ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactVI5181   suspect: LH   K     KOG0870  Transcription                                                  DNA polymerase epsilon, subunit D

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactVI5181 1798814  1799461 216  
         (216 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YDR121w [K] KOG0870 DNA polymerase epsilon subunit D                  150   2e-36
SPBC3D6.09 [K] KOG0870 DNA polymerase epsilon subunit D                52   8e-07

>YDR121w [K] KOG0870 DNA polymerase epsilon subunit D
          Length = 196

 Score =  150 bits (378), Expect = 2e-36
 Identities = 74/138 (53%), Positives = 103/138 (74%), Gaps = 6/138 (4%)

Query: 1   MPPKGWRKDSEGNYPNTSYIKEQEKISIDDLLFPKSIITSLAKESLQNAFQKGEEERRIT 60
           MPPKGWRKD++GNYP TSYIKEQE I+I DLLFPKS I +LA+E  Q + +K      + 
Sbjct: 1   MPPKGWRKDAQGNYPTTSYIKEQENITIQDLLFPKSTIVNLAREVPQQSGKK------LL 54

Query: 61  VSKDAALAMQRSATVFVNHLLMFARMNAKDSNRKSCNDQDIMAALDTLGLGALESILTGK 120
           ++KDA+LA+QR ATVFVNHLL+FAR  AK  ++KSC+  D+++ALD +G  AL+  +  K
Sbjct: 55  INKDASLALQRGATVFVNHLLLFAREIAKSQDKKSCSVDDVLSALDHIGHSALKGPVRDK 114

Query: 121 MQEYQEAILWKKQNKVNN 138
           + EYQ A+  +K+ K+++
Sbjct: 115 LDEYQAAVEQRKKEKLDS 132


>SPBC3D6.09 [K] KOG0870 DNA polymerase epsilon subunit D
          Length = 210

 Score = 51.6 bits (122), Expect = 8e-07
 Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 9/112 (8%)

Query: 21  KEQEKISIDDLLFPKSIITSLAKESLQNAFQKGEEERRITVSKDAALAMQRSATVFVNHL 80
           K +E   +DDL  P+SII  L K         G    +  V K+A  AM  SAT+FV+ L
Sbjct: 5   KSKETSELDDLALPRSIIMRLVK---------GVLPEKSLVQKEALKAMINSATLFVSFL 55

Query: 81  LMFARMNAKDSNRKSCNDQDIMAALDTLGLGALESILTGKMQEYQEAILWKK 132
              +   A ++NRK    QD++ ALD +        L   ++ Y+ A+  K+
Sbjct: 56  TSASGEIATNNNRKILMPQDVLNALDEIEYPEFSKTLKKHLEAYELALKEKR 107


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.309    0.126    0.344 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,955,940
Number of Sequences: 60738
Number of extensions: 356777
Number of successful extensions: 768
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 765
Number of HSP's gapped (non-prelim): 2
length of query: 216
length of database: 30,389,216
effective HSP length: 102
effective length of query: 114
effective length of database: 24,193,940
effective search space: 2758109160
effective search space used: 2758109160
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)