ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactVI5136   suspect: LH   J     KOG1569  Translation, ribosomal structure and biogenesis                50S ribosomal protein L1

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactVI5136 1784297 1783500 -266 
         (266 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YDR116c [J] KOG1569 50S ribosomal protein L1                          332   3e-91
At3g63490 [J] KOG1569 50S ribosomal protein L1                         72   8e-13

>YDR116c [J] KOG1569 50S ribosomal protein L1
          Length = 285

 Score =  332 bits (852), Expect = 3e-91
 Identities = 155/242 (64%), Positives = 210/242 (86%)

Query: 25  LTKEQLRKRELRKMVQRRLQAKTPASDHPLYMPVSRALRYLRAIEVGQPASQQTITLTTL 84
           LTK+Q +KREL+++VQR+ +AK PA+  PLYMPV++ALRYLRA EVG+P SQQTI LTTL
Sbjct: 44  LTKDQAKKRELKRLVQRKAEAKRPATASPLYMPVTKALRYLRAAEVGRPQSQQTINLTTL 103

Query: 85  VVAERGVPPLTGNVSFGKPLKDVKVAVFTNDEAQAALMKDKYSVHLVGGSDLVSQIKAGE 144
           VV ERG  PL+G+V+F KPL+ +K+A FTNDE++   +++KY  HL+GG+DLV++IK+GE
Sbjct: 104 VVGERGTAPLSGSVTFPKPLRYIKIAAFTNDESKLEELREKYPNHLIGGADLVAKIKSGE 163

Query: 145 VSIDFDKAFATPDIVPQLASQVGRILGPRGLLPTAKKGTVAEDLEPLIKDSMSSVPFRQR 204
           +S+DFDKAFATPDIVP L SQV RILGPRG+LP+ KKGTV++D+  L+++S+ S+PFRQR
Sbjct: 164 ISVDFDKAFATPDIVPALQSQVARILGPRGVLPSVKKGTVSDDISSLLQESLGSMPFRQR 223

Query: 205 GNSISLGVAKTHFTDKEVLENLLATQKAFKQSITNQQTKKPSILSQTTLTSTHGPGIVID 264
           GNSIS+GV K +FTD+E+L+N+++ + AFK ++ NQ++KKP+ILS+TTL+STHGPGIVID
Sbjct: 224 GNSISIGVGKCYFTDREILQNIISARAAFKTAVDNQKSKKPNILSKTTLSSTHGPGIVID 283

Query: 265 FA 266
           FA
Sbjct: 284 FA 285


>At3g63490 [J] KOG1569 50S ribosomal protein L1
          Length = 346

 Score = 72.0 bits (175), Expect = 8e-13
 Identities = 50/153 (32%), Positives = 86/153 (55%), Gaps = 15/153 (9%)

Query: 115 DEAQAALMKDKYSVHLVGGSDLVSQIKAGEVSIDFDKAFATPDIVPQLASQVGRILGPRG 174
           DEA++A         +VG  DL+ QIK G   ++FDK  A+PD++ ++A  +G+ILGPRG
Sbjct: 193 DEAKSA------GADIVGSDDLIEQIKGG--FMEFDKLIASPDMMVKVAG-LGKILGPRG 243

Query: 175 LLPTAKKGTVAEDLEPLIKD-SMSSVPFR-QRGNSISLGVAKTHFTDKEVLENLLATQKA 232
           L+P  K GTV  ++   I++     V FR  +   + +   K +FT++++L N LA  K+
Sbjct: 244 LMPNPKAGTVTANIPQAIEEFKKGKVEFRADKTGIVHIPFGKVNFTEEDLLINFLAAVKS 303

Query: 233 FKQSITNQQTKKPSILSQTT-LTSTHGPGIVID 264
            +   TN+      +  ++  + S+ GP I ++
Sbjct: 304 VE---TNKPKGAKGVYWKSAHICSSMGPSIKLN 333


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.317    0.133    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,198,424
Number of Sequences: 60738
Number of extensions: 554446
Number of successful extensions: 1752
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1749
Number of HSP's gapped (non-prelim): 2
length of query: 266
length of database: 30,389,216
effective HSP length: 104
effective length of query: 162
effective length of database: 24,072,464
effective search space: 3899739168
effective search space used: 3899739168
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)