ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI5444 suspect: LH A KOG4689 RNA processing and modification Predicted RNase
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI5444 1893769 1892429 -447
(447 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YOR166c [A] KOG4689 Predicted RNase 253 3e-67
SPCC24B10.15 [A] KOG4689 Predicted RNase 84 4e-16
>YOR166c [A] KOG4689 Predicted RNase
Length = 458
Score = 253 bits (647), Expect = 3e-67
Identities = 141/336 (41%), Positives = 197/336 (57%), Gaps = 11/336 (3%)
Query: 109 DQISMSQNPTKKSVFVVDTNFIVSHLNTLEQLRLLSTQYNHQILIPTTVIQELDGLXXXX 168
D + + PT K+ FVVDTNFI+SHLNTLE+LR LS+ Y+H I++PTTVIQELDGL
Sbjct: 118 DDLPLLNPPTLKTAFVVDTNFIISHLNTLEKLRSLSSTYHHLIIVPTTVIQELDGLKKSP 177
Query: 169 XXXXXXXXXXDYQN---LGKLARAANDWIYGHLANLESSVAVQKLNQRHKYNLVKDDAIL 225
+ ++ +G LAR NDWIY +LANL+S + QKL Q +KDD+IL
Sbjct: 178 DIARDNDDTTNQEHDRTIGTLARWGNDWIYKNLANLDSGLIGQKLKQSLNPGSLKDDSIL 237
Query: 226 ECCLYFANTLHNFVILLSNDKNLCLRALTEQILTVSYRKGMSANLIASKVYQEKVAK--- 282
+CCLYF L+ FVILLSNDKNLC +ALTE ILTVS+RK M A +IA + Y+E +
Sbjct: 238 DCCLYFKEILNCFVILLSNDKNLCTKALTEDILTVSFRKNMDAKIIAMRAYEENQLRFAN 297
Query: 283 -NGSDINPQYAQQIGYSISDRDIQHHEKFGEMFQELAVQAYHEFLATVIKAVDHTMIDIY 341
S +N + Q + S I E F +++ + + T+ A+DHT+ Y
Sbjct: 298 LRDSTVN-NFDQNV---TSYAHIPGIETPPLQFDKVSQNVFEQVKETIFFAIDHTLRKEY 353
Query: 342 GEDLSFTSYDKDEMIDFVTVGKTVHNHYTAVFSEFFKGSPFKKNDWKHLPDELTAIPLNP 401
GED+ F Y+ D++ ++ + +VFSE F S KKN+WK LP L + P N
Sbjct: 354 GEDIGFIDYNPDKLTTIENASNYIYLFWVSVFSELFTCSKIKKNEWKSLPTVLKSKPTNL 413
Query: 402 IYLKTFVTFWSNVIEYLYPKEFSVEGRASRSFINDW 437
L+TF FW V+ +L+ K + E ++ I++W
Sbjct: 414 NDLRTFEQFWETVLHFLFSKFTNEEKQSLEKQIHEW 449
>SPCC24B10.15 [A] KOG4689 Predicted RNase
Length = 462
Score = 84.0 bits (206), Expect = 4e-16
Identities = 55/182 (30%), Positives = 93/182 (50%), Gaps = 17/182 (9%)
Query: 112 SMSQNPTKKS----VFVVDTNFIVSHLNTLEQLRLLSTQYNHQILI--PTTVIQELDGLX 165
S++ P + S +FV+DTNF++SHL+ + L T ++++ P TV+QELDGL
Sbjct: 54 SLASKPARYSKPLGLFVLDTNFLLSHLSLCQNLIEFLTARCPRLVVVLPWTVLQELDGLK 113
Query: 166 XXXXXXXXXXXXXDYQNLGKLARAANDWIYGHLANLESSVAVQKLNQRHKYNLVKDDAIL 225
G LAR A++++ + SS+ QK+++ DDAIL
Sbjct: 114 SESSST-----------CGYLARQAHNFLLQCFRSNVSSLRGQKVHEHCSSTEKGDDAIL 162
Query: 226 ECCLYFANTLHNFVILLSNDKNLCLRALTEQILTVSYRKGMSANLIASKVYQEKVAKNGS 285
+CC+Y+ +LLS+DKNL ++A I ++S+ KG+ A I + + N
Sbjct: 163 DCCIYYQEEKLIPAVLLSDDKNLSIKAAVHHIQSLSFSKGLEAASIVQTSFPSAFSSNSE 222
Query: 286 DI 287
++
Sbjct: 223 NL 224
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.317 0.134 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,732,546
Number of Sequences: 60738
Number of extensions: 1065571
Number of successful extensions: 2424
Number of sequences better than 1.0e-05: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2417
Number of HSP's gapped (non-prelim): 3
length of query: 447
length of database: 30,389,216
effective HSP length: 110
effective length of query: 337
effective length of database: 23,708,036
effective search space: 7989608132
effective search space used: 7989608132
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)