ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI5464.1 suspect: Pn TO KOG3288 Posttranslational modification, protein turnover, chaperones OTU-like cysteine protease
r_klactVI5464.1 suspect: Pn TO KOG3288 Signal transduction mechanisms OTU-like cysteine protease
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI5464.1 1900703 1900410 -98
(98 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YFL044c [TO] KOG3288 OTU-like cysteine protease 29 0.97
YCR032w [TU] KOG1786 Lysosomal trafficking regulator LYST and re... 28 2.8
Hs4507857 [O] KOG1863 Ubiquitin carboxyl-terminal hydrolase 28 2.8
CE22421 [O] KOG1695 Glutathione S-transferase 27 4.8
CE22420 [O] KOG1695 Glutathione S-transferase 27 4.8
CE28961 [R] KOG2489 Transmembrane protein 26 8.2
At5g48400 [PET] KOG1052 Glutamate-gated kainate-type ion channel... 26 8.2
7290355 [K] KOG4501 Transcription coactivator complex P100 compo... 26 8.2
>YFL044c [TO] KOG3288 OTU-like cysteine protease
Length = 301
Score = 29.3 bits (64), Expect = 0.97
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 1 MHYDKLGYLDISSFSTVFQGNDPVQDDLFICAIRVQGEI 39
+HYD L ++ F TVF N P DD+ A+++ +
Sbjct: 221 IHYDSL---TMNEFKTVFNKNQPESDDVLTAALQLASNL 256
>YCR032w [TU] KOG1786 Lysosomal trafficking regulator LYST and related BEACH
and WD40 repeat proteins
Length = 2167
Score = 27.7 bits (60), Expect = 2.8
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 12 SSFSTVFQGNDPVQDDLFICAIRVQGEITNSHGLESADFLSSLFF 56
S F++VF N+ + D I V+GEI+N + L S + L+ F
Sbjct: 1538 SKFTSVFSANNSLIDGFEISKKWVRGEISNFYYLLSINILAGRSF 1582
>Hs4507857 [O] KOG1863 Ubiquitin carboxyl-terminal hydrolase
Length = 1102
Score = 27.7 bits (60), Expect = 2.8
Identities = 12/27 (44%), Positives = 19/27 (69%)
Query: 64 LCTVHDPWRVLYNAVDVVFSDRTLVHD 90
L T + +R LY+ VDV+F D+T+ +D
Sbjct: 780 LPTAKEYFRDLYHRVDVIFCDKTIPND 806
>CE22421 [O] KOG1695 Glutathione S-transferase
Length = 210
Score = 26.9 bits (58), Expect = 4.8
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 69 DPWRVLYNAVDVVFSDRTLVHDNAVWVNIR 98
+P R+L++ V F D ++H + W I+
Sbjct: 16 EPARILFHLAGVPFEDIRIIHGDGTWEQIK 45
>CE22420 [O] KOG1695 Glutathione S-transferase
Length = 209
Score = 26.9 bits (58), Expect = 4.8
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 69 DPWRVLYNAVDVVFSDRTLVHDNAVWVNIR 98
+P R+L++ V F D L H + W I+
Sbjct: 16 EPARILFHLAGVPFEDNRLTHGDGSWEKIK 45
>CE28961 [R] KOG2489 Transmembrane protein
Length = 566
Score = 26.2 bits (56), Expect = 8.2
Identities = 13/46 (28%), Positives = 23/46 (49%), Gaps = 1/46 (2%)
Query: 40 TNSHGLESADFLSSLFFFHIEFRLLCTVHDPWRV-LYNAVDVVFSD 84
T+++G+ + FL L + ++L H PWR +Y A + D
Sbjct: 436 TSANGVYAFGFLFMLPQLFVNYKLKSVAHLPWRAFMYKAFNTFIDD 481
>At5g48400 [PET] KOG1052 Glutamate-gated kainate-type ion channel receptor
subunit GluR5 and related subunits
Length = 867
Score = 26.2 bits (56), Expect = 8.2
Identities = 10/31 (32%), Positives = 18/31 (57%)
Query: 55 FFFHIEFRLLCTVHDPWRVLYNAVDVVFSDR 85
F F + L+ + + W +L N+V++ FS R
Sbjct: 801 FAFALAVLLILWLRERWEILVNSVNIYFSQR 831
>7290355 [K] KOG4501 Transcription coactivator complex P100 component
Length = 735
Score = 26.2 bits (56), Expect = 8.2
Identities = 12/43 (27%), Positives = 21/43 (47%)
Query: 29 FICAIRVQGEITNSHGLESADFLSSLFFFHIEFRLLCTVHDPW 71
++C + G + + LE F ++ F +EF L T H+ W
Sbjct: 53 YLCMLSSYGRLKSGAALEEWTFAANNFRGDMEFLLSLTQHEFW 95
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.329 0.143 0.455
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,910,917
Number of Sequences: 60738
Number of extensions: 199568
Number of successful extensions: 524
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 516
Number of HSP's gapped (non-prelim): 9
length of query: 98
length of database: 30,389,216
effective HSP length: 74
effective length of query: 24
effective length of database: 25,894,604
effective search space: 621470496
effective search space used: 621470496
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)