ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI5777 good A KOG2780 RNA processing and modification Ribosome biogenesis protein RPF1, contains IMP4 domain
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI5777 2013615 2012740 -292
(292 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YHR088w [A] KOG2780 Ribosome biogenesis protein RPF1 contains IM... 486 e-137
SPAC4F8.04 [A] KOG2780 Ribosome biogenesis protein RPF1 contains... 273 3e-73
Hs13376605 [A] KOG2780 Ribosome biogenesis protein RPF1 contains... 255 5e-68
At4g01560 [A] KOG2780 Ribosome biogenesis protein RPF1 contains ... 224 9e-59
CE28332 [A] KOG2780 Ribosome biogenesis protein RPF1 contains IM... 211 1e-54
7297917 [A] KOG2780 Ribosome biogenesis protein RPF1 contains IM... 194 1e-49
7301265 [A] KOG2781 U3 small nucleolar ribonucleoprotein (snoRNP... 132 8e-31
At1g63780 [A] KOG2781 U3 small nucleolar ribonucleoprotein (snoR... 126 3e-29
Hs15529982 [A] KOG2781 U3 small nucleolar ribonucleoprotein (sno... 124 2e-28
YNL075w [A] KOG2781 U3 small nucleolar ribonucleoprotein (snoRNP... 122 5e-28
SPAC19A8.07c [A] KOG2781 U3 small nucleolar ribonucleoprotein (s... 113 4e-25
CE18464 [A] KOG2781 U3 small nucleolar ribonucleoprotein (snoRNP... 113 4e-25
ECU11g1910 [A] KOG2781 U3 small nucleolar ribonucleoprotein (sno... 65 9e-11
ECU11g1940 [A] KOG2780 Ribosome biogenesis protein RPF1 contains... 54 3e-07
>YHR088w [A] KOG2780 Ribosome biogenesis protein RPF1 contains IMP4 domain
Length = 295
Score = 486 bits (1250), Expect = e-137
Identities = 234/291 (80%), Positives = 262/291 (89%), Gaps = 2/291 (0%)
Query: 4 DELRIKNKQKRQKLFAELKDQHNKERHSMRRTRAKEERENPELKEKRLAENVPDTIDNLR 63
+E+ I NK KRQ++FA++K + NKERH+MRR RAKEERENPEL+E+RL ENV TI+N R
Sbjct: 5 NEINITNKLKRQEIFADIKHEKNKERHTMRRKRAKEERENPELREQRLKENVTQTIENTR 64
Query: 64 VYDETMGQEVEGEMDDFMKFFNGT--EPPKILLTTNVNAKKKAYEFANILIEVFPNVTFV 121
VYDET+ +EVEG+ DD M++FN EPPKI LTTNVNAKK AYEFANILIE+ PNVTFV
Sbjct: 65 VYDETINKEVEGDEDDLMRYFNSNSNEPPKIFLTTNVNAKKSAYEFANILIEILPNVTFV 124
Query: 122 KRKFGYKLKEISEFCNNRNYTDIVIINEDKKKVTGLTFIHLPEGPTFYFKISSFVEVEKI 181
KRKFGYKLKEIS+ C RN+TDIVIINEDKKKVTGLTFIHLPEGPTFYFK+SSFVEV+KI
Sbjct: 125 KRKFGYKLKEISDICIKRNFTDIVIINEDKKKVTGLTFIHLPEGPTFYFKLSSFVEVKKI 184
Query: 182 VGHGRPTSHIPELILNNFNTRLGKTVGKLFQSIFPKNPDFEGRQVITLHNQRDYIFFRRH 241
VGHGRPTSHIPELILNNF TRLG+TVG+LFQSI P+NPD EGRQVITLHNQRDYIFFRRH
Sbjct: 185 VGHGRPTSHIPELILNNFQTRLGQTVGRLFQSILPQNPDIEGRQVITLHNQRDYIFFRRH 244
Query: 242 RYVFRNEEKVGLQELGPQFTMKLKRLQRGIKEETEWEHKPSMDKEKKKFNL 292
RYVF++ E+VGLQELGPQFT+KLKRLQRGIKEETEWEHKP MDKEKKKF L
Sbjct: 245 RYVFKDNERVGLQELGPQFTLKLKRLQRGIKEETEWEHKPEMDKEKKKFYL 295
>SPAC4F8.04 [A] KOG2780 Ribosome biogenesis protein RPF1 contains IMP4 domain
Length = 306
Score = 273 bits (697), Expect = 3e-73
Identities = 136/302 (45%), Positives = 203/302 (67%), Gaps = 18/302 (5%)
Query: 7 RIKNKQKRQKLFAELKDQHNKERHSMRRTRAKEERENPELKEKRLAENVPDTIDNLRVYD 66
+IKNK RQ+ + + Q NK++ R+ RAKEE ++PE K RL+EN+P TI++ RVYD
Sbjct: 3 KIKNKIVRQQQYMKALHQKNKDKLERRKERAKEEEKDPEKKRLRLSENIPATIESKRVYD 62
Query: 67 ETM-----GQEVEGEM--DDFMKFFNGTEP-PKILLTTNVNAKKKAYEFANILIEVFPNV 118
ET+ +E++ E+ D+F +F+ PK+L+TT+ A +K Y+FA+ L++ FPN
Sbjct: 63 ETIIEDKPDEELQAELKDDEFSAYFSEERKVPKLLVTTSKRASRKCYDFASELLDCFPNA 122
Query: 119 TFVKRKFGYKLKEISEFCNNRNYTDIVIINEDKKKVTGLTFIHLPEGPTFYFKISSFVEV 178
F KR ++ EI+E R YTD++++NED+KK LT +HLP GP+FYF +S+
Sbjct: 123 EFRKRTGDIEVHEIAEAAAKRGYTDLLVLNEDRKKTNALTLVHLPNGPSFYFTLSNLQTA 182
Query: 179 EKIVGHGRPTSHIPELILNNFNTRLGKTVGKLFQSIFPKNPDFEGRQVITLHNQRDYIFF 238
++I HGR T HIPELI+NNF+TRLG TV + FQS+F + P +GRQV+T+H QRD++FF
Sbjct: 183 KEISNHGRSTGHIPELIINNFSTRLGMTVARAFQSLFIQTPQIQGRQVVTIHCQRDFLFF 242
Query: 239 RRHRYVFRNEEKV------GLQELGPQFTMKLKRLQRGIKEETE----WEHKPSMDKEKK 288
RRHRY FR + + GLQELGP+FTM+L+ +Q+G+ + E +E + +++
Sbjct: 243 RRHRYAFREKSNMPDGIGTGLQELGPRFTMRLRMVQKGVWDRKEGEVFFESNAGEESDRR 302
Query: 289 KF 290
KF
Sbjct: 303 KF 304
>Hs13376605 [A] KOG2780 Ribosome biogenesis protein RPF1 contains IMP4 domain
Length = 349
Score = 255 bits (652), Expect = 5e-68
Identities = 142/297 (47%), Positives = 190/297 (63%), Gaps = 16/297 (5%)
Query: 8 IKNKQKRQKLFAELKDQHNKERHSMRRTRAKEERENPELKEKRLAENVPDTIDNLRVYDE 67
IKNKQ+R +F K Q KE+ + ++ + K+ERE L +K + VP TIDN RVYDE
Sbjct: 57 IKNKQRRHLMFTRWKQQQRKEKLAAKK-KLKKERE--ALGDKAPPKPVPKTIDNQRVYDE 113
Query: 68 TMGQEVEGEM------DDFMKFFNGTEPPKILLTTNVNAKKKAYEFANILIEVFPNVTFV 121
T + E+ D+F +FN PKIL+TT+ + L V PN
Sbjct: 114 TTVDPNDEEVAYDEATDEFASYFNKQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSHVY 173
Query: 122 KRKFGYKLKEISEFCNNRNYTDIVIINEDKKKVTGLTFIHLPEGPTFYFKISSFVEVEKI 181
R+ G LK+I C R++TD+++INED+K GL HLP GPT +FK+SS ++I
Sbjct: 174 YRR-GLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEI 232
Query: 182 VGHGR-PTSHIPELILNNFNTRLGKTVGKLFQSIFPKNPDFEGRQVITLHNQRDYIFFRR 240
G+ PT HIPE+ILNNF TRLG ++G++F S+FP NP F GRQV T HNQRDYIFFR
Sbjct: 233 KRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRF 292
Query: 241 HRYVFRNEEKVGLQELGPQFTMKLKRLQRGIKE----ETEWEHKP-SMDKEKKKFNL 292
HRY+FR+E+KVG+QELGP+FT+KL+ LQ+G + E EW HKP MD ++KF+L
Sbjct: 293 HRYIFRSEKKVGIQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKPREMDTSRRKFHL 349
>At4g01560 [A] KOG2780 Ribosome biogenesis protein RPF1 contains IMP4 domain
Length = 343
Score = 224 bits (572), Expect = 9e-59
Identities = 124/306 (40%), Positives = 178/306 (57%), Gaps = 22/306 (7%)
Query: 8 IKNKQKRQKLFAELKDQHNKERHSMRRTRAKEERENPELKEKRLAENVPDTIDNLRVYDE 67
IKNK KR K++A+ K + E+ R R E+ EL E+ + +P TI+N R DE
Sbjct: 39 IKNKDKRSKVYAKQKHEKKLEKQKKIRARDAAEKRALELGEEPPQKMIPKTIENTRESDE 98
Query: 68 TMGQEVEGEM------DDFMKFFNGTEPPKILLTTNVNAKKKAYEFANILIEVFPNVTFV 121
T+ + + E+ D+F PK+LLTT + + L+ V PN +
Sbjct: 99 TVCRPDDEELFADIDADEFNPVLRREIAPKVLLTTCRFNSTRGPALISELLSVIPNSHYQ 158
Query: 122 KRKFGYKLKEISEFCNNRNYTDIVIINEDKKKVTGLTFIHLPEGPTFYFKISSFVEVEKI 181
KR Y LK+I E+ +++T +++++ ++++ L I LP GPT +FK+S+ V + I
Sbjct: 159 KRGT-YDLKKIVEYATKKDFTSLIVVHTNRREPDALLIIGLPNGPTAHFKLSNLVLRKDI 217
Query: 182 VGHGRPTSHIPELILNNFNTRLGKTVGKLFQSIFPKNPDFEGRQVITLHNQRDYIFFRRH 241
HG PTSH PEL+LNNF TRLG VG+ FQS+FP +P+F GR+V+T HNQRD+IFFR H
Sbjct: 218 KNHGNPTSHQPELVLNNFTTRLGNRVGRFFQSLFPPDPNFRGRRVVTFHNQRDFIFFRHH 277
Query: 242 RYVFRNEE-----------KVGLQELGPQFTMKLKRLQRGIKE----ETEWEHKPSMDKE 286
RY+F +E K LQE GP+FT+KL LQ G + E EW HKP MD
Sbjct: 278 RYIFETKESKSDKGKEETIKPRLQECGPRFTLKLVTLQHGTFDTKGGEFEWVHKPEMDTS 337
Query: 287 KKKFNL 292
+++F L
Sbjct: 338 RRRFFL 343
>CE28332 [A] KOG2780 Ribosome biogenesis protein RPF1 contains IMP4 domain
Length = 384
Score = 211 bits (536), Expect = 1e-54
Identities = 115/276 (41%), Positives = 161/276 (57%), Gaps = 13/276 (4%)
Query: 29 RHSMRRTRAKEERENPELKEKRLAENVPDTIDNLRVYDETMGQEVEGEM------DDFMK 82
R R + + + EL E + VP TI+++R YD TM E + E+ D+F
Sbjct: 110 RKDKRARQGERAQIRDELGESAPQKEVPKTIESMREYDATMVNEEDDEVEHDEANDEFAP 169
Query: 83 FFNGTEPPKILLTTNVNAKKKAYEFANILIEVFPNVTFVKRKFGYKLKEISEFCNNRNYT 142
+FN PK+++T AK ++F L + PN RK LK I E R +T
Sbjct: 170 YFNRETSPKVMITMTPKAKITTFKFCFELQKCIPNSEIFTRK-NVLLKTIIEQAKEREFT 228
Query: 143 DIVIINEDKKKVTGLTFIHLPEGPTFYFKISSFVEVEKIVGHGRPTSHIPELILNNFNTR 202
D+++++ED+KK G+ F HLPEGPT YFKI+S + + G TSH PE+ILNNFNTR
Sbjct: 229 DLLVVHEDRKKPNGIIFCHLPEGPTAYFKINSLTFTQDLKKFGESTSHFPEVILNNFNTR 288
Query: 203 LGKTVGKLFQSIFPKNPDFEGRQVITLHNQRDYIFFRRHRYVFRNE-EKVGLQELGPQFT 261
LG + ++ +FP +P F GR+V+T HNQRDYIFFR HRY F+ E K L ELGP+FT
Sbjct: 289 LGHNIARMLACLFPHDPKFTGRRVVTFHNQRDYIFFRHHRYEFKKEGSKAALLELGPRFT 348
Query: 262 MKLKRLQRGIKE----ETEWEHK-PSMDKEKKKFNL 292
++LK LQ+G + E EW K M+ +++F L
Sbjct: 349 LRLKWLQKGTFDAKWGEFEWVLKRHEMETSRRRFFL 384
>7297917 [A] KOG2780 Ribosome biogenesis protein RPF1 contains IMP4 domain
Length = 394
Score = 194 bits (493), Expect = 1e-49
Identities = 110/266 (41%), Positives = 159/266 (59%), Gaps = 5/266 (1%)
Query: 8 IKNKQKRQKLFAELKDQHNKERHSMRRTRAKEE-RENPELKEKRLAENVPDTIDNLRVYD 66
++NK++R L+ ++K + +K++ RR R K NP + L E + NL D
Sbjct: 103 MRNKEQRLALYKKMKKEKHKKKMQERRARRKAGVPANPGHTIESLREKDQTEVANLNDSD 162
Query: 67 ETMGQEVEGEMDDFMKFFNGTEPPKILLTTNVNAKKKAYEFANILIEVFPNVTFVKRKFG 126
Q+ E ++DDF +F + PK+L+T N K +F L +FPN VK +
Sbjct: 163 NEELQK-ELQLDDFSSYFERSYEPKVLITFADNPVTKTRKFGLELSRIFPNA-LVKIRNK 220
Query: 127 YKLKEISEFCNNRNYTDIVIINEDKKKVTGLTFIHLPEGPTFYFKISSFVEVEKIV-GHG 185
+K+I + +TD+VI+NED++K GL IHLP GPT +FK+S+ I H
Sbjct: 221 SSVKKICKSAEREEFTDVVIVNEDRRKPNGLLVIHLPNGPTAHFKLSNVKLTSDIKRDHK 280
Query: 186 RPTSHIPELILNNFNTRLGKTVGKLFQSIFPKNPDFEGRQVITLHNQRDYIFFRRHRYVF 245
T H PE+ILNNF TRLG TVG++ ++F +P+F GR+ +T HNQRDYIFFR HRY F
Sbjct: 281 EITKHRPEVILNNFTTRLGLTVGRMLGALFHHDPEFRGRRAVTFHNQRDYIFFRHHRYEF 340
Query: 246 RNE-EKVGLQELGPQFTMKLKRLQRG 270
E ++V L+ELGP+FT+KL+ LQ G
Sbjct: 341 TKEGKRVKLRELGPRFTLKLRSLQEG 366
>7301265 [A] KOG2781 U3 small nucleolar ribonucleoprotein (snoRNP) component
Length = 298
Score = 132 bits (331), Expect = 8e-31
Identities = 88/289 (30%), Positives = 147/289 (50%), Gaps = 13/289 (4%)
Query: 6 LRIKNKQKRQKLFAELKDQHNKERHSMRRTRAKEERENPELKEKRLAENVPDTIDNLRVY 65
LR + +Q+R+ L+ + + K + ++ T K EN + K + +++ +L+
Sbjct: 2 LRKQARQRREYLYNKALTERLKSKQKIQETVVKSINENKAIGSKNVKKSLT-AYKSLKYA 60
Query: 66 DETMGQEVEGEMDDFMKFFNGTEPPKILLTTNVNAKKKAYEFANILIEVFPNVTFVKRKF 125
DE G + D++ + G E PKI+LTT+ N + F L + PN + R
Sbjct: 61 DE--GVDDRTVNDEY--HYAGCEDPKIMLTTSHNPSSRLKMFMKELRLIIPNAQQMNRG- 115
Query: 126 GYKLKEISEFCNNRNYTDIVIINEDKKKVTGLTFIHLPEGPTFYFKISSFVEVEKIVGHG 185
Y+L + C N TD +I++E + L HLP GPT +F IS V I G
Sbjct: 116 NYQLTTLMHACRANNVTDFLIVHEHRGIPDSLVVCHLPYGPTAFFNISDVVMRHDIPDIG 175
Query: 186 RPTSHIPELILNNFNTRLGKTVGKLFQSIFPKNPDFEGRQVITLHNQRDYIFFRRHRYVF 245
+ P LI NNF T +G K+ + +FP P ++V++ N D I FR H+Y +
Sbjct: 176 HMSEQKPHLIFNNFKTPIGLRTVKILKHLFPV-PKENSQRVMSFLNHNDSIIFRHHQYKY 234
Query: 246 RNEEKVGLQELGPQFTMKLKRLQRGIKE-----ETEWEHKPSMDKEKKK 289
N+E + L E+GP+F++KL +++ G E +TEW ++P M+ +K+
Sbjct: 235 VNKE-LELTEVGPRFSLKLYQIKLGTLENIKAADTEWINRPYMNTSQKR 282
>At1g63780 [A] KOG2781 U3 small nucleolar ribonucleoprotein (snoRNP) component
Length = 294
Score = 126 bits (317), Expect = 3e-29
Identities = 91/286 (31%), Positives = 145/286 (49%), Gaps = 28/286 (9%)
Query: 27 KERHSMRRTRAKEER---ENPELKEKRLAENVPDTIDNLRVYDETMGQEVEGE------- 76
K+ + R++ +ER E L + L E P + LR + + QE++ E
Sbjct: 9 KKEYIYRKSLEGDERKVYEQKRLIREALQEGKPIPTE-LRNVEAKLRQEIDLEDQNTAVP 67
Query: 77 ---MDDFMKFFNGTEP-PKILLTTNVNAKKKAYEFANILIEVFPNVTFVKRKFGYKLKEI 132
+DD ++ N TE PKILLTT+ N F L VFPN + R + EI
Sbjct: 68 RSHIDD--EYANATEADPKILLTTSRNPSAPLIRFTKELKFVFPNSQRINRG-SQVISEI 124
Query: 133 SEFCNNRNYTDIVIINEDKKKVTGLTFIHLPEGPTFYFKISSFV---EVEKIVGHGRPTS 189
E + ++TD+++++E + GL HLP GPT YF + + V ++ G+
Sbjct: 125 IETARSHDFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHDISDKKSIGKMPE 184
Query: 190 HIPELILNNFNTRLGKTVGKLFQSIFPKNPDFEGRQVITLHNQRDYIFFRRHRY--VFRN 247
P LI NNF T++G+ VG + + IFP P + ++++T NQ DYI FR H Y
Sbjct: 185 QYPHLIFNNFTTQMGQRVGNILKHIFPA-PKLDAKRIVTFSNQSDYISFRNHVYDKGEGG 243
Query: 248 EEKVGLQELGPQFTMKLKRLQRGIKE----ETEWEHKPSMDKEKKK 289
+ + L+E+GP+F ++L +++ G E E EW +P M+ KK+
Sbjct: 244 PKSIELKEIGPRFELRLYQVKLGTVEQNEAEIEWVIRPYMNTSKKR 289
>Hs15529982 [A] KOG2781 U3 small nucleolar ribonucleoprotein (snoRNP) component
Length = 291
Score = 124 bits (310), Expect = 2e-28
Identities = 87/293 (29%), Positives = 145/293 (48%), Gaps = 18/293 (6%)
Query: 6 LRIKNKQKRQKLFAELKDQHNK---ERHSMRRTRAKEERENP-ELKEKRLAENVPDTIDN 61
LR + + +R+ L+ + +++ + ER R +E R P EL+ + LA +
Sbjct: 2 LRREARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALA------LQG 55
Query: 62 LRVYDETMGQEVEGEMDDFMKFFNGTEPPKILLTTNVNAKKKAYEFANILIEVFPNVTFV 121
+D+ G+ V +DD ++ G E PK+++TT+ + + FA L VFP +
Sbjct: 56 SLEFDDAGGEGVTSHVDDEYRWA-GVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRM 114
Query: 122 KRKFGYKLKEISEFCNNRNYTDIVIINEDKKKVTGLTFIHLPEGPTFYFKISSFVEVEKI 181
R +++ + C TD+++++E + GL HLP GPT YF + + V I
Sbjct: 115 NRG-RHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDI 173
Query: 182 VGHGRPTSHIPELILNNFNTRLGKTVGKLFQSIFPKNPDFEGRQVITLHNQRDYIFFRRH 241
G + P LI + F++RLGK V + + +FP P + +VIT NQ DYI FR H
Sbjct: 174 PDLGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPV-PKDDSHRVITFANQDDYISFRHH 232
Query: 242 RYVFRNEEKVGLQELGPQFTMKLKRLQRGIKE-----ETEWEHKPSMDKEKKK 289
Y + V L E+GP+F +KL ++ G E + EW P + +K+
Sbjct: 233 VYKKTDHRNVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKR 285
>YNL075w [A] KOG2781 U3 small nucleolar ribonucleoprotein (snoRNP) component
Length = 290
Score = 122 bits (307), Expect = 5e-28
Identities = 84/294 (28%), Positives = 149/294 (50%), Gaps = 18/294 (6%)
Query: 6 LRIKNKQKRQKLFA---ELKDQHNKERHSMRRTRAKEERENPELKEKRLAENVPDTIDNL 62
LR + +++R+ L+ EL+D +++ + + + + P K LAE+ +++
Sbjct: 2 LRRQARERREYLYRKAQELQDSQLQQKRQIIKQALAQGKPLP----KELAED--ESLQKD 55
Query: 63 RVYDETMGQEVEGE---MDDFMKFFNGTEPPKILLTTNVNAKKKAYEFANILIEVFPNVT 119
YD+++ + E + +DD +G P+I++TT+ + + +FA + +FPN
Sbjct: 56 FRYDQSLKESEEADDLQVDDEYAATSGIMDPRIIVTTSRDPSTRLSQFAKEIKLLFPNAV 115
Query: 120 FVKRKFGYKLKEISEFCNNRNYTDIVIINEDKKKVTGLTFIHLPEGPTFYFKISSFVEVE 179
+ R Y + + + C TD+V+++E + T LT H P GPT F + + V
Sbjct: 116 RLNRG-NYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRH 174
Query: 180 KIVGHGRPTSHIPELILNNFNTRLGKTVGKLFQSIFPKNPDFEGRQVITLHNQRDYIFFR 239
I+ G + P LI +NF T LGK V + + +F P + +VIT N+ D+I R
Sbjct: 175 DIINAGNQSEVNPHLIFDNFTTALGKRVVCILKHLFNAGPKKDSERVITFANRGDFISVR 234
Query: 240 RHRYVFRNEEKVGLQELGPQFTMKLKRLQRGIKE----ETEWEHKPSMDKEKKK 289
+H YV R E V + E+GP+F M+L L+ G E + EW+ + + KK
Sbjct: 235 QHVYV-RTREGVEIAEVGPRFEMRLFELRLGTLENKDADVEWQLRRFIRTANKK 287
>SPAC19A8.07c [A] KOG2781 U3 small nucleolar ribonucleoprotein (snoRNP) component
Length = 289
Score = 113 bits (282), Expect = 4e-25
Identities = 83/282 (29%), Positives = 131/282 (46%), Gaps = 11/282 (3%)
Query: 6 LRIKNKQKRQKLFAELKDQHNKERHSMRRTRAKEERENPELKEKRLAENVPDTIDNLRVY 65
LR +++RQ ++ ++ + + RR K N EL K L E+ + Y
Sbjct: 2 LRRAVRERRQFIYKRNQELQEAKLNEKRRALRKALEGNKELN-KDLQED--SQLQKDYKY 58
Query: 66 DETMG--QEVEGEMDDFMKFFNGTEPPKILLTTNVNAKKKAYEFANILIEVFPNVTFVKR 123
DE+ +E E +DD G PK+L+TT+ + +FA + + PN ++
Sbjct: 59 DESRATQEETETNLDDEYHRL-GEREPKVLVTTSREPSSRLAQFAKEVRLLIPN-SYRLN 116
Query: 124 KFGYKLKEISEFCNNRNYTDIVIINEDKKKVTGLTFIHLPEGPTFYFKISSFVEVEKIVG 183
+ + + E + TDIVI++E + GL HLP GPT F + + V I
Sbjct: 117 RGNIVVGSLVEAARANDITDIVILHEHRGIPDGLVISHLPYGPTLSFSLHNVVLRHDIPN 176
Query: 184 HGRPTSHIPELILNNFNTRLGKTVGKLFQSIFPKNPDFEGRQVITLHNQRDYIFFRRHRY 243
G + P LI N ++LGK V ++FP +P +V+T N DYI FR H Y
Sbjct: 177 TGTMSEAYPHLIFENLTSKLGKRVKTALSALFPPDPKDTTPRVVTFANTDDYISFRHHIY 236
Query: 244 VFRNEEKVGLQELGPQFTMKLKRLQRG----IKEETEWEHKP 281
+++ L E GP+F MKL + G + + EW+ KP
Sbjct: 237 AKTGPKQIILSEAGPRFEMKLFEITLGTVDMVDADVEWKLKP 278
>CE18464 [A] KOG2781 U3 small nucleolar ribonucleoprotein (snoRNP) component
Length = 292
Score = 113 bits (282), Expect = 4e-25
Identities = 76/289 (26%), Positives = 139/289 (47%), Gaps = 15/289 (5%)
Query: 6 LRIKNKQKRQKLFAELKDQHNKERHSMRRTRAKEERENPELKEKRLAENVPDTIDNLRVY 65
+R +N+ +R+ +F + ++ K R E+ N ++ N+ L
Sbjct: 2 IRRENRLRREFIFRKSLEEKQKSLEEKR-----EKIRNALENNTKIDYNLRKDAIELAKG 56
Query: 66 DETMGQEVEGEMDDFMKFFNGTEPPKILLTTNVNAKKKAYEFANILIEVFPNVTFVKRKF 125
+ GQ+ E + + + G + PKI++TT+ + + FA + +FPN + R
Sbjct: 57 SDWGGQQYETDSE---YRWAGAQDPKIVITTSRDPSSRLKMFAKEMKLIFPNAQRINRGH 113
Query: 126 GYKLKEISEFCNNRNYTDIVIINEDKKKVTGLTFIHLPEGPTFYFKISSFVEVEKIVGHG 185
Y +K++ + ++ TD++I E + G+ HLP GPT +F +++ V I G
Sbjct: 114 -YDVKQVVQASKAQDSTDLIIFTETRGNPDGMLVCHLPFGPTAFFSMANVVMRHDIPNCG 172
Query: 186 RPTSHIPELILNNFNTRLGKTVGKLFQSIFPKNPDFEGRQVITLHNQRDYIFFRRHRYVF 245
+ P LI +N N++LG + + +FP P + +++IT N DYI FR H Y
Sbjct: 173 TMSEQYPHLIFDNLNSKLGHRFTTILKHLFPV-PKPDSKRIITFSNSEDYISFRHHVYKT 231
Query: 246 RNEEKVGLQELGPQFTMKLKRLQRGIKE-----ETEWEHKPSMDKEKKK 289
N+ +V L E GP+F +K +++ G E E EW + + +K+
Sbjct: 232 ENDGEVELTEAGPRFELKPYQIKLGTLETLAAAEDEWVLRSYTNTARKR 280
>ECU11g1910 [A] KOG2781 U3 small nucleolar ribonucleoprotein (snoRNP) component
Length = 269
Score = 65.5 bits (158), Expect = 9e-11
Identities = 57/285 (20%), Positives = 131/285 (45%), Gaps = 32/285 (11%)
Query: 9 KNKQKRQKLFAELKDQHNKERHSMRRTRAKEERENPELKEKRLAENVPDTIDNLRVYDET 68
+ +++R+ L + ++ +KE +R + N ++ + + ++ P +D + +Y
Sbjct: 4 RKRERREYLLQKEREMLDKEAEEKKRRLGEALESNTKIPHE-IRKDAPMLLDEI-IY--- 58
Query: 69 MGQEVEGEMDDFMKFFNGTEPPKILLTTNVNAKKKAYEFANILIEVFPNVTFVKRKFGYK 128
EG +++ + PK+++TT+ + + FA L V F++ + +
Sbjct: 59 -----EGRIEEEHRL------PKVMVTTSRSPSSQLLHFAKHLSLVLNGENFIRGQL--R 105
Query: 129 LKEISEFCNNRNYTDIVIINEDKKKVTGLTFIHLPEGPTFYFKISSFVEVEKIVGHGRPT 188
+E+S+ + YT ++I++E++ + L + P GPT F I + P
Sbjct: 106 EEEVSDVAHKYGYTCVIIVHENRGRPASLAVSYFPFGPTMRFTIIDHF----LTRRAFPL 161
Query: 189 SHIPELILNNFNTRLGKTVGKLFQSIFPKNPDFEGRQVITLHNQRDYIFFRRHRYVFRNE 248
+ + +N +G + + +FP+ +++++L N+ D I FR Y+ N
Sbjct: 162 APKAYFVCDNMEGTVGIKIKEKMALLFPQCS--RAKRIVSLVNRNDTIAFR--HYLIENG 217
Query: 249 EKVGL-QELGPQFTMKLKRLQRGIKE---ETEWEHKPSMDKEKKK 289
++ L + LG ++ +++G E E EW +KP M+ + +
Sbjct: 218 DRTTLSKSLG--MDLRAYEIRKGTFEMDGEFEWAYKPYMNSRRTR 260
>ECU11g1940 [A] KOG2780 Ribosome biogenesis protein RPF1 contains IMP4 domain
Length = 197
Score = 53.9 bits (128), Expect = 3e-07
Identities = 30/98 (30%), Positives = 52/98 (52%), Gaps = 7/98 (7%)
Query: 170 FKISSFVEVEKIVGHGRPTSHIPELILNNFNTRLGKTVGKLFQSIFPKNPDFEGRQVITL 229
+K ++ V K + H+P+LI+NNF T G + + +FP + RQV
Sbjct: 84 YKSRDYLRVSKPISK----DHLPQLIVNNFTTDTGMKIVEFLAEMFPFSQ--SSRQVANF 137
Query: 230 HNQRDYIFFRRHRYVFRNEEKVGLQELGPQFTMKLKRL 267
Q D+I+FR +RY F + + ++ +GP T++L R+
Sbjct: 138 TVQGDFIYFRVYRYCFGEKGPI-MENVGPHLTLRLWRM 174
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.319 0.138 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,824,093
Number of Sequences: 60738
Number of extensions: 870136
Number of successful extensions: 4223
Number of sequences better than 1.0e-05: 14
Number of HSP's better than 0.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4176
Number of HSP's gapped (non-prelim): 15
length of query: 292
length of database: 30,389,216
effective HSP length: 105
effective length of query: 187
effective length of database: 24,011,726
effective search space: 4490192762
effective search space used: 4490192762
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)