ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI5672 good K KOG3218 Transcription RNA polymerase, 25-kDa subunit (common to polymerases I, II and III)
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI5672 1969578 1970222 215
(215 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YBR154c [K] KOG3218 RNA polymerase 25-kDa subunit (common to pol... 352 3e-97
SPAC23C4.15 [K] KOG3218 RNA polymerase 25-kDa subunit (common to... 203 2e-52
Hs14589951 [K] KOG3218 RNA polymerase 25-kDa subunit (common to ... 164 8e-41
CE23831 [K] KOG3218 RNA polymerase 25-kDa subunit (common to pol... 164 1e-40
Hs13633291 [K] KOG3218 RNA polymerase 25-kDa subunit (common to ... 162 3e-40
7303678 [K] KOG3218 RNA polymerase 25-kDa subunit (common to pol... 156 2e-38
At3g22320 [K] KOG3218 RNA polymerase 25-kDa subunit (common to p... 141 6e-34
At5g57980 [K] KOG3218 RNA polymerase 25-kDa subunit (common to p... 110 1e-24
At2g41340 [K] KOG3218 RNA polymerase 25-kDa subunit (common to p... 93 3e-19
Hs17458856 [K] KOG3218 RNA polymerase 25-kDa subunit (common to ... 89 6e-18
At3g57080 [K] KOG3218 RNA polymerase 25-kDa subunit (common to p... 84 1e-16
ECU07g0960 [K] KOG3218 RNA polymerase 25-kDa subunit (common to ... 80 2e-15
At3g54490 [K] KOG3218 RNA polymerase 25-kDa subunit (common to p... 80 2e-15
>YBR154c [K] KOG3218 RNA polymerase 25-kDa subunit (common to polymerases I
II and III)
Length = 215
Score = 352 bits (902), Expect = 3e-97
Identities = 171/215 (79%), Positives = 187/215 (86%)
Query: 1 MDQEQERNISRLWRAFKTVKEMVRDRGYFITQEEIDLSLEDFKAKYCDSMGKPQRKMMSF 60
MDQE ERNISRLWRAF+TVKEMV+DRGYFITQEE++L LEDFKAKYCDSMG+PQRKMMSF
Sbjct: 1 MDQENERNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSF 60
Query: 61 QSNPTEESIEKFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTGIFIYQSGITPSA 120
Q+NPTEESI KFP+MGSLWVEFCDE SVGVKTMK FV+HI EKNFQTGIF+YQ+ ITPSA
Sbjct: 61 QANPTEESISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSA 120
Query: 121 NKILPTAAPAVIETFPEASLVVNITHHELVPKHIRLSXXXXXXXXXXXXXXXSQLPRIQR 180
K++P+ PA IETF EA+LVVNITHHELVPKHIRLS SQLPRIQR
Sbjct: 121 MKLVPSIPPATIETFNEAALVVNITHHELVPKHIRLSSDEKRELLKRYRLKESQLPRIQR 180
Query: 181 MDPVALYLGLKRGEVIKIIRKSETSGRYASYRICL 215
DPVALYLGLKRGEV+KIIRKSETSGRYASYRIC+
Sbjct: 181 ADPVALYLGLKRGEVVKIIRKSETSGRYASYRICM 215
>SPAC23C4.15 [K] KOG3218 RNA polymerase 25-kDa subunit (common to polymerases I
II and III)
Length = 210
Score = 203 bits (516), Expect = 2e-52
Identities = 106/211 (50%), Positives = 141/211 (66%), Gaps = 6/211 (2%)
Query: 5 QERNISRLWRAFKTVKEMVRDRGYFITQEEIDLSLEDFKAKYCDSMGKPQRKMMSFQSNP 64
+E+NI R++RA+KT ++V DRGY ++Q E+DL+L+ FKA +C R +SF + P
Sbjct: 4 EEKNIVRVFRAWKTAHQLVHDRGYGVSQAELDLTLDQFKAMHCGMGRNLDRTTLSFYAKP 63
Query: 65 TEESIEKFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTGIFIYQSGITPSANKIL 124
+ +S G++++EF E SVG+K M+ FV + + N +TGI IY + +TPSA KI+
Sbjct: 64 SNDS-----NKGTIYIEFAKEPSVGIKEMRTFVHTLGDHNHKTGILIYANSMTPSAAKII 118
Query: 125 PTAAPA-VIETFPEASLVVNITHHELVPKHIRLSXXXXXXXXXXXXXXXSQLPRIQRMDP 183
T IETF E+ L+VNITHHELVPKHI LS +QLPRIQ DP
Sbjct: 119 ATVTGQFTIETFQESDLIVNITHHELVPKHILLSPDEKKELLDRYKLRETQLPRIQLADP 178
Query: 184 VALYLGLKRGEVIKIIRKSETSGRYASYRIC 214
VA YLGLKRGEV+KI+R+SETSGRY SYRIC
Sbjct: 179 VARYLGLKRGEVVKIVRRSETSGRYNSYRIC 209
>Hs14589951 [K] KOG3218 RNA polymerase 25-kDa subunit (common to polymerases I
II and III)
Length = 210
Score = 164 bits (415), Expect = 8e-41
Identities = 89/220 (40%), Positives = 134/220 (60%), Gaps = 19/220 (8%)
Query: 1 MDQEQERNISRLWRAFKTVKEMVRDRGYFITQEEIDLSLEDFKAKYCD--SMGKPQRK-- 56
MD E+E RLW+ KT+ ++ DRGY +TQ+E+D +LE+FKA++ D S G+P+R
Sbjct: 1 MDDEEETY--RLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDL 58
Query: 57 --MMSFQSNPTEESIEKFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTGIFIYQS 114
+++ +PT++ FPE E VG+KT+K + + E+N + + Q
Sbjct: 59 TVLVAHNDDPTDQMFVFFPE----------EPKVGIKTIKVYCQRMQEENITRALIVVQQ 108
Query: 115 GITPSANKILPTAAPA-VIETFPEASLVVNITHHELVPKHIRLSXXXXXXXXXXXXXXXS 173
G+TPSA + L AP ++E F + L++NIT HELVP+H+ ++ +
Sbjct: 109 GMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLREN 168
Query: 174 QLPRIQRMDPVALYLGLKRGEVIKIIRKSETSGRYASYRI 213
QLPRIQ DPVA Y G+KRG+V+KIIR SET+GRY +YR+
Sbjct: 169 QLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRL 208
>CE23831 [K] KOG3218 RNA polymerase 25-kDa subunit (common to polymerases I
II and III)
Length = 211
Score = 164 bits (414), Expect = 1e-40
Identities = 91/217 (41%), Positives = 128/217 (58%), Gaps = 17/217 (7%)
Query: 4 EQERNISRLWRAFKTVKEMVRDRGYFITQEEIDLSLEDFKAKYCD--SMGKPQRK----M 57
+ E RLWR KTV +MV DRGY + Q+E+D LE FK +Y D S KP R +
Sbjct: 3 DDELETYRLWRIRKTVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLTIL 62
Query: 58 MSFQSNPTEESIEKFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTGIFIYQSGIT 117
++ +P ++ FPE +A +G+KT+K + E+N I + Q+G+T
Sbjct: 63 VAHNDDPADQMFVFFPE----------DAKIGIKTIKAICQQMQEQNISRAIIVVQTGMT 112
Query: 118 PSANKILPTAAPA-VIETFPEASLVVNITHHELVPKHIRLSXXXXXXXXXXXXXXXSQLP 176
PSA + + AP ++E F EA L+VNIT HELVP+H+ ++ SQLP
Sbjct: 113 PSAKQSIGDMAPKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLP 172
Query: 177 RIQRMDPVALYLGLKRGEVIKIIRKSETSGRYASYRI 213
RIQ+ DPVA Y GL+RG+V+KIIR SET+GRY +YR+
Sbjct: 173 RIQQCDPVARYFGLRRGQVVKIIRPSETAGRYITYRL 209
>Hs13633291 [K] KOG3218 RNA polymerase 25-kDa subunit (common to polymerases I
II and III)
Length = 210
Score = 162 bits (410), Expect = 3e-40
Identities = 89/220 (40%), Positives = 133/220 (60%), Gaps = 19/220 (8%)
Query: 1 MDQEQERNISRLWRAFKTVKEMVRDRGYFITQEEIDLSLEDFKAKYCD--SMGKPQRK-- 56
MD E+E RLW+ KT+ ++ DRGY +TQ+E+D +LE+FKA+ D S G+P+R
Sbjct: 1 MDDEEETY--RLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQSGDKPSEGRPRRTDL 58
Query: 57 --MMSFQSNPTEESIEKFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTGIFIYQS 114
+++ +PT++ FPE E VG+KT+K + + E+N + + Q
Sbjct: 59 TVLVAHNDDPTDQMFVFFPE----------EPKVGIKTIKVYCQRMQEENITRALIVVQQ 108
Query: 115 GITPSANKILPTAAPA-VIETFPEASLVVNITHHELVPKHIRLSXXXXXXXXXXXXXXXS 173
G+TPSA + L AP ++E F + L++NIT HELVP+H+ ++ +
Sbjct: 109 GMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLREN 168
Query: 174 QLPRIQRMDPVALYLGLKRGEVIKIIRKSETSGRYASYRI 213
QLPRIQ DPVA Y G+KRG+V+KIIR SET+GRY +YR+
Sbjct: 169 QLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRL 208
>7303678 [K] KOG3218 RNA polymerase 25-kDa subunit (common to polymerases I
II and III)
Length = 210
Score = 156 bits (395), Expect = 2e-38
Identities = 88/220 (40%), Positives = 127/220 (57%), Gaps = 19/220 (8%)
Query: 1 MDQEQERNISRLWRAFKTVKEMVRDRGYFITQEEIDLSLEDFKAKYCD--SMGKPQRK-- 56
MD E E +LWR KT+ ++ DRGY +TQ+E+D +LE FK + D S +P R
Sbjct: 1 MDDEAETY--KLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPARSDL 58
Query: 57 --MMSFQSNPTEESIEKFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTGIFIYQS 114
+++ +PT++ FPE E +G+KT+K + + E+N I + Q
Sbjct: 59 IVLVAHNDDPTDQMFVFFPE----------EPKIGIKTIKTYCTRMQEENIHRAIVVVQG 108
Query: 115 GITPSANKILPTAAPA-VIETFPEASLVVNITHHELVPKHIRLSXXXXXXXXXXXXXXXS 173
G+TPSA + L AP ++E F E+ L++NIT HELVP+H+ ++ +
Sbjct: 109 GMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHVVMTVEEKQELLSRYKLKEN 168
Query: 174 QLPRIQRMDPVALYLGLKRGEVIKIIRKSETSGRYASYRI 213
L RIQ DPVA Y GLKRG+V+KIIR SET+GRY SYR+
Sbjct: 169 MLMRIQAGDPVARYFGLKRGQVVKIIRSSETAGRYISYRL 208
>At3g22320 [K] KOG3218 RNA polymerase 25-kDa subunit (common to polymerases I
II and III)
Length = 205
Score = 141 bits (356), Expect = 6e-34
Identities = 79/208 (37%), Positives = 114/208 (53%), Gaps = 10/208 (4%)
Query: 6 ERNISRLWRAFKTVKEMVRDRGYFITQEEIDLSLEDFKAKYCDSMGKPQRKMMSFQSNPT 65
E + RL+R KT+ +M+RDRGYFI E+ ++ + F K+ D+M + + + N
Sbjct: 4 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRNDN 63
Query: 66 EESIEKFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTGIFIYQSGITPSANKILP 125
+ L++ F DEA VGVKTMK + + +N I + Q +TP A +
Sbjct: 64 SDQ---------LYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCIS 114
Query: 126 TAAPAV-IETFPEASLVVNITHHELVPKHIRLSXXXXXXXXXXXXXXXSQLPRIQRMDPV 184
+ +E F EA ++VNI H LVP+H L+ +QLPRIQ DP+
Sbjct: 115 EISSKFHLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPI 174
Query: 185 ALYLGLKRGEVIKIIRKSETSGRYASYR 212
A Y GLKRG+V+KIIR SET+GRY +YR
Sbjct: 175 ARYFGLKRGQVVKIIRPSETAGRYVTYR 202
>At5g57980 [K] KOG3218 RNA polymerase 25-kDa subunit (common to polymerases I
II and III)
Length = 210
Score = 110 bits (275), Expect = 1e-24
Identities = 68/214 (31%), Positives = 109/214 (50%), Gaps = 8/214 (3%)
Query: 4 EQERNISRLWRAFKTVKEMVRDRGYFITQEEIDLSLEDFKAKYCDSMGKPQRKMMSFQSN 63
+ + I+R+++ +TV +M+RDRGY I + +++L E+F ++C +M K ++ + +N
Sbjct: 3 DMDDEITRIFKVRRTVLQMLRDRGYTIEESDLNLKREEFVQRFCKTMNKVNKEALFVSAN 62
Query: 64 PTEESIEKFPEMGSLWVEFCDEASVGVKTMKNFV-VHITEKNFQTGIFIYQSGIT-PSAN 121
+K ++V + + VGV +K V + + + GI + IT P+
Sbjct: 63 KGPNPADK------IYVFYPEGPKVGVPVIKKEVAIKMRDDKVHRGIVVVPMAITAPARM 116
Query: 122 KILPTAAPAVIETFPEASLVVNITHHELVPKHIRLSXXXXXXXXXXXXXXXSQLPRIQRM 181
+ IE F EA LV NIT H+LV K+ L +QLPRI
Sbjct: 117 AVSELNKMLTIEVFEEAELVTNITEHKLVNKYYVLDDQAKKKLLNTYTVQDTQLPRILVT 176
Query: 182 DPVALYLGLKRGEVIKIIRKSETSGRYASYRICL 215
DP+A Y GLKRG+V+KI R TS Y +YR +
Sbjct: 177 DPLARYYGLKRGQVVKIRRSDATSLDYYTYRFAV 210
>At2g41340 [K] KOG3218 RNA polymerase 25-kDa subunit (common to polymerases I
II and III)
Length = 218
Score = 92.8 bits (229), Expect = 3e-19
Identities = 64/203 (31%), Positives = 98/203 (47%), Gaps = 11/203 (5%)
Query: 11 RLWRAFKTVKEMVRDRGYFITQEEIDLSLEDFKAKYCDSMGKPQRKMMSFQSNPTEESIE 70
+ + A +T EM+RDRGY ++ E+I+LSL+ F+A Y + P ++ + +S +
Sbjct: 23 KYYLARRTTMEMLRDRGYDVSDEDINLSLQQFRALYGEH---PDVDLLRISAKHRFDSSK 79
Query: 71 KFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTG-IFIYQSGITPSANKILPTAAP 129
K V FC V V M+ + + TG I + QS IT A K + +
Sbjct: 80 KIS------VVFCGTGIVKVNAMRVIAADVLSRENITGLILVLQSHITNQALKAVELFSF 133
Query: 130 AVIETFPEASLVVNITHHELVPKHIRLSXXXXXXXXXXXXXXXSQLPRIQRMDPVALYLG 189
V E F L+VN++ H L PKH L+ QLPR+ DP+ Y G
Sbjct: 134 KV-ELFEITDLLVNVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQLPRLSSKDPIVRYYG 192
Query: 190 LKRGEVIKIIRKSETSGRYASYR 212
L+ G+V+K+ K E S + +YR
Sbjct: 193 LETGQVMKVTYKDELSESHVTYR 215
>Hs17458856 [K] KOG3218 RNA polymerase 25-kDa subunit (common to polymerases I
II and III)
Length = 172
Score = 88.6 bits (218), Expect = 6e-18
Identities = 60/219 (27%), Positives = 104/219 (47%), Gaps = 55/219 (25%)
Query: 1 MDQEQERNISRLWRAFKTVKEMVRDRGYFITQEEIDLSLEDFKAKYCDSMGKPQRK---- 56
MD ++E + +LW+ KT+ ++ DRGY +E++ +L++FK + D + QR+
Sbjct: 1 MDDKEE--MYQLWKIRKTIMQLCHDRGYL---DELNQTLKEFKVQSGDKPSEGQRRRTDL 55
Query: 57 --MMSFQSNPTEESIEKFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTGIFIYQS 114
+++ +PT++ FPE +VH+ K
Sbjct: 56 TALVAHNDDPTDKMFVFFPEEPKC------------------LVHMAPKY---------- 87
Query: 115 GITPSANKILPTAAPAVIETFPEASLVVNITHHELVPKHIRLSXXXXXXXXXXXXXXXSQ 174
++E F + L+++IT +ELVP+++ ++ +Q
Sbjct: 88 ----------------ILEQFLQQKLLIDITEYELVPEYVVMTKEEVTVLLALYKLRENQ 131
Query: 175 LPRIQRMDPVALYLGLKRGEVIKIIRKSETSGRYASYRI 213
LPRIQ D VA Y G+K G+V+KIIR SE +GRY +YR+
Sbjct: 132 LPRIQAGDAVARYFGIKHGQVVKIIRPSEMAGRYLTYRL 170
>At3g57080 [K] KOG3218 RNA polymerase 25-kDa subunit (common to polymerases I
II and III)
Length = 222
Score = 84.3 bits (207), Expect = 1e-16
Identities = 55/203 (27%), Positives = 100/203 (49%), Gaps = 11/203 (5%)
Query: 11 RLWRAFKTVKEMVRDRGYFITQEEIDLSLEDFKAKYCDSMGKPQRKMMSFQSNPTEESIE 70
R + A + +M+RDRGY ++ E+I+LSL DF+ Y + + ++ + + + + ++
Sbjct: 27 RYYLARRNGLQMLRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLRISALHRSDSTKKVK 86
Query: 71 KFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTG-IFIYQSGITPSANKILPTAAP 129
+ F + V V +++ V I + TG I + Q+ +T A K + +
Sbjct: 87 ---------IVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAIELFSF 137
Query: 130 AVIETFPEASLVVNITHHELVPKHIRLSXXXXXXXXXXXXXXXSQLPRIQRMDPVALYLG 189
V E F L+VNIT H L P+H L+ QLPRI + D + Y G
Sbjct: 138 KV-EIFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQLPRISKKDAIVRYYG 196
Query: 190 LKRGEVIKIIRKSETSGRYASYR 212
L++G+V+K+ + E + + ++R
Sbjct: 197 LEKGQVVKVNYRGELTESHVAFR 219
>ECU07g0960 [K] KOG3218 RNA polymerase 25-kDa subunit (common to polymerases I
II and III)
Length = 212
Score = 80.5 bits (197), Expect = 2e-15
Identities = 59/196 (30%), Positives = 88/196 (44%), Gaps = 13/196 (6%)
Query: 18 TVKEMVRDRGYFITQEEIDLSLEDFKAKYCDSMGKPQRKMMSFQSNPTEESIEKFPEMGS 77
T EMVRDRGY TQE L+L+ F +Y ++ K R ++F + +
Sbjct: 24 TAIEMVRDRGYTTTQEV--LALDGFHERYPLALTK--RSTLNFVCVNVDRPVA------- 72
Query: 78 LWVEFCDEASVGVKTMKNFVVHITEKNFQTGIFIYQSGITPSANKILPTAAPAVIETFPE 137
V F D+ +G K + + + N I I +P+ ++P IE F
Sbjct: 73 --VHFGDDEKMGKKAFEGLLSQYEKDNMFHLILILPQLPSPTVMSMIPLTPRFSIEIFLV 130
Query: 138 ASLVVNITHHELVPKHIRLSXXXXXXXXXXXXXXXSQLPRIQRMDPVALYLGLKRGEVIK 197
L+ N T H VP H LS LPRI + D +A Y G K+G+V++
Sbjct: 131 EELIFNKTKHSWVPPHRVLSREERESVFRTLKLGPGDLPRILKSDVIARYYGAKQGDVVE 190
Query: 198 IIRKSETSGRYASYRI 213
I R+S+T+G YR+
Sbjct: 191 ITRRSKTAGESIYYRV 206
>At3g54490 [K] KOG3218 RNA polymerase 25-kDa subunit (common to polymerases I
II and III)
Length = 233
Score = 80.5 bits (197), Expect = 2e-15
Identities = 61/207 (29%), Positives = 96/207 (45%), Gaps = 19/207 (9%)
Query: 11 RLWRAFKTVKEMVRDRGYFITQEEIDLSLEDFKAKYCDSMGKPQ----RKMMSFQSNPTE 66
R + A T EM+RDRGY + + E+ L+L +F++ + + KP+ R + +S+P +
Sbjct: 38 RFYLARTTAFEMLRDRGYEVNEAELSLTLSEFRSVFGE---KPELERLRICVPLRSDPKK 94
Query: 67 ESIEKFPEMGSLWVEFCDEASVGVKTMKNFVVHITEK-NFQTGIFIYQSGITPSANKILP 125
+ + V F + VK+++ + I+ I + QS + A K L
Sbjct: 95 KIL----------VVFMGTEPITVKSVRALHIQISNNVGLHAMILVLQSKMNHFAQKAL- 143
Query: 126 TAAPAVIETFPEASLVVNITHHELVPKHIRLSXXXXXXXXXXXXXXXSQLPRIQRMDPVA 185
T P +ETFP L+VNIT H PK L+ QLP +Q D
Sbjct: 144 TTFPFTVETFPIEDLLVNITKHIQQPKIEILNKEEKEQLLRKHALEDKQLPYLQEKDSFV 203
Query: 186 LYLGLKRGEVIKIIRKSETSGRYASYR 212
Y GLK+ +V+KI E G + +YR
Sbjct: 204 RYYGLKKKQVVKITYSKEPVGDFVTYR 230
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.320 0.135 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,631,516
Number of Sequences: 60738
Number of extensions: 442248
Number of successful extensions: 1150
Number of sequences better than 1.0e-05: 13
Number of HSP's better than 0.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1118
Number of HSP's gapped (non-prelim): 14
length of query: 215
length of database: 30,389,216
effective HSP length: 102
effective length of query: 113
effective length of database: 24,193,940
effective search space: 2733915220
effective search space used: 2733915220
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)