ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI5864 good R KOG3239 General function prediction only Density-regulated protein related to translation initiation factor 1 (eIF-1/SUI1)
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI5864 2039116 2039715 200
(200 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YJR014w [R] KOG3239 Density-regulated protein related to transla... 222 2e-58
SPBC16C6.05 [R] KOG3239 Density-regulated protein related to tra... 141 5e-34
At5g11900 [R] KOG3239 Density-regulated protein related to trans... 102 3e-22
Hs22059372 [R] KOG3239 Density-regulated protein related to tran... 91 1e-18
CE22051 [R] KOG3239 Density-regulated protein related to transla... 84 2e-16
7293298 [R] KOG3239 Density-regulated protein related to transla... 80 2e-15
>YJR014w [R] KOG3239 Density-regulated protein related to translation
initiation factor 1 (eIF-1/SUI1)
Length = 198
Score = 222 bits (566), Expect = 2e-58
Identities = 110/169 (65%), Positives = 129/169 (76%), Gaps = 5/169 (2%)
Query: 3 LTNVIYCGVCDFPAEYCEFSGKFKRCKAWLQENHPELYTKWYG-----DVTEDVSKQLAE 57
L VIYCG+C +P EYCEFSGK KRCK WL ENH +LY K YG E V+ +LAE
Sbjct: 2 LREVIYCGICSYPPEYCEFSGKLKRCKVWLSENHADLYAKLYGTDDNTQEVEAVTNKLAE 61
Query: 58 SSIGDXXXXXXXXXXXXXXXXQQAREERELAKKLSSKVVIRREARTKRKCMIAISGLEVF 117
SSIG+ Q+ RE+RELAKKLSSKV+I+REARTKRK ++AISGLEVF
Sbjct: 62 SSIGEAREEKLEKDLLKIQKKQENREQRELAKKLSSKVIIKREARTKRKFIVAISGLEVF 121
Query: 118 EIDMKKLSKTFASKFATGCSISKNAEKKEEVIVQGDLADEVEAYIHSLL 166
+IDMKKL+KTFAS+FATGCS+SKNAEKKEEV++QGD+ DEVE YIHSLL
Sbjct: 122 DIDMKKLAKTFASRFATGCSVSKNAEKKEEVVIQGDVMDEVETYIHSLL 170
>SPBC16C6.05 [R] KOG3239 Density-regulated protein related to translation
initiation factor 1 (eIF-1/SUI1)
Length = 190
Score = 141 bits (356), Expect = 5e-34
Identities = 68/160 (42%), Positives = 101/160 (62%), Gaps = 2/160 (1%)
Query: 3 LTNVIYCGVCDFPAEYCEFSGKFKRCKAWLQENHPELYTKWYGDVTEDVSKQLAESSIGD 62
L +V+YC VC P EYCEF G K+CK WL+ +HP++Y K YG+ +D+SK L +
Sbjct: 9 LKSVLYCDVCTLPVEYCEFEGTLKKCKEWLKSSHPDVYDKLYGE--QDLSKDLENTLNVS 66
Query: 63 XXXXXXXXXXXXXXXXQQAREERELAKKLSSKVVIRREARTKRKCMIAISGLEVFEIDMK 122
++ R ERE AK+++SKV+I+ RTKRK + + GL+ F I+ K
Sbjct: 67 GTKDSNAEEQPAKLTKEEKRVEREEAKRMASKVLIKTIERTKRKRVTTVQGLDAFGIETK 126
Query: 123 KLSKTFASKFATGCSISKNAEKKEEVIVQGDLADEVEAYI 162
K +K A+KFATG S++K A+KK+E++VQGDL ++ +I
Sbjct: 127 KAAKMLANKFATGASVTKTADKKDEIVVQGDLNYDIFDFI 166
>At5g11900 [R] KOG3239 Density-regulated protein related to translation
initiation factor 1 (eIF-1/SUI1)
Length = 228
Score = 102 bits (254), Expect = 3e-22
Identities = 66/195 (33%), Positives = 89/195 (44%), Gaps = 38/195 (19%)
Query: 6 VIYCGVCDFPAEYCEFSGKFKRCKAWLQENHPELYTKWYGDVTE----DVSKQL------ 55
V+YCGVC PAEYCEF F RCK WL EN P+LY + E +VS +L
Sbjct: 10 VLYCGVCSLPAEYCEFGPDFARCKPWLVENAPDLYPDLLKEANEKAADNVSDKLQSVGIS 69
Query: 56 ------------AESSIGDXXXXXXXXXXXXXXXXQQA----------REE------REL 87
ES IGD Q +EE ++
Sbjct: 70 SGGADGAPSSAQTESLIGDDAYVERIWLLVEFLLSNQRIFQYIGGTSKKEEVKRLPGGKV 129
Query: 88 AKKLSSKVVIRREARTKRKCMIAISGLEVFEIDMKKLSKTFASKFATGCSISKNAEKKEE 147
KK +V+I + R KRKC+ + GLE+F I + SK KFATG S+ K +KE+
Sbjct: 130 KKKDRQEVIIEKVVRNKRKCITIVKGLELFGIKLSDASKKLGKKFATGASVVKGPTEKEQ 189
Query: 148 VIVQGDLADEVEAYI 162
+ VQGD+ ++ +I
Sbjct: 190 IDVQGDIIYDIVEFI 204
>Hs22059372 [R] KOG3239 Density-regulated protein related to translation
initiation factor 1 (eIF-1/SUI1)
Length = 198
Score = 90.9 bits (224), Expect = 1e-18
Identities = 48/153 (31%), Positives = 78/153 (50%), Gaps = 9/153 (5%)
Query: 6 VIYCGVCDFPAEYCEFSGKFKRCKAWLQENHPELYTKWYGDVTEDVSKQLAESSIGDXXX 65
V+YCGVC P EYCE+ +C+ WL++N P + K E+ KQ E+ I +
Sbjct: 31 VLYCGVCSLPTEYCEYMPDVAKCRQWLEKNFPNEFAKL---TVENSPKQ--EAGISEGQG 85
Query: 66 XXXXXXXXXXXXXQQAREERELAKKLSSKVVIRREARTKRKCMIAISGLEVFEIDMKKLS 125
+ ++ K + KV I + R K+K + + GL FEID+K+
Sbjct: 86 TAGEEEEKKKQKRGGRGQIKQKKKTVPQKVTIAKIPRAKKKYVTRVCGLATFEIDLKEAQ 145
Query: 126 KTFASKFATGCSISKNAEKKEEVIVQGDLADEV 158
+ FA KF+ G S++ ++E+I+QGD D++
Sbjct: 146 RFFAQKFSCGASVT----GEDEIIIQGDFTDDI 174
>CE22051 [R] KOG3239 Density-regulated protein related to translation
initiation factor 1 (eIF-1/SUI1)
Length = 192
Score = 83.6 bits (205), Expect = 2e-16
Identities = 51/156 (32%), Positives = 76/156 (48%), Gaps = 16/156 (10%)
Query: 6 VIYCGVCDFPAEYCEFSGKFKRCKAWLQENHPELYTKWYGDVTEDVSKQLAESSIGDXXX 65
++YCG C P EYC++SG+ C+AW +N PEL E + ++ GD
Sbjct: 26 MVYCGQCSMPPEYCDYSGQTDVCRAWATQNAPEL--------LEGLEISDEPAADGDEKK 77
Query: 66 XXXXXXXXXXXXXQQAREERELAKKLS---SKVVIRREARTKRKCMIAISGLEVFEIDMK 122
A+ KK KV ++RE R K K + I GL F+ID+K
Sbjct: 78 KQKRGGKGSKTGAAAAQAAASGGKKKGGGPQKVTLQREPRGK-KSVTVIKGLATFDIDLK 136
Query: 123 KLSKTFASKFATGCSISKNAEKKEEVIVQGDLADEV 158
SK FA KFA G S++ +E+++QGD+ D++
Sbjct: 137 VASKLFAQKFACGSSVT----GADEIVIQGDVKDDL 168
>7293298 [R] KOG3239 Density-regulated protein related to translation
initiation factor 1 (eIF-1/SUI1)
Length = 189
Score = 80.1 bits (196), Expect = 2e-15
Identities = 41/151 (27%), Positives = 80/151 (52%), Gaps = 17/151 (11%)
Query: 8 YCGVCDFPAEYCEFSGKFKRCKAWLQENHPELYTKWYGDVTEDVSKQLAESSIGDXXXXX 67
YCG C P EYCE+ ++++CK WL+ + P+ + + K E++ D
Sbjct: 31 YCGHCTMPIEYCEYYPEYEKCKEWLELHMPDDFERL---------KIEEEAAAADGTDDD 81
Query: 68 XXXXXXXXXXXQQAREERELAKKLSSKVVIRREARTKRKCMIAISGLEVFEIDMKKLSKT 127
+ +++ ++ K+ + + R AR K+K + ++GL F+ID+K +K
Sbjct: 82 KKRQKRGGKGLLRVKKKEDVPKR----ICVSRAARGKKKSVTVVTGLSTFDIDLKVAAKF 137
Query: 128 FASKFATGCSISKNAEKKEEVIVQGDLADEV 158
F +KFA G S++ + +E+++QGD+ D++
Sbjct: 138 FGTKFACGSSVTGD----DEIVIQGDVKDDL 164
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.315 0.131 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,056,438
Number of Sequences: 60738
Number of extensions: 288636
Number of successful extensions: 799
Number of sequences better than 1.0e-05: 6
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 785
Number of HSP's gapped (non-prelim): 8
length of query: 200
length of database: 30,389,216
effective HSP length: 101
effective length of query: 99
effective length of database: 24,254,678
effective search space: 2401213122
effective search space used: 2401213122
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)