ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactVI4976   suspect: LH   R     KOG0017  General function prediction only                               FOG: Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactVI4976 1727515 1726049 -489 
         (489 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YDR261c [R] KOG0017 FOG: Transposon-encoded proteins with TYA re...    70   5e-12

>YDR261c [R] KOG0017 FOG: Transposon-encoded proteins with TYA reverse
           transcriptase integrase domains in various combinations
          Length = 562

 Score = 70.5 bits (171), Expect = 5e-12
 Identities = 93/426 (21%), Positives = 165/426 (37%), Gaps = 83/426 (19%)

Query: 41  GVNFGSMFVLEQYIFHSLF-----------SAGGGNEFDAITNQVKASNSNDTAKKLSDH 89
           G+  G   V E YI  SL+           S+   +  D  T   K    N +   L +H
Sbjct: 57  GITIGGWLVTEPYITPSLYRNATSLAKQQNSSSNISIVDEFT-LCKTLGYNTSLTLLDNH 115

Query: 90  YDSYLNRVDWNWLRSVGCTAIRLPVGYWHVKNGELLKNGEKFYSLKDVY-SKSKPWDRVK 148
           + +++   D+  +++ G   +R+P+GYW  K            +  D Y S       + 
Sbjct: 116 FKTWITEDDFEQIKTNGFNLVRIPIGYWAWKQNTDKNLYIDNITFNDPYVSDGLQLKYLN 175

Query: 149 KVISLANENKIGVLLDLHGLPGGANGDAHSGEQSCGSATFFDESSFVKSIVDNVIPFVVQ 208
             +  A + ++ V LDLHG PG  NG  +SGE+       +   +  K +   +   + Q
Sbjct: 176 NALEWAQKYELNVWLDLHGAPGSQNGFDNSGERILYGDLGWLRLNNTKELTLAIWRDMFQ 235

Query: 209 DLQSNVN---LIGLQIVNE---AQFDESGKKQKSYYE--KAVEKVRSINSTLPVVISDGW 260
              +  +   ++G+QIVNE    + D S   +  YYE    ++K ++ +     VI DG+
Sbjct: 236 TFLNKGDKSPVVGIQIVNEPLGGKIDVSDITE-MYYEAFDLLKKNQNSSDNTTFVIHDGF 294

Query: 261 -----WPQQWSDWVQE-----------KKLFTDVIIDSHVYRCFSDSDKAK----NVEKL 300
                W  + +   Q                 D+++D H Y  F+D+  A+     +E +
Sbjct: 295 QGIGHWNLELNPTYQNVSHHYFNLTGANYSSQDILVDHHHYEVFTDAQLAETQFARIENI 354

Query: 301 IQDLSSSVQFDRSKADFTVAEFS-CVIDGQSW-----------------------DKTSG 336
           I +   S+  + S     V E+S  + D  +W                       DK  G
Sbjct: 355 I-NYGDSIHKELSFHPAVVGEWSGAITDCATWLNGVGVGARYDGSYYNTTLFTTNDKPVG 413

Query: 337 -------------NRDDLVKKYGQAQTSIFQRQASWGWFFWTLQFESGDGGEWGYIPMVN 383
                        +  D V+++ +AQ + +  + + GW FW  + E  D  EW Y+ +  
Sbjct: 414 TCISQNSLADWTQDYRDRVRQFIEAQLATYSSKTT-GWIFWNWKTE--DAVEWDYLKLKE 470

Query: 384 KGAIPN 389
               P+
Sbjct: 471 ANLFPS 476


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.317    0.135    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,994,482
Number of Sequences: 60738
Number of extensions: 1446826
Number of successful extensions: 3651
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3649
Number of HSP's gapped (non-prelim): 1
length of query: 489
length of database: 30,389,216
effective HSP length: 110
effective length of query: 379
effective length of database: 23,708,036
effective search space: 8985345644
effective search space used: 8985345644
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)