ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactVI5412   suspect: LH   A     KOG1994  RNA processing and modification                                Predicted RNA binding protein, contains G-patch and Zn-finger domains

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactVI5412 1884093 1883233 -287 
         (287 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YLR271w [A] KOG1994 Predicted RNA binding protein contains G-pat...   142   4e-34
CE13175 [A] KOG1994 Predicted RNA binding protein contains G-pat...    54   3e-07

>YLR271w [A] KOG1994 Predicted RNA binding protein contains G-patch and
           Zn-finger domains
          Length = 274

 Score =  142 bits (359), Expect = 4e-34
 Identities = 84/233 (36%), Positives = 120/233 (51%), Gaps = 31/233 (13%)

Query: 86  LPKALKMMKSMGYNIDETAESGSKRTVGMVPVERKLDRIGIRT-KPALSETEDVANVDD- 143
           +P+  KMM++MGY   ET  S        + VE    R GIR  KP  S   D+   +  
Sbjct: 42  MPRGYKMMENMGYKEGETLGSNESALKEPIKVEINTKRRGIRAEKPDPSTMNDMQMSEQR 101

Query: 144 FRERINNEKNTERKLHLLKHMQKLAFTLTGDVDNFYSSSDPRDFNVLWRSYVIELLQNLT 203
           F +R +  KN +R   +   +QK+AF + GD D +    DPRDFNVLWRSYV++L + + 
Sbjct: 102 FIKRESEMKNNKRLKKIWYRIQKVAFEMMGDSDLYNPGEDPRDFNVLWRSYVMQLNEEVA 161

Query: 204 HKSLGNESEDDGHNHDHPEQSSNDV-----------------------------IPVDGE 234
              L N S +D  + ++     N+                              I  D E
Sbjct: 162 KNDLNNHSNNDNEDKNNMIPMVNESLEASPAIKGEKFGRPSTLIDCDTSIIGSRITKDTE 221

Query: 235 LEMLQQLTIDEKIKKLNTFLRTELRYCFYCGNKYKDDADLFAHCPGFTEEDHQ 287
           L  L++L+I+++I KLN FLR+E  YCF+CG KYKD+ DL+ HCPG  E+DH+
Sbjct: 222 LAELEELSIEKRITKLNIFLRSEKYYCFFCGIKYKDEGDLYEHCPGVNEDDHK 274


>CE13175 [A] KOG1994 Predicted RNA binding protein contains G-patch and
           Zn-finger domains
          Length = 289

 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 52/258 (20%), Positives = 107/258 (41%), Gaps = 30/258 (11%)

Query: 32  SHAKSTASERDQASVEDTHEEPWEENYLTMEIEGLHGDKIGPLLRASDIPLAKRLPKALK 91
           SHA+     RD+A  +    E   + +  M   G          R  +I + + +   +K
Sbjct: 54  SHAEREKERRDEALAKPISHE--SKGFALMAKMGFKPGMTLGKQREDEIRITEPIGVDIK 111

Query: 92  M-MKSMGYNIDETAESGSKRTVGMVPVERKLDRIGIRTKPALSETEDVANVDDFRERINN 150
              K +G+ ++   E   +           ++ +  + K   ++ E++  +DD+ +R   
Sbjct: 112 ANRKGLGHEVEAVQERNER-----------VEAVMQKMKEQAAKHEEL--IDDYSKRRKL 158

Query: 151 EKNTERKLHLLKHMQKLAFTLTGDVDNFYSSSDPRDFNVLWRSYVIELLQNLT-HKSLGN 209
           + N+++ +  ++  +K+      ++D+      P   +  WRSY +   +  + HK +  
Sbjct: 159 DANSKQLVKDIRSCRKVC----EELDHRIGKKVP-SVSWFWRSYKVAQEETTSYHKKV-- 211

Query: 210 ESEDDGHNHDHPEQSSNDVIPVDGELEMLQQLTI-DEKIKKLNTFLRTELRYCFYCGNKY 268
           E ED+ + +     S+    P D   +      I +E +  +N +LR    YC +CG  +
Sbjct: 212 EKEDEEYKY-----SNGLAAPEDPNYDFTMSTEILEEALSTINNYLRDGHFYCIWCGANF 266

Query: 269 KDDADLFAHCPGFTEEDH 286
               D+  HCPG T   H
Sbjct: 267 SSPEDMIEHCPGSTRRAH 284


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.314    0.133    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,868,249
Number of Sequences: 60738
Number of extensions: 735892
Number of successful extensions: 2013
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2010
Number of HSP's gapped (non-prelim): 3
length of query: 287
length of database: 30,389,216
effective HSP length: 105
effective length of query: 182
effective length of database: 24,011,726
effective search space: 4370134132
effective search space used: 4370134132
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)