ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI5857 good C KOG4077 Energy production and conversion Cytochrome c oxidase, subunit Va/COX6
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactVI5857 2037064 2036624 -147 
         (147 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YHR051w [C] KOG4077 Cytochrome c oxidase subunit Va/COX6              192   1e-49
SPAC1B2.04 [C] KOG4077 Cytochrome c oxidase subunit Va/COX6           112   2e-25
7299519 [C] KOG4077 Cytochrome c oxidase subunit Va/COX6               66   1e-11
CE20218 [C] KOG4077 Cytochrome c oxidase subunit Va/COX6               63   2e-10
Hs4758038 [C] KOG4077 Cytochrome c oxidase subunit Va/COX6             61   5e-10

>YHR051w [C] KOG4077 Cytochrome c oxidase subunit Va/COX6
          Length = 148

 Score =  192 bits (488), Expect = 1e-49
 Identities = 93/114 (81%), Positives = 102/114 (88%)

Query: 33  QSQFVSIRKYSDAHXXXXXXXXXARYEKEFEEAYDLFEVQRVLNNCFSYDLVPAPAVIEK 92
           ++ F+  RKYSDAH         ARYEKEF+EAYDLFEVQRVLNNCFSYDLVPAPAVIEK
Sbjct: 31  KNTFIQSRKYSDAHDEETFEEFTARYEKEFDEAYDLFEVQRVLNNCFSYDLVPAPAVIEK 90

Query: 93  ALRAARKVNDLPTAVRVFEALRYKVENEDQYKAYLDELKDVREELGIPLKEELF 146
           ALRAAR+VNDLPTA+RVFEAL+YKVENEDQYKAYLDELKDVR+ELG+PLKEELF
Sbjct: 91  ALRAARRVNDLPTAIRVFEALKYKVENEDQYKAYLDELKDVRQELGVPLKEELF 144


>SPAC1B2.04 [C] KOG4077 Cytochrome c oxidase subunit Va/COX6
          Length = 140

 Score =  112 bits (279), Expect = 2e-25
 Identities = 53/91 (58%), Positives = 70/91 (76%)

Query: 57  RYEKEFEEAYDLFEVQRVLNNCFSYDLVPAPAVIEKALRAARKVNDLPTAVRVFEALRYK 116
           +Y   F    D FE+QR LNNCF+YD+VP+  VIE+ALRAAR+VND PTAVR+FE ++ K
Sbjct: 50  KYNDFFSNVQDQFELQRGLNNCFAYDIVPSSDVIEQALRAARRVNDFPTAVRIFEGIKVK 109

Query: 117 VENEDQYKAYLDELKDVREELGIPLKEELFQ 147
           +  ++QY+AY+ ELK V  ELGI LKE+LF+
Sbjct: 110 LPTKEQYQAYVKELKPVCNELGIVLKEDLFK 140


>7299519 [C] KOG4077 Cytochrome c oxidase subunit Va/COX6
          Length = 149

 Score = 66.2 bits (160), Expect = 1e-11
 Identities = 37/92 (40%), Positives = 56/92 (60%), Gaps = 3/92 (3%)

Query: 57  RYEKEFE-EAYDLFEVQRVLNNCFSYDLVPAPAVIEKALRAARKVNDLPTAVRVFEALRY 115
           RYEK F  E  D +E+++ +N+    DLVP+P +IE  LRA+R+VND+  A+R  E  + 
Sbjct: 43  RYEKYFSREGIDGWEIRKGMNDLLGMDLVPSPKIIEAGLRASRRVNDIALAIRWLEGCKD 102

Query: 116 KVENEDQ--YKAYLDELKDVREELGIPLKEEL 145
           K  ++    Y   L+++    +ELGIP  EEL
Sbjct: 103 KCGDQKATLYPYLLEKITPTLQELGIPTIEEL 134


>CE20218 [C] KOG4077 Cytochrome c oxidase subunit Va/COX6
          Length = 174

 Score = 62.8 bits (151), Expect = 2e-10
 Identities = 35/83 (42%), Positives = 52/83 (62%), Gaps = 4/83 (4%)

Query: 67  DLFEVQRVLNNCFSYDLVPAPAVIEKALRAARKVNDLPTAVRVFEALRYKV---ENEDQY 123
           D +EV++ L+    YD++P P V+E ALRA R+VND   AVR  EA++ K    +N D  
Sbjct: 58  DGWEVRKALSELHDYDVIPDPKVVEAALRACRRVNDFALAVRFLEAIKIKCGAQKNRDTV 117

Query: 124 KAYL-DELKDVREELGIPLKEEL 145
            AY+  +++ V +ELGI   E+L
Sbjct: 118 YAYIVKQVEPVLKELGIDTPEQL 140


>Hs4758038 [C] KOG4077 Cytochrome c oxidase subunit Va/COX6
          Length = 150

 Score = 61.2 bits (147), Expect = 5e-10
 Identities = 30/80 (37%), Positives = 50/80 (62%), Gaps = 1/80 (1%)

Query: 67  DLFEVQRVLNNCFSYDLVPAPAVIEKALRAARKVNDLPTAVRVFEALRYKV-ENEDQYKA 125
           D +E+++ +N   +YD+VP P +I+ ALRA R++ND  + VR+ E ++ K   +++ Y  
Sbjct: 66  DAWELRKGINTLVTYDMVPEPKIIDAALRACRRLNDFASLVRILEVVKDKAGPHKEIYPY 125

Query: 126 YLDELKDVREELGIPLKEEL 145
            + EL+    ELGI   EEL
Sbjct: 126 VIQELRPTLNELGISTPEEL 145


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.319    0.136    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,272,469
Number of Sequences: 60738
Number of extensions: 222030
Number of successful extensions: 781
Number of sequences better than 1.0e-05: 5
Number of HSP's better than  0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 774
Number of HSP's gapped (non-prelim): 5
length of query: 147
length of database: 30,389,216
effective HSP length: 96
effective length of query: 51
effective length of database: 24,558,368
effective search space: 1252476768
effective search space used: 1252476768
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)