ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactVI5481   suspect: LH   A     KOG0108  RNA processing and modification                                mRNA cleavage and polyadenylation factor I complex, subunit RNA15

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactVI5481 1905477  1906718 414  
         (414 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YGR156w [A] KOG0108 mRNA cleavage and polyadenylation factor I c...   219   6e-57

>YGR156w [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
           subunit RNA15
          Length = 425

 Score =  219 bits (558), Expect = 6e-57
 Identities = 124/306 (40%), Positives = 177/306 (57%), Gaps = 52/306 (16%)

Query: 7   DPRTRKSRHELTPHNLSSTIRFTDIPAQWNKDNFTSVITGSGYIVDVREKYVDXXXXXXX 66
           DPR R  RH LTP NLSST++ T++P +WN+D  TSV+ GSG ++D++ K          
Sbjct: 3   DPRRRTGRHFLTPENLSSTLQITNLPPEWNQDIITSVVAGSGPVIDIKAKNDPRTGK--- 59

Query: 67  XXXXXXXXXXXXXXXXXXCLEWVDVDFRDSSSANRAQNSINKINHFPCRMSMVIPKDWKE 126
                              L  V  D+  S    RA   +N+I +FP ++  +IP ++K+
Sbjct: 60  -------------------LTGVLFDYLTSKDCKRAWEILNRIENFPVKIEQIIPPNYKD 100

Query: 127 KLE----KIDQLKPLEFTRDNFPWDYKLELPFEMVSEVPLPRKPLPVVQPITSDAGXXXX 182
            L     K  Q + L+  RD++P++  LELPFEMV+EVP+PR+P P      +++     
Sbjct: 101 HLRETANKNSQKQVLQLNRDSYPFEAGLELPFEMVTEVPIPRRPPPPQAANNTNSVSNNT 160

Query: 183 XXXXXXXXXXXXXXXXXKANEAPAQQIEIPEILARASKHLPAYQPGSMTAPDVVSQNLSK 242
                                     I+ P+IL++ASKHLP++Q GS+ APD +SQNLSK
Sbjct: 161 -------------------------NIQFPDILSKASKHLPSFQDGSIIAPDKISQNLSK 195

Query: 243 IPTLQMIEILSNLKILANQHN-KKPQLEQFLKTNIDLTVAVTQAMLEMGLINYHVISNVL 301
           IP LQ+IEI+SNLKIL+NQ N +K QLE FL TN D+T++VTQA+LEMG I+Y V++ VL
Sbjct: 196 IPPLQLIEIISNLKILSNQENIQKSQLESFLDTNSDITISVTQALLEMGFIDYSVVTKVL 255

Query: 302 GQMQGQ 307
               G+
Sbjct: 256 KSQVGE 261


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.316    0.133    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,510,931
Number of Sequences: 60738
Number of extensions: 628414
Number of successful extensions: 1638
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1632
Number of HSP's gapped (non-prelim): 3
length of query: 414
length of database: 30,389,216
effective HSP length: 109
effective length of query: 305
effective length of database: 23,768,774
effective search space: 7249476070
effective search space used: 7249476070
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)