ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI5756 good J KOG2815 Translation, ribosomal structure and biogenesis Mitochondrial/choloroplast ribosomal protein S15
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI5756 2005157 2004312 -282
(282 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YDR337w [J] KOG2815 Mitochondrial/choloroplast ribosomal protein... 298 6e-81
SPBC11B10.04c [J] KOG2815 Mitochondrial/choloroplast ribosomal p... 91 2e-18
At1g80615 [J] KOG2815 Mitochondrial/choloroplast ribosomal prote... 64 2e-10
At1g15810 [J] KOG2815 Mitochondrial/choloroplast ribosomal prote... 63 5e-10
7291443 [J] KOG2815 Mitochondrial/choloroplast ribosomal protein... 50 4e-06
>YDR337w [J] KOG2815 Mitochondrial/choloroplast ribosomal protein S15
Length = 286
Score = 298 bits (763), Expect = 6e-81
Identities = 150/244 (61%), Positives = 188/244 (76%), Gaps = 1/244 (0%)
Query: 19 RPFXXXXXXXXXXXXXFLKAQRRKQLNEAKQNKIKNSLDDVDPVLGRPNTPFIDRVMAEL 78
R F FLKAQRRKQ NEAKQ +K S D VDPVLGR +TPFI R+MAEL
Sbjct: 24 RSFVSSPVSNSAKAVKFLKAQRRKQKNEAKQATLKASTDKVDPVLGRADTPFITRIMAEL 83
Query: 79 QEPNVLIPGYEHGEVEKLLVSVEETKKKQASLTGLDS-LLEEQSIKNLRNKHEAVLRIIN 137
+EP VL GY EV+K L ++E K+++A L+GL++ ++ + I+ L ++ EA+LRI++
Sbjct: 84 KEPLVLSKGYNIEEVDKFLAAIESAKRERAELSGLNTEVVGIEDIEKLEDRREAILRILS 143
Query: 138 MKNASNADALKMAVRLAREEFQRFPGDTGSSEVQAAVMTVRIHNLAKHVKENKKDFKNIR 197
M+N+ N +A+KMAV LAR+EF+RFPGDTGSSEVQAA MTVRI N+A H+KE++KDF N R
Sbjct: 144 MRNSENKNAIKMAVELARKEFERFPGDTGSSEVQAACMTVRIQNMANHIKEHRKDFANTR 203
Query: 198 ALRILVQQRQSILRYLKKDQPERYFWTIQKLGLTDNAAMSEFNMDRRYMQDYKFFGDVIL 257
LRILVQQRQ+ILRYLK+D PE+Y+WTIQKLGL D A EFNMDRRYMQDY+FFGD IL
Sbjct: 204 NLRILVQQRQAILRYLKRDNPEKYYWTIQKLGLNDAAITDEFNMDRRYMQDYEFFGDKIL 263
Query: 258 IKDS 261
I+DS
Sbjct: 264 IRDS 267
>SPBC11B10.04c [J] KOG2815 Mitochondrial/choloroplast ribosomal protein S15
Length = 288
Score = 90.9 bits (224), Expect = 2e-18
Identities = 78/241 (32%), Positives = 116/241 (47%), Gaps = 43/241 (17%)
Query: 39 QRRKQLNEAKQNKIKNSLDDV-DPVLG--------------------RPNTPFID-RVMA 76
QRRKQ + ++ K +LD + DP++G +PN P + A
Sbjct: 47 QRRKQNLKRREELRKQNLDTLADPIIGHSSEWIARLLKPYEILVERKKPNFPIRSIKFPA 106
Query: 77 ELQEPNVLIPGYEH-----GEVEKLLVSVEETKKKQASLTGLDS-------------LLE 118
++ N+++ +E E K + + E + +S T L+S LE
Sbjct: 107 SMETINLIVEKFEKIRASATEETKDFIKLNEVNEFPSSDTSLESNQDGFERLHPLAERLE 166
Query: 119 EQS-IKNLRNKHEAVLRIINMKNASNADALKMAVRLAREEFQRFPGDTGSSEVQAAVMTV 177
S + +LR E++ RI N++N+++ +LA E F R DTGS EVQAAV T
Sbjct: 167 RMSQLSDLRK--ESIHRIFNIENSNSKTLRLNNKQLAVESFARNERDTGSPEVQAAVYTS 224
Query: 178 RIHNLAKHVKENKKDFKNIRALRILVQQRQSILRYLKKDQPERYFWTIQKLGLTDNAAMS 237
RI L+ H K +KKD R LR V QRQ +L+YL+K +RY I+ LGLTD +
Sbjct: 225 RILALSDHCKNHKKDQTGKRMLRYYVHQRQRMLKYLRKVNFDRYVHCIKNLGLTDELVLR 284
Query: 238 E 238
E
Sbjct: 285 E 285
>At1g80615 [J] KOG2815 Mitochondrial/choloroplast ribosomal protein S15
Length = 414
Score = 63.9 bits (154), Expect = 2e-10
Identities = 35/106 (33%), Positives = 63/106 (59%), Gaps = 2/106 (1%)
Query: 128 KHEAVLRIINMKNASNADALKMAVRLAREEFQRFPGDTGSSEVQAAVMTVRIHNLAKHVK 187
K + V + N S+A+ +K+ + REEF+ D GS+ VQ A +T +I +L+ +
Sbjct: 306 KDQLVETYFHPDNMSSAEKMKIELAKVREEFKMSESDCGSARVQVAQLTTKIKHLSSVL- 364
Query: 188 ENKKDFKNIRALRILVQQRQSILRYLKKDQPERYFWTIQKLGLTDN 233
+KKD + + L +VQ+R+ +L+Y+++ + Y ++ KLGL DN
Sbjct: 365 -HKKDKHSRKGLIAMVQRRKKLLKYMRRTDWDSYCLSLSKLGLRDN 409
>At1g15810 [J] KOG2815 Mitochondrial/choloroplast ribosomal protein S15
Length = 419
Score = 62.8 bits (151), Expect = 5e-10
Identities = 37/111 (33%), Positives = 63/111 (56%), Gaps = 2/111 (1%)
Query: 123 KNLRNKHEAVLRIINMKNASNADALKMAVRLAREEFQRFPGDTGSSEVQAAVMTVRIHNL 182
K L K + V + N S+A+ +K+ + REEF+ D GS+ VQ A +T +I +L
Sbjct: 306 KLLPPKEDLVDTYFHPDNMSSAEKMKIELSKVREEFKMSESDCGSARVQVAQLTTKIKHL 365
Query: 183 AKHVKENKKDFKNIRALRILVQQRQSILRYLKKDQPERYFWTIQKLGLTDN 233
+ + +KKD + + L +VQ+R+ +L+YL++ + Y + KL L DN
Sbjct: 366 SSSL--HKKDKHSRKGLLGMVQKRKKLLKYLRRTDWDSYCLVLSKLSLRDN 414
>7291443 [J] KOG2815 Mitochondrial/choloroplast ribosomal protein S15
Length = 280
Score = 50.1 bits (118), Expect = 4e-06
Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 1/128 (0%)
Query: 114 DSLLEE-QSIKNLRNKHEAVLRIINMKNASNADALKMAVRLAREEFQRFPGDTGSSEVQA 172
D LL E + K L E+V + + N ++ K +E QR D GS E +
Sbjct: 55 DELLPEYRDCKELDKADESVKSLFKLSNNASYLTTKFYRDEMVKEVQRHAQDFGSMEAKL 114
Query: 173 AVMTVRIHNLAKHVKENKKDFKNIRALRILVQQRQSILRYLKKDQPERYFWTIQKLGLTD 232
A MT I +H+ ++ +D L+ L+ +R+ L+YL++ R+ W ++KL L
Sbjct: 115 AKMTAVIRRYQEHMDKHPRDKMIKVRLKELIDKRKKFLKYLRRWDYPRFEWILEKLDLVY 174
Query: 233 NAAMSEFN 240
+ F+
Sbjct: 175 KPPPTHFH 182
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.319 0.134 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,508,166
Number of Sequences: 60738
Number of extensions: 503401
Number of successful extensions: 1810
Number of sequences better than 1.0e-05: 5
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1805
Number of HSP's gapped (non-prelim): 5
length of query: 282
length of database: 30,389,216
effective HSP length: 105
effective length of query: 177
effective length of database: 24,011,726
effective search space: 4250075502
effective search space used: 4250075502
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)