ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI4887 good R KOG0153 General function prediction only Predicted RNA-binding protein (RRM superfamily)
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI4887 1700355 1699450 -302
(302 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YBR065c [R] KOG0153 Predicted RNA-binding protein (RRM superfamily) 88 2e-17
At2g29580 [R] KOG0153 Predicted RNA-binding protein (RRM superfa... 59 9e-09
At1g07360 [R] KOG0153 Predicted RNA-binding protein (RRM superfa... 59 9e-09
7296892 [R] KOG0153 Predicted RNA-binding protein (RRM superfamily) 52 8e-07
SPCC550.02c [R] KOG0153 Predicted RNA-binding protein (RRM super... 52 1e-06
CE06432_1 [R] KOG0153 Predicted RNA-binding protein (RRM superfa... 51 2e-06
Hs8922328 [R] KOG0153 Predicted RNA-binding protein (RRM superfa... 51 2e-06
>YBR065c [R] KOG0153 Predicted RNA-binding protein (RRM superfamily)
Length = 364
Score = 87.8 bits (216), Expect = 2e-17
Identities = 72/245 (29%), Positives = 111/245 (44%), Gaps = 59/245 (24%)
Query: 10 ICERCLPLGENTPTLIRYPNGRECKFCTFPFDSYSYTIN---HTTFHTICCPKCATKNLI 66
ICE+CL E + + P G ECK CT PF Y + + + T+ C +CAT+ I
Sbjct: 12 ICEQCLG-DEANIRMTKIPQGSECKICTLPFTLYHFKTSKRSNNIIKTLICVRCATQRNI 70
Query: 67 CQVCLNDFEHGIPMHLRNSMKQLLN-ENADSVIPKNDMMKRFIGLSSKQVAPLNI----- 120
CQ C+ D IP+ LR+ + L+N EN + KNDMMKRF+ L + ++ I
Sbjct: 71 CQCCMLDSRWHIPIQLRDHLISLVNEENVMTEEAKNDMMKRFLSLKNVKLGGAQITSDPS 130
Query: 121 ------DKLK------------------------------QAESIRKWR-------VREL 137
DKLK + +++ K+ +++L
Sbjct: 131 EADNIVDKLKNILLRATSDGPSTPLIKNTTALYKNEKGANEVKNLEKYASVDISHILKKL 190
Query: 138 PFNSNV--NDTKDTFFLYNIDPNLTESQI---VSQLIVATNNNLERENTSLKLNSKLRIA 192
P N + N + +FFLYNID ++ E +I VSQL+ + + SL +N K +
Sbjct: 191 PLNESFLKNPSTKSFFLYNIDASIPEWKITDTVSQLL-GIKKWKDGNSLSLIVNHKAKCG 249
Query: 193 TLTFK 197
L F+
Sbjct: 250 GLRFQ 254
>At2g29580 [R] KOG0153 Predicted RNA-binding protein (RRM superfamily)
Length = 483
Score = 58.9 bits (141), Expect = 9e-09
Identities = 35/101 (34%), Positives = 52/101 (50%), Gaps = 8/101 (7%)
Query: 10 ICERCLPLGENTPTLIRYPN-GRECKFCTFPFDSYSYTINHTTFH--TICCPKCATKNLI 66
ICE CL G+N + N +ECK CT PF + + + T C C +
Sbjct: 22 ICESCL--GDNPYVRMTKANYDKECKICTRPFTVFRWRPGRDARYKKTEVCQTCCKLKNV 79
Query: 67 CQVCLNDFEHGIPMHLRNSMKQLLNENADSVIPKNDMMKRF 107
CQVCL D E+G+P+ +R++ LN + IPK+D+ + F
Sbjct: 80 CQVCLLDLEYGLPVQVRDT---ALNISTHDSIPKSDVNREF 117
>At1g07360 [R] KOG0153 Predicted RNA-binding protein (RRM superfamily)
Length = 481
Score = 58.9 bits (141), Expect = 9e-09
Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 8/115 (6%)
Query: 10 ICERCLPLGENTPTLIRYPN-GRECKFCTFPFDSYSYTINHTTFH--TICCPKCATKNLI 66
ICE CL G+N + N +ECK CT PF + + + T C C +
Sbjct: 22 ICESCL--GDNPYVRMTKANYDKECKICTRPFTVFRWRPGRDARYKKTEICQTCCKLKNV 79
Query: 67 CQVCLNDFEHGIPMHLRNSMKQLLNENADSVIPKNDMMKRFIGLSSKQVAPLNID 121
CQVCL D E+G+P+ +R++ LN + IPK+D+ + + + A +D
Sbjct: 80 CQVCLLDLEYGLPVQVRDT---ALNISTHDSIPKSDVNREYFAEEHDRKARAGLD 131
>7296892 [R] KOG0153 Predicted RNA-binding protein (RRM superfamily)
Length = 416
Score = 52.4 bits (124), Expect = 8e-07
Identities = 30/101 (29%), Positives = 53/101 (51%), Gaps = 10/101 (9%)
Query: 10 ICERCLPLGENTPT-LIRYPNGRECKFCTFPFDSYSYT--INHTTFHTICCPKCATKNLI 66
+C+ CL G+N +I+ G+ECK CT PF + + T C CA +
Sbjct: 21 LCQTCL--GDNPYVRMIKERFGKECKICTRPFTIFRWCPGARMRFKKTEICQTCARLKNV 78
Query: 67 CQVCLNDFEHGIPMHLRNSMKQLLNENADSVIPKNDMMKRF 107
CQ CL D E+G+P+ +R++ ++ + +P++D+ K +
Sbjct: 79 CQTCLLDLEYGLPIQVRDAALKVADN-----MPQSDVNKEY 114
>SPCC550.02c [R] KOG0153 Predicted RNA-binding protein (RRM superfamily)
Length = 354
Score = 51.6 bits (122), Expect = 1e-06
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 10/109 (9%)
Query: 10 ICERCLPLGENTPT-LIRYPNGRECKFCTFPFDSYSYTINH--TTFHTICCPKCATKNLI 66
ICERCL G+N+ + + P G+ECK C+ P + + T C CA
Sbjct: 22 ICERCL--GDNSYVRMTKEPLGQECKICSKPCTIFRWIKERGQKPGKTQICVGCARYKNC 79
Query: 67 CQVCLNDFEHGIPMHLRNSMKQLLNENADSVIPKNDMMKRFIGLSSKQV 115
CQ C+ D + G+P+ LR++ +L+ P ND+ + F + +++
Sbjct: 80 CQSCMLDLQFGLPIALRDAALKLVESG-----PTNDINREFFAQNQQRL 123
>CE06432_1 [R] KOG0153 Predicted RNA-binding protein (RRM superfamily)
Length = 491
Score = 51.2 bits (121), Expect = 2e-06
Identities = 31/102 (30%), Positives = 49/102 (47%), Gaps = 12/102 (11%)
Query: 10 ICERCLPLGENTP--TLIRYPNGRECKFCTFPFDSYSYTINHTTFH--TICCPKCATKNL 65
+CE CL N P +++ GRECK C PF ++ + + T C CA
Sbjct: 24 LCETCLG---NNPYMRMMKDKYGRECKICERPFTTFRWQPGKGARYKNTELCQTCAKVKN 80
Query: 66 ICQVCLNDFEHGIPMHLRNSMKQLLNENADSVIPKNDMMKRF 107
+CQ C+ D E+G+P+ +R+ Q+ + IPK + F
Sbjct: 81 VCQTCMFDLEYGLPVQVRDHELQIADN-----IPKQGANRDF 117
>Hs8922328 [R] KOG0153 Predicted RNA-binding protein (RRM superfamily)
Length = 420
Score = 50.8 bits (120), Expect = 2e-06
Identities = 29/101 (28%), Positives = 51/101 (49%), Gaps = 10/101 (9%)
Query: 10 ICERCLPLGENTPT-LIRYPNGRECKFCTFPFDSYSYT--INHTTFHTICCPKCATKNLI 66
+C+ CL GEN + + G+ECK C PF + + + T C C+ +
Sbjct: 23 LCQTCL--GENPYIRMTKEKYGKECKICARPFTVFRWCPGVRMRFKKTEVCQTCSKLKNV 80
Query: 67 CQVCLNDFEHGIPMHLRNSMKQLLNENADSVIPKNDMMKRF 107
CQ CL D E+G+P+ +R++ ++ +PK+D+ K +
Sbjct: 81 CQTCLLDLEYGLPIQVRDAGLSFKDD-----MPKSDVNKEY 116
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.320 0.135 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,178,852
Number of Sequences: 60738
Number of extensions: 781582
Number of successful extensions: 2754
Number of sequences better than 1.0e-05: 7
Number of HSP's better than 0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2745
Number of HSP's gapped (non-prelim): 8
length of query: 302
length of database: 30,389,216
effective HSP length: 106
effective length of query: 196
effective length of database: 23,950,988
effective search space: 4694393648
effective search space used: 4694393648
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)