ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI5146 suspect: LH DO KOG4640 Cell cycle control, cell division, chromosome partitioning Anaphase-promoting complex (APC), subunit 4 r_klactVI5146 suspect: LH DO KOG4640 Posttranslational modification, protein turnover, chaperones Anaphase-promoting complex (APC), subunit 4
Only best alignment is shown:

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactVI5146 1786659  1788671 671  
         (671 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YDR118w [DO] KOG4640 Anaphase-promoting complex (APC) subunit 4        65   4e-10

>YDR118w [DO] KOG4640 Anaphase-promoting complex (APC) subunit 4
          Length = 652

 Score = 64.7 bits (156), Expect = 4e-10
 Identities = 56/260 (21%), Positives = 115/260 (43%), Gaps = 18/260 (6%)

Query: 93  LTFIPKGAKTKCILCDNLVPSDDRYSLSDGNLLNSMPKLNKWDMIKNELDNELILNSELG 152
           L + P      C + D+L P   R+ + D   +N +P      + +   +++L  N +L 
Sbjct: 103 LRYEPNNRDFACNIIDDL-PKLIRF-VKDSKRINIVPYTQPNSLWRGPDEDDLDSNEKL- 159

Query: 153 KKKPIDIFMAIDSKTNKLILSIEGTLNIKVG-EKLKLPKDIKRIIKVSSGKYMCLGKDWS 211
                D+ +  +   +K+ +   G   + +  + ++    +K IIKV  G Y C  +D +
Sbjct: 160 -----DVHVVFNEGNDKITVFFNGDYAVFLSVDNIENENSLKSIIKVQDGFYQCFYEDGT 214

Query: 212 YQVLDL-TFLQDPNIYKLIKTTQEYSALLRYLKQLHRHLRMKLTEPYFEFVETLLKEEH- 269
            Q L+L   LQ  +   L+        L+ Y+      +  +L  PY +FV+ L  E + 
Sbjct: 215 VQTLNLGPLLQSKSSVNLLNYIMVIKELIGYMLTHLEFINRELATPYLDFVKRLCDEAYG 274

Query: 270 ----KNALQELFYIGVTKLEVMEEL-HEVQLQTFRLDKWSALSNDLCSNSIGLMVACTIP 324
               K+ L+ LF +G    ++ + L + V  + F+  +W  L  +    ++ ++    +P
Sbjct: 275 YGKLKSELEALFLLGEISCDLEDWLCNSVGEKNFK--RWKYLGCEAYQKTVQILTLIFVP 332

Query: 325 LLERMIVLAASIEALCEAIT 344
             ER+I+    + A+ +A +
Sbjct: 333 ACERIIIYVEKLRAILQAFS 352


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.318    0.135    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,256,418
Number of Sequences: 60738
Number of extensions: 1668328
Number of successful extensions: 4525
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4523
Number of HSP's gapped (non-prelim): 1
length of query: 671
length of database: 30,389,216
effective HSP length: 113
effective length of query: 558
effective length of database: 23,525,822
effective search space: 13127408676
effective search space used: 13127408676
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)