ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI5766 good R KOG2486 General function prediction only Predicted GTPase
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI5766 2008040 2006964 -359
(359 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YDR336w [R] KOG2486 Predicted GTPase 196 4e-50
At5g11480 [R] KOG2486 Predicted GTPase 79 8e-15
At5g58370 [R] KOG2486 Predicted GTPase 72 2e-12
At2g22870 [R] KOG2486 Predicted GTPase 68 2e-11
Hs7661796 [R] KOG2486 Predicted GTPase 59 8e-09
At3g12080 [J] KOG1191 Mitochondrial GTPase 50 4e-06
>YDR336w [R] KOG2486 Predicted GTPase
Length = 314
Score = 196 bits (498), Expect = 4e-50
Identities = 115/344 (33%), Positives = 179/344 (51%), Gaps = 53/344 (15%)
Query: 13 VKSLVMNTKVTSKEQIVNHDRQNTEIRK-------NRHAKRRDPDKVKTIINDLYQKLNK 65
++++V NTK T+ ++ ++ ++ K N K R P+ +K +ND++ N
Sbjct: 16 IQNIVANTKRTTLATQLSVEKAKKKVPKTALKKKLNSRPKERLPNWLK--LNDVF---NI 70
Query: 66 EYAPLKASDLSQXXXXXXXXXXXXEWSAPTFNDVPGEKVRRLMEKRQQAIQTIMDEENEF 125
Y SD+++ EW A +F+D+P EN F
Sbjct: 71 HYEKPSNSDINKVNRFFNKAKVEFEWCAASFDDIP---------------------ENPF 109
Query: 126 IASTTFKKGSMTLPVASEDVPQINSNKMYQGKTGGIPFELINQLPEIAFLGRCNSGKSTL 185
+ S+K G LI+ LPE+ FLG N GKS++
Sbjct: 110 LNK--------------------KSHKDILKDHGECGTTLIDTLPEVIFLGGTNVGKSSI 149
Query: 186 LNSVTTEVTRNSLNEYANASKKAGFTKTINCFNVGGKFRIIDTPGYGTKGTVEQGKVTMD 245
LN++TT L A SK GFTKT+NC+NVG + R+ID+PGYG + EQGKVT+
Sbjct: 150 LNNITTSHVSRDLGSLARVSKTTGFTKTLNCYNVGNRLRMIDSPGYGFNSSKEQGKVTLQ 209
Query: 246 YLHKRRELRRSFLLISANNGFSEYDAQMIDLLVNDGIPFEIVFTKMDTIKDMAQVESIIE 305
YL +R++L R FLL++ + + D +I + G+PFE+VFTKMD +KD+ + + +
Sbjct: 210 YLLERKQLVRCFLLLAGDKEINNTDNMIIQYIHEHGVPFEVVFTKMDKVKDLNKFKKKVM 269
Query: 306 ESNVLRLPTSPRFIFLNSMTNKRCQKRFGLDVLRYVVLEACGLL 349
S ++ LPT PR + NS+T+ KRFG+D+LRYV+ ++CGL+
Sbjct: 270 SSGLMDLPTLPRLVLTNSLTSSTSPKRFGIDLLRYVIFQSCGLI 313
>At5g11480 [R] KOG2486 Predicted GTPase
Length = 318
Score = 79.3 bits (194), Expect = 8e-15
Identities = 68/223 (30%), Positives = 104/223 (46%), Gaps = 22/223 (9%)
Query: 118 IMDEENEFIASTTFKKGSMTLPVASEDVPQINSNKMYQG-KTGGIPFELINQLPEIAFLG 176
I E++ + + K ++ L + D + ++ + KT P + LPE A +G
Sbjct: 86 ISGEDSASLTTRILKGSNIVLSKYARDAQVVQADYVKSSVKTEDCPAD---GLPEFALVG 142
Query: 177 RCNSGKSTLLNSVTTEVTRNSLNEYANASKKAGFTKTINCFNVGGKFRIIDTPGYGTKGT 236
R N GKS+LLNS+ V R L A SKK G T+ IN F + K+ ++D PGYG
Sbjct: 143 RSNVGKSSLLNSL---VRRKRL---ALTSKKPGKTQCINHFRINDKWYLVDLPGYGYASA 196
Query: 237 VEQ-----GKVTMDYLHKRRELRRSFLLISANNGFSEYDAQMIDLLVNDGIPFEIVFTKM 291
+ K T DY R L FLL+ A+ D + L + +P ++FTK
Sbjct: 197 PHELKQDWNKFTKDYFLNRSTLVSVFLLVDASIPVKPIDLEYASWLGQNQVPMTLIFTKC 256
Query: 292 DTIKDM----AQVESIIEESNVL---RLPTSPRFIFLNSMTNK 327
D K + E+ I+E L T+P +I +S+TN+
Sbjct: 257 DKRKKKKNGGKKPEANIKEFQDLIQGFFETTPPWIMTSSVTNQ 299
>At5g58370 [R] KOG2486 Predicted GTPase
Length = 397
Score = 71.6 bits (174), Expect = 2e-12
Identities = 43/114 (37%), Positives = 63/114 (54%), Gaps = 11/114 (9%)
Query: 169 LPEIAFLGRCNSGKSTLLNSVTTEVTRNSLNEYANASKKAGFTKTINCFNVGGKFRIIDT 228
+PEIAF GR N GKS+LLN++T + S K G T+TIN F +G K R++D
Sbjct: 288 VPEIAFAGRSNVGKSSLLNALTRQWG------VVRTSDKPGLTQTINFFGLGPKVRLVDL 341
Query: 229 PGYG---TKGTVEQG--KVTMDYLHKRRELRRSFLLISANNGFSEYDAQMIDLL 277
PGYG K V++ + +Y+ R L+R LL+ G D ++I+L+
Sbjct: 342 PGYGFAFAKDEVKEAWEDLVKEYVSTRTSLKRVCLLVDTKWGMKPRDQELINLM 395
>At2g22870 [R] KOG2486 Predicted GTPase
Length = 219
Score = 67.8 bits (164), Expect = 2e-11
Identities = 48/131 (36%), Positives = 62/131 (46%), Gaps = 11/131 (8%)
Query: 170 PEIAFLGRCNSGKSTLLNSVTTEVTRNSLNEYANASKKAGFTKTINCFNVGGKFRIIDTP 229
PEIA LGR N GKS+L+N + + E A SKK G T+ IN F V + I+D P
Sbjct: 40 PEIAILGRSNVGKSSLINCLVRK------KEVALTSKKPGKTQLINHFLVNKSWYIVDLP 93
Query: 230 GYGTKGTVEQGKV-----TMDYLHKRRELRRSFLLISANNGFSEYDAQMIDLLVNDGIPF 284
GYG + K T Y R L LLI A+ + D + L + +P
Sbjct: 94 GYGFAKVSDAAKTDWSAFTKGYFLNRDSLVCVLLLIDASVPPQKIDLDCANWLGRNNVPM 153
Query: 285 EIVFTKMDTIK 295
VFTK D +K
Sbjct: 154 TFVFTKCDKMK 164
>Hs7661796 [R] KOG2486 Predicted GTPase
Length = 307
Score = 59.3 bits (142), Expect = 8e-09
Identities = 48/207 (23%), Positives = 89/207 (42%), Gaps = 14/207 (6%)
Query: 146 PQINSNKMYQGKTGGIPFELINQLPEIAFLGRCNSGKSTLLNSVTTEVTRNSLNEYANAS 205
P++ + + G L + F + N GKS+L+ R + S
Sbjct: 111 PEVRGDSTVHLRAGVTALPLPGRPARGVFYRQSNVGKSSLIKLYFHWPLR-----LKSES 165
Query: 206 KKAGFTKTINCFNVGGKFRIIDTPGYGTKGTVEQGKVTMDYLHKRRELRRSFLLISANNG 265
K T+ F VG F ++D PGYG + + + YL +RR L+R+FLL+ + G
Sbjct: 166 PKNQDTQENEFFKVGKHFTVVDMPGYGFRAPEDFVDMVETYLKERRNLKRTFLLVDSVVG 225
Query: 266 FSEYDAQMIDLLVNDGIPFEIVFTKMDTIKDMAQVESIIEESNVLRLPTS---PRFIFLN 322
+ D I++ +P+ IV TK+D ++ +++ + + T P+ ++
Sbjct: 226 IQKTDNIAIEMCEEFALPYVIVLTKIDKSSKGHLLKQVLQIQKFVNMKTQGCFPQLFPVS 285
Query: 323 SMTNKRCQKRFGLDVLRYVVLEACGLL 349
++T G+ +LR + G L
Sbjct: 286 AVTFS------GIHLLRCFIASVTGSL 306
>At3g12080 [J] KOG1191 Mitochondrial GTPase
Length = 659
Score = 50.4 bits (119), Expect = 4e-06
Identities = 44/149 (29%), Positives = 72/149 (47%), Gaps = 9/149 (6%)
Query: 167 NQLPEIAFLGRCNSGKSTLLNSVTTEVTRNSLNEYANASKKAGFTKTINCFNVGGKFRII 226
N +P IA +GR N GKS++LN++ E R ++ + ++ A + G KFR+I
Sbjct: 362 NYIPAIAIIGRPNVGKSSILNALVRE-DRTIVSPVSGTTRDAIDAEFTG--PDGEKFRLI 418
Query: 227 DTPGYGTKGTVEQGKVTMDYLHKR---RELRRS---FLLISANNGFSEYDAQMIDLLVND 280
DT G K +V T + + R +RRS L+I A +E D ++ + + +
Sbjct: 419 DTAGIRKKSSVASSGSTTEAMSVNRAFRAIRRSDVVALVIEAMACITEQDLKIAERIERE 478
Query: 281 GIPFEIVFTKMDTIKDMAQVESIIEESNV 309
G +V K DTI + Q + E +V
Sbjct: 479 GKGCLVVVNKWDTIPNKNQETAAHYEDDV 507
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.317 0.134 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,629,188
Number of Sequences: 60738
Number of extensions: 787676
Number of successful extensions: 2683
Number of sequences better than 1.0e-05: 6
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2672
Number of HSP's gapped (non-prelim): 8
length of query: 359
length of database: 30,389,216
effective HSP length: 108
effective length of query: 251
effective length of database: 23,829,512
effective search space: 5981207512
effective search space used: 5981207512
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)