ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI5882 check: MH BK KOG1063 Chromatin structure and dynamics RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily
r_klactVI5882 check: MH BK KOG1063 Transcription RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI5882 2047354 2044976 -793
(793 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YGR200c [BK] KOG1063 RNA polymerase II elongator complex subunit... 957 0.0
SPCC895.06 [BK] KOG1063 RNA polymerase II elongator complex subu... 447 e-125
Hs8922735 [BK] KOG1063 RNA polymerase II elongator complex subun... 344 3e-94
At1g49540 [BK] KOG1063 RNA polymerase II elongator complex subun... 305 1e-82
CE24138 [BK] KOG1063 RNA polymerase II elongator complex subunit... 280 6e-75
7303715 [BK] KOG1063 RNA polymerase II elongator complex subunit... 215 2e-55
ECU01g0610 [BK] KOG1063 RNA polymerase II elongator complex subu... 110 8e-24
Hs7657381 [R] KOG0289 mRNA splicing factor 74 7e-13
CE28600 [S] KOG0281 Beta-TrCP (transducin repeats containing)/Sl... 74 1e-12
7300706 [S] KOG0281 Beta-TrCP (transducin repeats containing)/Sl... 73 2e-12
At5g49200 [R] KOG0274 Cdc4 and related F-box and WD-40 proteins 68 5e-11
Hs16306498 [S] KOG0281 Beta-TrCP (transducin repeats containing)... 66 2e-10
Hs16306496 [S] KOG0281 Beta-TrCP (transducin repeats containing)... 66 2e-10
Hs16306494 [S] KOG0281 Beta-TrCP (transducin repeats containing)... 66 2e-10
CE29339 [S] KOG0295 WD40 repeat-containing protein 64 1e-09
YNL006w [R] KOG0315 G-protein beta subunit-like protein (contain... 63 2e-09
At3g49660 [R] KOG0266 WD40 repeat-containing protein 62 5e-09
Hs4502477 [S] KOG0281 Beta-TrCP (transducin repeats containing)/... 61 8e-09
Hs16117783 [S] KOG0281 Beta-TrCP (transducin repeats containing)... 61 8e-09
Hs19923529 [A] KOG0284 Polyadenylation factor I complex subunit ... 58 5e-08
SPBC354.03 [R] KOG0266 WD40 repeat-containing protein 58 7e-08
YDL145c [U] KOG0292 Vesicle coat complex COPI alpha subunit 57 8e-08
At5g40880 [R] KOG0274 Cdc4 and related F-box and WD-40 proteins 57 8e-08
At1g62020 [U] KOG0292 Vesicle coat complex COPI alpha subunit 57 8e-08
CE21113 [A] KOG0284 Polyadenylation factor I complex subunit PFS2 57 1e-07
CE20251_2 [U] KOG0276 Vesicle coat complex COPI beta' subunit 57 1e-07
7303128 [A] KOG0299 U3 snoRNP-associated protein (contains WD40 ... 57 1e-07
Hs18544419 [A] KOG0272 U4/U6 small nuclear ribonucleoprotein Prp... 56 2e-07
Hs21361641 [R] KOG0266 WD40 repeat-containing protein 56 2e-07
At2g26060 [R] KOG0645 WD40 repeat protein 56 2e-07
Hs8922679 [R] KOG0275 Conserved WD40 repeat-containing protein 55 4e-07
7296695 [A] KOG0284 Polyadenylation factor I complex subunit PFS2 55 4e-07
At5g16750 [A] KOG0319 WD40-repeat-containing subunit of the 18S ... 55 6e-07
At1g49040 [T] KOG2127 Calmodulin-binding protein CRAG contains D... 55 6e-07
CE14894 [A] KOG0319 WD40-repeat-containing subunit of the 18S rR... 54 9e-07
CE02043 [R] KOG0289 mRNA splicing factor 54 9e-07
Hs7108333_2 [R] KOG4155 FOG: WD40 repeat 54 9e-07
Hs4502123_2 [R] KOG4155 FOG: WD40 repeat 54 9e-07
Hs16445438 [R] KOG0644 Uncharacterized conserved protein contain... 53 2e-06
Hs16445436 [R] KOG0644 Uncharacterized conserved protein contain... 53 2e-06
CE23942 [A] KOG0299 U3 snoRNP-associated protein (contains WD40 ... 53 2e-06
HsM8923075 [R] KOG0266 WD40 repeat-containing protein 53 2e-06
CE27762 [R] KOG0274 Cdc4 and related F-box and WD-40 proteins 53 2e-06
CE25007 [R] KOG0274 Cdc4 and related F-box and WD-40 proteins 53 2e-06
At3g15470 [S] KOG0283 WD40 repeat-containing protein 53 2e-06
YDR267c [R] KOG0645 WD40 repeat protein 52 3e-06
SPCC18.05c [S] KOG0271 Notchless-like WD40 repeat-containing pro... 52 3e-06
SPBC713.05 [S] KOG0316 Conserved WD40 repeat-containing protein 52 3e-06
ECU02g1400 [A] KOG0284 Polyadenylation factor I complex subunit ... 52 4e-06
At3g21540 [A] KOG0306 WD40-repeat-containing subunit of the 18S ... 52 4e-06
YBR198c [K] KOG0263 Transcription initiation factor TFIID subuni... 52 5e-06
SPAC343.04c [S] KOG0293 WD40 repeat-containing protein 52 5e-06
7301796 [A] KOG0272 U4/U6 small nuclear ribonucleoprotein Prp4 (... 52 5e-06
YIL046w [R] KOG0274 Cdc4 and related F-box and WD-40 proteins 51 6e-06
SPAC57A10.05c [R] KOG0274 Cdc4 and related F-box and WD-40 proteins 51 6e-06
7293188 [D] KOG0267 Microtubule severing protein katanin p80 sub... 51 6e-06
ECU08g1110 [T] KOG0279 G protein beta subunit-like protein 51 8e-06
>YGR200c [BK] KOG1063 RNA polymerase II elongator complex subunit ELP2 WD
repeat superfamily
Length = 788
Score = 957 bits (2473), Expect = 0.0
Identities = 467/790 (59%), Positives = 588/790 (74%), Gaps = 14/790 (1%)
Query: 2 LSQESIFIGANKQTQVSDLEETTKVVAYGAGKTIALWKSMDTSHHGVFKTLKGHTAEVTC 61
++ E+IFIGANKQTQVSD+ + K+VA+GAGKTIALW ++ ++ GV+ TLKGH AEVTC
Sbjct: 5 ITPEAIFIGANKQTQVSDIHKVKKIVAFGAGKTIALWDPIEPNNKGVYATLKGHEAEVTC 64
Query: 62 VRFVKGTDMMVSASEDFEVRVWNFPKLREGHMDEVECIQVIKHHKHTITVFAVLKNLLVV 121
VRFV +D MVSASED V++W F ++CIQ I+H+ TI + L +L+ V
Sbjct: 65 VRFVPDSDFMVSASEDHHVKIWKFTDY-----SHLQCIQTIQHYSKTIVALSALPSLISV 119
Query: 122 GCADGSISVW--SFIEDQYVLQEEFSVQKGVF-PLCLSMHEIEKTQFILAIGGTNVNVFI 178
GCADG+IS+W + D++ L EF+++KG F PLCLS+ ++E+ +++LAIGGTNVNVFI
Sbjct: 120 GCADGTISIWRQNIQNDEFGLAHEFTIKKGFFYPLCLSLSKVEEKKYLLAIGGTNVNVFI 179
Query: 179 YSLVSNSEGVSKLEFATKLEGHEDWIKSLVFR-ETVPGDYLLASGSQDRYIRLWRIRTNE 237
S + + G+ K +LEGHEDW+KSL FR + PGDYLL SGSQDRYIRLWRIR N+
Sbjct: 180 ASFILSDSGIEKCRVVAELEGHEDWVKSLAFRHQETPGDYLLCSGSQDRYIRLWRIRIND 239
Query: 238 KIDTSEEDEKKLTLLSNKIYKFDISADVHVAINFEALIMGHDDWISSLQWHKTKLQLLTS 297
ID SEED KKLTLLSNK YKF I ++ V INFEALIMGHDDWISSLQWH+++LQLL +
Sbjct: 240 LIDDSEEDSKKLTLLSNKQYKFQIDDELRVGINFEALIMGHDDWISSLQWHESRLQLLAA 299
Query: 298 TADTAVMVWEPDTISGIWICSSRLGELXXXXXXXXXXXXXXFWSCIWFTHDGKDVILTNG 357
TADT++MVWEPD SGIW+CS RLGE+ FWSC+WFTH+ D LTNG
Sbjct: 300 TADTSLMVWEPDETSGIWVCSLRLGEMSSKGASTATGSSGGFWSCLWFTHERMDFFLTNG 359
Query: 358 KTGSWRIWTSTDGLLWDQELGITGATKSVTDVAWSIDGNYLLSTSLDQTTRLFAEWKYET 417
KTGSWR+W + D ++ DQ LGI+GATK VTD+AWS G YLL+TSLDQTTRLFA W Y+
Sbjct: 360 KTGSWRMWATKDNIICDQRLGISGATKDVTDIAWSPSGEYLLATSLDQTTRLFAPWIYDA 419
Query: 418 SGVERKTPSWCEMARPQIHGYDMLCVEPISNTRFVSGGDEKILRSFDEPKAVAQLLQKFS 477
SG +R+ +W E +RPQIHGYDM+CVE +++TRFVSGGDEKILRSFD PK VA +LQKF
Sbjct: 420 SGRKREIATWHEFSRPQIHGYDMICVETVTDTRFVSGGDEKILRSFDLPKGVAGMLQKFV 479
Query: 478 GIKTEHNGDLPDSAALPALGLSNKATTXXXXXXXXXXXXARETAETKNISSELIDELLTP 537
GI+ E ++PDSA +P LGLSNKA + ET +I+ L L P
Sbjct: 480 GIQFEEKSEMPDSATVPVLGLSNKAGEDDANEDDEEEEGGNK--ETPDITDPL-SLLECP 536
Query: 538 PLEDQLQRHTLWPEIEKLYGHGYEISCIDVSPDRKLIATACKSNNAQHAVIRLFDAENWN 597
P+EDQLQRH LWPE+EKLYGHG+EI+C+D+SPD+KLIA+AC+SNN Q+AVIR+F ENW
Sbjct: 537 PMEDQLQRHLLWPEVEKLYGHGFEITCLDISPDQKLIASACRSNNVQNAVIRIFSTENWL 596
Query: 598 QLPQVLPFHNLTITKLRFSKDNRYLLSVSRDRLWSLWERNFDNNSFVLRSFKEKPHSRII 657
++ LPFH+LTIT+L+FSKD ++LLSV RDR W+LWERN ++N+F LR EKPH+RII
Sbjct: 597 EIKPALPFHSLTITRLKFSKDGKFLLSVCRDRKWALWERNMEDNTFELRFKNEKPHTRII 656
Query: 658 WDADWVPLAKGLAFITASRDKTLKFWRLSKEDEATSVELENSIRFSEPVTSISVHKDLYN 717
WDADW PL G F+TASRDKT+K WR KE A LE SI+ ++ VT+IS+H +
Sbjct: 657 WDADWAPLEFGNVFVTASRDKTVKVWRHQKE-PADDYVLEASIKHTKAVTAISIHDSMIR 715
Query: 718 EKVLLAVGFESGAIRILSYT-ESFNDITEIDWAITPADKINRLRWSNLVENGKLLLGVGS 776
EK+L++VG E+G I + SYT F IT+++ ITPADKI RLRWS+L NGKL LGVGS
Sbjct: 716 EKILISVGLENGEIYLYSYTLGKFELITQLNEDITPADKITRLRWSHLKRNGKLFLGVGS 775
Query: 777 ADTSTRIYSL 786
+D STRIYSL
Sbjct: 776 SDLSTRIYSL 785
>SPCC895.06 [BK] KOG1063 RNA polymerase II elongator complex subunit ELP2 WD
repeat superfamily
Length = 760
Score = 447 bits (1151), Expect = e-125
Identities = 280/806 (34%), Positives = 437/806 (53%), Gaps = 65/806 (8%)
Query: 1 MLSQESIFIGANKQTQVSDLEETTKVVAYGAGKTIALWKSMDTSHHGVFKTLKGHTAEVT 60
M E++ +G N+ + ++ YGA + IA+ ++ + GH+ +
Sbjct: 1 MFQYEALHVGCNRIPTAATWSSNLGLI-YGAERLIAVADPFKEINY----LMAGHSGRIN 55
Query: 61 CVRFVKGTD-----MMVSASEDFEVRVWNFPKLREGHMDEVECIQVIKHHKHTITVFAVL 115
CV + ++S + D +R+W +L E + ++ I++ + T+ V
Sbjct: 56 CVCELATNSEYRSPFILSGASDKTLRLW---QLEEEYFTCIKTIEL----EATVNCLCVN 108
Query: 116 KNLLVVGCADGSISVWSFIEDQYVLQE--EFSVQKGVFPLCLSMHEIEKTQFILAIGGTN 173
+NL+V GC++ S V+S+ +Q L E F+ + + PL ++ +++ IL + G++
Sbjct: 109 ENLVVCGCSNSSCIVYSWNAEQRNLTEISRFTCSE-IIPLEFAIVKLDHG-IILTVCGSS 166
Query: 174 VNVFIYSLVSNSEGVSKLEFATKLEGHEDWIKSLVFRETVPGDYLLASGSQDRYIRLWRI 233
+ +Y + +S + L GH DW+++L F++T LASGSQDRYIRLW I
Sbjct: 167 KKIMVYG---SDSAISSFKLKAVLRGHLDWVRTLSFKKTSGSTATLASGSQDRYIRLWNI 223
Query: 234 RTNEKIDTSEEDEKKLTLLSNKIYKFDISADVHVAINFEALIMGHDDWISSLQWHKTKLQ 293
D +E ++LSNK +F + + + I F+AL+MGH+DW+ S+ WH TK
Sbjct: 224 SLWGSEDEKVSEEFFESVLSNKPVRFTLGK-IDLKIVFDALLMGHEDWVMSVDWHPTKEM 282
Query: 294 LLTSTADTAVMVWEPDTISGIWICSSRLGELXXXXXXXXXXXXXX-FWSCIWFTHDGKDV 352
+L+S+AD++++VWEPDT +GIW+ + R+GE+ FW +W + +
Sbjct: 283 ILSSSADSSMIVWEPDTNTGIWVVTGRMGEMASSHGSTTATGSAGGFWGGLW--NPNGNC 340
Query: 353 ILTNGKTGSWRIWTSTDGLLWDQELGITGATKSVTDVAWSIDGNYLLSTSLDQTTRLFAE 412
++ G+TG WR+W G W Q I+G TKSV VAW +G + LS DQTTRLFA
Sbjct: 341 VVCWGRTGGWRLWKQDAGQ-WLQLPSISGHTKSVKGVAWDPEGKFYLSAGTDQTTRLFAR 399
Query: 413 WKYETSGVERKTPSWCEMARPQIHGYDMLCVEPI-SNTRFVSGGDEKILRSFDEPKAVAQ 471
+K K +W EMARPQIHGYD+ + + S F+S DEK+ R F PK + +
Sbjct: 400 FK--------KDNAWHEMARPQIHGYDLTSISCMPSRIGFLSCADEKVSRVFKFPKTIVR 451
Query: 472 LLQKFSGIKTEHNGDLPDSAALPALGLSNKATTXXXXXXXXXXXXARETAETKNISSELI 531
LL + LPD+A +P LGLSNKATT E + +++I
Sbjct: 452 LLYRLCDTNIGEES-LPDAANVPLLGLSNKATTASETGTV-------NAEEVQTPVADVI 503
Query: 532 DELLTPPLEDQLQRHTLWPEIEKLYGHGYEISCIDVSPDRKLIATACKSNNAQHAVIRLF 591
L PP E+ LQR L+PE+EKL+GHGYE+ +S + + AT+CKS +HAVIRL+
Sbjct: 504 GSLNHPPFEEHLQRLLLFPEVEKLFGHGYEVYACAISNNGNIAATSCKSQTPEHAVIRLY 563
Query: 592 DAENWNQLPQVLPFHNLTITKLRFSKDNRYLLSVSRDRLWSLWERN---FDNNSFVLRSF 648
+ ++WNQ QVL H+LT+T ++FS D+RY+LS RDRL L E+ D N+F
Sbjct: 564 ETQSWNQ-QQVLKGHSLTVTTIKFSPDDRYILSAGRDRLVCLHEQAENLLDYNNFA---- 618
Query: 649 KEKPHSRIIWDADWVPLAKGLAFITASRDKTLKFWRLSKEDEATSVELENSIRFSEPVTS 708
K HSRIIWDA W P G F TASRDK +KFW+++ + V +++FS+ VT+
Sbjct: 619 SIKAHSRIIWDASWAPKEMGYFFATASRDKFVKFWKINDNKKICDVA---ALQFSDAVTA 675
Query: 709 ISVHKDLYNEKVLLAVGFESGAIRIL-----SYTESFNDITEIDWAITPADKINRLRWSN 763
+ +N+++LLAVG E+G I I + T+ + T + + P + IN++ W
Sbjct: 676 VDFAPFFHNDELLLAVGTEAGKIFIWRCPRENLTKWYP--TRLPDHMAPMESINQILWKP 733
Query: 764 LVEN-GKLLLGVGSADTSTRIYSLNI 788
E G L + DTS R+ ++ +
Sbjct: 734 TFETMGLYSLLIAGEDTSVRLLNVTL 759
>Hs8922735 [BK] KOG1063 RNA polymerase II elongator complex subunit ELP2 WD
repeat superfamily
Length = 826
Score = 344 bits (883), Expect = 3e-94
Identities = 240/774 (31%), Positives = 395/774 (51%), Gaps = 89/774 (11%)
Query: 26 VVAYGAGKTIALWKSMDTSHHGVFKTLKGHTAEVTCVRFVKGTD-----MMVSASEDFEV 80
++A+G ++ L+ D V L GHTA V C++++ D +VS D +V
Sbjct: 31 LLAFGTSCSVVLY---DPLKRVVVTNLNGHTARVNCIQWICKQDGSPSTELVSGGSDNQV 87
Query: 81 RVWNFPKLR-------EGHMDEVECIQVIKHHKHTITVFAVLKNLLVVGCADGSISVWSF 133
W + +GH V + + + T L L+V AD ++ +WS
Sbjct: 88 IHWEIEDNQLLKAVHLQGHEGPVYAVHAVYQRR---TSDPALCTLIVSAAADSAVRLWSK 144
Query: 134 IEDQYVLQEEFSVQKGVFPLCLSMHEIEKTQF-ILAIGGTNVNVFIYSLVSNSEGVSKLE 192
+ + + + G F L L + + T ILA G + + I++ ++ + +
Sbjct: 145 KGPEVMCLQTLNFGNG-FALALCLSFLPNTDVPILACGNDDCRIHIFAQQND-----QFQ 198
Query: 193 FATKLEGHEDWIKSLVFRETVPGDYLLASGSQDRYIRLWRIRTNEKIDTSEEDEKKLTLL 252
L GHEDWI+ + + D LAS SQD IR+W++ + +D+ + L
Sbjct: 199 KVLSLCGHEDWIRGVEWA-AFGRDLFLASCSQDCLIRIWKLYI-KSTSLETQDDDNIRLK 256
Query: 253 SNKIYKFDISADVHVAINFEALIMGHDDWISSLQWH---------KTKLQLLTSTADTAV 303
N + S + A+ E ++ GH++W++++ W + ++LL+++ D +
Sbjct: 257 ENTFTIENESVKIAFAVTLETVLAGHENWVNAVHWQPVFYKDGVLQQPVRLLSASMDKTM 316
Query: 304 MVWEPDTISGIWICSSRLGELXXXXXXXXXXXXXXFWSCIWFTHDGKDVILTNGKTGSWR 363
++W PD SG+W+ R+GE+ F+ C F DG +I+ + G+
Sbjct: 317 ILWAPDEESGVWLEQVRVGEVGGNTLG--------FYDC-QFNEDGS-MIIAHAFHGALH 366
Query: 364 IW--TSTDGLLWDQELGITGATKSVTDVAWSIDGNYLLSTSLDQTTRLFAEWKYETSGVE 421
+W + + W E+ I+G V D+ W +G ++++ DQTTRLFA WK + +
Sbjct: 367 LWKQNTVNPREWTPEIVISGHFDGVQDLVWDPEGEFIITVGTDQTTRLFAPWKRK----D 422
Query: 422 RKTPSWCEMARPQIHGYDMLCVEPISNTRFVSGGDEKILRSFDEPKAVAQLLQKFSGIKT 481
+ +W E+ARPQIHGYD+ C+ I+ +FVSG DEK+LR F P+ + +G
Sbjct: 423 QSQVTWHEIARPQIHGYDLKCLAMINRFQFVSGADEKVLRVFSAPRNFVENFCAITGQSL 482
Query: 482 EH-----NGDLPDSAALPALGLSNKATTXXXXXXXXXXXXARETA---ETKNISSELIDE 533
H + DLP+ A +PALGLSNKA T+ E + ++ +
Sbjct: 483 NHVLCNQDSDLPEGATVPALGLSNKAVFQGDIASQPSDEEELLTSTGFEYQQVAFQ--PS 540
Query: 534 LLT-PPLEDQLQRHTLWPEIEKLYGHGYEISCIDVSPDRKLIATACKSNNAQHAVIRLFD 592
+LT PP ED L ++TLWPE++KLYGHGYEI C+ + + L+A+ACK+ +HA I L++
Sbjct: 541 ILTEPPTEDHLLQNTLWPEVQKLYGHGYEIFCVTCNSSKTLLASACKAAKKEHAAIILWN 600
Query: 593 AENWNQLPQVLPFHNLTITKLRFSKDNRYLLSVSRDRLWSLWERNFDNNS------FVLR 646
+W Q+ Q L FH+LT+T++ FS + ++LL+VSRDR WSLW++ D S F L
Sbjct: 601 TTSWKQV-QNLVFHSLTVTQMAFSPNEKFLLAVSRDRTWSLWKKQ-DTISPEFEPVFSLF 658
Query: 647 SFKEK---PHSRIIWDADWVPLAKGLAFITASRDKTLKFWRLSKEDEATSVELENSI--- 700
+F K HSRIIW DW P +K F T SRDK + W E ++T +E++I
Sbjct: 659 AFTNKITSVHSRIIWSCDWSPDSK--YFFTGSRDKKVVVW---GECDSTDDCIEHNIGPC 713
Query: 701 ----RFSEPVTSISVHKDLY-NEKVLLAVGFESGAIRILSYTESFNDITEI-DW 748
VT++SV L+ +++ ++AVG E G I + ++ ++ + + EI DW
Sbjct: 714 SSVLDVGGAVTAVSVCPVLHPSQRYVVAVGLECGKICLYTWKKT-DQVPEINDW 766
>At1g49540 [BK] KOG1063 RNA polymerase II elongator complex subunit ELP2 WD
repeat superfamily
Length = 840
Score = 305 bits (782), Expect = 1e-82
Identities = 237/827 (28%), Positives = 379/827 (45%), Gaps = 101/827 (12%)
Query: 7 IFIGANKQTQVSDLE-ETTKVVAYGAGKTIALWKSMDTSHHGVFKTLKGHTAEVTCVRFV 65
+FIGA V+++ + +V++GA +A++ + TL GH A V C ++
Sbjct: 12 VFIGAGCNRVVNNVSWGASGLVSFGAQNAVAVFCPKTAQ---ILTTLPGHKASVNCTHWL 68
Query: 66 KGTDM-----------MVSASEDFEVRVWNFPKLREGHMDEVECIQVIKHHKHTITVFAV 114
+ ++S D + +W L + H K + A
Sbjct: 69 PTSKFAFKAKKLDRQYLLSGDSDGIIILWELSTLNNDQQWRHVLQLPLSHKKGVTCITAY 128
Query: 115 LKN----LLVVGCADGSISVWSFI-------EDQYVLQEEFSVQ-KGVFPLCLSMHEIEK 162
+ + + +DG ++VW E + V + V K + L L+
Sbjct: 129 MVSETDAMFASASSDGVVNVWDVSFPSQPSEECKVVCLDSICVDTKAIVTLSLAELPQNP 188
Query: 163 TQFILAIGGTNVNVFIYSLVSNSEGVSKLEFATKLEGHEDWIKSLVFR------ETVPGD 216
+F LA+GG + + +YS E K +L+GH DWI+SL F E +P
Sbjct: 189 GRFALALGGLDNKIKLYS----GERTGKFTSVCELKGHTDWIRSLDFSLPLHTTEEIPNS 244
Query: 217 YLLASGSQDRYIRLWRIRTNEKIDTSEEDEKKLTLLSNKIYKFDISADVHVAINFEALIM 276
+L S SQD+ IR+W++ + + + + + ++ +S I+ E++++
Sbjct: 245 IMLVSSSQDKVIRIWKLVLVGDVGSWRREITLASYIEGPVF---VSGTFTYQISVESVLI 301
Query: 277 GHDDWISSLQW-------------HKTKLQLLTSTADTAVMVWEPDTISGIWICSSRLGE 323
GH+DW+ S++W + L +L+++ D +M+W P+ +G+W+ +GE
Sbjct: 302 GHEDWVYSVEWQPPVIDFIDGRLVNHQPLSILSASMDKTMMIWRPEKKTGVWVNVVCVGE 361
Query: 324 LXXXXXXXXXXXXXXFWSCIWFTHDGKDVILTNGKTGSWRIW----TSTDGLLWDQELGI 379
L F+ W + IL +G G++ +W +S + W +
Sbjct: 362 LSHCALG--------FYGGHWSPNSLS--ILAHGYGGAFHLWRNVSSSKESENWQMQKVP 411
Query: 380 TGATKSVTDVAWSIDGNYLLSTSLDQTTRLFAEWKYETSGVERKTPSWCEMARPQIHGYD 439
+G +VTDV W+ G YLLS S DQTTR+F+ WK + G E + W E+ARPQ+HG+D
Sbjct: 412 SGHFAAVTDVTWARTGEYLLSVSQDQTTRVFSAWKND-EGNEAEDEHWHELARPQVHGHD 470
Query: 440 MLCVEPIS---NTRFVSGGDEKILRSFDEPKAVAQLLQKFSGIKTEHNGDLPDS------ 490
+ CV + N RFVSG +EK++R F+ P + L+ + G P+
Sbjct: 471 INCVAMVQGKGNHRFVSGAEEKVVRVFEAPLS---FLKTLNHTCAGGEGSFPEDLQADVQ 527
Query: 491 ---AALPALGLSNKATTXXXXXXXXXXXXARETAET-KNISSELIDELLTPPLEDQLQRH 546
A + ALGLS K E +T + + EL PP+EDQL H
Sbjct: 528 VLGANMSALGLSQKPIYLHSSSEPLERNGGGEGLDTFETVPEAAPAELKEPPIEDQLAFH 587
Query: 547 TLWPEIEKLYGHGYEISCIDVSPDRKLIATACKSNNAQHAVIRLFDAENWNQLPQVLPFH 606
TLWPE KLYGHG E+ + L+A++CK+ +A A I L++ W + + L H
Sbjct: 588 TLWPESHKLYGHGNELFSLCSDHKGNLVASSCKAQSASMAEIWLWEVGTWKAVGR-LQSH 646
Query: 607 NLTITKLRFSKDNRYLLSVSRDRLWSLWERNFDNNSFVLRSF--KEKPHSRIIWDADWVP 664
+LT+T L FS D+ LLSVSRDR +S++ +N V K + H RIIW W P
Sbjct: 647 SLTVTHLEFSYDDTLLLSVSRDRHFSVFSIQRTDNGEVSHKLMAKVEAHKRIIWACSWNP 706
Query: 665 LAKGLAFITASRDKTLKFWRLSKEDEATSVELENSIRFSEPVTSISVHKDLYNEKV-LLA 723
G F T+SRDKT+K W S E++A ++ F VT+++ NEK +A
Sbjct: 707 F--GHQFATSSRDKTVKIW--SVENDARIKQILVLPPFGSSVTAVAWTGLDRNEKSGCVA 762
Query: 724 VGFESGAI-----RILSYTESFNDITEIDWAITP----ADKINRLRW 761
VG ESG I +I+ E + + P +NRL W
Sbjct: 763 VGMESGLIELSNVKIIETEEGTTATAALALRLEPFMCHVSAVNRLAW 809
>CE24138 [BK] KOG1063 RNA polymerase II elongator complex subunit ELP2 WD
repeat superfamily
Length = 855
Score = 280 bits (716), Expect = 6e-75
Identities = 221/726 (30%), Positives = 353/726 (48%), Gaps = 101/726 (13%)
Query: 115 LKNLLVVGCADGSISVWSFIEDQYVLQEEFSVQKGVFPLCLSMHEIEKTQFILAIGGTNV 174
+KNL V ++G + W+ + E + F LCL I+ + +LA+G +
Sbjct: 177 IKNL-VSETSNGFHAWWTSSIGDLLNSTEIKLDHKAFALCLDAISIQNS-VLLAVGTSKR 234
Query: 175 NVFIYSLVSNSEGVSKLEFATKLEGHEDWIKSLVFRETV--------------------- 213
V +Y ++ + S+L + GH DWI S+ F E
Sbjct: 235 FVELYGESADKKSFSRL---ISVAGHTDWIHSIAFNEKKSVKMAKKKIKKKGKIVPKKVS 291
Query: 214 ----PGDYLLASGSQDRYIRLWRIR--TNEKIDTSEEDEKKLTL--LSNKIYKFDISADV 265
P L+AS QD Y+RLW I T+EK + ED L++ F I+
Sbjct: 292 KLDNPDHLLVASAGQDTYVRLWAIEPETDEKSENIREDSSTTPPDELTSSANLFSINYTP 351
Query: 266 HVAINFEALIMGHDDWISSLQWHKTKLQLLTSTADTAVMVWEPDTISGIWICSSRLGELX 325
+ + A++ GHDDW+ S W LLT+++D ++W+ I +W RLG +
Sbjct: 352 Y-RCSSHAVMQGHDDWVHSTVWSNDGRVLLTASSDKTCIIWKE--IDNLWRDDVRLGIVG 408
Query: 326 XXXXXXXXXXXXXFWSCIWFTHDGK----DVILTNGKTGSWRIWTSTDG--LLWDQELGI 379
F S + G+ +V++++ G W STD W
Sbjct: 409 GGQAAGFFAAV--FSSSLDLKDSGEKNAENVVISSSYFGGLHCWKSTDEQKTFWTALPMT 466
Query: 380 TGATKSVTDVAW--SIDGN--YLLSTSLDQTTRLFAEWKYETSGVERKTPSWCEMARPQI 435
G V DV W S DG+ +L+S DQTTR+FA+ + S+ E+ARPQ+
Sbjct: 467 GGHVGEVRDVDWHRSDDGDSGFLMSVGQDQTTRVFAK--------NGRQQSYVEIARPQV 518
Query: 436 HGYDMLCVEPISNTRFVSGGDEKILRSFDEPKAVAQLLQKFSGIKTEHN---GDLPD-SA 491
HG+DM C+ ++ + FVSG +EK+ R+F PK+ + L+ SG+ TE + DL + A
Sbjct: 519 HGHDMQCLSFVNPSIFVSGAEEKVFRAFRAPKSFVKSLEAISGVPTEKSFGDSDLAEFGA 578
Query: 492 ALPALGLSNKATTXXXXXXXXXXXXARETAETKNISSELIDE----LLTPPLEDQLQRHT 547
+PALGLSNK ET + ++ + L +PP ED LQ++T
Sbjct: 579 CVPALGLSNKPMVEG------------ETVDGEHWEEDAFRAAPVVLTSPPTEDTLQQNT 626
Query: 548 LWPEIEKLYGHGYEISCIDVSPDRKLIATACKSNNAQHAVIRLFDAENWNQLPQVLPFHN 607
LWPE KLYGHGYE+ + +P ++ATACKS++ +H+V+ L+ NW++ +++ H
Sbjct: 627 LWPEQHKLYGHGYEVYAVTANPTGNVLATACKSSHVEHSVVMLWSTSNWSKKSEIIG-HQ 685
Query: 608 LTITKLRFSKDNRYLLSVSRDRLWSLW-ERNFDNNSFVLRSF--KEKPHSRIIWDADWVP 664
LT+T++ ++ LL+VSRDR L+ E+N + + F K H+RIIW DW+
Sbjct: 686 LTVTQIAWNPSGTRLLTVSRDRTAKLYTEKNGEVDGFDYDCVWTSGKQHTRIIWACDWI- 744
Query: 665 LAKGLAFITASRDKTLKFWRLSKEDEATSVELENSIRFSEPVTSI-SVHKDLYNEKVLLA 723
F+TASRD+ + W S A +++ EPVT+I +V KD ++
Sbjct: 745 --DDEHFVTASRDQKVIVWAESAGQTAPKA----TVKLDEPVTAIAAVSKD------VIV 792
Query: 724 VGFESGAIRILSY-TESFNDITEIDWAITPADK-INRLRWSNLVENGKLLLGVGSADTST 781
G ++G + +L + +E + I +I P D + RLR+S +NG+ L V + D
Sbjct: 793 AGLQTGELIVLRFDSEGLHVIEKIGANRIPIDSAVLRLRFS---KNGR-KLAVATTDAKL 848
Query: 782 RIYSLN 787
RI++++
Sbjct: 849 RIFNVS 854
>7303715 [BK] KOG1063 RNA polymerase II elongator complex subunit ELP2 WD
repeat superfamily
Length = 504
Score = 215 bits (547), Expect = 2e-55
Identities = 158/490 (32%), Positives = 244/490 (49%), Gaps = 60/490 (12%)
Query: 27 VAYGAGKTIALWKSMDTSHHG----VFKTLKGHTAEVTCVRFVKGTDMMVSASEDFEVRV 82
+AYGA IA+ MD G V TL HT V VR++ D ++S +D +
Sbjct: 27 IAYGACNAIAI---MDPKFQGNSAKVLFTLVEHTKRVNTVRWLD-CDKLLSGGDDAIAIL 82
Query: 83 WNFPKLR-------EGHMDEVECIQVIKHHKHTITVFAVLKNLLVVGCADGSISVWSFIE 135
W + +GH V + I+ + LL AD +I +W+F +
Sbjct: 83 WELDETGTTKSFTLKGHTSGVNTVDGIRQQDGSW--------LLATAAADTTIKLWTFQD 134
Query: 136 DQYVLQEEFSVQKGVFPLCLSMHEIEKT-QFILAIGGTNVNVFIYS--LVSNSEGVS--- 189
+ YV + S+ G F CL + + K+ Q +LA G + V ++S + + EG S
Sbjct: 135 NNYVCFQTISLSDG-FCFCLRLQLLPKSNQVLLAFSGDDETVSLWSEQVETAGEGDSLGR 193
Query: 190 KLEFATKLEGHEDWIKSLVFRETVPG-DYLLASGSQDRYIRLWRI--RTNEKIDTSEEDE 246
+ + KL GHEDW++ L F V G D LLASGSQD +IRLWRI R+ E++ + D
Sbjct: 194 QFQRKHKLTGHEDWVRGLDF--VVDGEDLLLASGSQDNFIRLWRIAPRSKEQMQENRVDL 251
Query: 247 KKLTLLSNKIYK----FDISADVHVAINFEALIMGHDDWISSLQWHKT---KLQLLTSTA 299
+L+ ++I + + A++ E+++ GH+ WI + WHKT +L+LL+++
Sbjct: 252 HQLSHNDDEIKVEEKILQLGKEAWYAVSLESVLYGHEGWIYGVHWHKTPDQELRLLSASI 311
Query: 300 DTAVMVWEPDTISGIWICSSRLGELXXXXXXXXXXXXXXFWSCIWFTHDGKDVILTNGKT 359
D V++W P T GIW+ R+GE+ F+ DG I+ +
Sbjct: 312 DKTVIIWAP-TEEGIWLEEVRVGEVGGNSVGFYGGK---------FSGDGHS-IMAHSYQ 360
Query: 360 GSWRIWTSTDGL--LWDQELGITGATKSVTDVAWSIDGNYLLSTSLDQTTRLFAEWKYET 417
G + IW+ LW + + G V D+AW G YL++ S DQTTRL A W +
Sbjct: 361 GGFHIWSQDPDRPQLWTPGVIVGGHYGEVRDLAWEHSGAYLMTASADQTTRLHAPWLQDG 420
Query: 418 SGVERKTPSWCEMARPQIHGYDMLCVEPISNTRFVSGGDEKILRSFDEPKAVAQLLQKFS 477
+ P+W E+ARPQIHGYDM + +S +F SG +EKI+R+F P + + S
Sbjct: 421 AN-----PTWHELARPQIHGYDMQALALLSRYKFASGAEEKIVRTFQAPANFIENFRHIS 475
Query: 478 GIKTEHNGDL 487
GI+ + GD+
Sbjct: 476 GIENDDAGDV 485
>ECU01g0610 [BK] KOG1063 RNA polymerase II elongator complex subunit ELP2 WD
repeat superfamily
Length = 680
Score = 110 bits (275), Expect = 8e-24
Identities = 126/546 (23%), Positives = 232/546 (42%), Gaps = 106/546 (19%)
Query: 196 KLEGHEDWIKSLVFRETVPGDYLLASGSQDRYIRLWRIRTNEKIDTSEEDEKKLTLLSNK 255
++EGH D I + + G+ +A+ SQD +++WR+ +
Sbjct: 158 EVEGHGDSIHDIKSAR-LGGETYVATSSQDETVKIWRVVEGD------------------ 198
Query: 256 IYKFDISADVHVAINFEALIMGHDDWISSLQWHKTKLQLLTSTADTAVMVWEPDTISGIW 315
+ + + GH DW+ L W + LL+S+AD +++ W+ ++ W
Sbjct: 199 -----------MCLEHVQTLNGHTDWVYGLWWTEEG-DLLSSSADNSIIHWKKGSV---W 243
Query: 316 ICSSRLGELXXXXXXXXXXXXXXFWSCIWFTHDGKDVILTNGKTGSWRIWTSTDGLLWDQ 375
RLG F + G +I + G ++ +G
Sbjct: 244 EDVMRLG------------GEGAFLGVLMV---GNSIIGQSRSGGFYKFGDVLEGF---- 284
Query: 376 ELGITGATKSVTDVAWSIDGNYLLSTSLDQTTRLFAEWKYETSGVERKTPSWCEMARPQI 435
I+G V + W G +LL+ SLD T+R+F E+ RPQ
Sbjct: 285 ---ISGHVDGVKSIDWR--GEFLLTASLDMTSRIFYRGH--------------EVGRPQK 325
Query: 436 HGYDMLCVEPIS--NTRFVSGGDEKILRSFDEPKAVAQLLQKFSGIKTEHNGDLPDSAAL 493
HGY + ++ + +F+ E ILR + EP V + + +++ G + +L
Sbjct: 326 HGYALTSARFLNEEDLQFIGSAQETILRVY-EPTQVFYMSCMW--VESCSKGI---AESL 379
Query: 494 PALGLSNKATTXXXXXXXXXXXXARETAETKNISSELIDELLTPPLEDQLQRHTLWPEIE 553
+ +S+ + ++++E+ ++ + L +QL T + EI+
Sbjct: 380 RRMAVSHHRRSLDDFFPDVNSLKFAAVCAELSLTNEVCEDFVFESLNEQLLSVTTFNEIK 439
Query: 554 KLYGHGYEISCIDVSPDRKLIATACKSNNAQHAVIRLFDAENWNQLPQVLPF---HNLTI 610
K+YGH +++S + VS D I + +S+ + + I + WN+ +++ + H+ I
Sbjct: 440 KVYGHYFDVSDLAVSKD--FIVSCNRSSLKKFSGIFV-----WNRAFELIDYIEEHDYGI 492
Query: 611 TKLRFSKDNRYLLSVSRDRLWSLWERNFDNNSFVLRSFKEKPHSRIIWDADWVPLAKGLA 670
+L FS+D RYL + S+DR S++ D + + + K H RI+WD + +K LA
Sbjct: 493 ERLVFSRDGRYLAAASKDRTVSVYNVGKD----IKLARRLKDHRRIVWDCSFSHDSKYLA 548
Query: 671 FITASRDKTLKFWRLSKEDEATSVELENSIRFSEPVTSISVHKDLYNEKVLLAVGFESGA 730
T SRDK++ + L + + ++ RF TS+ Y LL VG ESG
Sbjct: 549 --TCSRDKSVLVYELPE------LRVKYMSRFDCEATSLCFSPREY----LLVVGLESGD 596
Query: 731 IRILSY 736
+ L +
Sbjct: 597 VVSLGF 602
>Hs7657381 [R] KOG0289 mRNA splicing factor
Length = 504
Score = 74.3 bits (181), Expect = 7e-13
Identities = 57/225 (25%), Positives = 95/225 (41%), Gaps = 25/225 (11%)
Query: 22 ETTKVVAYGAGKTIALWKSMDTSHHGVFKTLKGHTAEVTCVRFVKGTDMMVSASEDFEVR 81
+T K++ GA K + ++ D S + TLKGHT +VT V F D++ SAS D +R
Sbjct: 233 DTNKILTGGADKNVVVF---DKSSEQILATLKGHTKKVTSVVFHPSQDLVFSASPDATIR 289
Query: 82 VWNFPKLREGHMDEVECIQVIKHHKHTITVFAV-LKNLLVVGCADGSISVWSFIEDQYVL 140
+W+ P C+QV++ H+ +T ++ ++ +D +S I+ VL
Sbjct: 290 IWSVP--------NASCVQVVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVL 341
Query: 141 QEEFSVQKGVFPLCLSMHEIEKTQFILAIGGTNVNVFIYSLVSNSEGVSKLEFATKLEGH 200
+ G C H I G + + I+ L + GH
Sbjct: 342 TKVTDETSGCSLTCAQFH---PDGLIFGTGTMDSQIKIWDLKERTN-------VANFPGH 391
Query: 201 EDWIKSLVFRETVPGDYLLASGSQDRYIRLWRIRTNEKIDTSEED 245
I S+ F E Y LA+ + D ++LW +R + T + D
Sbjct: 392 SGPITSIAFSE---NGYYLATAADDSSVKLWDLRKLKNFKTLQLD 433
>CE28600 [S] KOG0281 Beta-TrCP (transducin repeats containing)/Slimb
proteins
Length = 665
Score = 73.6 bits (179), Expect = 1e-12
Identities = 70/299 (23%), Positives = 125/299 (41%), Gaps = 48/299 (16%)
Query: 25 KVVAYGAGKTIALWKSMDTSHHGVFKTLKGHTAEVTCVRFVKGTDMMVSASEDFEVRVWN 84
K+V+ TI +W D + + L GHT V C+++ +++S S D VRVW+
Sbjct: 234 KIVSGLRDNTIKIW---DRKDYSCSRILSGHTGSVLCLQY--DNRVIISGSSDATVRVWD 288
Query: 85 FPKLREGHMDEVECIQVIKHHKHTITVFAVLKNLLVVGCADGSISVWSFIEDQYVLQEEF 144
++ ECI+ + HH + ++V D SI+VW + + +
Sbjct: 289 --------VETGECIKTLIHHCEAVLHLRFANGIMVTCSKDRSIAVWDMVSPRDITIRRV 340
Query: 145 SVQKGVFPLCLSMHEIEKTQFILAIGGTNVNVFIYSLVSNSEGVSKLEFATKLEGHEDWI 204
V +++ + + + A G + V+ + LEF L GH I
Sbjct: 341 LVGHRA---AVNVVDFDDRYIVSASGDRTIKVW---------SMDTLEFVRTLAGHRRGI 388
Query: 205 KSLVFRETVPGDYLLASGSQDRYIRLWRIRT----------NEKIDTSEEDEKKLT--LL 252
L +R L+ SGS D IRLW I + E + DEK++
Sbjct: 389 ACLQYR-----GRLVVSGSSDNTIRLWDIHSGVCLRVLEGHEELVRCIRFDEKRIVSGAY 443
Query: 253 SNKIYKFDISADVHV-AINFE---ALIMGHDDWISSLQWHKTKLQLLTSTADTAVMVWE 307
KI +D+ A + A++ E ++ H + LQ+ Q+++S+ D +++W+
Sbjct: 444 DGKIKVWDLQAALDPRALSSEICLCSLVQHTGRVFRLQF--DDFQIVSSSHDDTILIWD 500
>7300706 [S] KOG0281 Beta-TrCP (transducin repeats containing)/Slimb
proteins
Length = 510
Score = 72.8 bits (177), Expect = 2e-12
Identities = 71/299 (23%), Positives = 121/299 (39%), Gaps = 48/299 (16%)
Query: 25 KVVAYGAGKTIALWKSMDTSHHGVFKTLKGHTAEVTCVRFVKGTDMMVSASEDFEVRVWN 84
K+V+ TI +W D KTL GHT V C+++ +++S S D VRVW+
Sbjct: 222 KIVSGLRDNTIKIWDRTDLQ---CVKTLMGHTGSVLCLQY--DDKVIISGSSDSTVRVWD 276
Query: 85 FPKLREGHMDEVECIQVIKHHKHTITVFAVLKNLLVVGCADGSISVWSFIEDQYVLQEEF 144
++ E + + HH + ++V D SI+VW +
Sbjct: 277 --------VNTGEMVNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMTSPSEITLRRV 328
Query: 145 SVQKGVFPLCLSMHEIEKTQFILAIGGTNVNVFIYSLVSNSEGVSKLEFATKLEGHEDWI 204
V +++ + ++ + A G + V+ S EF L GH+ I
Sbjct: 329 LVGHRA---AVNVVDFDEKYIVSASGDRTIKVW---------STSSCEFVRTLNGHKRGI 376
Query: 205 KSLVFRETVPGDYLLASGSQDRYIRLWRIRTNEKIDTSEEDEKKLTLL------------ 252
L +R D L+ SGS D IRLW I + E E+ + +
Sbjct: 377 ACLQYR-----DRLVVSGSSDNSIRLWDIECGACLRVLEGHEELVRCIRFDTKRIVSGAY 431
Query: 253 SNKIYKFDISA--DVHVAINFEAL--IMGHDDWISSLQWHKTKLQLLTSTADTAVMVWE 307
KI +D+ A D A N L ++ H + LQ+ + Q+++S+ D +++W+
Sbjct: 432 DGKIKVWDLVAALDPRAASNTLCLNTLVEHTGRVFRLQF--DEFQIVSSSHDDTILIWD 488
>At5g49200 [R] KOG0274 Cdc4 and related F-box and WD-40 proteins
Length = 419
Score = 68.2 bits (165), Expect = 5e-11
Identities = 57/211 (27%), Positives = 89/211 (42%), Gaps = 29/211 (13%)
Query: 34 TIALWKSMDTSHHGVFK---TLKGHTAEVTCVRFVKGTDMMVSASEDFEVRVWNFPKLRE 90
+I +WK+ S FK +L+GH+ EVTC F G M+ S S D +++W+
Sbjct: 233 SILVWKATTDSESDPFKYLTSLEGHSGEVTC--FAVGGQMLYSGSVDKTIKMWD------ 284
Query: 91 GHMDEVECIQVIKHHKHTITVFAVLKNLLVVGCADGSISVWSFIEDQY--VLQEEFSVQK 148
++ ++CI +K H T+T L+ DG+I VW++ E+ V+Q Q
Sbjct: 285 --LNTLQCIMTLKQHTGTVTSLLCWDKCLISSSLDGTIKVWAYSENGILKVVQTRRQEQS 342
Query: 149 GVFPLCLSMHEIEKTQFILAIGGTNVNVFIYSLVSNSEGVSKLEFATKLEGHEDWIKSLV 208
V L MH+ E I N V I+ L S E T +
Sbjct: 343 SVHALS-GMHDAEAKPIIFC-SYQNGTVGIFDLPSFQERGRMFSTHT------------I 388
Query: 209 FRETVPGDYLLASGSQDRYIRLWRIRTNEKI 239
T+ LL SG + +R+W + K+
Sbjct: 389 ATLTIGPQGLLFSGDESGNLRVWTLAAGNKV 419
>Hs16306498 [S] KOG0281 Beta-TrCP (transducin repeats containing)/Slimb
proteins
Length = 508
Score = 66.2 bits (160), Expect = 2e-10
Identities = 66/299 (22%), Positives = 118/299 (39%), Gaps = 48/299 (16%)
Query: 25 KVVAYGAGKTIALWKSMDTSHHGVFKTLKGHTAEVTCVRFVKGTDMMVSASEDFEVRVWN 84
K+++ +I +W D + K L GHT V C+++ ++V+ S D VRVW+
Sbjct: 218 KIISGLRDNSIKIW---DKTSLECLKVLTGHTGSVLCLQY--DERVIVTGSSDSTVRVWD 272
Query: 85 FPKLREGHMDEVECIQVIKHHKHTITVFAVLKNLLVVGCADGSISVWSFIEDQYVLQEEF 144
++ E + + HH + L+V D SI+VW +
Sbjct: 273 --------VNTGEVLNTLIHHNEAVLHLRFSNGLMVTCSKDRSIAVWDMASATDITLRRV 324
Query: 145 SVQKGVFPLCLSMHEIEKTQFILAIGGTNVNVFIYSLVSNSEGVSKLEFATKLEGHEDWI 204
V +++ + + + A G + V+ S EF L GH+ I
Sbjct: 325 LVGHRA---AVNVVDFDDKYIVSASGDRTIKVW---------STSTCEFVRTLNGHKRGI 372
Query: 205 KSLVFRETVPGDYLLASGSQDRYIRLWRIRTNEKIDTSEEDEKKLTLL------------ 252
L +R D L+ SGS D IRLW I + E E+ + +
Sbjct: 373 ACLQYR-----DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAY 427
Query: 253 SNKIYKFDISADVHVAINFEAL----IMGHDDWISSLQWHKTKLQLLTSTADTAVMVWE 307
KI +D+ A + L ++ H + LQ+ + Q+++S+ D +++W+
Sbjct: 428 DGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWD 484
>Hs16306496 [S] KOG0281 Beta-TrCP (transducin repeats containing)/Slimb
proteins
Length = 529
Score = 66.2 bits (160), Expect = 2e-10
Identities = 66/299 (22%), Positives = 118/299 (39%), Gaps = 48/299 (16%)
Query: 25 KVVAYGAGKTIALWKSMDTSHHGVFKTLKGHTAEVTCVRFVKGTDMMVSASEDFEVRVWN 84
K+++ +I +W D + K L GHT V C+++ ++V+ S D VRVW+
Sbjct: 239 KIISGLRDNSIKIW---DKTSLECLKVLTGHTGSVLCLQY--DERVIVTGSSDSTVRVWD 293
Query: 85 FPKLREGHMDEVECIQVIKHHKHTITVFAVLKNLLVVGCADGSISVWSFIEDQYVLQEEF 144
++ E + + HH + L+V D SI+VW +
Sbjct: 294 --------VNTGEVLNTLIHHNEAVLHLRFSNGLMVTCSKDRSIAVWDMASATDITLRRV 345
Query: 145 SVQKGVFPLCLSMHEIEKTQFILAIGGTNVNVFIYSLVSNSEGVSKLEFATKLEGHEDWI 204
V +++ + + + A G + V+ S EF L GH+ I
Sbjct: 346 LVGHRA---AVNVVDFDDKYIVSASGDRTIKVW---------STSTCEFVRTLNGHKRGI 393
Query: 205 KSLVFRETVPGDYLLASGSQDRYIRLWRIRTNEKIDTSEEDEKKLTLL------------ 252
L +R D L+ SGS D IRLW I + E E+ + +
Sbjct: 394 ACLQYR-----DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAY 448
Query: 253 SNKIYKFDISADVHVAINFEAL----IMGHDDWISSLQWHKTKLQLLTSTADTAVMVWE 307
KI +D+ A + L ++ H + LQ+ + Q+++S+ D +++W+
Sbjct: 449 DGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWD 505
>Hs16306494 [S] KOG0281 Beta-TrCP (transducin repeats containing)/Slimb
proteins
Length = 542
Score = 66.2 bits (160), Expect = 2e-10
Identities = 66/299 (22%), Positives = 118/299 (39%), Gaps = 48/299 (16%)
Query: 25 KVVAYGAGKTIALWKSMDTSHHGVFKTLKGHTAEVTCVRFVKGTDMMVSASEDFEVRVWN 84
K+++ +I +W D + K L GHT V C+++ ++V+ S D VRVW+
Sbjct: 252 KIISGLRDNSIKIW---DKTSLECLKVLTGHTGSVLCLQY--DERVIVTGSSDSTVRVWD 306
Query: 85 FPKLREGHMDEVECIQVIKHHKHTITVFAVLKNLLVVGCADGSISVWSFIEDQYVLQEEF 144
++ E + + HH + L+V D SI+VW +
Sbjct: 307 --------VNTGEVLNTLIHHNEAVLHLRFSNGLMVTCSKDRSIAVWDMASATDITLRRV 358
Query: 145 SVQKGVFPLCLSMHEIEKTQFILAIGGTNVNVFIYSLVSNSEGVSKLEFATKLEGHEDWI 204
V +++ + + + A G + V+ S EF L GH+ I
Sbjct: 359 LVGHRA---AVNVVDFDDKYIVSASGDRTIKVW---------STSTCEFVRTLNGHKRGI 406
Query: 205 KSLVFRETVPGDYLLASGSQDRYIRLWRIRTNEKIDTSEEDEKKLTLL------------ 252
L +R D L+ SGS D IRLW I + E E+ + +
Sbjct: 407 ACLQYR-----DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAY 461
Query: 253 SNKIYKFDISADVHVAINFEAL----IMGHDDWISSLQWHKTKLQLLTSTADTAVMVWE 307
KI +D+ A + L ++ H + LQ+ + Q+++S+ D +++W+
Sbjct: 462 DGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWD 518
>CE29339 [S] KOG0295 WD40 repeat-containing protein
Length = 404
Score = 63.5 bits (153), Expect = 1e-09
Identities = 65/302 (21%), Positives = 118/302 (38%), Gaps = 56/302 (18%)
Query: 34 TIALWKSMDTSHHGVFKTLKGHTAEVTCVRFVKGTDMMVSASEDFEVRVWNFPKLREGHM 93
TI +W D + +TLKGHT V + +VS S D +++W+F +
Sbjct: 129 TIKVW---DYETGQLERTLKGHTDAVNDIAIDAAGKQLVSCSSDLSIKLWDFGQ------ 179
Query: 94 DEVECIQVIKHHKHTIT--VFAVLKNLLVVGCADGSISVWSFIEDQYVLQEEFSVQKGVF 151
+C++ +K H+HT++ F + ++ D +I W + G
Sbjct: 180 -TYDCLKSLKGHEHTVSSVTFLPTGDFVLSASRDHTIKQW-------------DISTGYC 225
Query: 152 PLCLSMHEIEKTQFILAIGGTNVNVFIYSLVSNSEGVSKLEFATK-----LEGHE----- 201
H ++ GT +++ S + V+ FATK L HE
Sbjct: 226 VYTFRGHNDWVRMIRISNDGT-----LFASASLDQTVTVWSFATKSAKLVLRDHEHAVEC 280
Query: 202 -DWIKSLVFRETV------PGDYLLASGSQDRYIRLWRIRTNEKIDT---SEEDEKKLTL 251
+W + ++L SGS+DR I+ W I T + + T E + L
Sbjct: 281 VEWAPDTAYTNVTGQQPEGNSTHILFSGSRDRSIKAWNINTGDVLFTLLAHENWVRGLAF 340
Query: 252 LSNKIYKFDISADVHVAI------NFEALIMGHDDWISSLQWHKTKLQLLTSTADTAVMV 305
Y ++ D + + I H+ ++S++ +H+T ++T + D + V
Sbjct: 341 HPKGKYLISVADDKTLRVWELSAQRCMKAIEAHEHFVSTVAFHQTSPFVITGSVDMSCKV 400
Query: 306 WE 307
WE
Sbjct: 401 WE 402
>YNL006w [R] KOG0315 G-protein beta subunit-like protein (contains WD40
repeats)
Length = 303
Score = 63.2 bits (152), Expect = 2e-09
Identities = 70/309 (22%), Positives = 129/309 (41%), Gaps = 67/309 (21%)
Query: 12 NKQTQVSDLEETT--KVVAYGAGKTIALWKSMDTSHHGVFKTLKGHTAEVTCVRFVKGTD 69
+ +QV+ LE T K++A + + L+ T+ + V + +GH VT V F +
Sbjct: 30 HSDSQVNRLEITNDKKLLATAGHQNVRLYDIRTTNPNPV-ASFEGHRGNVTSVSFQQDNR 88
Query: 70 MMVSASEDFEVRVWNFPKLREGHMDEVECIQVIKHHKHTITVFAVL----KNLLVVGCAD 125
MV++SED ++VW +V + +++KH V V+ + L+ D
Sbjct: 89 WMVTSSEDGTIKVW-----------DVRSPSIPRNYKHNAPVNEVVIHPNQGELISCDRD 137
Query: 126 GSISVWSFIEDQYVLQ----EEFSVQKGVFPLCLSMHEIEKTQFILAIGGTNVNVFIYSL 181
G+I +W E+Q Q ++ S+Q LSM +LA T N +++ +
Sbjct: 138 GNIRIWDLGENQCTHQLTPEDDTSLQS------LSM---ASDGSMLAAANTKGNCYVWEM 188
Query: 182 VSNSEGVSKLEFATKLEGHEDWIKSLVFRETVPGDYLLASGSQDRYIRLWRIRTNEKIDT 241
++++ S L+ TK H +I ++ V LA+ S D R+W I + K++T
Sbjct: 189 PNHTDA-SHLKPVTKFRAHSTYITRILLSSDVKH---LATCSADHTARVWSIDDDFKLET 244
Query: 242 SEEDEKKLTLLSNKIYKFDISADVHVAINFEALIMGHDDWISSLQWHKTKLQLLTSTADT 301
+ + GH W+ + L+T+++D
Sbjct: 245 TLD--------------------------------GHQRWVWDCAFSADSAYLVTASSDH 272
Query: 302 AVMVWEPDT 310
V +W+ T
Sbjct: 273 YVRLWDLST 281
>At3g49660 [R] KOG0266 WD40 repeat-containing protein
Length = 317
Score = 61.6 bits (148), Expect = 5e-09
Identities = 64/241 (26%), Positives = 102/241 (41%), Gaps = 49/241 (20%)
Query: 26 VVAYGAGKTIALWKSMDTSHHGVFKTLKGHTAEVTCVRFVKGTDMMVSASEDFEVRVWNF 85
+V+ KT+ LW D + KTL GHT CV F ++M+VS S D VR+W+
Sbjct: 86 IVSASDDKTLKLW---DVETGSLIKTLIGHTNYAFCVNFNPQSNMIVSGSFDETVRIWD- 141
Query: 86 PKLREGHMDEVECIQVIKHHKHTITV--FAVLKNLLVVGCADGSISVW---------SFI 134
+ +C++V+ H +T F +L+V DG +W + I
Sbjct: 142 -------VTTGKCLKVLPAHSDPVTAVDFNRDGSLIVSSSYDGLCRIWDSGTGHCVKTLI 194
Query: 135 EDQY--VLQEEFS-----VQKGVFPLCLSMHEIEKTQFILA-IGGTNVNVFIYS------ 180
+D+ V FS + G L + I +F+ G N I S
Sbjct: 195 DDENPPVSFVRFSPNGKFILVGTLDNTLRLWNISSAKFLKTYTGHVNAQYCISSAFSVTN 254
Query: 181 ---LVSNSEG-------VSKLEFATKLEGHEDWIKSLVFRETVPGDYLLASGSQDRYIRL 230
+VS SE ++ + KLEGH + + ++ P + L+ASGS D+ +R+
Sbjct: 255 GKRIVSGSEDNCVHMWELNSKKLLQKLEGHTETVMNVACH---PTENLIASGSLDKTVRI 311
Query: 231 W 231
W
Sbjct: 312 W 312
>Hs4502477 [S] KOG0281 Beta-TrCP (transducin repeats containing)/Slimb
proteins
Length = 569
Score = 60.8 bits (146), Expect = 8e-09
Identities = 65/299 (21%), Positives = 119/299 (39%), Gaps = 48/299 (16%)
Query: 25 KVVAYGAGKTIALWKSMDTSHHGVFKTLKGHTAEVTCVRFVKGTDMMVSASEDFEVRVWN 84
K+V+ TI +W D + + L GHT V C+++ + ++++ S D VRVW+
Sbjct: 279 KIVSGLRDNTIKIW---DKNTLECKRILTGHTGSVLCLQYDER--VIITGSSDSTVRVWD 333
Query: 85 FPKLREGHMDEVECIQVIKHHKHTITVFAVLKNLLVVGCADGSISVWSFIEDQYVLQEEF 144
++ E + + HH + ++V D SI+VW +
Sbjct: 334 --------VNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRV 385
Query: 145 SVQKGVFPLCLSMHEIEKTQFILAIGGTNVNVFIYSLVSNSEGVSKLEFATKLEGHEDWI 204
V +++ + + + A G + V+ S EF L GH+ I
Sbjct: 386 LVGHRA---AVNVVDFDDKYIVSASGDRTIKVW---------NTSTCEFVRTLNGHKRGI 433
Query: 205 KSLVFRETVPGDYLLASGSQDRYIRLWRIRTNEKIDTSEEDEKKLTLL------------ 252
L +R D L+ SGS D IRLW I + E E+ + +
Sbjct: 434 ACLQYR-----DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAY 488
Query: 253 SNKIYKFDISADVHVAINFEAL----IMGHDDWISSLQWHKTKLQLLTSTADTAVMVWE 307
KI +D+ A + L ++ H + LQ+ + Q+++S+ D +++W+
Sbjct: 489 DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 545
>Hs16117783 [S] KOG0281 Beta-TrCP (transducin repeats containing)/Slimb
proteins
Length = 605
Score = 60.8 bits (146), Expect = 8e-09
Identities = 65/299 (21%), Positives = 119/299 (39%), Gaps = 48/299 (16%)
Query: 25 KVVAYGAGKTIALWKSMDTSHHGVFKTLKGHTAEVTCVRFVKGTDMMVSASEDFEVRVWN 84
K+V+ TI +W D + + L GHT V C+++ + ++++ S D VRVW+
Sbjct: 315 KIVSGLRDNTIKIW---DKNTLECKRILTGHTGSVLCLQYDER--VIITGSSDSTVRVWD 369
Query: 85 FPKLREGHMDEVECIQVIKHHKHTITVFAVLKNLLVVGCADGSISVWSFIEDQYVLQEEF 144
++ E + + HH + ++V D SI+VW +
Sbjct: 370 --------VNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRV 421
Query: 145 SVQKGVFPLCLSMHEIEKTQFILAIGGTNVNVFIYSLVSNSEGVSKLEFATKLEGHEDWI 204
V +++ + + + A G + V+ S EF L GH+ I
Sbjct: 422 LVGHRA---AVNVVDFDDKYIVSASGDRTIKVW---------NTSTCEFVRTLNGHKRGI 469
Query: 205 KSLVFRETVPGDYLLASGSQDRYIRLWRIRTNEKIDTSEEDEKKLTLL------------ 252
L +R D L+ SGS D IRLW I + E E+ + +
Sbjct: 470 ACLQYR-----DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAY 524
Query: 253 SNKIYKFDISADVHVAINFEAL----IMGHDDWISSLQWHKTKLQLLTSTADTAVMVWE 307
KI +D+ A + L ++ H + LQ+ + Q+++S+ D +++W+
Sbjct: 525 DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 581
>Hs19923529 [A] KOG0284 Polyadenylation factor I complex subunit PFS2
Length = 1336
Score = 58.2 bits (139), Expect = 5e-08
Identities = 39/143 (27%), Positives = 69/143 (47%), Gaps = 11/143 (7%)
Query: 555 LYGHGYEISCIDVSPDRKLIATACKSNNAQHAVIRLFDAENWNQLPQVLPFHNLTITKLR 614
L GHG ++ C+D P + L+ + K + I+ +D + L L H T+ +++
Sbjct: 240 LRGHGADVKCVDWHPTKGLVVSGSKDSQQP---IKFWDPKTGQSL-ATLHAHKNTVMEVK 295
Query: 615 FSKDNRYLLSVSRDRLWSLWE-RNFDNNSFVLRSFKEKPHSRIIWDADWVPLAKGLAFIT 673
+ + +LL+ SRD L L++ RN V R K++ + W P+ +GL F +
Sbjct: 296 LNLNGNWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATA-----VAWHPVHEGL-FAS 349
Query: 674 ASRDKTLKFWRLSKEDEATSVEL 696
D +L FW + E E +E+
Sbjct: 350 GGSDGSLLFWHVGVEKEVGGMEM 372
>SPBC354.03 [R] KOG0266 WD40 repeat-containing protein
Length = 380
Score = 57.8 bits (138), Expect = 7e-08
Identities = 44/171 (25%), Positives = 88/171 (50%), Gaps = 18/171 (10%)
Query: 544 QRHTLWPEIEKLYGHGYEISCIDVSPDRKLIATACKSNNAQHAVIRLFDAENWNQLPQVL 603
+ H+ + E L+GH ++C+ VSP+++ IAT ++ I+++ A + +L L
Sbjct: 39 ESHSGFSEYCTLFGHEKSVTCVSVSPNKRWIAT-----SSSDGTIKIWSALTF-RLECTL 92
Query: 604 PFHNLTITKLRFSKDNRYLLSVSRDRLWSLWERNFDNNSFVLRSFKEKPHSRIIWDADWV 663
H I++++++ ++YL S S D+ +W+ F+ V K H+ + D+
Sbjct: 93 FGHYRGISQVKWATGSKYLASASDDKTIRIWD--FEKRCSVRCL---KGHTNYVSSIDFN 147
Query: 664 PLAKGLAFITASRDKTLKFWRLSKEDEATSVELENSIRFSEPVTSISVHKD 714
PL G ++ S D+T++ W L + T + + + SEP+ S+S+ D
Sbjct: 148 PL--GTLLVSGSWDETVRIWNL---QDGTCLRMLPA--HSEPIISVSISAD 191
>YDL145c [U] KOG0292 Vesicle coat complex COPI alpha subunit
Length = 1201
Score = 57.4 bits (137), Expect = 8e-08
Identities = 63/222 (28%), Positives = 94/222 (41%), Gaps = 49/222 (22%)
Query: 27 VAYGAGKTIALWKSMDTSHHGVFKTLKGHTAEVTCVRFVKGTDMMVSASEDFEVRVWNFP 86
V+ G TI +W S+DT+ TL GH V V F + ++SAS+D +R+WN+
Sbjct: 69 VSAGDDYTIKVW-SLDTNK--CLYTLTGHLDYVRTVFFHRELPWIISASDDQTIRIWNWQ 125
Query: 87 KLRE-----GHMDEVECIQVIKHHKHTITVFAVLKNLLVVGCADGSISVWSFIEDQYVLQ 141
+E GH V C Q F +L+V D +I +W D L+
Sbjct: 126 NRKEIACLTGHNHFVMCAQ-----------FHPTDDLIVSASLDETIRIW----DISGLR 170
Query: 142 EEFSVQKGVFPLCLSMHEIEKTQFILAIGGTNVNVFIYSLVSNSEGVSKLEFATKLEGHE 201
+ S P S E Q +L+ S G ++F LEGH
Sbjct: 171 KRHSA-----PGTSSFEEQMSAQ--------------QNLLDGSLGDCVVKFI--LEGHT 209
Query: 202 DWIKSLVFRETVPGDYLLASGSQDRYIRLWRIRTNE--KIDT 241
+ F T+P L+ SGS DR ++LWR+ + ++DT
Sbjct: 210 RGVNWASFHPTLP---LIVSGSDDRQVKLWRMSATKAWEVDT 248
>At5g40880 [R] KOG0274 Cdc4 and related F-box and WD-40 proteins
Length = 472
Score = 57.4 bits (137), Expect = 8e-08
Identities = 55/211 (26%), Positives = 92/211 (43%), Gaps = 30/211 (14%)
Query: 34 TIALWKSMDTSHHGVFKTLKG----HTAEVTCVRFVKGTDMMVSASEDFEVRVWNFPKLR 89
+I +WK+ D S FK L H+ EVTC FV G +++ S S D ++VW+
Sbjct: 287 SILVWKATD-SESDPFKYLTSLEGHHSGEVTC--FVVGGEVLYSGSVDKTIKVWD----- 338
Query: 90 EGHMDEVECIQVIKHHKHTITVFAVLKNLLVVGCADGSISVWSFIEDQYVLQEEFSVQK- 148
++ ++C +K H T+T L+ DG+I +W+ E++ + + Q+
Sbjct: 339 ---LNTLQCRMTLKQHIGTVTSLLCWDKCLISSSLDGTIKLWACSENESLKVVQTRKQEL 395
Query: 149 GVFPLCLSMHEIEKTQFILAIGGTNVNVFIYSLVSNSEGVSKLEFATKLEGHEDWIKSLV 208
V LC MH+ E + I+ N V I+ L S E T +
Sbjct: 396 SVHTLC-GMHDAE-AKPIMFCSYQNGAVGIFDLPSFEERGKMFSTQT------------I 441
Query: 209 FRETVPGDYLLASGSQDRYIRLWRIRTNEKI 239
T+ LL SG + +R+W + + K+
Sbjct: 442 CTLTIGPGGLLFSGDKSGNLRVWSLASGTKV 472
>At1g62020 [U] KOG0292 Vesicle coat complex COPI alpha subunit
Length = 1216
Score = 57.4 bits (137), Expect = 8e-08
Identities = 59/284 (20%), Positives = 112/284 (38%), Gaps = 74/284 (26%)
Query: 55 HTAEVTCVRFVKGTDMMVSASEDFEVRVWNFPKLR-----EGHMDEVECIQVIKHHKHTI 109
H V V F + VS +D++++VWN+ R GH+D + +Q HH++
Sbjct: 50 HEGPVRGVHFHNSQPLFVSGGDDYKIKVWNYKNHRCLFTLLGHLDYIRTVQF--HHEYP- 106
Query: 110 TVFAVLKNLLVVGCADGSISVWSFIEDQYVLQEEFSVQKG--VFPLCLSMHEIEKTQFIL 167
+V D +I +W++ V SV G + +C S H E
Sbjct: 107 --------WIVSASDDQTIRIWNWQSRTCV-----SVLTGHNHYVMCASFHPKEDLVVSA 153
Query: 168 AIGGT----NVNVFIYSLVSNSEGVSKLEFATK-------------LEGHEDWIKSLVFR 210
++ T ++ VS ++ + +L LEGH+ + F
Sbjct: 154 SLDQTVRVWDIGALRKKTVSPADDIMRLTQMNSDLFGGVDAIVKYVLEGHDRGVNWAAFH 213
Query: 211 ETVPGDYLLASGSQDRYIRLWRIRTNEKIDTSEEDEKKLTLLSNKIYKFDISADVHVAIN 270
T+P L+ SG+ DR ++LWR+ K ++ D
Sbjct: 214 PTLP---LIVSGADDRQVKLWRMN------------------ETKAWEVD---------- 242
Query: 271 FEALIMGHDDWISSLQWHKTKLQLLTSTADTAVMVWEPDTISGI 314
+ GH + +SS+ +H + +++++ D ++ VW+ +G+
Sbjct: 243 ---TLRGHMNNVSSVMFHAKQDIIVSNSEDKSIRVWDATKRTGL 283
>CE21113 [A] KOG0284 Polyadenylation factor I complex subunit PFS2
Length = 809
Score = 57.0 bits (136), Expect = 1e-07
Identities = 39/151 (25%), Positives = 73/151 (47%), Gaps = 18/151 (11%)
Query: 549 WPEIEKLYGHGYEISCIDVSPDRKLIATACKSNNAQHAVIRLFDAENWNQLPQVLPFHNL 608
+ E L GHG E+ CID P + LIAT + ++++D ++ + L L H
Sbjct: 249 YTEERVLRGHGAEVRCIDWHPTKGLIATGSRDTQQP---VKIWDPKSGSCL-ATLQEHKS 304
Query: 609 TITKLRFSKDNRYLLSVSRDRLWSLWERNFDNNSFVLRSFKE----KPHSRIIWDADWVP 664
++ + F+K+ +LL+ RD L +++ +R KE + H + + W P
Sbjct: 305 SVMAVEFNKNGNWLLTGGRDHLVKMYD---------IRMMKEMRTYRAHKKEVISLAWHP 355
Query: 665 LAKGLAFITASRDKTLKFWRLSKEDEATSVE 695
+ +GL F++ D ++ +W + E E +E
Sbjct: 356 IHEGL-FVSGGGDGSIVYWMVDGEKEIGLLE 385
>CE20251_2 [U] KOG0276 Vesicle coat complex COPI beta' subunit
Length = 287
Score = 57.0 bits (136), Expect = 1e-07
Identities = 35/130 (26%), Positives = 64/130 (48%), Gaps = 15/130 (11%)
Query: 21 EETTKVVAYGAGKTIALWKSMDTSHHGVFKTLKGHTAEVTCVRFVKGTDMMVSASEDFEV 80
E+ V+ KT+ +WK + TL+GH V CV F+ G +VS S+D +
Sbjct: 146 EDPEMFVSGSLDKTLKVWKLGEQES---ICTLEGHEKGVNCVEFLTG-GRIVSGSDDCSI 201
Query: 81 RVWNFPKLREGHMDEVECIQVIKH-HKHTITVFAVLKNLLVVGCADGSISVWSFIEDQYV 139
VW+ + +CI+ +K+ HK+ +T K ++ G D ++ +W+ +
Sbjct: 202 CVWD--------IQTQKCIETLKNAHKNNVTFVTPFKTWIISGAEDSTVKIWN--SQTFS 251
Query: 140 LQEEFSVQKG 149
L++E + +KG
Sbjct: 252 LEKELNFEKG 261
>7303128 [A] KOG0299 U3 snoRNP-associated protein (contains WD40 repeats)
Length = 774
Score = 56.6 bits (135), Expect = 1e-07
Identities = 50/214 (23%), Positives = 90/214 (41%), Gaps = 33/214 (15%)
Query: 32 GKTIALWKSMDTSHHGVFKTLKGHTAEVTCVRFVKGTDMMVSASEDFEVRVWNFPKLREG 91
G I +W H KTLKGH V + F KGT + SA++D V++W+
Sbjct: 235 GPHIQIWCPQTMKH---IKTLKGHRDSVAGLVFRKGTHDLYSAAKDRSVKIWS------- 284
Query: 92 HMDEVECIQVIKHHKHTITVFAVL--KNLLVVGCADGSISVWSFIEDQYVLQEEFSVQKG 149
+DE+ ++ + H+ +T L + + G +D S+ +W E+ ++
Sbjct: 285 -LDEMAYVESLFGHQTAVTSIDALSRERAITAGGSDCSLRIWKITEESQLIYNGHK---- 339
Query: 150 VFPLCLSMHEIEKTQFI----LAIGGTNVNVFIYSLVSNSE-GVSKLEFATKLEGHEDWI 204
IE ++I GG + + ++S + ++L G +WI
Sbjct: 340 --------DSIECVKYINDEHFVSGGMDGAIGLWSALKKKPICTTQLAHGVGENGVANWI 391
Query: 205 KSLVFRETVPGDYLLASGSQDRYIRLWRIRTNEK 238
++ V L+A+GS D +RLW+ N +
Sbjct: 392 TAIA---VVVNTDLVATGSCDGCVRLWQTNPNAR 422
>Hs18544419 [A] KOG0272 U4/U6 small nuclear ribonucleoprotein Prp4 (contains
WD40 repeats)
Length = 446
Score = 56.2 bits (134), Expect = 2e-07
Identities = 51/224 (22%), Positives = 91/224 (39%), Gaps = 31/224 (13%)
Query: 197 LEGHEDWIKSLVFRETVPGDYLLASGSQDRYIRLWRIRTNEKIDTSEEDEKKLTLLSNKI 256
LEGH + + ++ F P +A+GS D+ +LW + T + T ++ LS
Sbjct: 47 LEGHRNVVYAIAFNN--PYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNP 104
Query: 257 YK-------FDISADVHVAINFEAL--IMGHDDWISSLQWHKTKLQLLTSTADTAVMVWE 307
D +A + N E + + GH I SL ++ + +++T + D V+VW+
Sbjct: 105 QSTLVATGSMDTTAKLWDIQNGEEVYTLRGHSAEIISLSFNTSGDRIITGSFDHTVVVWD 164
Query: 308 PDTISGIWICSSRLGELXXXXXXXXXXXXXXFWSCIWFTHDGKDVILTNGKTGSWRIWTS 367
DT + I E+ W C +ILT + ++W +
Sbjct: 165 ADTGRKVNILIGHCAEISSASFN---------WDC--------SLILTGSMDKTCKLWDA 207
Query: 368 TDGLLWDQELGITGATKSVTDVAWSIDGNYLLSTSLDQTTRLFA 411
T+G +TG + D + G + + S D T R+F+
Sbjct: 208 TNGKC---VATLTGHDDEILDSCFDYTGKLIATASADGTARIFS 248
>Hs21361641 [R] KOG0266 WD40 repeat-containing protein
Length = 1196
Score = 55.8 bits (133), Expect = 2e-07
Identities = 52/238 (21%), Positives = 100/238 (41%), Gaps = 33/238 (13%)
Query: 564 CIDVSPDRKLIATACKSNNAQHAVIRLFDAENWNQLPQVLPFHNLTITKLRFSKDNRYLL 623
C+D S + +++A AC S + + L++ + + ++ N+ I L +SKD+ Y+L
Sbjct: 614 CLDFSHNGRILAAACASRDGYPII--LYEIPSGRFMRELCGHLNI-IYDLSWSKDDHYIL 670
Query: 624 SVSRDRLWSLWERNFDNNSFVLRSFKEKPHSRIIWDADWVPLAKGLAFITASRDKTLKFW 683
+ S D +W+ +N + +F+ PH ++ A + P + L +T D ++ W
Sbjct: 671 TSSSDGTARIWKNEINNTN----TFRVLPHPSFVYTAKFHPAVRELV-VTGCYDSMIRIW 725
Query: 684 RLSKEDEATSVELENSIRFSEPVTSISVHKDLYNEKVLLAVGFE------SGAIRILSYT 737
++ +++ + V VHK N G +G I + +
Sbjct: 726 KVEMREDSAIL-----------VRQFDVHKSFINSLCFDTEGHHMYSGDCTGVIVVWNTY 774
Query: 738 ESFNDITEI--DWAITPADKINRLR-----WSNLVENGKLLLGVGSADTSTRIYSLNI 788
ND+ W I K + + + NGK LL + + D++ RI L I
Sbjct: 775 VKINDLEHSVHHWTINKEIKETEFKGIPISYLEIHPNGKRLL-IHTKDSTLRIMDLRI 831
>At2g26060 [R] KOG0645 WD40 repeat protein
Length = 323
Score = 55.8 bits (133), Expect = 2e-07
Identities = 46/209 (22%), Positives = 95/209 (45%), Gaps = 25/209 (11%)
Query: 33 KTIALWKSMDTSHHGVFKTLKGHTAEVTCVRFVKGTDMMVSASEDFEVRVWNFPKLREGH 92
K++ +W+ ++ + + L GHT +V V++ D++ S S D ++VW E
Sbjct: 132 KSVWIWEVLEGNEYDCAAVLTGHTQDVKMVQWHPTMDVLFSCSYDNTIKVW----WSEDD 187
Query: 93 MDEVECIQVI--KHHKHTITVFAVLKNLL---VVGCADG-SISVWSFIEDQYVLQEEFSV 146
E +C+Q + ++ H+ TV+++ N +V C+D ++ +W + EE++
Sbjct: 188 DGEYQCVQTLGESNNGHSSTVWSISFNAAGDKMVTCSDDLTLKIWGTDIAKMQSGEEYAP 247
Query: 147 QKGVFPLCLSMHEIEKTQFILAIGGTNVNVFIYSLVSNSEGVSKLEFATKLEGHEDWIKS 206
+ G + +F+ S + +G S K + HE+ + S
Sbjct: 248 WDDI--------------IASGAGDNAIRLFVDSKHDSVDGPSYNLLLKKNKAHENDVNS 293
Query: 207 LVFRETVPGDYLLASGSQDRYIRLWRIRT 235
+ + G+ LLAS S D +++W++ T
Sbjct: 294 VQW-SPGEGNRLLASASDDGMVKIWQLAT 321
>Hs8922679 [R] KOG0275 Conserved WD40 repeat-containing protein
Length = 513
Score = 55.1 bits (131), Expect = 4e-07
Identities = 46/190 (24%), Positives = 80/190 (41%), Gaps = 17/190 (8%)
Query: 54 GHTAEVTCVRFVKGTDMMVSASEDFEVRVWNFP--KLREGHMDEVECIQVIKHHKHTITV 111
G + V C RF +V+ S D + VWNF K+R+ + + ++
Sbjct: 212 GQKSHVECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMC 271
Query: 112 FAVLKNLLVVGCADGSISVWSFIEDQYVLQEEFSVQKGVFPLCLSMHEIEKTQFILAIGG 171
F+ +L G DG I VW Q + + E + KGV CLS + + +Q + A
Sbjct: 272 FSRDTEMLATGAQDGKIKVWKIQSGQCLRRFERAHSKGV--TCLSFSK-DSSQILSASFD 328
Query: 172 TNVNVFIYSLVSNSEGVSKLEFATKLEGHEDWIKSLVFRETVPGDYLLASGSQDRYIRLW 231
+ + G+ + + GH ++ F T G Y++ S S D +++W
Sbjct: 329 QTIRI---------HGLKSGKTLKEFRGHSSFVNEATF--TQDGHYII-SASSDGTVKIW 376
Query: 232 RIRTNEKIDT 241
++T E +T
Sbjct: 377 NMKTTECSNT 386
>7296695 [A] KOG0284 Polyadenylation factor I complex subunit PFS2
Length = 439
Score = 55.1 bits (131), Expect = 4e-07
Identities = 36/137 (26%), Positives = 67/137 (48%), Gaps = 11/137 (8%)
Query: 555 LYGHGYEISCIDVSPDRKLIATACKSNNAQHAVIRLFDAENWNQLPQVLPFHNLTITKLR 614
L GHG ++ C+ P + +I + K N I+++D ++ L L H T+ L+
Sbjct: 267 LRGHGADVKCVHWHPQKGMIVSGSKDNQQP---IKIWDPKSGIAL-ATLHAHKSTVMDLK 322
Query: 615 FSKDNRYLLSVSRDRLWSLWE-RNFDNNSFVLRSFKEKPHSRIIWDADWVPLAKGLAFIT 673
++ + +L++ SRD L L++ RN V R K++ S W P+ +GL F +
Sbjct: 323 WNDNGNWLVTASRDHLLKLFDIRNLREEVQVFRGHKKEASS-----VSWHPIHEGL-FCS 376
Query: 674 ASRDKTLKFWRLSKEDE 690
D ++ FW + + +
Sbjct: 377 GGSDGSILFWNVGRSTD 393
>At5g16750 [A] KOG0319 WD40-repeat-containing subunit of the 18S rRNA
processing complex
Length = 876
Score = 54.7 bits (130), Expect = 6e-07
Identities = 60/239 (25%), Positives = 98/239 (40%), Gaps = 36/239 (15%)
Query: 26 VVAYGAGKTIALWKSMDTSHHGVFKTLKGHTAEVTCVRFVKGT-DMMVSASEDFEVRVWN 84
+V KT+ LW + S GV GH ++ V F K + VS S D ++VW+
Sbjct: 419 IVTGSKDKTVRLWNATSKSCIGVGT---GHNGDILAVAFAKKSFSFFVSGSGDRTLKVWS 475
Query: 85 FPKLREGHMDEV--ECIQVIKHHKHTITVFAVLKN--LLVVGCADGSISVWSFIEDQYVL 140
+ E + + + V+ H I AV +N L+ G D + S+W + +V+
Sbjct: 476 LDGISEDSEEPINLKTRSVVAAHDKDINSVAVARNDSLVCTGSEDRTASIWRLPDLVHVV 535
Query: 141 ------QEEFSVQKGVFPLCLSMHEIEKTQFILAIGGTNVNVFIYSLVSNSEGVSKLEFA 194
+ FSV+ C+ +KT I AI S+G F
Sbjct: 536 TLKGHKRRIFSVEFSTVDQCVMTASGDKTVKIWAI---------------SDGSCLKTF- 579
Query: 195 TKLEGHEDWIKSLVFRETVPGDYLLASGSQDRYIRLWRIRTNEKIDTSEEDEKKLTLLS 253
EGH + F G ++ G+ D ++LW + T+E I T ++ E K+ L+
Sbjct: 580 ---EGHTSSVLRASF--ITDGTQFVSCGA-DGLLKLWNVNTSECIATYDQHEDKVWALA 632
>At1g49040 [T] KOG2127 Calmodulin-binding protein CRAG contains DENN domain
Length = 1264
Score = 54.7 bits (130), Expect = 6e-07
Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 39/210 (18%)
Query: 31 AGKTIALWKSMDTSHHG--VFKTLKGHTAEVTCVRFVKGTDMMVSASEDFEVRVWNFPKL 88
+G T L K D S G + TLKGHT V + +G +VS S+D V VW+
Sbjct: 949 SGSTDCLVKIWDPSLRGSELRATLKGHTGTVRAISSDRGK--IVSGSDDLSVIVWDKQTT 1006
Query: 89 R-----EGHMDEVECIQVIKHHKHTITVFAVLKNLLVVGCADGSISVWSFIEDQYVLQEE 143
+ +GH +V C++++ + ++ DG++ +W D V
Sbjct: 1007 QLLEELKGHDSQVSCVKMLSGER------------VLTAAHDGTVKMWDVRTDMCV---- 1050
Query: 144 FSVQKGVFPLCLSMHEIEKTQFILAIGGTNVNVFIYSLVSNSEGVSKLEFATKLEGHEDW 203
G + E + + ILA G + I+ + S + KL+GH W
Sbjct: 1051 --ATVGRCSSAILSLEYDDSTGILAAAGRDTVANIWDIRSGKQ-------MHKLKGHTKW 1101
Query: 204 IKSLVFRETVPGDYLLASGSQDRYIRLWRI 233
I+S+ E L +GS D R+W +
Sbjct: 1102 IRSIRMVEDT-----LITGSDDWTARVWSV 1126
>CE14894 [A] KOG0319 WD40-repeat-containing subunit of the 18S rRNA
processing complex
Length = 793
Score = 53.9 bits (128), Expect = 9e-07
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 14/136 (10%)
Query: 2 LSQESIFIGANKQTQVSDLEETTKVVAYGA-GKTIALWKSMDTSHH--GVFKTLKGHTAE 58
L+ S + K D+ E+ ++A G K + LW+ +DT G+ TL GH
Sbjct: 467 LTCSSTMVAHGKDVNCVDISESDALIATGGMDKLVKLWQ-VDTHKMQLGIAGTLSGHRRG 525
Query: 59 VTCVRFVKGTDMMVSASEDFEVRVWNFPKLREGHMDEVECIQVIKHHKHTI--TVFAVLK 116
V V+F K + + S S D +++WN + E C+Q I H + +FA
Sbjct: 526 VGDVKFAKNSHKLASCSGDMTIKIWN--------ISEKSCLQTISGHSCAVFRVIFARND 577
Query: 117 NLLVVGCADGSISVWS 132
+ L+ + G I +W+
Sbjct: 578 SQLISADSAGIIKIWT 593
>CE02043 [R] KOG0289 mRNA splicing factor
Length = 509
Score = 53.9 bits (128), Expect = 9e-07
Identities = 55/222 (24%), Positives = 94/222 (41%), Gaps = 28/222 (12%)
Query: 30 GAGKTIALWKSMDTSHHGVFKTLKGHTAEVTCVRFVKGTDMMVSASEDFEVRVWNFPKLR 89
G KT+ L+ D V +T KGH ++ V +SAS D +RVW+
Sbjct: 245 GIDKTVVLY---DYEKEQVMQTFKGHNKKINAVVLHPDNITAISASADSHIRVWS----- 296
Query: 90 EGHMDEVECIQVIKHHKHTITVFAV-LKNLLVVGCADGSISVWSFIEDQYVLQEEFSVQK 148
+ +I H+ +T ++ ++ +D S +S I L + SV+
Sbjct: 297 ---ATDSSSKAIIDVHQAPVTDISLNASGDYILSASDDSYWAFSDIRSGKSLCK-VSVEP 352
Query: 149 GVFPLCLSMHEIE--KTQFILAIGGTNVNVFIYSLVSNSEGVSKLEFATKLEGHEDWIKS 206
G +++H IE I G + V I+ L + + A GH ++S
Sbjct: 353 GSQ---IAVHSIEFHPDGLIFGTGAADAVVKIWDLKNQT-------VAAAFPGHTAAVRS 402
Query: 207 LVFRETVPGDYLLASGSQDRYIRLWRIRTNEKIDTSEEDEKK 248
+ F E Y LA+GS+D ++LW +R + + T +EK+
Sbjct: 403 IAFSEN---GYYLATGSEDGEVKLWDLRKLKNLKTFANEEKQ 441
>Hs7108333_2 [R] KOG4155 FOG: WD40 repeat
Length = 668
Score = 53.9 bits (128), Expect = 9e-07
Identities = 44/198 (22%), Positives = 90/198 (45%), Gaps = 26/198 (13%)
Query: 41 MDTSHHGVFKTLKGHTAEVTCVRFVKGTDMMVSASEDFEVRVWNFPKLREGHMDEVECIQ 100
++ ++ +F++ H V ++F ++S+S+D E++VWN+ +D +CI
Sbjct: 408 LELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNW------QLD--KCI- 458
Query: 101 VIKHHKHTITVFAVLKNLLVVGCA-DGSISVWSFIEDQYVLQEEFSVQKGVFPLCLSMHE 159
++ H+ T+ F +LKN ++ + DG++ VW+ I +++F +G C H
Sbjct: 459 FLRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGN--KEKDFVCHQGTVLSCDISH- 515
Query: 160 IEKTQFILAIGGTNVNVFIYSLVSNSEGVSKLEFATKLEGHEDWIKSLVFRETVPGDYLL 219
+ T+F ++ + L+ +L GH ++ F LL
Sbjct: 516 -DATKFSSTSADKTAKIWSFDLLLPLH---------ELRGHNGCVRCSAFS---VDSTLL 562
Query: 220 ASGSQDRYIRLWRIRTNE 237
A+G + IR+W + E
Sbjct: 563 ATGDDNGEIRIWNVSNGE 580
>Hs4502123_2 [R] KOG4155 FOG: WD40 repeat
Length = 625
Score = 53.9 bits (128), Expect = 9e-07
Identities = 44/198 (22%), Positives = 90/198 (45%), Gaps = 26/198 (13%)
Query: 41 MDTSHHGVFKTLKGHTAEVTCVRFVKGTDMMVSASEDFEVRVWNFPKLREGHMDEVECIQ 100
++ ++ +F++ H V ++F ++S+S+D E++VWN+ +D +CI
Sbjct: 365 LELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNW------QLD--KCI- 415
Query: 101 VIKHHKHTITVFAVLKNLLVVGCA-DGSISVWSFIEDQYVLQEEFSVQKGVFPLCLSMHE 159
++ H+ T+ F +LKN ++ + DG++ VW+ I +++F +G C H
Sbjct: 416 FLRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGN--KEKDFVCHQGTVLSCDISH- 472
Query: 160 IEKTQFILAIGGTNVNVFIYSLVSNSEGVSKLEFATKLEGHEDWIKSLVFRETVPGDYLL 219
+ T+F ++ + L+ +L GH ++ F LL
Sbjct: 473 -DATKFSSTSADKTAKIWSFDLLLPLH---------ELRGHNGCVRCSAFS---VDSTLL 519
Query: 220 ASGSQDRYIRLWRIRTNE 237
A+G + IR+W + E
Sbjct: 520 ATGDDNGEIRIWNVSNGE 537
>Hs16445438 [R] KOG0644 Uncharacterized conserved protein contains WD40 repeat
and BROMO domains
Length = 2269
Score = 53.1 bits (126), Expect = 2e-06
Identities = 74/312 (23%), Positives = 121/312 (38%), Gaps = 54/312 (17%)
Query: 32 GKTIALWKSMDTSHHGVFKTLKGHTAEVTCVRFVKGTDMMVSASEDFEVRVWNF-----P 86
G L K T + + TL+GH+AE++ + M+ + S D +RVW
Sbjct: 204 GSDDCLVKIWSTHNGRLLSTLRGHSAEISDMAVNYENTMIAAGSCDKIIRVWCLRTCAPV 263
Query: 87 KLREGHMDEVECIQVIKHHKHTITVFAVLKNLLVVGCADGSISVWSFIEDQY-----VLQ 141
+ +GH + +Q K + + +V ADG++ W + + L+
Sbjct: 264 AVLQGHTGSITSLQFSPMAKGS-------QRYMVSTGADGTVCFWQWDLESLKFSPRPLK 316
Query: 142 EEFSVQKGVFPLCLSMHEIEKTQFILAIGGTNVNVFIYSLVSNSEGVSKLEFATKLEGHE 201
+ GV LC S LA G T+ + +Y L G E +LE H
Sbjct: 317 FTEKPRPGVQMLCSS---FSVGGMFLATGSTDHVIRMYFL-----GFEAPEKIAELESHT 368
Query: 202 DWIKSLVFRETVPGDYLLASGSQDRYIRLWR------------IRTNEKIDTSEEDEKKL 249
D + S+ F GD L SGS+D R+WR + T D S E+E+ +
Sbjct: 369 DKVDSIQFCNN--GDRFL-SGSRDGTARIWRFEQLEWRSILLDMATRISGDLSSEEERFM 425
Query: 250 TLLSNKIYKFDISADVHVAINFEAL-------------IMGHDDWISSLQWHKTKLQLLT 296
I + V A+N L +MGH D + L+ H +++
Sbjct: 426 KPKVTMIAWNQNDSIVVTAVNDHVLKVWNSYTGQLLHNLMGHADEVFVLETHPFDSRIML 485
Query: 297 STA-DTAVMVWE 307
S D ++ +W+
Sbjct: 486 SAGHDGSIFIWD 497
>Hs16445436 [R] KOG0644 Uncharacterized conserved protein contains WD40 repeat
and BROMO domains
Length = 2320
Score = 53.1 bits (126), Expect = 2e-06
Identities = 74/312 (23%), Positives = 121/312 (38%), Gaps = 54/312 (17%)
Query: 32 GKTIALWKSMDTSHHGVFKTLKGHTAEVTCVRFVKGTDMMVSASEDFEVRVWNF-----P 86
G L K T + + TL+GH+AE++ + M+ + S D +RVW
Sbjct: 204 GSDDCLVKIWSTHNGRLLSTLRGHSAEISDMAVNYENTMIAAGSCDKIIRVWCLRTCAPV 263
Query: 87 KLREGHMDEVECIQVIKHHKHTITVFAVLKNLLVVGCADGSISVWSFIEDQY-----VLQ 141
+ +GH + +Q K + + +V ADG++ W + + L+
Sbjct: 264 AVLQGHTGSITSLQFSPMAKGS-------QRYMVSTGADGTVCFWQWDLESLKFSPRPLK 316
Query: 142 EEFSVQKGVFPLCLSMHEIEKTQFILAIGGTNVNVFIYSLVSNSEGVSKLEFATKLEGHE 201
+ GV LC S LA G T+ + +Y L G E +LE H
Sbjct: 317 FTEKPRPGVQMLCSS---FSVGGMFLATGSTDHVIRMYFL-----GFEAPEKIAELESHT 368
Query: 202 DWIKSLVFRETVPGDYLLASGSQDRYIRLWR------------IRTNEKIDTSEEDEKKL 249
D + S+ F GD L SGS+D R+WR + T D S E+E+ +
Sbjct: 369 DKVDSIQFCNN--GDRFL-SGSRDGTARIWRFEQLEWRSILLDMATRISGDLSSEEERFM 425
Query: 250 TLLSNKIYKFDISADVHVAINFEAL-------------IMGHDDWISSLQWHKTKLQLLT 296
I + V A+N L +MGH D + L+ H +++
Sbjct: 426 KPKVTMIAWNQNDSIVVTAVNDHVLKVWNSYTGQLLHNLMGHADEVFVLETHPFDSRIML 485
Query: 297 STA-DTAVMVWE 307
S D ++ +W+
Sbjct: 486 SAGHDGSIFIWD 497
>CE23942 [A] KOG0299 U3 snoRNP-associated protein (contains WD40 repeats)
Length = 550
Score = 53.1 bits (126), Expect = 2e-06
Identities = 63/241 (26%), Positives = 105/241 (43%), Gaps = 37/241 (15%)
Query: 2 LSQESIFIGANKQTQVSDLEETTKVVAYGAGKTIALWKSMDTSHHGVFKTLKGHTAEVTC 61
+S + FI + QV + K++ +W + D+ H K L GH +
Sbjct: 204 VSPDQKFIASGGFDQVVKAPKNMKIL-------FQIW-NFDSLEH--IKDLSGHRGPIFS 253
Query: 62 VRFVKGTDMMVSASEDFEVRVWNFPKL-----REGHMDEVECIQVIKHHKHTITVFAVLK 116
+ F T+ + SAS+D V++W+ +L GH D V+ I V+ +
Sbjct: 254 LTFQLKTNNLYSASQDRSVKMWDIDQLGLVDTMYGHQDGVQQIGVLSKQR---------- 303
Query: 117 NLLVVGCADGSISVWSFIEDQYVLQEEFSVQKGVFPLCLSMHEIEKTQFILAIGGTNVNV 176
+ VG D S +W +ED+ L +Q V C++M I + F A G + ++
Sbjct: 304 -VATVGGRDRSARLWK-VEDESQLMFS-GLQNCVSLDCVAM--INEEHF--ATGSADGSI 356
Query: 177 FIYSL-VSNSEGVSKLEFATKLEGHEDWIKSLVFRETVPGDYLLASGSQDRYIRLWRIRT 235
++S + V K T+ G WI +L +P LLASGS + ++LW+I
Sbjct: 357 ALWSFWKKRALHVRKQAHGTQ-NGSGRWIVALA---VLPYSDLLASGSNEGELKLWKISE 412
Query: 236 N 236
N
Sbjct: 413 N 413
>HsM8923075 [R] KOG0266 WD40 repeat-containing protein
Length = 504
Score = 52.8 bits (125), Expect = 2e-06
Identities = 51/238 (21%), Positives = 99/238 (41%), Gaps = 33/238 (13%)
Query: 564 CIDVSPDRKLIATACKSNNAQHAVIRLFDAENWNQLPQVLPFHNLTITKLRFSKDNRYLL 623
C+D S + +++A AC S + + L++ + + ++ N+ I L +SKD+ Y+L
Sbjct: 65 CLDFSHNGRILAAACASRDGYPII--LYEIPSGRFMRELCGHLNI-IYDLSWSKDDHYIL 121
Query: 624 SVSRDRLWSLWERNFDNNSFVLRSFKEKPHSRIIWDADWVPLAKGLAFITASRDKTLKFW 683
+ S D +W+ +N + +F+ H ++ A + P + L +T D ++ W
Sbjct: 122 TSSSDGTARIWKNEINNTN----TFRVLSHPSFVYTAKFHPAVRELV-VTGCYDSMIRIW 176
Query: 684 RLSKEDEATSVELENSIRFSEPVTSISVHKDLYNEKVLLAVGFE------SGAIRILSYT 737
++ +++ + V VHK N G +G I + +
Sbjct: 177 KVEMREDSAIL-----------VRQFDVHKSFINSLCFDTEGHHMYSGDCTGVIVVWNTY 225
Query: 738 ESFNDITEI--DWAITPADKINRLR-----WSNLVENGKLLLGVGSADTSTRIYSLNI 788
ND+ W I K + + + NGK LL + + D++ RI L I
Sbjct: 226 VKINDLEHSVHHWTINKEIKETEFKGIPISYLEIHPNGKRLL-IHTKDSTLRIMDLRI 282
>CE27762 [R] KOG0274 Cdc4 and related F-box and WD-40 proteins
Length = 585
Score = 52.8 bits (125), Expect = 2e-06
Identities = 61/270 (22%), Positives = 103/270 (37%), Gaps = 37/270 (13%)
Query: 48 VFKTLKGHTAEVTCVRFVKGTDMMVSASEDFEVRVWNFPKLREGHMDEVECIQVIKHHKH 107
V TL GHT V + + +VS S D V+VW+ + + ++ H
Sbjct: 286 VMYTLVGHTGGVWTSQISQCGRYIVSGSTDRTVKVWS--------TVDGSLLHTLQGHTS 337
Query: 108 TITVFAVLKNLLVVGCADGSISVWSFIEDQYVLQEEFSVQKGVFPLCLSMHEIEKTQFIL 167
T+ A+ ++LV G D ++ VW +++ ++H +
Sbjct: 338 TVRCMAMAGSILVTGSRDTTLRVWDVESGRHL---------------ATLHGHHAAVRCV 382
Query: 168 AIGGTNVNVFIYSLVSNSEGVSKLEFATKLEGHEDWIKSLVFRETVPGDYLLASGSQDRY 227
GT V Y L GH + + SL+F ++ SGS D
Sbjct: 383 QFDGTTVVSGGYDFTVKIWNAHTGRCIRTLTGHNNRVYSLLFESE---RSIVCSGSLDTS 439
Query: 228 IRLWRIRTNEKIDTSEEDEKKLTLLSNKIYKFDI----SADVHVAI------NFEALIMG 277
IR+W E + + +L S + +I +AD HV + ++ G
Sbjct: 440 IRVWDFTRPEGQECVALLQGHTSLTSGMQLRGNILVSCNADSHVRVWDIHEGTCVHMLSG 499
Query: 278 HDDWISSLQWHKTKLQLLTSTADTAVMVWE 307
H I+SLQW + + TS+ D V +W+
Sbjct: 500 HRSAITSLQWFGRNM-VATSSDDGTVKLWD 528
>CE25007 [R] KOG0274 Cdc4 and related F-box and WD-40 proteins
Length = 587
Score = 52.8 bits (125), Expect = 2e-06
Identities = 61/270 (22%), Positives = 103/270 (37%), Gaps = 37/270 (13%)
Query: 48 VFKTLKGHTAEVTCVRFVKGTDMMVSASEDFEVRVWNFPKLREGHMDEVECIQVIKHHKH 107
V TL GHT V + + +VS S D V+VW+ + + ++ H
Sbjct: 288 VMYTLVGHTGGVWTSQISQCGRYIVSGSTDRTVKVWS--------TVDGSLLHTLQGHTS 339
Query: 108 TITVFAVLKNLLVVGCADGSISVWSFIEDQYVLQEEFSVQKGVFPLCLSMHEIEKTQFIL 167
T+ A+ ++LV G D ++ VW +++ ++H +
Sbjct: 340 TVRCMAMAGSILVTGSRDTTLRVWDVESGRHL---------------ATLHGHHAAVRCV 384
Query: 168 AIGGTNVNVFIYSLVSNSEGVSKLEFATKLEGHEDWIKSLVFRETVPGDYLLASGSQDRY 227
GT V Y L GH + + SL+F ++ SGS D
Sbjct: 385 QFDGTTVVSGGYDFTVKIWNAHTGRCIRTLTGHNNRVYSLLFESE---RSIVCSGSLDTS 441
Query: 228 IRLWRIRTNEKIDTSEEDEKKLTLLSNKIYKFDI----SADVHVAI------NFEALIMG 277
IR+W E + + +L S + +I +AD HV + ++ G
Sbjct: 442 IRVWDFTRPEGQECVALLQGHTSLTSGMQLRGNILVSCNADSHVRVWDIHEGTCVHMLSG 501
Query: 278 HDDWISSLQWHKTKLQLLTSTADTAVMVWE 307
H I+SLQW + + TS+ D V +W+
Sbjct: 502 HRSAITSLQWFGRNM-VATSSDDGTVKLWD 530
>At3g15470 [S] KOG0283 WD40 repeat-containing protein
Length = 883
Score = 52.8 bits (125), Expect = 2e-06
Identities = 54/243 (22%), Positives = 105/243 (42%), Gaps = 20/243 (8%)
Query: 33 KTIALWKSMDTSHHGVFKTLKGHTAEVTCVRFVKGTDM-MVSASEDFEVRVWNFPKLREG 91
KT+ LW + VF H+ VTC++F D +S S D +VRVW+ P +
Sbjct: 534 KTVRLWNLSSQTCLKVFS----HSDYVTCIQFNPVDDRYFISGSLDAKVRVWSIPDRQVV 589
Query: 92 HMDEVECIQVIKHHKHTITVFAVLKNLLVVGCADGSISVWSFIEDQYVLQEEFSVQKGVF 151
++ H T + ++VG GS ++S +++ + + ++Q
Sbjct: 590 DWYDL-------HEMVTSACYTPDGQGVLVGSYKGSCRMYSASDNKLQQKSQINLQNKK- 641
Query: 152 PLCLSMHEIEKTQFILAIGGTNVNVFIYSLVSNSEGVSKLEFATKLEGHEDWIKSLVFRE 211
H+ + T F + G++ V + S S V + KL+G + +
Sbjct: 642 ---KKAHQKKITGFQF-VPGSSSEVLVTSSDSRIRVVDGTDLVNKLKGFRNTSSQISASI 697
Query: 212 TVPGDYLLASGSQDRYIRLWRIRTNEKIDTSEEDEKKLTLLSNKIYKFDISADVHVAINF 271
T G Y++ S S+D ++ +W+ + + + K +T+ ++ Y+ S DV AI++
Sbjct: 698 TADGKYVV-SASEDSHVYIWKYESPASRPSRSNNNKNVTVTNS--YEHFHSQDVSAAISW 754
Query: 272 EAL 274
+
Sbjct: 755 PGM 757
>YDR267c [R] KOG0645 WD40 repeat protein
Length = 330
Score = 52.4 bits (124), Expect = 3e-06
Identities = 65/274 (23%), Positives = 106/274 (37%), Gaps = 47/274 (17%)
Query: 218 LLASGSQDRYIRLWRIRTNE--KIDTSEEDEKKLTLLSN------------------KIY 257
+LA+GS DR I+L ++ ++ ID +E K + S I+
Sbjct: 26 ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIW 85
Query: 258 KFDISADVHVAINFEALIMGHDDWISSLQWHKTKLQLLTSTADTAVMVWEPDTISGIWIC 317
+ SAD ++ A+I GH++ + + W L T + D +V +WE D + C
Sbjct: 86 AKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYEC 145
Query: 318 SSRLGELXXXXXXXXXXXXXXFWSCIWFTHDGKDVILTNGKTGSWRIWTSTDGLLWDQEL 377
S L E IW H + ++ ++ + RIW D W+
Sbjct: 146 ISVLQE-----------HSQDVKHVIW--HPSEALLASSSYDDTVRIWKDYDD-DWECVA 191
Query: 378 GITGATKSVTDVAWSIDGN------YLLSTSLDQTTRLFAEWKYETSGVERKTPSWCEMA 431
+ G +V WS D + L S S D T R+ WKY + + CE
Sbjct: 192 VLNGHEGTV----WSSDFDKTEGVFRLCSGSDDSTVRV---WKYMGDDEDDQQEWVCEAI 244
Query: 432 RPQIHGYDMLCVEPISNTRFVSGGDEKILRSFDE 465
P +H + V N S G + +L ++E
Sbjct: 245 LPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEE 278
>SPCC18.05c [S] KOG0271 Notchless-like WD40 repeat-containing protein
Length = 502
Score = 52.4 bits (124), Expect = 3e-06
Identities = 57/281 (20%), Positives = 119/281 (42%), Gaps = 69/281 (24%)
Query: 51 TLKGHTAEVTCVRFVKGTDMMVSASEDFEVRVWNFPKLREGHMDEVECIQVIKHHKHTIT 110
TL GHTA +TCVR+ G + + S+S D +R+W+ ++G +C+ ++K H +
Sbjct: 264 TLSGHTAPITCVRW-GGQNWIYSSSYDKTIRIWD---AKDG-----KCLHILKGHAARVN 314
Query: 111 VFAV-LKNLLVVGCADGS-ISVWSFIEDQYVLQEEFSVQKGVFPLCLSMHEIEKTQFILA 168
++ +++L G D + SF +++ +E + CL +++ L
Sbjct: 315 HLSLSTEHVLRSGAYDHTDFKPKSFSDERRKAKERYEA-------CL-----KQSGERLV 362
Query: 169 IGGTNVNVFIYSLVSNSEGVSKLEFATKLEGHEDWIKSLVFRETVPGDYLLASGSQDRYI 228
++ + ++ +++ + TK+ GH+ + F P +A+ S D +
Sbjct: 363 SASDDLQLILWDPQKSTKPI------TKMHGHQKVVNHASFS---PDGRCIATASFDSSV 413
Query: 229 RLWRIRTNE-----------------------KIDTSEEDEKKLTLLSNKIYKFDISADV 265
RLW +T + + +S++ K+ + +K KFD+
Sbjct: 414 RLWDGKTGKFLATLRGHVAAVYQCAWSTDSRLLVSSSQDTTLKVWDVRSKKMKFDLP--- 470
Query: 266 HVAINFEALIMGHDDWISSLQWHKTKLQLLTSTADTAVMVW 306
GH+D + ++ W ++ + AD AV +W
Sbjct: 471 -----------GHEDQVFAVDWSPDGQRVASGGADKAVRIW 500
>SPBC713.05 [S] KOG0316 Conserved WD40 repeat-containing protein
Length = 297
Score = 52.4 bits (124), Expect = 3e-06
Identities = 45/235 (19%), Positives = 105/235 (44%), Gaps = 38/235 (16%)
Query: 16 QVSDLE---ETTKVVAYGAGKTIALWKSMDTSHHGVFKTLKGHTAEVTCVRFVKGTDMMV 72
++ DL+ ++TK + G K I +W D + V + L GH A++ +R+ + + ++
Sbjct: 58 EILDLDLVYDSTKFASCGGDKFIQVW---DVNTGKVDRRLGGHLAQINTIRYNEDSSILA 114
Query: 73 SASEDFEVRVWNFPKLREGHMDEVECIQVIKHHKHTITVFAVLKNLLVVGCADGSISVWS 132
S S D +VR+W + + IQV+ K +++ + ++L+V G DG++ +
Sbjct: 115 SGSFDSKVRLW------DCRSNSFSPIQVLADAKDSVSSIDIAEHLIVTGSTDGTLRTYD 168
Query: 133 FIEDQYVLQEEFSVQKGVFPLCLSMHEIEKTQFILAIGGTNVNVFIY-----SLVSNSEG 187
+ ++ F ++ + K+ I N ++ + ++ + G
Sbjct: 169 I--------RKGTLSSDYFSHPITSVKTSKSASFSLISSLNSSIHLLDQETGKILKSYIG 220
Query: 188 VSKLEFATKLEGHEDWIKSLVFRETVPGDYLLASGSQDRYIRLWRIRTNEKIDTS 242
+ +E+ + ++ +++VF SGS+D + LW + +I ++
Sbjct: 221 LKNMEYRVRSSFNQS--ETIVF-----------SGSEDGKVYLWDLENETQITST 262
>ECU02g1400 [A] KOG0284 Polyadenylation factor I complex subunit PFS2
Length = 408
Score = 52.0 bits (123), Expect = 4e-06
Identities = 51/208 (24%), Positives = 88/208 (41%), Gaps = 43/208 (20%)
Query: 34 TIALWKSMDTSHHGVFKTLKGHTAEVTCVRFVKGTDMMVSASEDFEVRVWNFPKLREGHM 93
TI +W S++ V L+GH +V ++ K ++ SA +D V++W+ P+ E
Sbjct: 203 TIKIWDSIEAKEESV---LRGHNWDVRAAQWHKYKSLIASAGKDNLVKMWD-PRTAEE-- 256
Query: 94 DEVECIQVIKHHKHTITVFAVL--KNLLVVGCADGSISVWSFIEDQYVLQEEFSVQKGVF 151
+ + HHK+TI + +N L+ G +DQ + + VF
Sbjct: 257 -----LCTLHHHKNTILALKWMGDENYLLTGG-----------KDQVIKMVDIRTMTDVF 300
Query: 152 PLCLSMHEIEKTQF--------ILAIGGTNVNVFIYSLVSNSEGVSKLEFATKLEGHEDW 203
H+ E T I GGT ++ + + +++ EGHE
Sbjct: 301 TY--KNHKKEVTSIGTHPCIPDIFVSGGTEGGIYFW------QAYTQVPLEVIEEGHEGT 352
Query: 204 IKSLVFRETVPGDYLLASGSQDRYIRLW 231
+ SL + P ++LASGS D+ +R W
Sbjct: 353 VWSLDYH---PVGHILASGSVDQSVRFW 377
>At3g21540 [A] KOG0306 WD40-repeat-containing subunit of the 18S rRNA
processing complex
Length = 949
Score = 52.0 bits (123), Expect = 4e-06
Identities = 39/167 (23%), Positives = 76/167 (45%), Gaps = 19/167 (11%)
Query: 522 ETKNISSELIDELLTPPLEDQLQRHTLWPEIEKLYGHGYEISCIDVSPDRKLIATACKSN 581
+ K+I+ L+D + D L+ + LYGH + CID+S D +LI T +
Sbjct: 544 DAKHIAVALLDSTVKVFYMDSLKFYL------SLYGHKLPVMCIDISSDGELIVTGSQDK 597
Query: 582 NAQHAVIRLFDAENWNQLPQVLPFHNLTITKLRFSKDNRYLLSVSRDRLWSLWERNFDNN 641
N ++++ + + + + H ++ ++F ++ YL S+ +DRL W+ + +
Sbjct: 598 N-----LKIWGLD-FGDCHKSIFAHGDSVMGVKFVRNTHYLFSIGKDRLVKYWDADKFEH 651
Query: 642 SFVLRSFKEKPHSRIIWDADWVPLAKGLAFITASRDKTLKFWRLSKE 688
L H IW +G +T S D++++ W S+E
Sbjct: 652 LLTLEG-----HHAEIWCL--AISNRGDFLVTGSHDRSMRRWDRSEE 691
>YBR198c [K] KOG0263 Transcription initiation factor TFIID subunit TAF5
(also component of histone acetyltransferase SAGA)
Length = 798
Score = 51.6 bits (122), Expect = 5e-06
Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 20/135 (14%)
Query: 561 EISCIDVSPDRKLIATACKSN------------NAQHAVIRLFDAENWNQLPQVLPFHNL 608
++SC+D S D ++ A + + N + + D + + + L H+
Sbjct: 468 DMSCLDFSDDCRIAAAGFQDSYIKIWSLDGSSLNNPNIALNNNDKDE-DPTCKTLVGHSG 526
Query: 609 TITKLRFSKDNRYLLSVSRDRLWSLWERNFDNNSFVLRSFKEKPHSRIIWDADWVPLAKG 668
T+ FS DN+YLLS S D+ LW + D ++ ++ K H+ +WD + PL G
Sbjct: 527 TVYSTSFSPDNKYLLSGSEDKTVRLW--SMDTHTALV---SYKGHNHPVWDVSFSPL--G 579
Query: 669 LAFITASRDKTLKFW 683
F TAS D+T + W
Sbjct: 580 HYFATASHDQTARLW 594
>SPAC343.04c [S] KOG0293 WD40 repeat-containing protein
Length = 507
Score = 51.6 bits (122), Expect = 5e-06
Identities = 40/138 (28%), Positives = 66/138 (46%), Gaps = 14/138 (10%)
Query: 551 EIEKLYGHGYEISCIDVSPDRKLIATACKSNNAQHAVIRLFDAENWNQLPQVLPFHNLTI 610
E + H E+ I S + + +A+A K A +FD N ++ +++ H T+
Sbjct: 205 EYHVFHDHSDEVWQISYSHNGRYLASASKDKTAI-----IFDVVNLKRVFRLIG-HIDTV 258
Query: 611 TKLRFSKDNRYLLSVSRDRLWSLWERNFDNNSFVLRSFKEKPHSRIIWDADWVPLAKGLA 670
+R+S D+RYLLS S D+ LW+ +F ++ H + W+P GL+
Sbjct: 259 AYIRWSPDDRYLLSCSCDKSVILWD------AFTGEKLRDYKHGFSVSCCCWLP--DGLS 310
Query: 671 FITASRDKTLKFWRLSKE 688
FIT S D + W L+ E
Sbjct: 311 FITGSPDCHITHWSLNGE 328
>7301796 [A] KOG0272 U4/U6 small nuclear ribonucleoprotein Prp4 (contains
WD40 repeats)
Length = 436
Score = 51.6 bits (122), Expect = 5e-06
Identities = 45/156 (28%), Positives = 69/156 (43%), Gaps = 18/156 (11%)
Query: 556 YGHGYEISCIDVSP-DRKLIATACKSNNAQHAVIRLFDAENWNQLPQVLPFHNLTITKLR 614
YGH E+ + P D K IATA +A R++D E ++L Q L H + R
Sbjct: 190 YGHTAELVAAEFHPVDGKSIATASLDGSA-----RIYDVETSHELQQ-LTHHGAEVIAAR 243
Query: 615 FSKDNRYLLSVSRDRLWSLWERNFDNNSFVLRSFKEKPHSRIIWDADWVPLAKGLAFITA 674
F++D + LL+ S D ++W+ + LR + S +W+ G T
Sbjct: 244 FNRDGQMLLTGSFDHSAAIWDVRSKSLGHQLRGHSAE-LSNCVWN------FSGSLIATG 296
Query: 675 SRDKTLKFWRLSKEDEATSVELENSIRFSEPVTSIS 710
S D T + W K D+ EL + R S+ V +S
Sbjct: 297 SLDNTARIWDTRKLDQ----ELYLAARHSDEVLDVS 328
>YIL046w [R] KOG0274 Cdc4 and related F-box and WD-40 proteins
Length = 640
Score = 51.2 bits (121), Expect = 6e-06
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 11/135 (8%)
Query: 196 KLEGHEDWIKSLVFRETVPGDYLLASGSQDRYIRLWRIRTNEKIDTSE-EDEKKLTLLSN 254
+L GH D +K+L F D L +GS D+ IR+W T E I T + L++ S
Sbjct: 337 RLSGHSDGVKTLYF-----DDRKLITGSLDKTIRVWNYITGECISTYRGHSDSVLSVDSY 391
Query: 255 KIYKFDISADV-----HVAINFEALIMGHDDWISSLQWHKTKLQLLTSTADTAVMVWEPD 309
+ SAD HV + GH +W++ ++ H + + DT + +W+
Sbjct: 392 QKVIVSGSADKTVKVWHVESRTCYTLRGHTEWVNCVKLHPKSFSCFSCSDDTTIRMWDIR 451
Query: 310 TISGIWICSSRLGEL 324
T S + + +G++
Sbjct: 452 TNSCLKVFRGHVGQV 466
>SPAC57A10.05c [R] KOG0274 Cdc4 and related F-box and WD-40 proteins
Length = 605
Score = 51.2 bits (121), Expect = 6e-06
Identities = 50/210 (23%), Positives = 86/210 (40%), Gaps = 34/210 (16%)
Query: 22 ETTKVVAYGAGKTIALWKSMDTSHHGVFKTLKGHTAEVTCVRFVKGTDMMVSASEDFEVR 81
++T +V+ A T+ LW G TL+GHT V VR ++ +++S S+D ++
Sbjct: 362 DSTLLVSGSADCTVKLWHFSG----GKRITLRGHTGPVNSVRIIRDRGLVLSGSDDSTIK 417
Query: 82 VWNFPKLREGHMDEVECIQVIKHHKHTITVFAVLKNLLVVGCADGSISVWSFIEDQYVLQ 141
+W+ ++ C+ H + A+ + L DG+I W IE + +
Sbjct: 418 IWS--------LETNTCLHTFSAHIGPVQSLALADSRLFSCSLDGTIKQWD-IEKKKCVH 468
Query: 142 EEFSVQKGVFPLCLSMHEIEKTQFILAIGGTNVNVFIYSLVSNSEGVSKLEFATKLEGHE 201
F +GV+ EI L G + V ++ E L+ H
Sbjct: 469 TLFGHIEGVW-------EIAADHLRLISGAHDGVVKVW---------EACECVHTLKNHS 512
Query: 202 DWIKSLVFRETVPGDYLLASGSQDRYIRLW 231
+ + S+ GD + SGS+D I LW
Sbjct: 513 EPVTSVAL-----GDCEVVSGSEDGKIYLW 537
>7293188 [D] KOG0267 Microtubule severing protein katanin p80 subunit B
(contains WD40 repeats)
Length = 296
Score = 51.2 bits (121), Expect = 6e-06
Identities = 40/150 (26%), Positives = 66/150 (43%), Gaps = 15/150 (10%)
Query: 35 IALWKSMDTSHHGVFKTLKGHTAEVTCVRFVKGTDMMVSASEDFEVRVWNFPKLREGHMD 94
I + + D + ++ TL GH V + F + +VS S D VR+W+ +
Sbjct: 81 IGIIRRWDLNSQKIYSTLNGHMKSVRTLDFNPSGEYVVSGSNDTTVRLWDV-------QN 133
Query: 95 EVECIQVIKHHKHTITVFAVLKNLLVVGCA--DGSISVWSFIEDQYVLQEEFSVQKGVFP 152
E CI+V + H + + L + A +GSI +W + + ++ EF V
Sbjct: 134 ENNCIKVCRGHMSHVNSVKFSPDGLWIASAGLEGSILIWDIRKSKQIM--EFIADPPVTA 191
Query: 153 L-CLSMHEIEKTQFILAIGGTNVNVFIYSL 181
+ C+ H E F+LA G + V IY L
Sbjct: 192 ITCVQFHPFE---FLLAAGRVDGTVSIYDL 218
>ECU08g1110 [T] KOG0279 G protein beta subunit-like protein
Length = 334
Score = 50.8 bits (120), Expect = 8e-06
Identities = 51/206 (24%), Positives = 94/206 (44%), Gaps = 19/206 (9%)
Query: 41 MDTSHHGVFKTLKGHTAEVTCVRFVK--GTDMMVSASEDFEVRVWNFPKLREGHMDEVEC 98
M ++ V + L GH EV ++ V+ G +++ S+S D +V W+ + ++
Sbjct: 1 MSSAELEVLEYLNGHKDEVKGLKIVRVSGREILYSSSRDKKVFSWDLHSKIDSEFGKILK 60
Query: 99 IQVIKHHKHTITVFAVLK--NLLVVGCADGSISVWSFIEDQYVLQEEFSVQKGVFPLCLS 156
+ H K I V K N++V +DG +W + +L E G LC+S
Sbjct: 61 LYDGGHSKR-INGLDVSKDGNMMVTVGSDGIGRIWDTESKKSILLEGH----GRDVLCVS 115
Query: 157 MHEIEKTQFILAIGGTNVNVFIYSLVSNSEGVSKLEFATKLEG-HEDWIKSLVFRETVPG 215
++ + T+ + +N++ N++G L+ +E H WI + F T
Sbjct: 116 INSND-TKIVTGSVDRTMNLY------NTKGDLVLKMGRDMEMMHRGWINCVTFHPTE-- 166
Query: 216 DYLLASGSQDRYIRLWRIRTNEKIDT 241
+ +LASGS D +++W + T E + T
Sbjct: 167 ESILASGSADGTVKIWDLDTQEHLQT 192
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.318 0.133 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,062,111
Number of Sequences: 60738
Number of extensions: 1968627
Number of successful extensions: 10104
Number of sequences better than 1.0e-05: 57
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 9443
Number of HSP's gapped (non-prelim): 416
length of query: 793
length of database: 30,389,216
effective HSP length: 114
effective length of query: 679
effective length of database: 23,465,084
effective search space: 15932792036
effective search space used: 15932792036
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)