ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI5658 good J KOG1697 Translation, ribosomal structure and biogenesis Mitochondrial/chloroplast ribosomal protein S9
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI5658 1964630 1965520 297
(297 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YBR146w [J] KOG1697 Mitochondrial/chloroplast ribosomal protein S9 346 3e-95
At3g49080 [J] KOG1697 Mitochondrial/chloroplast ribosomal protei... 120 3e-27
SPAC29A4.03c [J] KOG1697 Mitochondrial/chloroplast ribosomal pro... 107 2e-23
Hs20533378 [J] KOG1697 Mitochondrial/chloroplast ribosomal prote... 94 2e-19
7298953 [J] KOG1697 Mitochondrial/chloroplast ribosomal protein S9 84 2e-16
At1g74970 [J] KOG1697 Mitochondrial/chloroplast ribosomal protei... 84 2e-16
>YBR146w [J] KOG1697 Mitochondrial/chloroplast ribosomal protein S9
Length = 278
Score = 346 bits (887), Expect = 3e-95
Identities = 167/243 (68%), Positives = 205/243 (83%), Gaps = 4/243 (1%)
Query: 59 RIVPKLSTFYSANPHHEAHIDNLEALLRKYIKYPTVQVEE----RPSWLSLQEYALIGGG 114
RIVPKL+TFYSANP+HE I+ LE LLRKYIK P+ E + W+S EYALIGGG
Sbjct: 36 RIVPKLATFYSANPNHEDRINRLERLLRKYIKLPSQNNNEAQQTKAPWISFDEYALIGGG 95
Query: 115 SRLKSTQYKQLLFMLNRLNSIDPQLVTDEISNTLAKYHKKTKLQPQRDTLKQLDEFGRSL 174
++LK TQY QLL+MLN+L++IDPQL DEI++ L++Y+KK+ + +K LDEFGRS+
Sbjct: 96 TKLKPTQYTQLLYMLNKLHNIDPQLTNDEITSELSQYYKKSSMLSNNIKIKTLDEFGRSI 155
Query: 175 AIGRRKTSTAKVYVVRGEGKILVNDRQLNDYFVKMKDRESVMYPLKAIDSVGKYNVFAMV 234
A+G+RK+STAKV+VVRG G+ILVN RQLNDYF+KMKDRES+MYPL+ I+SVGKYN+FA
Sbjct: 156 AVGKRKSSTAKVFVVRGTGEILVNGRQLNDYFLKMKDRESIMYPLQVIESVGKYNIFATT 215
Query: 235 SGGGITGQADALMHAIGKALVAFNPLLKTRLHRSGVLTRDYRHVERKKPGKRKARKMPTW 294
SGGG TGQA+++MHAI KALV FNPLLK+RLH++GVLTRDYRHVERKKPGK+KARKMPTW
Sbjct: 216 SGGGPTGQAESIMHAIAKALVVFNPLLKSRLHKAGVLTRDYRHVERKKPGKKKARKMPTW 275
Query: 295 VKR 297
VKR
Sbjct: 276 VKR 278
>At3g49080 [J] KOG1697 Mitochondrial/chloroplast ribosomal protein S9
Length = 143
Score = 120 bits (300), Expect = 3e-27
Identities = 60/134 (44%), Positives = 87/134 (64%)
Query: 164 LKQLDEFGRSLAIGRRKTSTAKVYVVRGEGKILVNDRQLNDYFVKMKDRESVMYPLKAID 223
++Q+DE GR+ GRRK S A+V++ GEGK VN+++ + YF + R +++ PL
Sbjct: 10 VRQVDETGRAYGTGRRKCSIARVWIQPGEGKFQVNEKEFDVYFPMLDHRAALLRPLAETK 69
Query: 224 SVGKYNVFAMVSGGGITGQADALMHAIGKALVAFNPLLKTRLHRSGVLTRDYRHVERKKP 283
++G++++ V GGG TGQ A+ I +AL + P ++T L +G LTRD R VERKKP
Sbjct: 70 TLGRWDIKCTVKGGGTTGQVGAIQLGISRALQNWEPDMRTSLRAAGFLTRDSRVVERKKP 129
Query: 284 GKRKARKMPTWVKR 297
GK KARK WVKR
Sbjct: 130 GKAKARKSFQWVKR 143
>SPAC29A4.03c [J] KOG1697 Mitochondrial/chloroplast ribosomal protein S9
Length = 132
Score = 107 bits (268), Expect = 2e-23
Identities = 60/131 (45%), Positives = 80/131 (60%)
Query: 167 LDEFGRSLAIGRRKTSTAKVYVVRGEGKILVNDRQLNDYFVKMKDRESVMYPLKAIDSVG 226
LDE G S+ G+RK+S A V ++ G GK VN + YF +M R+ +YPL A + +
Sbjct: 2 LDENGMSITKGKRKSSKATVKMLPGTGKFYVNGSPFDVYFQRMVHRKHAVYPLAACNRLT 61
Query: 227 KYNVFAMVSGGGITGQADALMHAIGKALVAFNPLLKTRLHRSGVLTRDYRHVERKKPGKR 286
YNV+A V GGG TGQ+ A+ AI K+L+ P LK + + + D R VERKK G+
Sbjct: 62 NYNVWATVHGGGPTGQSGAVHAAISKSLILQEPSLKQVIKDTHCVLNDKRKVERKKTGQP 121
Query: 287 KARKMPTWVKR 297
KARK TWVKR
Sbjct: 122 KARKKYTWVKR 132
>Hs20533378 [J] KOG1697 Mitochondrial/chloroplast ribosomal protein S9
Length = 396
Score = 94.4 bits (233), Expect = 2e-19
Identities = 64/188 (34%), Positives = 103/188 (54%), Gaps = 9/188 (4%)
Query: 116 RLKSTQYKQLLFMLNRLNSIDPQLVTDEISNTLAKYHKKTKLQPQRDTLK--QLDEFGR- 172
+L Y Q + +L +L + +E + ++ + L+ ++ ++ Q DE G
Sbjct: 212 KLSDLDYMQFIRLLEKLLTSQCGAAEEEF---VQRFRRSVTLESKKQLIEPVQYDEQGMA 268
Query: 173 -SLAIGRRKTSTAKVYVVR-GEGKILVNDRQLNDYFVKMKDRESVMYPLKAIDSVGKYNV 230
S + G+RKT+ A+ V + G G+I VN YF +DRE +M+P +D +GK++V
Sbjct: 269 FSKSEGKRKTAKAEAIVYKHGSGRIKVNGIDYQLYFPITQDREQLMFPFHFVDRLGKHDV 328
Query: 231 FAMVSGGGITGQADALMHAIGKALVAFNPLLKTR-LHRSGVLTRDYRHVERKKPGKRKAR 289
VSGGG + QA A+ A+ KAL +F + + ++G+LT D R ERKKPG+ AR
Sbjct: 329 TCTVSGGGRSAQAGAIRLAMAKALCSFVTEDEVEWMRQAGLLTTDPRVRERKKPGQEGAR 388
Query: 290 KMPTWVKR 297
+ TW KR
Sbjct: 389 RKFTWKKR 396
>7298953 [J] KOG1697 Mitochondrial/chloroplast ribosomal protein S9
Length = 395
Score = 84.3 bits (207), Expect = 2e-16
Identities = 86/281 (30%), Positives = 131/281 (46%), Gaps = 48/281 (17%)
Query: 47 ARAGAEYGYTGTRIVPKLSTFYSANPHHEAHIDNLEALLRKYIKYPTVQVEERPSWLSLQ 106
AR AE+ TG P S FY+ P+ + ++ VEE L+
Sbjct: 133 ARKAAEFDETGR---PFHSMFYTGKPNFFQLLHDI--------------VEETNKLADLE 175
Query: 107 EYALIGGGS-----RLKSTQYKQL------LFMLNRLNSIDPQLVTDEISNTLAK-YHKK 154
E L G +L+ ++ L L ++ + I+ T+ + +A Y K
Sbjct: 176 ERMLRRGNKPDENQKLEIAGFQLLPKDQLELLLVESIADIEYSNFTNSMDRLIASPYAYK 235
Query: 155 TK------LQPQRDTLKQL-------DEFGRSLAIGR---RKTSTAKVYV-VRGEGKILV 197
+K ++P D KQL DE GR RKT+ A V V + G GKI +
Sbjct: 236 SKAFIERYMKPLMDQSKQLEVPKPRIDEEGRQYITTYECLRKTARADVTVRLPGTGKISI 295
Query: 198 NDRQLNDYFVKMKDRESVMYPLKAIDSVGKYNVFAMVSGGGITGQADALMHAIGKALVAF 257
N + ++ YF RE +++PL+ + +GK +V A V GGG +GQA A+ I +L +F
Sbjct: 296 NGKDIS-YFEDENCREQLLFPLQFSELLGKVDVEANVEGGGPSGQAGAIRWGIAMSLRSF 354
Query: 258 -NPLLKTRLHRSGVLTRDYRHVERKKPGKRKARKMPTWVKR 297
+ + + +G+LTRDYR ERKK G+ AR+ TW KR
Sbjct: 355 VDQEMIESMRLAGLLTRDYRRRERKKFGQEGARRKYTWKKR 395
>At1g74970 [J] KOG1697 Mitochondrial/chloroplast ribosomal protein S9
Length = 208
Score = 84.0 bits (206), Expect = 2e-16
Identities = 46/125 (36%), Positives = 71/125 (56%), Gaps = 1/125 (0%)
Query: 174 LAIGRRKTSTAKVYVVRGEGKILVNDRQLNDYFV-KMKDRESVMYPLKAIDSVGKYNVFA 232
+ GRRK + A+V + G GK+++N R +Y + V PL + Y++F
Sbjct: 84 IGTGRRKCAIARVVLQEGTGKVIINYRDAKEYLQGNPLWLQYVKVPLVTLGYENSYDIFV 143
Query: 233 MVSGGGITGQADALMHAIGKALVAFNPLLKTRLHRSGVLTRDYRHVERKKPGKRKARKMP 292
GGG++GQA A+ + +AL+ + ++ L + G+LTRD R VERKK G +KARK P
Sbjct: 144 KAHGGGLSGQAQAITLGVARALLKVSADHRSPLKKEGLLTRDARVVERKKAGLKKARKAP 203
Query: 293 TWVKR 297
+ KR
Sbjct: 204 QFSKR 208
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.320 0.136 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,897,009
Number of Sequences: 60738
Number of extensions: 607014
Number of successful extensions: 1478
Number of sequences better than 1.0e-05: 6
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1469
Number of HSP's gapped (non-prelim): 6
length of query: 297
length of database: 30,389,216
effective HSP length: 106
effective length of query: 191
effective length of database: 23,950,988
effective search space: 4574638708
effective search space used: 4574638708
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)