ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI5111 suspect: LH R KOG0017 General function prediction only FOG: Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI5111 1773327 1774907 527
(527 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
Hs22065753 [R] KOG0017 FOG: Transposon-encoded proteins with TYA... 52 3e-06
Hs20555770_2 [R] KOG0017 FOG: Transposon-encoded proteins with T... 50 8e-06
>Hs22065753 [R] KOG0017 FOG: Transposon-encoded proteins with TYA reverse
transcriptase integrase domains in various combinations
Length = 458
Score = 51.6 bits (122), Expect = 3e-06
Identities = 35/152 (23%), Positives = 71/152 (46%), Gaps = 23/152 (15%)
Query: 159 ELFDLIMSVHVLNSHVSSKGIYNELSTFYANVTQSFCKLVTSFCSKCNESG----NKISY 214
ELFD++ H+ H + EL Y NVT+ L + C +C++ ++
Sbjct: 158 ELFDILHDTHLSIGHGGRTRMLKELQGKYGNVTKEVIVLYLTLCKQCHQKNPVPKRGLAP 217
Query: 215 KKFKHENIHANLIPLGRCHVEIFAPFDSAYQGNDNTDELKIEGKYPFVLYCRDYYSRYVW 274
K ++I + C VEI SA +G++ F+LY +D+ ++++
Sbjct: 218 KPMTFKDIDST------CQVEILDMQSSA------------DGEFKFILYYQDHSTKFII 259
Query: 275 LEPLKSVTLSDLLPVMTKLLFSMIRMPIFIDT 306
L PL++ +++ V+ +F+++ P +D+
Sbjct: 260 LRPLRTKQAHEVVSVLLD-IFTILGTPSVLDS 290
>Hs20555770_2 [R] KOG0017 FOG: Transposon-encoded proteins with TYA reverse
transcriptase integrase domains in various combinations
Length = 545
Score = 50.1 bits (118), Expect = 8e-06
Identities = 51/257 (19%), Positives = 106/257 (40%), Gaps = 22/257 (8%)
Query: 159 ELFDLIMSVHVLNSHVSSKGIYNELSTFYANVTQSFCKLVTSFCSKCNESGNKISYKKFK 218
+LFD++ + H+ H + EL Y N+T+ L + C C + +K+ K
Sbjct: 117 DLFDILHNTHLSIGHGGRTRMEKELQAKYKNITKEVIMLYLTLCKPCQQKNSKLK-KVLT 175
Query: 219 HENIHANLIPLGRCHVEIFAPFDSAYQGNDNTDELKIEGKYPFVLYCRDYYSRYVWLEPL 278
++I RC V++ +L +G+Y F+L+ +D ++ +L L
Sbjct: 176 SKSIKE---VSSRCQVDLI------------DMQLNPDGEYRFILHYQDLCTKLTFLRSL 220
Query: 279 KSVTLSDLLPVMTKLLFSMIRMPIFIDTCTLDRQDMFDVCENIARIY-KIKIGLGMNSST 337
KS +++ + +F++I P + + R+ V ++ I+ ++KI G + +
Sbjct: 221 KSKRPTEVAHALLD-IFTIIGAPSVLQSDN-GREFSSQVVSELSNIWPELKIVHGKSQTC 278
Query: 338 SFQKTGIKR---MKSLFLQHKEECLHDWNMCLKLVVSRLNQNYSDRVRGVPSDLLCSTQQ 394
Q + + K +F + W L + NQ Y ++ P + S++
Sbjct: 279 QSQSSAEQTEDIRKRIFSWMQTNNSSHWTEFLWFIQMSQNQPYHRSMQQTPCESAFSSEA 338
Query: 395 DLHKKFRTLQRNVISRL 411
L L +++ L
Sbjct: 339 KLGLSHSQLTEELVASL 355
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.318 0.135 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,967,581
Number of Sequences: 60738
Number of extensions: 1344999
Number of successful extensions: 3462
Number of sequences better than 1.0e-05: 2
Number of HSP's better than 0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3460
Number of HSP's gapped (non-prelim): 2
length of query: 527
length of database: 30,389,216
effective HSP length: 111
effective length of query: 416
effective length of database: 23,647,298
effective search space: 9837275968
effective search space used: 9837275968
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)