ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI5762 normal J KOG3262 Translation, ribosomal structure and biogenesis H/ACA small nucleolar RNP component GAR1
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI5762 2005981 2006637 219
(219 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YHR089c [J] KOG3262 H/ACA small nucleolar RNP component GAR1 183 1e-46
SPBC20F10.01 [J] KOG3262 H/ACA small nucleolar RNP component GAR1 144 1e-34
At5g18180 [J] KOG3262 H/ACA small nucleolar RNP component GAR1 131 8e-31
At3g03920 [J] KOG3262 H/ACA small nucleolar RNP component GAR1 125 5e-29
Hs9506713 [J] KOG3262 H/ACA small nucleolar RNP component GAR1 123 2e-28
CE22755 [J] KOG3262 H/ACA small nucleolar RNP component GAR1 112 3e-25
7291241 [J] KOG3262 H/ACA small nucleolar RNP component GAR1 103 2e-22
ECU01g1360 [J] KOG3262 H/ACA small nucleolar RNP component GAR1 61 1e-09
>YHR089c [J] KOG3262 H/ACA small nucleolar RNP component GAR1
Length = 205
Score = 183 bits (465), Expect = 1e-46
Identities = 86/93 (92%), Positives = 89/93 (95%)
Query: 29 QGPPDSVLEMGAFLHPCEGDIVCRSINTKIPYFNAPIYLENKTQVGKVDEILGPLNEVFF 88
QGPPD+VLEMGAFLHPCEGDIVCRSINTKIPYFNAPIYLENKTQVGKVDEILGPLNEVFF
Sbjct: 31 QGPPDTVLEMGAFLHPCEGDIVCRSINTKIPYFNAPIYLENKTQVGKVDEILGPLNEVFF 90
Query: 89 TVKCSDGVKAESFSEGDKFYIAPDKLLPIERFL 121
T+KC DGV+A SF EGDKFYIA DKLLPIERFL
Sbjct: 91 TIKCGDGVQATSFKEGDKFYIAADKLLPIERFL 123
>SPBC20F10.01 [J] KOG3262 H/ACA small nucleolar RNP component GAR1
Length = 194
Score = 144 bits (362), Expect = 1e-34
Identities = 59/94 (62%), Positives = 80/94 (84%)
Query: 28 PQGPPDSVLEMGAFLHPCEGDIVCRSINTKIPYFNAPIYLENKTQVGKVDEILGPLNEVF 87
P GPPD V+E+G F+H CEG++VC+S N KIPYFNAPIYLENK+Q+GK+DE+ GP+N+V+
Sbjct: 23 PSGPPDQVIELGLFMHDCEGEMVCQSTNVKIPYFNAPIYLENKSQIGKIDEVFGPMNQVY 82
Query: 88 FTVKCSDGVKAESFSEGDKFYIAPDKLLPIERFL 121
FTVK S+G+ + SF GDK Y++ DKL+P++RFL
Sbjct: 83 FTVKPSEGIVSSSFKVGDKVYLSGDKLIPLDRFL 116
>At5g18180 [J] KOG3262 H/ACA small nucleolar RNP component GAR1
Length = 189
Score = 131 bits (329), Expect = 8e-31
Identities = 56/93 (60%), Positives = 75/93 (80%)
Query: 29 QGPPDSVLEMGAFLHPCEGDIVCRSINTKIPYFNAPIYLENKTQVGKVDEILGPLNEVFF 88
+GPP V+E+ FLH CEGD V + N KIP+FNAPIYL+NKTQ+G+VDEI GP+NE F
Sbjct: 39 EGPPSEVVEVATFLHACEGDAVFKLSNVKIPHFNAPIYLQNKTQIGRVDEIFGPINESLF 98
Query: 89 TVKCSDGVKAESFSEGDKFYIAPDKLLPIERFL 121
++K +G+ A S+S+GDKF+I+P+KLLP+ RFL
Sbjct: 99 SIKMREGIVATSYSQGDKFFISPEKLLPLSRFL 131
>At3g03920 [J] KOG3262 H/ACA small nucleolar RNP component GAR1
Length = 219
Score = 125 bits (314), Expect = 5e-29
Identities = 56/93 (60%), Positives = 71/93 (76%)
Query: 29 QGPPDSVLEMGAFLHPCEGDIVCRSINTKIPYFNAPIYLENKTQVGKVDEILGPLNEVFF 88
+GPP V+E+ F+H CEGD V + KIP+FNAPIYLENKTQ+GKVDEI GP+NE F
Sbjct: 52 EGPPSEVVEVATFVHACEGDAVTKLSQEKIPHFNAPIYLENKTQIGKVDEIFGPINESLF 111
Query: 89 TVKCSDGVKAESFSEGDKFYIAPDKLLPIERFL 121
++K +G+ A S+S GDKF+I P KLLP+ RFL
Sbjct: 112 SIKMMEGIVATSYSPGDKFFIDPYKLLPLARFL 144
>Hs9506713 [J] KOG3262 H/ACA small nucleolar RNP component GAR1
Length = 217
Score = 123 bits (309), Expect = 2e-28
Identities = 57/95 (60%), Positives = 72/95 (75%), Gaps = 2/95 (2%)
Query: 29 QGPPDSVLEMGAFLHPCEGDIVCRSIN--TKIPYFNAPIYLENKTQVGKVDEILGPLNEV 86
QGPP+ V+ +G FLHPCE DIVC+ K+PYFNAP+YLENK Q+GKVDEI G L +
Sbjct: 64 QGPPERVVLLGEFLHPCEDDIVCKCTTDENKVPYFNAPVYLENKEQIGKVDEIFGQLRDF 123
Query: 87 FFTVKCSDGVKAESFSEGDKFYIAPDKLLPIERFL 121
+F+VK S+ +KA SF + KFYI P KLLP++RFL
Sbjct: 124 YFSVKLSENMKASSFKKLQKFYIDPYKLLPLQRFL 158
>CE22755 [J] KOG3262 H/ACA small nucleolar RNP component GAR1
Length = 276
Score = 112 bits (281), Expect = 3e-25
Identities = 53/93 (56%), Positives = 65/93 (68%)
Query: 29 QGPPDSVLEMGAFLHPCEGDIVCRSINTKIPYFNAPIYLENKTQVGKVDEILGPLNEVFF 88
QGPP+ V+ +G F H C+ DIVC + + KIPYFNAPIY +NK QVGK+DEI G E F
Sbjct: 86 QGPPEEVVLVGVFSHQCQDDIVCNNTSGKIPYFNAPIYFKNKEQVGKIDEIFGSPGENGF 145
Query: 89 TVKCSDGVKAESFSEGDKFYIAPDKLLPIERFL 121
+V S GVKA SF + YI P KLLP++RFL
Sbjct: 146 SVTLSQGVKASSFEPESQLYIDPGKLLPVDRFL 178
>7291241 [J] KOG3262 H/ACA small nucleolar RNP component GAR1
Length = 237
Score = 103 bits (256), Expect = 2e-22
Identities = 46/92 (50%), Positives = 63/92 (68%)
Query: 30 GPPDSVLEMGAFLHPCEGDIVCRSINTKIPYFNAPIYLENKTQVGKVDEILGPLNEVFFT 89
GPP+ V+ +G +++ C+ D+VC+ +PYFNAPI+LENK QVGK+DEI G + + +
Sbjct: 64 GPPERVIPLGNYVYSCQNDLVCKVDIQDVPYFNAPIFLENKEQVGKIDEIFGTVRDYSVS 123
Query: 90 VKCSDGVKAESFSEGDKFYIAPDKLLPIERFL 121
+K SD V A SF K +I P KLLPI RFL
Sbjct: 124 IKLSDNVYANSFKPNQKLFIDPGKLLPIARFL 155
>ECU01g1360 [J] KOG3262 H/ACA small nucleolar RNP component GAR1
Length = 195
Score = 60.8 bits (146), Expect = 1e-09
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 37 EMGAFLHPCEGDIVCRSINTKIPYFNAPIYLENKTQVGKVDEILGPLNEVFFTVKCSDGV 96
E+G L+ C+G +V + IPY N+P+ + +GKVDEILG +++V T+K D
Sbjct: 31 ELGKILYMCQGQLVIKLAAKDIPYPNSPVLDASSKIIGKVDEILGRIDDVHVTIKPDD-- 88
Query: 97 KAESFSEGDKFYIAPDKLLPIERFL 121
+ EG+ + DK +P +RFL
Sbjct: 89 QCSISKEGETLFSYADKFIPKKRFL 113
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.320 0.142 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,790,148
Number of Sequences: 60738
Number of extensions: 259763
Number of successful extensions: 468
Number of sequences better than 1.0e-05: 8
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 458
Number of HSP's gapped (non-prelim): 8
length of query: 219
length of database: 30,389,216
effective HSP length: 102
effective length of query: 117
effective length of database: 24,193,940
effective search space: 2830690980
effective search space used: 2830690980
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)