ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI5596 good R KOG0118 General function prediction only FOG: RRM domain
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI5596 1943866 1942019 -616
(616 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YNL197c [R] KOG0118 FOG: RRM domain 256 5e-68
YDL224c [R] KOG0118 FOG: RRM domain 166 1e-40
SPCC16C4.07 [R] KOG0118 FOG: RRM domain 103 1e-21
SPCC320.07c [R] KOG0118 FOG: RRM domain 92 3e-18
CE08260 [R] KOG1457 RNA binding protein (contains RRM repeats) 60 1e-08
At3g13700 [R] KOG1457 RNA binding protein (contains RRM repeats) 52 2e-06
>YNL197c [R] KOG0118 FOG: RRM domain
Length = 661
Score = 256 bits (655), Expect = 5e-68
Identities = 209/643 (32%), Positives = 289/643 (44%), Gaps = 164/643 (25%)
Query: 36 FSTSSEQL--SAVNPSNASPTHAN----------------GSTIPRHHSDHSGSPLNLSS 77
F++SS+ + S N N SP+H + GS + + + SPL +SS
Sbjct: 13 FASSSDNVVSSTTNTHNISPSHRSSLNLNTTSHPHEASGRGSASGELYLNDTNSPLAISS 72
Query: 78 VLNTLSINTGNQPQTPSI-----------GSYLLILRNIPTDINLREAYALFSLAHGVLS 126
+LNTL++ G+ PQ + GSY L L N+ DI LRE YA+F+LA GV S
Sbjct: 73 MLNTLAL--GSMPQDIASSNISNHDNNIKGSYSLKLSNVAKDITLRECYAIFALAEGVKS 130
Query: 127 IDVIP------------HEDNQPYVVAKFESQHLACQYASILNIKSQIFGPAYPFKVAVE 174
I++ ++N +++A+FE +LA YA ILN K+++FGP++P K VE
Sbjct: 131 IELQKKNSSSSITSASLEDENDIFIIARFELLNLAINYAVILNSKNELFGPSFPNKTTVE 190
Query: 175 VIDELTNQQLFFQTNSPQLQPQLNTNSFQIPSSGSVSSNVAPTLTXXXXXXXXXXXXLLG 234
+ID+ T + F +++ + ++ ++ S S + LL
Sbjct: 191 IIDDTTKNLVSFPSSA------IFNDTSRLNKSNSGMKRPS----------------LLS 228
Query: 235 QRSRFSFSDPFSAENP-----------------------HIPPA---------------- 255
QRSRFSFSDPFS ++P H P
Sbjct: 229 QRSRFSFSDPFSNDSPLSQQQSQQQQQQPQQPQQHSTQKHSPQQCNQQQVNSSIPLSSQG 288
Query: 256 ------------QTSAQTPLQNIDAGKSFLLMEGDGINDTIWGSNPSLSTVNNMV----- 298
S ++ +Q D GKSFLL + IN+ IWG++ S++N +
Sbjct: 289 QVIGLHSNHSHQDLSVESTIQTSDIGKSFLLRDNTEINEKIWGTSGIPSSINGYMSTPQP 348
Query: 299 --------NTTYNQQ-----------------------QQNAVVDWSASKNGAARKQSSS 327
NT+ +Q NA + AS NGA + S+S
Sbjct: 349 STPTLEWGNTSASQHGSSFFLPSAASTAIAPTNSNTSANANASSNNGASNNGANQALSAS 408
Query: 328 VFSGPQQANS-------SATNLPPNSDPSSQVG-VAQQMNGRXXXXXXXXXXXXXXXXXX 379
Q + S+ +LPP SSQ ++ +N
Sbjct: 409 SQQPMMQIGNTINTSLTSSNSLPPYGLMSSQSQHISNMVNTSDMNITPQKQNRFMQQPQP 468
Query: 380 XXXXXXXXXXXXXXXXXXXXXXXXXXXXQPITRSVASVLQNTPGISQVDLSLLARVXXXX 439
T S++S + + ISQ DLSLLAR+
Sbjct: 469 EHMYPVNQSNTPQKVPPARLSSSRNSHKNNSTTSLSSNITGSASISQADLSLLARIPPPA 528
Query: 440 XXXXXXXXCNTLYVGNLPPDATEQELRQLFGGQKGFKRLSFRNKNNNNSG--HGPMCFVE 497
CNTLYVGNLP DATEQELRQLF GQ+GF+RLSFRNKN ++G HGPMCFVE
Sbjct: 529 NPADQNPPCNTLYVGNLPSDATEQELRQLFSGQEGFRRLSFRNKNTTSNGHSHGPMCFVE 588
Query: 498 FEDVAHATRALAELYGSQLPRPVGAHNTKGGIRLSFSKNPLGV 540
F+DV+ ATRALAELYG QLPR ++KGGIRLSFSKNPLGV
Sbjct: 589 FDDVSFATRALAELYGRQLPR--STVSSKGGIRLSFSKNPLGV 629
>YDL224c [R] KOG0118 FOG: RRM domain
Length = 649
Score = 166 bits (419), Expect = 1e-40
Identities = 87/122 (71%), Positives = 93/122 (75%), Gaps = 5/122 (4%)
Query: 424 ISQVDLSLLARVXXXXXXXXXXXXCNTLYVGNLPPDATEQELRQLFGGQKGFKRLSFRNK 483
ISQ DLSLLA+V CNTLYVGNLPPDATEQELRQLF Q+GF+RLSFRNK
Sbjct: 508 ISQADLSLLAKVPPPANPADQNPPCNTLYVGNLPPDATEQELRQLFSNQQGFRRLSFRNK 567
Query: 484 NN-----NNSGHGPMCFVEFEDVAHATRALAELYGSQLPRPVGAHNTKGGIRLSFSKNPL 538
N N GHGP+CFVEFEDV+ ATRALAELYGSQLP P + N KGGIRLSFSKNPL
Sbjct: 568 MNSHGHGNGHGHGPICFVEFEDVSFATRALAELYGSQLPHPRPSLNNKGGIRLSFSKNPL 627
Query: 539 GV 540
GV
Sbjct: 628 GV 629
Score = 143 bits (361), Expect = 7e-34
Identities = 122/390 (31%), Positives = 183/390 (46%), Gaps = 80/390 (20%)
Query: 27 DTTYQLHRGFSTSSEQL----SAVNPS----NASPTHANGST-IPRHHSDHSGSPLNLSS 77
++ + + R FS+SSE + A P + S +N T I R + ++S
Sbjct: 12 ESKFLIERAFSSSSETVPLSKEATYPMPTAYSFSAVRSNSETNIKRENPQGFAKEPIMTS 71
Query: 78 VLNTLSINTGN---------QPQTPSIGSYLLILRNIPTDINLREAYALFSLAHGVLSID 128
+L+ L+++TG P +G Y L+LRN+P DI LRE Y +FSLA GV SI+
Sbjct: 72 MLHNLTMSTGKGNGNDVNSLAPHDVDVGPYCLLLRNLPKDITLRECYCIFSLATGVSSIE 131
Query: 129 VI-----PHEDNQPYVVAKFESQHLACQYASILNIKSQIFGPAYPFKVAVEVIDELTNQQ 183
+ P DN+ VV KF S L YA+ILN KS+IFGP++PF+ ++V++E T
Sbjct: 132 LKRDDREPFNDNEKVVVVKFGSLSLVTHYANILNSKSEIFGPSFPFRSHIDVVNEQTQLP 191
Query: 184 LFFQTN---------------SPQLQPQLNTNSFQIPSSGSVSSN-VAPTLTXXXXXXXX 227
+ FQ + S Q ++ SF S G SS+ + P+
Sbjct: 192 VSFQEHVSSGTTNSSPKNYQLSSSAQNEIQNQSFNTISYGKTSSSPLGPS-------AAK 244
Query: 228 XXXXLLGQRS-RFSFSDPFSAE-----NPHIPPAQTS-AQTPLQNI-------------D 267
LL +RS RFSF+DPF E +P + S +Q L N+ D
Sbjct: 245 PRPSLLSERSLRFSFNDPFGLETISQRKESVPFLRNSISQHDLSNVTTTPVPAGMPPQKD 304
Query: 268 AGKSFLLMEGDGINDTIWGSNPSLSTVNNMVNTTYNQQQQ------NAVVDWSASKNGAA 321
AGKS LL+E D IN++IW + VN++ N+++ Q V++W+AS
Sbjct: 305 AGKSLLLLEKDEINESIWNGD---ELVNDVGNSSFGASLQEPPMSSTPVMEWNASSTA-- 359
Query: 322 RKQSSSVFSGPQQANSSATNLPPNSDPSSQ 351
+ +F Q N + LPP+ SQ
Sbjct: 360 ---NIPLFQLSSQENHQSNLLPPSHHSISQ 386
>SPCC16C4.07 [R] KOG0118 FOG: RRM domain
Length = 561
Score = 103 bits (256), Expect = 1e-21
Identities = 54/93 (58%), Positives = 65/93 (69%), Gaps = 10/93 (10%)
Query: 448 CNTLYVGNLPPDATEQELRQLFGGQKGFKRLSFRNKNNNNSGHGPMCFVEFEDVAHATRA 507
CNT+YVGNLPP +E+EL+ LF Q G+KRL FR K G+GPMCFVEFE++ +A A
Sbjct: 425 CNTIYVGNLPPSTSEEELKVLFSTQVGYKRLCFRTK-----GNGPMCFVEFENIPYAMEA 479
Query: 508 LAELYGSQLPRPVGAHNTKGGIRLSFSKNPLGV 540
L L G L + + KGGIRLSFSKNPLGV
Sbjct: 480 LKNLQGVCL-----SSSIKGGIRLSFSKNPLGV 507
>SPCC320.07c [R] KOG0118 FOG: RRM domain
Length = 761
Score = 91.7 bits (226), Expect = 3e-18
Identities = 47/93 (50%), Positives = 63/93 (67%), Gaps = 10/93 (10%)
Query: 448 CNTLYVGNLPPDATEQELRQLFGGQKGFKRLSFRNKNNNNSGHGPMCFVEFEDVAHATRA 507
CNT+YVGNL E++LR F +KG++RL F+ K G+ PMCFVEFE+V HA +A
Sbjct: 601 CNTIYVGNLSNPDQEKKLRLAFSKEKGYRRLCFKIK-----GNSPMCFVEFEEVCHAAKA 655
Query: 508 LAELYGSQLPRPVGAHNTKGGIRLSFSKNPLGV 540
+ ++ G+ L + KGGIRLS+SKNPLGV
Sbjct: 656 MEKMQGAALDDKI-----KGGIRLSYSKNPLGV 683
>CE08260 [R] KOG1457 RNA binding protein (contains RRM repeats)
Length = 312
Score = 59.7 bits (143), Expect = 1e-08
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 10/91 (10%)
Query: 448 CNTLYVGNLPPDATEQELRQLFGGQKGFKRLSFRNKNNNNSGHGPMCFVEFEDVAHATRA 507
C+TL+V NL + E LR +F GF RL NKN + + FVE+ D+ AT+A
Sbjct: 227 CSTLFVANLSAEVNEDTLRGVFKAFSGFTRLRLHNKNGS-----CVAFVEYSDLQKATQA 281
Query: 508 LAELYGSQLPRPVGAHNTKGGIRLSFSKNPL 538
+ L G Q+ N +GG+R+ +++N +
Sbjct: 282 MISLQGFQI-----TANDRGGLRIEYARNKM 307
>At3g13700 [R] KOG1457 RNA binding protein (contains RRM repeats)
Length = 296
Score = 52.4 bits (124), Expect = 2e-06
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 448 CNTLYVGNLPPDATEQELRQLFGGQKGFKRLSFRNKNNNNSGHGPMCFVEFEDVAHATRA 507
C+TL++ NL P+ TE EL+QL GF L R + G P+ F +FE++ AT A
Sbjct: 222 CSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR-----GGMPVAFADFEEIEQATDA 276
Query: 508 LAELYGSQLPRPVGAHNTKGGIRL 531
+ L G+ L + + +GG+ +
Sbjct: 277 MNHLQGNLL-----SSSDRGGMHI 295
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.312 0.128 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,470,248
Number of Sequences: 60738
Number of extensions: 1147120
Number of successful extensions: 3385
Number of sequences better than 1.0e-05: 6
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3359
Number of HSP's gapped (non-prelim): 15
length of query: 616
length of database: 30,389,216
effective HSP length: 112
effective length of query: 504
effective length of database: 23,586,560
effective search space: 11887626240
effective search space used: 11887626240
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)