ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI5448 good J KOG3502 Translation, ribosomal structure and biogenesis 40S ribosomal protein S28
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI5448 1894780 1894580 -67
(67 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YLR264w [J] KOG3502 40S ribosomal protein S28 125 1e-29
YOR167c [J] KOG3502 40S ribosomal protein S28 124 2e-29
SPCC285.15c [J] KOG3502 40S ribosomal protein S28 111 2e-25
SPAC25G10.06 [J] KOG3502 40S ribosomal protein S28 111 2e-25
Hs4506715 [J] KOG3502 40S ribosomal protein S28 100 4e-22
CE21842 [J] KOG3502 40S ribosomal protein S28 91 4e-19
7301884 [J] KOG3502 40S ribosomal protein S28 86 7e-18
At5g03850 [J] KOG3502 40S ribosomal protein S28 86 1e-17
At3g10090 [J] KOG3502 40S ribosomal protein S28 86 1e-17
At5g64140 [J] KOG3502 40S ribosomal protein S28 85 2e-17
7291066 [J] KOG3502 40S ribosomal protein S28 80 7e-16
Hs22043713 [J] KOG3502 40S ribosomal protein S28 63 6e-11
Hs18549817 [J] KOG3502 40S ribosomal protein S28 63 6e-11
Hs22041763_1 [J] KOG3502 40S ribosomal protein S28 63 6e-11
ECU09g1275 [J] KOG3502 40S ribosomal protein S28 57 5e-09
>YLR264w [J] KOG3502 40S ribosomal protein S28
Length = 67
Score = 125 bits (313), Expect = 1e-29
Identities = 64/67 (95%), Positives = 66/67 (97%)
Query: 1 MDTKTPVTLAKVIKVLGRTGSRGGVTQVRVEFLEDTTRTIVRNVKGPVREGDILVLMESE 60
MD+KTPVTLAKVIKVLGRTGSRGGVTQVRVEFLEDT+RTIVRNVKGPVRE DILVLMESE
Sbjct: 1 MDSKTPVTLAKVIKVLGRTGSRGGVTQVRVEFLEDTSRTIVRNVKGPVRENDILVLMESE 60
Query: 61 REARRLR 67
REARRLR
Sbjct: 61 REARRLR 67
>YOR167c [J] KOG3502 40S ribosomal protein S28
Length = 67
Score = 124 bits (312), Expect = 2e-29
Identities = 64/67 (95%), Positives = 65/67 (96%)
Query: 1 MDTKTPVTLAKVIKVLGRTGSRGGVTQVRVEFLEDTTRTIVRNVKGPVREGDILVLMESE 60
MD KTPVTLAKVIKVLGRTGSRGGVTQVRVEFLEDT+RTIVRNVKGPVRE DILVLMESE
Sbjct: 1 MDNKTPVTLAKVIKVLGRTGSRGGVTQVRVEFLEDTSRTIVRNVKGPVRENDILVLMESE 60
Query: 61 REARRLR 67
REARRLR
Sbjct: 61 REARRLR 67
>SPCC285.15c [J] KOG3502 40S ribosomal protein S28
Length = 68
Score = 111 bits (277), Expect = 2e-25
Identities = 55/65 (84%), Positives = 62/65 (94%)
Query: 3 TKTPVTLAKVIKVLGRTGSRGGVTQVRVEFLEDTTRTIVRNVKGPVREGDILVLMESERE 62
+K PV LAKVIKVLGRTGSRGGVTQVRVEF++DT+R+I+RNVKGPVRE DILVL+ESERE
Sbjct: 4 SKVPVKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDILVLLESERE 63
Query: 63 ARRLR 67
ARRLR
Sbjct: 64 ARRLR 68
>SPAC25G10.06 [J] KOG3502 40S ribosomal protein S28
Length = 68
Score = 111 bits (277), Expect = 2e-25
Identities = 55/65 (84%), Positives = 62/65 (94%)
Query: 3 TKTPVTLAKVIKVLGRTGSRGGVTQVRVEFLEDTTRTIVRNVKGPVREGDILVLMESERE 62
+K PV LAKVIKVLGRTGSRGGVTQVRVEF++DT+R+I+RNVKGPVRE DILVL+ESERE
Sbjct: 4 SKVPVKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDILVLLESERE 63
Query: 63 ARRLR 67
ARRLR
Sbjct: 64 ARRLR 68
>Hs4506715 [J] KOG3502 40S ribosomal protein S28
Length = 69
Score = 100 bits (249), Expect = 4e-22
Identities = 50/69 (72%), Positives = 60/69 (86%), Gaps = 2/69 (2%)
Query: 1 MDTKT--PVTLAKVIKVLGRTGSRGGVTQVRVEFLEDTTRTIVRNVKGPVREGDILVLME 58
MDT P+ LA+V KVLGRTGS+G TQVRVEF++DT+R+I+RNVKGPVREGD+L L+E
Sbjct: 1 MDTSRVQPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLTLLE 60
Query: 59 SEREARRLR 67
SEREARRLR
Sbjct: 61 SEREARRLR 69
>CE21842 [J] KOG3502 40S ribosomal protein S28
Length = 65
Score = 90.5 bits (223), Expect = 4e-19
Identities = 46/62 (74%), Positives = 54/62 (86%), Gaps = 1/62 (1%)
Query: 7 VTLAKVIKVLGRTGSRGGVTQVRVEFLED-TTRTIVRNVKGPVREGDILVLMESEREARR 65
+TLA+V KV+GRTGS+G TQVRVEF+ D R+I+RNVKGPVREGDIL L+ESEREARR
Sbjct: 4 LTLARVTKVIGRTGSQGQCTQVRVEFINDQNNRSIIRNVKGPVREGDILTLLESEREARR 63
Query: 66 LR 67
LR
Sbjct: 64 LR 65
>7301884 [J] KOG3502 40S ribosomal protein S28
Length = 64
Score = 86.3 bits (212), Expect = 7e-18
Identities = 42/58 (72%), Positives = 51/58 (87%)
Query: 10 AKVIKVLGRTGSRGGVTQVRVEFLEDTTRTIVRNVKGPVREGDILVLMESEREARRLR 67
A+V+++LGRTGS+G TQVRVEFL D +R I+RNVKGPVR GDIL L+E+EREARRLR
Sbjct: 7 ARVVEILGRTGSQGQCTQVRVEFLGDQSRQIIRNVKGPVRVGDILSLLETEREARRLR 64
>At5g03850 [J] KOG3502 40S ribosomal protein S28
Length = 64
Score = 85.5 bits (210), Expect = 1e-17
Identities = 45/58 (77%), Positives = 51/58 (87%), Gaps = 1/58 (1%)
Query: 10 AKVIKVLGRTGSRGGVTQVRVEFLEDTTRTIVRNVKGPVREGDILVLMESEREARRLR 67
A V+KV+GRTGSRG VTQVRV+F D+ R I+RNVKGPVREGDIL L+ESEREARRLR
Sbjct: 8 AVVVKVMGRTGSRGQVTQVRVKFT-DSDRYIMRNVKGPVREGDILTLLESEREARRLR 64
>At3g10090 [J] KOG3502 40S ribosomal protein S28
Length = 64
Score = 85.5 bits (210), Expect = 1e-17
Identities = 45/58 (77%), Positives = 51/58 (87%), Gaps = 1/58 (1%)
Query: 10 AKVIKVLGRTGSRGGVTQVRVEFLEDTTRTIVRNVKGPVREGDILVLMESEREARRLR 67
A V+KV+GRTGSRG VTQVRV+F D+ R I+RNVKGPVREGDIL L+ESEREARRLR
Sbjct: 8 AVVVKVMGRTGSRGQVTQVRVKFT-DSDRYIMRNVKGPVREGDILTLLESEREARRLR 64
>At5g64140 [J] KOG3502 40S ribosomal protein S28
Length = 64
Score = 85.1 bits (209), Expect = 2e-17
Identities = 44/58 (75%), Positives = 51/58 (87%), Gaps = 1/58 (1%)
Query: 10 AKVIKVLGRTGSRGGVTQVRVEFLEDTTRTIVRNVKGPVREGDILVLMESEREARRLR 67
A V+KV+GRTGSRG VTQVRV+F D+ R I+RNVKGPVREGD+L L+ESEREARRLR
Sbjct: 8 AVVVKVMGRTGSRGQVTQVRVKFT-DSDRFIMRNVKGPVREGDVLTLLESEREARRLR 64
>7291066 [J] KOG3502 40S ribosomal protein S28
Length = 103
Score = 79.7 bits (195), Expect = 7e-16
Identities = 39/55 (70%), Positives = 46/55 (82%)
Query: 6 PVTLAKVIKVLGRTGSRGGVTQVRVEFLEDTTRTIVRNVKGPVREGDILVLMESE 60
PV A+V+KVLGRTGS+G TQV+VEFL + R I+RNVKGPVREGDIL L+ESE
Sbjct: 4 PVVWARVMKVLGRTGSQGQCTQVKVEFLGEQNRQIIRNVKGPVREGDILTLLESE 58
>Hs22043713 [J] KOG3502 40S ribosomal protein S28
Length = 106
Score = 63.2 bits (152), Expect = 6e-11
Identities = 29/43 (67%), Positives = 38/43 (87%)
Query: 6 PVTLAKVIKVLGRTGSRGGVTQVRVEFLEDTTRTIVRNVKGPV 48
P+ LA+V KVLGRTGS+G TQVRV+F++ T+R+I+RNVKGPV
Sbjct: 8 PIKLARVTKVLGRTGSQGQCTQVRVKFMDVTSRSIIRNVKGPV 50
>Hs18549817 [J] KOG3502 40S ribosomal protein S28
Length = 96
Score = 63.2 bits (152), Expect = 6e-11
Identities = 33/60 (55%), Positives = 46/60 (76%), Gaps = 3/60 (5%)
Query: 7 VTLAKVIKVLGRTGSRGGVTQVRVEFLEDTTRTIVRNVKGPVREGDILVLMESEREARRL 66
++LA+V KVLGRT S+G Q EF+EDT+ +I+ +VK P+R+G +L L+ESEREA RL
Sbjct: 39 LSLARVTKVLGRTSSQG---QCMREFMEDTSHSIIHSVKDPMRKGYVLTLLESEREAWRL 95
>Hs22041763_1 [J] KOG3502 40S ribosomal protein S28
Length = 188
Score = 63.2 bits (152), Expect = 6e-11
Identities = 29/43 (67%), Positives = 38/43 (87%)
Query: 6 PVTLAKVIKVLGRTGSRGGVTQVRVEFLEDTTRTIVRNVKGPV 48
P+ LA+V KVLGRTGS+G TQVRV+F++ T+R+I+RNVKGPV
Sbjct: 8 PIKLARVTKVLGRTGSQGQCTQVRVKFMDVTSRSIIRNVKGPV 50
>ECU09g1275 [J] KOG3502 40S ribosomal protein S28
Length = 65
Score = 57.0 bits (136), Expect = 5e-09
Identities = 31/57 (54%), Positives = 40/57 (69%), Gaps = 1/57 (1%)
Query: 11 KVIKVLGRTGSRGGVTQVRVEFLEDTTRTIVRNVKGPVREGDILVLMESEREARRLR 67
+V VLGRTG G +TQV++E + + RTI R VKGPV GDI+ ++E ERE RR R
Sbjct: 10 EVTHVLGRTGGSGLLTQVKMELMHNK-RTIQRAVKGPVAVGDIIEILECEREHRRTR 65
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.319 0.137 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,165,806
Number of Sequences: 60738
Number of extensions: 88363
Number of successful extensions: 209
Number of sequences better than 1.0e-05: 15
Number of HSP's better than 0.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 189
Number of HSP's gapped (non-prelim): 15
length of query: 67
length of database: 30,389,216
effective HSP length: 43
effective length of query: 24
effective length of database: 27,777,482
effective search space: 666659568
effective search space used: 666659568
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)