ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI4921 good K KOG2906 Transcription RNA polymerase III subunit C11
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI4921 1708657 1708322 -112
(112 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YDR045c [K] KOG2906 RNA polymerase III subunit C11 199 7e-52
Hs7706499 [K] KOG2906 RNA polymerase III subunit C11 120 3e-28
SPAC22A12.05 [K] KOG2906 RNA polymerase III subunit C11 119 9e-28
7302348 [K] KOG2906 RNA polymerase III subunit C11 116 4e-27
CE25620 [K] KOG2906 RNA polymerase III subunit C11 92 2e-19
At4g07950 [K] KOG2906 RNA polymerase III subunit C11 75 2e-14
At1g01210 [K] KOG2906 RNA polymerase III subunit C11 74 3e-14
ECU03g0490 [K] KOG2906 RNA polymerase III subunit C11 72 2e-13
7299869 [K] KOG2691 RNA polymerase II subunit 9 54 5e-08
CE26319 [K] KOG2691 RNA polymerase II subunit 9 51 2e-07
Hs5453930 [K] KOG2691 RNA polymerase II subunit 9 51 3e-07
SPAPYUG7.04c [K] KOG2691 RNA polymerase II subunit 9 50 7e-07
At3g16980 [K] KOG2691 RNA polymerase II subunit 9 49 1e-06
SPAC20H4.03c [K] KOG1105 Transcription elongation factor TFIIS/C... 48 2e-06
YJR063w [K] KOG2907 RNA polymerase I transcription factor TFIIS ... 48 3e-06
At2g38560 [K] KOG1105 Transcription elongation factor TFIIS/Cofa... 48 3e-06
YGL043w [K] KOG1105 Transcription elongation factor TFIIS/Cofact... 47 3e-06
Hs22059374_1 [K] KOG2906 RNA polymerase III subunit C11 46 7e-06
CE03726 [K] KOG1105 Transcription elongation factor TFIIS/Cofact... 46 1e-05
>YDR045c [K] KOG2906 RNA polymerase III subunit C11
Length = 110
Score = 199 bits (505), Expect = 7e-52
Identities = 88/112 (78%), Positives = 97/112 (86%), Gaps = 2/112 (1%)
Query: 1 MLSFCPLCNNMLLVSKADSGLYKLACGSCPYQFLIDGIEVYDRKNLPRKEVDDVLGGEGA 60
MLSFCP CNNMLL++ DSG+Y LAC SCPY+F I+GIE+YDRK LPRKEVDDVLGG
Sbjct: 1 MLSFCPSCNNMLLITSGDSGVYTLACRSCPYEFPIEGIEIYDRKKLPRKEVDDVLGG--G 58
Query: 61 WDNVDQTAAQCPNHDQCAGERAYFFQLQIRSADEPMTTFYKCVNCGHKWREN 112
WDNVDQT QCPN+D C GE AYFFQLQIRSADEPMTTFYKCVNCGH+W+EN
Sbjct: 59 WDNVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWKEN 110
>Hs7706499 [K] KOG2906 RNA polymerase III subunit C11
Length = 108
Score = 120 bits (301), Expect = 3e-28
Identities = 63/113 (55%), Positives = 74/113 (64%), Gaps = 7/113 (6%)
Query: 1 MLSFCPLCNNMLLVSKADSGLYKLACGSCPYQFLIDGIEVYDRKNLPRKEVDDVLGGEGA 60
ML FCP C N L+V + ++ AC +CPY I +V +RK KEVDDVLGG A
Sbjct: 1 MLLFCPGCGNGLIVEEGQR-CHRFACNTCPYVHNITR-KVTNRKYPKLKEVDDVLGGAAA 58
Query: 61 WDNVDQTAAQCPNHDQCAGERAYFFQLQIRSADEPMTTFYKCVN--CGHKWRE 111
W+NVD TA CP +C RAYF QLQ RSADEPMTTFYKC N CGH+WR+
Sbjct: 59 WENVDSTAESCP---KCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
>SPAC22A12.05 [K] KOG2906 RNA polymerase III subunit C11
Length = 109
Score = 119 bits (297), Expect = 9e-28
Identities = 57/111 (51%), Positives = 71/111 (63%), Gaps = 2/111 (1%)
Query: 2 LSFCPLCNNMLLVSKADSGLYKLACGSCPYQFLIDGIEVYDRKNLPRKEVDDVLGGEGAW 61
+ FCP C N L+V+ + G C +CPY F I +Y R +KEVDDVLGGE A+
Sbjct: 1 MQFCPTCGNHLIVAVDEEGRNAFDCRTCPYHFPISTF-LYSRHEFAQKEVDDVLGGEEAF 59
Query: 62 DNVDQTAAQCPNHDQCAGERAYFFQLQIRSADEPMTTFYKCVNCGHKWREN 112
++ QT C N +C RAYFFQLQIRSADEPM+TFY+C C +WREN
Sbjct: 60 ESNQQTEVTCEN-TKCDNNRAYFFQLQIRSADEPMSTFYRCTKCKFQWREN 109
>7302348 [K] KOG2906 RNA polymerase III subunit C11
Length = 108
Score = 116 bits (291), Expect = 4e-27
Identities = 59/114 (51%), Positives = 73/114 (63%), Gaps = 9/114 (7%)
Query: 1 MLSFCPLCNNMLLVSKADSGLYKLACGSCPYQFLIDGIEVYDRKNLPR-KEVDDVLGGEG 59
ML FCP C N+L++ + D+ ++ C +CPY I K PR KEVD VLGG+
Sbjct: 1 MLFFCPSCGNILIIEE-DTNCHRFTCNTCPYISKIR--RKISTKTFPRLKEVDHVLGGKA 57
Query: 60 AWDNVDQTAAQCPNHDQCAGERAYFFQLQIRSADEPMTTFYKCVN--CGHKWRE 111
AW+NVD T A+CP C +RAYF Q+Q RSADEPMTTFYKC N C H WR+
Sbjct: 58 AWENVDSTDAECPT---CGHKRAYFMQIQTRSADEPMTTFYKCCNHECNHTWRD 108
>CE25620 [K] KOG2906 RNA polymerase III subunit C11
Length = 108
Score = 91.7 bits (226), Expect = 2e-19
Identities = 48/113 (42%), Positives = 65/113 (57%), Gaps = 7/113 (6%)
Query: 1 MLSFCPLCNNMLLVSKADSGLYKLACGSCPYQFLIDGIEVYDRKNLPRKEVDDVLGGEGA 60
ML+FCP C +L + + + + +C +CPY + V R K++DDVLGG GA
Sbjct: 1 MLTFCPECGCVLQIESGEQCM-RFSCPACPYVCPVTQT-VTSRIYPKLKDIDDVLGGPGA 58
Query: 61 WDNVDQTAAQCPNHDQCAGERAYFFQLQIRSADEPMTTFYKCVN--CGHKWRE 111
W N T CP C+ RAYF QLQ RSADEP T FY+C + C H+W++
Sbjct: 59 WANAQVTDETCP---VCSHGRAYFMQLQTRSADEPSTIFYRCADNACAHRWKD 108
>At4g07950 [K] KOG2906 RNA polymerase III subunit C11
Length = 106
Score = 74.7 bits (182), Expect = 2e-14
Identities = 39/111 (35%), Positives = 61/111 (54%), Gaps = 7/111 (6%)
Query: 2 LSFCPLCNNMLLVSKADSGLYKLACGSCPYQFLIDG-IEVYDRKNLPRKEVDDVLGGEGA 60
+ FCP C N+L S + C +CPY I+ +E+ ++ L +K ++ V+ +
Sbjct: 1 MEFCPTCGNLLRYEGGGSS--RFFCSTCPYVANIERRVEIKKKQLLVKKSIEPVVTKDDI 58
Query: 61 WDNVDQTAAQCPNHDQCAGERAYFFQLQIRSADEPMTTFYKCVNCGHKWRE 111
+T A CP +C ++AYF +QIRSADEP + FY+C+ C WRE
Sbjct: 59 -PTAAETEAPCP---RCGHDKAYFKSMQIRSADEPESRFYRCLKCEFTWRE 105
>At1g01210 [K] KOG2906 RNA polymerase III subunit C11
Length = 106
Score = 73.9 bits (180), Expect = 3e-14
Identities = 39/111 (35%), Positives = 60/111 (53%), Gaps = 7/111 (6%)
Query: 2 LSFCPLCNNMLLVSKADSGLYKLACGSCPYQFLIDG-IEVYDRKNLPRKEVDDVLGGEGA 60
+ FCP C N+L G + C +CPY I +E+ ++ L +K ++ V+ +
Sbjct: 1 MEFCPTCGNLLRYE--GGGNSRFFCSTCPYVAYIQRQVEIKKKQLLVKKSIEAVVTKDDI 58
Query: 61 WDNVDQTAAQCPNHDQCAGERAYFFQLQIRSADEPMTTFYKCVNCGHKWRE 111
+T A CP +C ++AYF +QIRSADEP + FY+C+ C WRE
Sbjct: 59 -PTAAETEAPCP---RCGHDKAYFKSMQIRSADEPESRFYRCLKCEFTWRE 105
>ECU03g0490 [K] KOG2906 RNA polymerase III subunit C11
Length = 104
Score = 71.6 bits (174), Expect = 2e-13
Identities = 39/108 (36%), Positives = 58/108 (53%), Gaps = 6/108 (5%)
Query: 4 FCPLCNNMLLVSKADSGLYKLACGSCPYQFLIDGIEVYDRKNLPRKEVDDVLGGEGAWDN 63
FCPLC++ML+V K G +L+C C Y + I E+ + K+ + + + +
Sbjct: 3 FCPLCSSMLVVKKQAIG-NELSCKMCGYLYAISE-EISRTVGMTPKKSEGFVDEDESLKF 60
Query: 64 VDQTAAQCPNHDQCAGERAYFFQLQIRSADEPMTTFYKCVNCGHKWRE 111
V + +C +C E F +LQ RSADEPMT FYKC+ C W+E
Sbjct: 61 VTKCGKRC----ECGSEEVSFVELQTRSADEPMTIFYKCIRCKKVWKE 104
>7299869 [K] KOG2691 RNA polymerase II subunit 9
Length = 129
Score = 53.5 bits (127), Expect = 5e-08
Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 18/120 (15%)
Query: 2 LSFCPLCNNMLLVSK-ADSGLYKLACGSCPYQFLIDGIEVYDRKNLPRKE-----VDDVL 55
+ FC CNNML + ++ + AC +C Y+ D +Y K + + V DV+
Sbjct: 18 IRFCQECNNMLYPKEDKENKILLYACRNCDYKQEADSNCIYVNKIMHEIDELTHIVPDVI 77
Query: 56 GGEGAWDNVDQTAAQCPNH--DQCAGERAYFFQLQIRSADEPMTTFYKCV--NCGHKWRE 111
D T + +H +C+ A FFQ Q R A+E M +Y C NC H+W E
Sbjct: 78 S--------DPTLPRTEDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRWTE 129
>CE26319 [K] KOG2691 RNA polymerase II subunit 9
Length = 167
Score = 51.2 bits (121), Expect = 2e-07
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 8/115 (6%)
Query: 2 LSFCPLCNNMLLVSK-ADSGLYKLACGSCPYQFLIDGIEVYDRKNLPR-KEVDDVLGGEG 59
+ FCP CNNML + +S + +C +C ++ + +Y K + E+ ++G
Sbjct: 56 IKFCPECNNMLYPREDKESRVLMYSCRNCEHREVAANPCIYVNKLVHEIDELTQIVGDII 115
Query: 60 AWDNVDQTAA-QCPNHDQCAGERAYFFQLQIRSADEPMTTFYKCV--NCGHKWRE 111
+ +T QCP C +A FFQ Q + A+E M +Y C +C H+W E
Sbjct: 116 HDPTLPKTEEHQCP---VCGKSKAVFFQAQTKKAEEEMRLYYVCASQDCQHRWTE 167
>Hs5453930 [K] KOG2691 RNA polymerase II subunit 9
Length = 125
Score = 50.8 bits (120), Expect = 3e-07
Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 8/115 (6%)
Query: 2 LSFCPLCNNMLLVSK-ADSGLYKLACGSCPYQFLIDGIEVYDRKNLPRKEVDDVLGGEGA 60
+ FC CNNML + ++ + AC +C YQ D +Y K EVD+ L A
Sbjct: 14 IRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKIT--HEVDE-LTQIIA 70
Query: 61 WDNVDQTAAQCPNH--DQCAGERAYFFQLQIRSADEPMTTFYKCV--NCGHKWRE 111
+ D T + +H +C + A FFQ A++ M +Y C +CGH+W E
Sbjct: 71 DVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
>SPAPYUG7.04c [K] KOG2691 RNA polymerase II subunit 9
Length = 113
Score = 49.7 bits (117), Expect = 7e-07
Identities = 36/112 (32%), Positives = 52/112 (46%), Gaps = 9/112 (8%)
Query: 4 FCPLCNNMLLV--SKADSGLYKLACGSCPYQFLIDGIEVYDRKNLPRKEVDDVLGGEGAW 61
+C CNNML K D L +LAC +C Y + +VY R L V++ A
Sbjct: 6 YCIECNNMLYPREDKVDRVL-RLACRNCDYSEIAATSKVY-RHELQSSNVENTTVSHDAS 63
Query: 62 DN--VDQTAAQCPNHDQCAGERAYFFQLQIRSADEPMTTFYKCVNCGHKWRE 111
+ + ++ +CP +C A F+Q R D MT Y CV+CG + E
Sbjct: 64 TDPTLPRSDKECP---RCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFAFEE 112
>At3g16980 [K] KOG2691 RNA polymerase II subunit 9
Length = 114
Score = 48.9 bits (115), Expect = 1e-06
Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 9/115 (7%)
Query: 2 LSFCPLCNNMLLVSK-ADSGLYKLACGSCPYQFLIDGIEVYDRK-NLPRKEVDDVLGGEG 59
+ FC CNN+L + + + AC +C +Q + D VY + + E +L
Sbjct: 4 MKFCRECNNILYPKEDKEQKILLYACRNCDHQEVADNSCVYRNEVHHSVSERTQILTDVA 63
Query: 60 AWDNVDQT-AAQCPNHDQCAGERAYFFQLQIRSADEPMTTFYKCVN--CGHKWRE 111
+ + +T A +C +C A FFQ R +E MT F+ C N CGH+WRE
Sbjct: 64 SDPTLPRTKAVRC---SKCQHREAVFFQATARG-EEGMTLFFVCCNPNCGHRWRE 114
>SPAC20H4.03c [K] KOG1105 Transcription elongation factor TFIIS/Cofactor of
enhancer-binding protein Sp1
Length = 293
Score = 48.1 bits (113), Expect = 2e-06
Identities = 17/35 (48%), Positives = 27/35 (76%)
Query: 76 QCAGERAYFFQLQIRSADEPMTTFYKCVNCGHKWR 110
+C ++ ++Q+Q RSADEPMTTF +C CG++W+
Sbjct: 257 KCKQKKVSYYQMQTRSADEPMTTFCECTVCGNRWK 291
>YJR063w [K] KOG2907 RNA polymerase I transcription factor TFIIS subunit
A12.2/RPA12
Length = 125
Score = 47.8 bits (112), Expect = 3e-06
Identities = 21/43 (48%), Positives = 27/43 (61%), Gaps = 3/43 (6%)
Query: 70 QCPNHDQCAGERAYFFQLQIRSADEPMTTFYKCVNCGHKWREN 112
+CP QC E + LQ+RSADE T FY C +CG+K+R N
Sbjct: 85 KCP---QCGNEEMNYHTLQLRSADEGATVFYTCTSCGYKFRTN 124
>At2g38560 [K] KOG1105 Transcription elongation factor TFIIS/Cofactor of
enhancer-binding protein Sp1
Length = 378
Score = 47.8 bits (112), Expect = 3e-06
Identities = 17/35 (48%), Positives = 25/35 (70%)
Query: 76 QCAGERAYFFQLQIRSADEPMTTFYKCVNCGHKWR 110
+C + ++Q+Q RSADEPMTT+ CVNC + W+
Sbjct: 342 RCGQRKCTYYQMQTRSADEPMTTYVTCVNCDNHWK 376
>YGL043w [K] KOG1105 Transcription elongation factor TFIIS/Cofactor of
enhancer-binding protein Sp1
Length = 309
Score = 47.4 bits (111), Expect = 3e-06
Identities = 28/103 (27%), Positives = 54/103 (52%), Gaps = 6/103 (5%)
Query: 13 LVSKADSGL-YKLACGSCPYQFLIDGIEVYDRKNLPRKEVDDVLGGEGAWD----NVDQT 67
++SK + L +K+A G +FL + D P K+ + + + ++ ++++
Sbjct: 206 VISKNNPDLKHKIANGDITPEFLAT-CDAKDLAPAPLKQKIEEIAKQNLYNAQGATIERS 264
Query: 68 AAQCPNHDQCAGERAYFFQLQIRSADEPMTTFYKCVNCGHKWR 110
+C ++ ++QLQ RSADEP+TTF C CG++W+
Sbjct: 265 VTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRWK 307
>Hs22059374_1 [K] KOG2906 RNA polymerase III subunit C11
Length = 42
Score = 46.2 bits (108), Expect = 7e-06
Identities = 22/36 (61%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 76 QCAGERAYFFQLQIRSADEPMTTFYKCVNC--GHKW 109
+C RAYF QLQ SADE M TFYKC N GH+W
Sbjct: 7 KCKHPRAYFMQLQTCSADELMITFYKCCNSQGGHRW 42
>CE03726 [K] KOG1105 Transcription elongation factor TFIIS/Cofactor of
enhancer-binding protein Sp1
Length = 308
Score = 45.8 bits (107), Expect = 1e-05
Identities = 17/35 (48%), Positives = 25/35 (70%)
Query: 76 QCAGERAYFFQLQIRSADEPMTTFYKCVNCGHKWR 110
+C + + QLQ RS+DEPMTTF C+ CG++W+
Sbjct: 272 KCGKKNCTYTQLQTRSSDEPMTTFVFCLECGNRWK 306
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.323 0.139 0.462
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,246,011
Number of Sequences: 60738
Number of extensions: 283464
Number of successful extensions: 761
Number of sequences better than 1.0e-05: 19
Number of HSP's better than 0.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 730
Number of HSP's gapped (non-prelim): 19
length of query: 112
length of database: 30,389,216
effective HSP length: 88
effective length of query: 24
effective length of database: 25,044,272
effective search space: 601062528
effective search space used: 601062528
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)