ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactVI5131   good          J     KOG4612  Translation, ribosomal structure and biogenesis                Mitochondrial ribosomal protein L34

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactVI5131 1782824  1783171 116  
         (116 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YDR115w [J] KOG4612 Mitochondrial ribosomal protein L34                91   3e-19
SPBC21C3.04c [J] KOG4612 Mitochondrial ribosomal protein L34           63   6e-11
Hs13027606 [J] KOG4612 Mitochondrial ribosomal protein L34             47   4e-06

>YDR115w [J] KOG4612 Mitochondrial ribosomal protein L34
          Length = 105

 Score = 90.5 bits (223), Expect = 3e-19
 Identities = 55/109 (50%), Positives = 68/109 (61%), Gaps = 10/109 (9%)

Query: 8   LLQWTSKRTLTSFSSFSPLRTLDSRLHRPLAQVNPMEITLQSQTQANGSSIFGMLFDLTQ 67
           L Q  S+R  +S SSFS L  L  +    L   N   +   S T       FG++    Q
Sbjct: 7   LCQPQSRRMFSSISSFSALSVLRPQTGMLL---NSSPLKTPSFTPLG----FGLI---GQ 56

Query: 68  RRWKSRGNTFQPSTLKRKRRVGFLARARSRSGQQILKRRKNKGRWYLTY 116
           RRWKSRGNT+QPSTLKRKR  GFLARA+S+ G +ILKRRK KGRW+L++
Sbjct: 57  RRWKSRGNTYQPSTLKRKRTFGFLARAKSKQGSKILKRRKLKGRWFLSH 105


>SPBC21C3.04c [J] KOG4612 Mitochondrial ribosomal protein L34
          Length = 108

 Score = 63.2 bits (152), Expect = 6e-11
 Identities = 30/60 (50%), Positives = 44/60 (73%), Gaps = 3/60 (5%)

Query: 57  SIFGMLFDLTQRRWKSRGNTFQPSTLKRKRRVGFLARARSRSGQQILKRRKNKGRWYLTY 116
           +IFG +    Q RWK+ GN +QPS  KRKR+ GFL+R RS +G+++L+ R+ KGR YL++
Sbjct: 52  NIFGQM---QQVRWKTYGNEYQPSNRKRKRKHGFLSRIRSVNGRRVLRDRRQKGRMYLSH 108


>Hs13027606 [J] KOG4612 Mitochondrial ribosomal protein L34
          Length = 92

 Score = 47.0 bits (110), Expect = 4e-06
 Identities = 22/50 (44%), Positives = 34/50 (68%)

Query: 67  QRRWKSRGNTFQPSTLKRKRRVGFLARARSRSGQQILKRRKNKGRWYLTY 116
           Q R K+RGN +QPS +KRK + G++ R  + +G Q++ RR  KGR  L++
Sbjct: 43  QARGKARGNEYQPSNIKRKNKHGWVRRLSTPAGVQVILRRMLKGRKSLSH 92


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.323    0.132    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,258,511
Number of Sequences: 60738
Number of extensions: 214850
Number of successful extensions: 723
Number of sequences better than 1.0e-05: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 719
Number of HSP's gapped (non-prelim): 3
length of query: 116
length of database: 30,389,216
effective HSP length: 92
effective length of query: 24
effective length of database: 24,801,320
effective search space: 595231680
effective search space used: 595231680
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)