + LP  R     +R+ FV  K K ++E
Sbjct: 45  EIEYRGHDKAVLKSYTSFLQQVCQHLEIPQGRLEVLPYIRWVQPALRSKFVHKKYKLHYE 104

Query: 118 RHTHARLIRLYDCNTELVETLLSYISKHGISGVGIKCNLYQREPIDLDSKKD 169
             TH   + + +       T L YI ++   GVG++    + +P+ L  +K+
Sbjct: 105 TRTHISKLEILNVTGSTASTFLEYIQRNIPEGVGMRVGFTELQPLPLTIQKN 156


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.320    0.138    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,939,482
Number of Sequences: 60738
Number of extensions: 562853
Number of successful extensions: 1272
Number of sequences better than 1.0e-05: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1267
Number of HSP's gapped (non-prelim): 3
length of query: 207
length of database: 30,389,216
effective HSP length: 101
effective length of query: 106
effective length of database: 24,254,678
effective search space: 2570995868
effective search space used: 2570995868
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)