ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI5990 suspect: LH YU KOG0845 Intracellular trafficking, secretion, and vesicular transport Nuclear pore complex, Nup98 component (sc Nup145/Nup100/Nup116)
r_klactVI5990 suspect: LH YU KOG0845 Nuclear structure Nuclear pore complex, Nup98 component (sc Nup145/Nup100/Nup116)
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI5990 2090693 2089479 -405
(405 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YGL172w [YU] KOG0845 Nuclear pore complex Nup98 component (sc Nu... 199 6e-51
SPAC22G7.09c [YU] KOG0845 Nuclear pore complex Nup98 component (... 64 3e-10
>YGL172w [YU] KOG0845 Nuclear pore complex Nup98 component (sc
Nup145/Nup100/Nup116)
Length = 472
Score = 199 bits (506), Expect = 6e-51
Identities = 109/217 (50%), Positives = 149/217 (68%), Gaps = 16/217 (7%)
Query: 202 AINFINQLAITPMTKISELPIQIRQEIEQLDQFIRTQVSLSKHLEADLQDQTELLDSIPR 261
A+ ++QL ITPMT+ISELP QIRQEIEQLDQ+I+ QV +S HL+AD D EL+DSIPR
Sbjct: 251 ALQNLSQLPITPMTRISELPPQIRQEIEQLDQYIQKQVQISHHLKADTIDHDELIDSIPR 310
Query: 262 DIKYLQKLHFNATRSLSSDLKRIDAIKTLVDKDVKQLENFAIMLQQLVSKGFKISNVEID 321
D+ YL K ++ L DLK+I + K+L+D+D+ + F+++LQQL++ G KIS+ ++D
Sbjct: 311 DVAYLLKSESATSQYLKQDLKKISSFKSLIDEDLLDTQTFSVLLQQLLTPGSKISSNDLD 370
Query: 322 KFFQEKLITYKHKLNDYNDTLSNIDDAVSGLENDLFGN-------------DSSEDDD-- 366
KFFQ+K+ Y+ KL DY LS+I+ AV+G++ DLFG SSE ++
Sbjct: 371 KFFQKKIHLYEKKLEDYCRILSDIETAVNGIDTDLFGAPNNPNSTAITADLGSSEAENLL 430
Query: 367 -TKVGVNIIVSVLIEEFKLFMDTAERIAELHQKCKEI 402
K G+ IVS +IEEF LFMD AERIA LHQK K +
Sbjct: 431 QLKTGLAAIVSTVIEEFTLFMDIAERIAVLHQKTKTL 467
>SPAC22G7.09c [YU] KOG0845 Nuclear pore complex Nup98 component (sc
Nup145/Nup100/Nup116)
Length = 425
Score = 64.3 bits (155), Expect = 3e-10
Identities = 46/198 (23%), Positives = 92/198 (46%), Gaps = 13/198 (6%)
Query: 210 AITPMTKISELPIQIRQEIEQLDQFIRTQVSLSKHLEADLQDQTELLDSIPRDIKYLQKL 269
AI T+ S L ++ ++ LD+ I +Q+ L++ L+ L +EL++S+P D+ +Q+
Sbjct: 228 AINATTRYSSLNANTQKFLDDLDKEIFSQIQLAEELQTKLGTVSELVESVPNDVAEVQRR 287
Query: 270 HFNATRSLSSDLKRIDAIKTLVDKDVKQLENFAIMLQQLVSKGFK---ISNVEIDKFFQE 326
+ + +L D I+ K +VD+D + +L + G SN + +F++
Sbjct: 288 LSSVSTALLIDSDEIETTKRVVDEDTSNARISSRILDVFKTPGATYPFASNDPLMNYFEQ 347
Query: 327 KLITYKHKLNDYNDTLSNIDDAVSGLENDLFGNDSSEDDDTKVGVNIIVSVLIEEFKLFM 386
K + + Y T+ ++ + +E N ++ + EE KLFM
Sbjct: 348 FTENAKKRTDLYAATIGELEQHLEQVETTPQNNSP----------EALLKTIKEEHKLFM 397
Query: 387 DTAERIAELHQKCKEIIV 404
+ R A++H + K + V
Sbjct: 398 ALSNRFAQVHDEVKRLQV 415
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.134 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,552,941
Number of Sequences: 60738
Number of extensions: 460732
Number of successful extensions: 2127
Number of sequences better than 1.0e-05: 2
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2123
Number of HSP's gapped (non-prelim): 3
length of query: 405
length of database: 30,389,216
effective HSP length: 109
effective length of query: 296
effective length of database: 23,768,774
effective search space: 7035557104
effective search space used: 7035557104
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)